1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
|
/*
* Copyright (C) 1998 NCSA
* All rights reserved.
*
* Programmer: Robb Matzke <matzke@llnl.gov>
* Friday, January 23, 1998
*/
#include <assert.h>
#include <stdio.h>
#include <hdf5.h>
/* The first dataset */
typedef struct s1_t {
int a;
int b;
int c;
int d;
int e;
} s1_t;
/* The second dataset (same as first) */
typedef s1_t s2_t;
/* The third dataset (reversed fields of s1) */
typedef struct s3_t {
int e;
int d;
int c;
int b;
int a;
} s3_t;
/* The fourth dataset (a subset of s1) */
typedef struct s4_t {
int b;
int d;
} s4_t;
/* The fifth dataset (a superset of s1) */
typedef struct s5_t {
int pre;
int a;
int b;
int mid1;
int c;
int mid2;
int d;
int e;
int post;
} s5_t;
#define NX 100
#define NY 2000
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Creates a simple dataset of a compound type and then reads
* it back. The dataset is read back in various ways to
* exercise the I/O pipeline and compound type conversion.
*
* Return: Success: 0
*
* Failure: 1
*
* Programmer: Robb Matzke
* Friday, January 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
main (void)
{
/* First dataset */
static s1_t s1[NX*NY];
hid_t s1_tid;
/* Second dataset */
static s2_t s2[NX*NY];
hid_t s2_tid;
/* Third dataset */
static s3_t s3[NX*NY];
hid_t s3_tid;
/* Fourth dataset */
static s4_t s4[NX*NY];
hid_t s4_tid;
/* Fifth dataset */
static s5_t s5[NX*NY];
hid_t s5_tid;
/* Other variables */
int i;
hid_t file, dataset, space;
herr_t status;
static size_t dim[] = {NX, NY};
/* Create the file */
file = H5Fcreate ("cmpd_dset.h5", H5ACC_OVERWRITE,
H5C_DEFAULT, H5C_DEFAULT);
assert (file>=0);
/* Create the data space */
space = H5Pcreate_simple (2, dim);
assert (space>=0);
/*
*######################################################################
* STEP 1: Save the original dataset natively.
*/
printf ("\
STEP 1: Initialize dataset `s1' and store it on disk in native order.\n");
fflush (stdout);
/* Initialize the dataset */
for (i=0; i<NX*NY; i++) {
s1[i].a = 5*i+0;
s1[i].b = 5*i+1;
s1[i].c = 5*i+2;
s1[i].d = 5*i+3;
s1[i].e = 5*i+4;
}
/* Create the memory data type */
s1_tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
H5Tinsert (s1_tid, "a", HPOFFSET(s1,a), H5T_NATIVE_INT);
H5Tinsert (s1_tid, "b", HPOFFSET(s1,b), H5T_NATIVE_INT);
H5Tinsert (s1_tid, "c", HPOFFSET(s1,c), H5T_NATIVE_INT);
H5Tinsert (s1_tid, "d", HPOFFSET(s1,d), H5T_NATIVE_INT);
H5Tinsert (s1_tid, "e", HPOFFSET(s1,e), H5T_NATIVE_INT);
assert (s1_tid>=0);
/* Create the dataset */
dataset = H5Dcreate (file, "s1", s1_tid, space, H5C_DEFAULT);
assert (dataset>=0);
/* Write the data */
status = H5Dwrite (dataset, s1_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s1);
assert (status>=0);
/*
*######################################################################
* STEP 2: We create a new type ID for the second dataset even though
* it's the same as the first just to test things better, but
* in fact, we could have used s1_tid.
*/
printf ("\
STEP 2: Read the dataset from disk into a new memory buffer which has the\n\
same data type and space. This will be the typical case.\n");
fflush (stdout);
/* Create a data type for s2 */
s2_tid = H5Tcreate (H5T_COMPOUND, sizeof(s2_t));
H5Tinsert (s2_tid, "a", HPOFFSET(s2,a), H5T_NATIVE_INT);
H5Tinsert (s2_tid, "b", HPOFFSET(s2,b), H5T_NATIVE_INT);
H5Tinsert (s2_tid, "c", HPOFFSET(s2,c), H5T_NATIVE_INT);
H5Tinsert (s2_tid, "d", HPOFFSET(s2,d), H5T_NATIVE_INT);
H5Tinsert (s2_tid, "e", HPOFFSET(s2,e), H5T_NATIVE_INT);
assert (s2_tid>=0);
/* Read the data */
status = H5Dread (dataset, s2_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s2);
assert (status>=0);
/* Compare s2 with s1. They should be the same */
for (i=0; i<NX*NY; i++) {
assert (s1[i].a==s2[i].a);
assert (s1[i].b==s2[i].b);
assert (s1[i].c==s2[i].c);
assert (s1[i].d==s2[i].d);
assert (s1[i].e==s2[i].e);
}
/*
*######################################################################
* STEP 3: Read the dataset back into a third memory buffer. This buffer
* has the same data space but the data type is different: the
* data type is a struct whose members are in the opposite order.
