1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/* Programmer: Robb Matzke <matzke@llnl.gov>
* Thursday, April 16, 1998
*/
#ifndef _H5Zpublic_H
#define _H5Zpublic_H
/* Public headers needed by this file */
#include "H5public.h"
/*
* Filter identifiers. Values 0 through 255 are for filters defined by the
* HDF5 library. Values 256 through 511 are available for testing new
* filters. Subsequent values should be obtained from the HDF5 development
* team at hdf5dev@ncsa.uiuc.edu. These values will never change because they
* appear in the HDF5 files.
*/
typedef int H5Z_filter_t;
/* Filter IDs */
#define H5Z_FILTER_ERROR (-1) /*no filter */
#define H5Z_FILTER_NONE 0 /*reserved indefinitely */
#define H5Z_FILTER_DEFLATE 1 /*deflation like gzip */
#define H5Z_FILTER_SHUFFLE 2 /*shuffle the data */
#define H5Z_FILTER_FLETCHER32 3 /*fletcher32 checksum of EDC */
#define H5Z_FILTER_SZIP 4 /*szip compression */
#define H5Z_FILTER_NBIT 5 /*nbit compression */
#define H5Z_FILTER_SCALEOFFSET 6 /*scale+offset compression */
#define H5Z_FILTER_RESERVED 256 /*filter ids below this value are reserved for library use */
/* Filters for HDF5 internal test */
#define H5Z_FILTER_DYNLIB1 257
#define H5Z_FILTER_DYNLIB2 258
/* Registered third-party filters */
#define H5Z_FILTER_BZIP2 307
#define H5Z_FILTER_MAX 65535 /*maximum filter id */
/* General macros */
#define H5Z_FILTER_ALL 0 /* Symbol to remove all filters in H5Premove_filter */
#define H5Z_MAX_NFILTERS 32 /* Maximum number of filters allowed in a pipeline */
/* (should probably be allowed to be an
* unlimited amount, but currently each
* filter uses a bit in a 32-bit field,
* so the format would have to be
* changed to accomodate that)
*/
/* Flags for filter definition (stored) */
#define H5Z_FLAG_DEFMASK 0x00ff /*definition flag mask */
#define H5Z_FLAG_MANDATORY 0x0000 /*filter is mandatory */
#define H5Z_FLAG_OPTIONAL 0x0001 /*filter is optional */
/* Additional flags for filter invocation (not stored) */
#define H5Z_FLAG_INVMASK 0xff00 /*invocation flag mask */
#define H5Z_FLAG_REVERSE 0x0100 /*reverse direction; read */
#define H5Z_FLAG_SKIP_EDC 0x0200 /*skip EDC filters for read */
/* Special parameters for szip compression */
/* [These are aliases for the similar definitions in szlib.h, which we can't
* include directly due to the duplication of various symbols with the zlib.h
* header file] */
#define H5_SZIP_ALLOW_K13_OPTION_MASK 1
#define H5_SZIP_CHIP_OPTION_MASK 2
#define H5_SZIP_EC_OPTION_MASK 4
#define H5_SZIP_NN_OPTION_MASK 32
#define H5_SZIP_MAX_PIXELS_PER_BLOCK 32
/* Macros for the shuffle filter */
#define H5Z_SHUFFLE_USER_NPARMS 0 /* Number of parameters that users can set */
#define H5Z_SHUFFLE_TOTAL_NPARMS 1 /* Total number of parameters for filter */
/* Macros for the szip filter */
#define H5Z_SZIP_USER_NPARMS 2 /* Number of parameters that users can set */
#define H5Z_SZIP_TOTAL_NPARMS 4 /* Total number of parameters for filter */
#define H5Z_SZIP_PARM_MASK 0 /* "User" parameter for option mask */
#define H5Z_SZIP_PARM_PPB 1 /* "User" parameter for pixels-per-block */
#define H5Z_SZIP_PARM_BPP 2 /* "Local" parameter for bits-per-pixel */
#define H5Z_SZIP_PARM_PPS 3 /* "Local" parameter for pixels-per-scanline */
/* Macros for the nbit filter */
#define H5Z_NBIT_USER_NPARMS 0 /* Number of parameters that users can set */
/* Macros for the scale offset filter */
#define H5Z_SCALEOFFSET_USER_NPARMS 2 /* Number of parameters that users can set */
/* Special parameters for ScaleOffset filter*/
#define H5Z_SO_INT_MINBITS_DEFAULT 0
typedef enum H5Z_SO_scale_type_t {
H5Z_SO_FLOAT_DSCALE = 0,
H5Z_SO_FLOAT_ESCALE = 1,
H5Z_SO_INT = 2
} H5Z_SO_scale_type_t;
/* Current version of the H5Z_class_t struct */
#define H5Z_CLASS_T_VERS (1)
/* Values to decide if EDC is enabled for reading data */
typedef enum H5Z_EDC_t {
H5Z_ERROR_EDC = -1, /* error value */
H5Z_DISABLE_EDC = 0,
H5Z_ENABLE_EDC = 1,
H5Z_NO_EDC = 2 /* must be the last */
} H5Z_EDC_t;
/* Bit flags for H5Zget_filter_info */
#define H5Z_FILTER_CONFIG_ENCODE_ENABLED (0x0001)
#define H5Z_FILTER_CONFIG_DECODE_ENABLED (0x0002)
/* Return values for filter callback function */
typedef enum H5Z_cb_return_t {
H5Z_CB_ERROR = -1,
H5Z_CB_FAIL = 0, /* I/O should fail if filter fails. */
H5Z_CB_CONT = 1, /* I/O continues if filter fails. */
H5Z_CB_NO = 2
} H5Z_cb_return_t;
/* Filter callback function definition */
typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf,
size_t buf_size, void* op_data);
/* Structure for filter callback property */
typedef struct H5Z_cb_t {
H5Z_filter_func_t func;
void* op_data;
} H5Z_cb_t;
#ifdef __cplusplus
extern "C" {
#endif
/*
* Before a dataset gets created, the "can_apply" callbacks for any filters used
* in the dataset creation property list are called
* with the dataset's dataset creation property list, the dataset's datatype and
* a dataspace describing a chunk (for chunked dataset storage).
