1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
|
/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
/* $Id$ */
/***********************************************************
*
* Test program: tvlstr
*
* Test the Variable-Length String functionality
*
*************************************************************/
#ifdef WIN32
#include <stdio.h>
#endif
#include "testhdf5.h"
#include "hdf5.h"
#define DATAFILE "tvlstr.h5"
/* 1-D dataset with fixed dimensions */
#define SPACE1_NAME "Space1"
#define SPACE1_RANK 1
#define SPACE1_DIM1 4
/* 2-D dataset with fixed dimensions */
#define SPACE2_NAME "Space2"
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
#define VLSTR_TYPE "vl_string_type"
/* String for testing attributes */
static const char *string_att = "This is the string for the attribute";
static char *string_att_write=NULL;
void *test_vlstr_alloc_custom(size_t size, void *info);
void test_vlstr_free_custom(void *mem, void *info);
/****************************************************************
**
** test_vlstr_alloc_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses malloc to
** allocate the memory and increments the amount of memory
** allocated.
**
****************************************************************/
void *test_vlstr_alloc_custom(size_t size, void *info)
{
void *ret_value=NULL; /* Pointer to return */
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if((ret_value=HDmalloc(extra+size))!=NULL) {
*(size_t *)ret_value=size;
*mem_used+=size;
} /* end if */
ret_value=((unsigned char *)ret_value)+extra;
return(ret_value);
}
/****************************************************************
**
** test_vlstr_free_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses free to
** release the memory and decrements the amount of memory
** allocated.
**
****************************************************************/
void test_vlstr_free_custom(void *_mem, void *info)
{
unsigned char *mem;
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if(_mem!=NULL) {
mem=((unsigned char *)_mem)-extra;
*mem_used-=*(size_t *)mem;
HDfree(mem);
} /* end if */
}
/****************************************************************
**
** test_vlstrings_basic(): Test basic VL string code.
** Tests simple VL string I/O
**
****************************************************************/
static void
test_vlstrings_basic(void)
{
const char *wdata[SPACE1_DIM1]= {
"Four score and seven years ago our forefathers brought forth on this continent a new nation,",
"conceived in liberty and dedicated to the proposition that all men are created equal.",
"Now we are engaged in a great civil war,",
"testing whether that nation or any nation so conceived and so dedicated can long endure."
}; /* Information to write */
char *rdata[SPACE1_DIM1]; /* Information read in */
char *wdata2;
hid_t dataspace, dataset2;
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t size; /* Number of bytes which will be used */
unsigned i; /* counting variable */
int str_used; /* String data in memory */
int mem_used=0; /* Memory used during allocation */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Basic VL String Functionality\n"));
/* Create file */
fid1 = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a datatype to refer to */
tid1 = H5Tcopy (H5T_C_S1);
CHECK(tid1, FAIL, "H5Tcopy");
ret = H5Tset_size (tid1,H5T_VARIABLE);
CHECK(ret, FAIL, "H5Tset_size");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
dataspace = H5Screate(H5S_SCALAR);
dataset2=H5Dcreate(fid1,"Dataset2",tid1,dataspace,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
wdata2 = (char*)HDcalloc(65534, sizeof(char));
HDmemset(wdata2, 'A', 65533);
ret=H5Dwrite(dataset2,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,&wdata2);
CHECK(ret, FAIL, "H5Dwrite");
H5Sclose(dataspace);
H5Dclose(dataset2);
HDfree(wdata2);
/* Change to the custom memory allocation routines for reading VL string */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_vlstr_alloc_custom,&mem_used,test_vlstr_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid1,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* Count the actual number of bytes used by the strings */
for(i=0,str_used=0; i<SPACE1_DIM1; i++)
str_used+=strlen(wdata[i])+1;
/* Compare against the strings actually written */
VERIFY(size,(hsize_t)str_used,"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
VERIFY(mem_used,str_used,"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
if(strlen(wdata[i])!=strlen(rdata[i])) {
num_errs++;
printf("VL data length don't match!, strlen(wdata[%d])=%d, strlen(rdata[%d])=%d\n",(int)i,(int)strlen(wdata[i]),(int)i,(int)strlen(rdata[i]));
continue;
} /* end if */
if( strcmp(wdata[i],rdata[i]) != 0 ) {
num_errs++;
printf("VL data values don't match!, wdata[%d]=%s, rdata[%d]=%s\n",(int)i,wdata[i],(int)i,rdata[i]);
continue;
} /* end if */
} /* end for */
/* Reclaim the read VL data */
ret=H5Dvlen_reclaim(tid1,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vlstrings_basic() */