*/
printf ("\
STEP 3: Read the dataset again with members in a different order.\n");
fflush (stdout);
/* Create a data type for s3 */
s3_tid = H5Tcreate (H5T_COMPOUND, sizeof(s3_t));
H5Tinsert (s3_tid, "a", HPOFFSET(s3,a), H5T_NATIVE_INT);
H5Tinsert (s3_tid, "b", HPOFFSET(s3,b), H5T_NATIVE_INT);
H5Tinsert (s3_tid, "c", HPOFFSET(s3,c), H5T_NATIVE_INT);
H5Tinsert (s3_tid, "d", HPOFFSET(s3,d), H5T_NATIVE_INT);
H5Tinsert (s3_tid, "e", HPOFFSET(s3,e), H5T_NATIVE_INT);
assert (s3_tid>=0);
/* Read the data */
status = H5Dread (dataset, s3_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s3);
assert (status>=0);
/* Compare s3 with s1. They should be the same */
for (i=0; i<NX*NY; i++) {
assert (s1[i].a==s3[i].a);
assert (s1[i].b==s3[i].b);
assert (s1[i].c==s3[i].c);
assert (s1[i].d==s3[i].d);
assert (s1[i].e==s3[i].e);
}
/*
*######################################################################
* STEP 4: Read a subset of the members. Of the <a,b,c,d,e> members
* stored on disk we'll read <b,d>.
*/
printf ("\
STEP 4: Read a subset of the members.\n");
fflush (stdout);
/* Create a datatype for s4 */
s4_tid = H5Tcreate (H5T_COMPOUND, sizeof(s4_t));
H5Tinsert (s4_tid, "b", HPOFFSET(s4,b), H5T_NATIVE_INT);
H5Tinsert (s4_tid, "d", HPOFFSET(s4,d), H5T_NATIVE_INT);
assert (s4_tid>=0);
/* Read the data */
status = H5Dread (dataset, s4_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s4);
assert (status>=0);
/* Compare s4 with s1 */
for (i=0; i<NX*NY; i++) {
assert (s1[i].b==s4[i].b);
assert (s1[i].d==s4[i].d);
}
/*
*######################################################################
* STEP 5: Read all the members into a struct which has other members
* which have already been initialized.
*/
printf ("\
STEP 5: Read members into a superset which is partially initialized.\n");
fflush (stdout);
/* Initialize some members */
for (i=0; i<NX*NY; i++) {
s5[i].pre = 1000+4*i;
s5[i].mid1 = 1001+4*i;
s5[i].mid2 = 1002+4*i;
s5[i].post = 1003+4*i;
}
/* Create a data type for s5 */
s5_tid = H5Tcreate (H5T_COMPOUND, sizeof(s5_t));
H5Tinsert (s5_tid, "a", HPOFFSET(s5,a), H5T_NATIVE_INT);
H5Tinsert (s5_tid, "b", HPOFFSET(s5,b), H5T_NATIVE_INT);
H5Tinsert (s5_tid, "c", HPOFFSET(s5,c), H5T_NATIVE_INT);
H5Tinsert (s5_tid, "d", HPOFFSET(s5,d), H5T_NATIVE_INT);
H5Tinsert (s5_tid, "e", HPOFFSET(s5,e), H5T_NATIVE_INT);
assert (s5_tid>=0);
/* Read the data */
status = H5Dread (dataset, s5_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s5);
assert (status>=0);
/* Check that the data was read properly */
for (i=0; i<NX*NY; i++) {
assert (s1[i].a==s5[i].a);
assert (s1[i].b==s5[i].b);
assert (s1[i].c==s5[i].c);
assert (s1[i].d==s5[i].d);
assert (s1[i].e==s5[i].e);
}
/* Check that no previous values were clobbered */
for (i=0; i<NX*NY; i++) {
assert (s5[i].pre == 1000+4*i);
assert (s5[i].mid1 == 1001+4*i);
assert (s5[i].mid2 == 1002+4*i);
assert (s5[i].post == 1003+4*i);
}
/*
*######################################################################
* STEP 6: Update fields `b' and `d' on the file leaving the other
* fields unchanged. This tests member alignment and background
* buffers.
*/
printf ("\
STEP 6: Update fields `b' and `d' on the file, leaving the other fields\n\
unchanged.\n");
fflush (stdout);
/* Initialize `s4' with new values */
for (i=0; i<NX*NY; i++) {
s4[i].b = 2000+2*i;
s4[i].d = 2001+2*i;
}
/* Write the data to file */
status = H5Dwrite (dataset, s4_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s4);
assert (status>=0);
/* Read the data back */
status = H5Dread (dataset, s2_tid, H5P_ALL, H5P_ALL, H5C_DEFAULT, s2);
assert (status>=0);
/* Compare */
for (i=0; i<NX*NY; i++) {
assert (s2[i].a == s1[i].a);
assert (s2[i].b == s4[i].b);
assert (s2[i].c == s1[i].c);
assert (s2[i].d == s4[i].d);
assert (s2[i].e == s1[i].e);
}
/*
* Release resources.
*/
H5Dclose (dataset);
H5Fclose (file);
exit (0);
}
|