*
* The "can_apply" callback must determine if the combination of the dataset
* creation property list setting, the datatype and the dataspace represent a
* valid combination to apply this filter to. For example, some cases of
* invalid combinations may involve the filter not operating correctly on
* certain datatypes (or certain datatype sizes), or certain sizes of the chunk
* dataspace.
*
* The "can_apply" callback can be the NULL pointer, in which case, the library
* will assume that it can apply to any combination of dataset creation
* property list values, datatypes and dataspaces.
*
* The "can_apply" callback returns positive a valid combination, zero for an
* invalid combination and negative for an error.
*/
typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
/*
* After the "can_apply" callbacks are checked for new datasets, the "set_local"
* callbacks for any filters used in the dataset creation property list are
* called. These callbacks receive the dataset's private copy of the dataset
* creation property list passed in to H5Dcreate (i.e. not the actual property
* list passed in to H5Dcreate) and the datatype ID passed in to H5Dcreate
* (which is not copied and should not be modified) and a dataspace describing
* the chunk (for chunked dataset storage) (which should also not be modified).
*
* The "set_local" callback must set any parameters that are specific to this
* dataset, based on the combination of the dataset creation property list
* values, the datatype and the dataspace. For example, some filters perform
* different actions based on different datatypes (or datatype sizes) or
* different number of dimensions or dataspace sizes.
*
* The "set_local" callback can be the NULL pointer, in which case, the library
* will assume that there are no dataset-specific settings for this filter.
*
* The "set_local" callback must return non-negative on success and negative
* for an error.
*/
typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
/*
* A filter gets definition flags and invocation flags (defined above), the
* client data array and size defined when the filter was added to the
* pipeline, the size in bytes of the data on which to operate, and pointers
* to a buffer and its allocated size.
*
* The filter should store the result in the supplied buffer if possible,
* otherwise it can allocate a new buffer, freeing the original. The
* allocated size of the new buffer should be returned through the BUF_SIZE
* pointer and the new buffer through the BUF pointer.
*
* The return value from the filter is the number of bytes in the output
* buffer. If an error occurs then the function should return zero and leave
* all pointer arguments unchanged.
*/
typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts,
const unsigned int cd_values[], size_t nbytes,
size_t *buf_size, void **buf);
/*
* The filter table maps filter identification numbers to structs that
* contain a pointers to the filter function and timing statistics.
*/
typedef struct H5Z_class2_t {
int version; /* Version number of the H5Z_class_t struct */
H5Z_filter_t id; /* Filter ID number */
unsigned encoder_present; /* Does this filter have an encoder? */
unsigned decoder_present; /* Does this filter have a decoder? */
const char *name; /* Comment for debugging */
H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
H5Z_func_t filter; /* The actual filter function */
} H5Z_class2_t;
H5_DLL herr_t H5Zregister(const void *cls);
H5_DLL herr_t H5Zunregister(H5Z_filter_t id);
H5_DLL htri_t H5Zfilter_avail(H5Z_filter_t id);
H5_DLL herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags);
/* Symbols defined for compatibility with previous versions of the HDF5 API.
*
* Use of these symbols is deprecated.
*/
#ifndef H5_NO_DEPRECATED_SYMBOLS
/*
* The filter table maps filter identification numbers to structs that
* contain a pointers to the filter function and timing statistics.
*/
typedef struct H5Z_class1_t {
H5Z_filter_t id; /* Filter ID number */
const char *name; /* Comment for debugging */
H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
H5Z_func_t filter; /* The actual filter function */
} H5Z_class1_t;
#endif /* H5_NO_DEPRECATED_SYMBOLS */
#ifdef __cplusplus
}
#endif
#endif
|