/****************************************************************
**
** test_vlstring_type(): Test VL string type.
** Tests if VL string is treated as string.
**
****************************************************************/
static void test_vlstring_type(void)
{
hid_t fid; /* HDF5 File IDs */
hid_t tid_vlstr;
H5T_cset_t cset;
H5T_str_t pad;
herr_t ret;
/* Output message about test being performed */
MESSAGE(5, ("Testing VL String type\n"));
/* Open file */
fid = H5Fopen(DATAFILE, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Create a datatype to refer to */
tid_vlstr = H5Tcopy(H5T_C_S1);
CHECK(tid_vlstr, FAIL, "H5Tcopy");
/* Change padding and verify it */
ret = H5Tset_strpad(tid_vlstr, H5T_STR_NULLPAD);
CHECK(ret, FAIL, "H5Tset_strpad");
pad = H5Tget_strpad(tid_vlstr);
VERIFY(pad, H5T_STR_NULLPAD, "H5Tget_strpad");
/* Convert to variable-length string */
ret = H5Tset_size(tid_vlstr, H5T_VARIABLE);
CHECK(ret, FAIL, "H5Tset_size");
/* Check if datatype is VL string */
ret = H5Tget_class(tid_vlstr);
VERIFY(ret, H5T_STRING, "H5Tget_class");
ret = H5Tis_variable_str(tid_vlstr);
VERIFY(ret, TRUE, "H5Tis_variable_str");
/* Check default character set and padding */
cset = H5Tget_cset(tid_vlstr);
VERIFY(cset, H5T_CSET_ASCII, "H5Tget_cset");
pad = H5Tget_strpad(tid_vlstr);
VERIFY(pad, H5T_STR_NULLPAD, "H5Tget_strpad");
/* Commit variable-length string datatype to storage */
ret = H5Tcommit(fid, VLSTR_TYPE, tid_vlstr);
CHECK(ret, FAIL, "H5Tcommit");
/* Close datatype */
ret = H5Tclose(tid_vlstr);
CHECK(ret, FAIL, "H5Tclose");
tid_vlstr = H5Topen(fid, VLSTR_TYPE);
CHECK(tid_vlstr, FAIL, "H5Topen");
ret = H5Tclose(tid_vlstr);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
fid = H5Fopen(DATAFILE, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Open the variable-length string datatype just created */
tid_vlstr = H5Topen(fid, VLSTR_TYPE);
CHECK(tid_vlstr, FAIL, "H5Topen");
/* Verify character set and padding */
cset = H5Tget_cset(tid_vlstr);
VERIFY(cset, H5T_CSET_ASCII, "H5Tget_cset");
pad = H5Tget_strpad(tid_vlstr);
VERIFY(pad, H5T_STR_NULLPAD, "H5Tget_strpad");
/* Close datatype and file */
ret = H5Tclose(tid_vlstr);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vlstring_type() */
/****************************************************************
**
** test_write_vl_string_attribute(): Test basic VL string code.
** Tests writing VL strings as attributes
**
****************************************************************/
static void test_write_vl_string_attribute(void)
{
hid_t file, root, dataspace, att;
hid_t type;
herr_t ret;
char *string_att_check;
/* Open the file */
file = H5Fopen(DATAFILE, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(file, FAIL, "H5Fopen");
/* Create a datatype to refer to. */
type = H5Tcopy (H5T_C_S1);
CHECK(type, FAIL, "H5Tcopy");
ret = H5Tset_size (type, H5T_VARIABLE);
CHECK(ret, FAIL, "H5Tset_size");
root = H5Gopen(file, "/");
CHECK(root, FAIL, "H5Gopen");
dataspace = H5Screate(H5S_SCALAR);
CHECK(dataspace, FAIL, "H5Screate");
/* Test creating a "normal" sized string attribute */
att = H5Acreate(root, "test_scalar", type, dataspace, H5P_DEFAULT);
CHECK(att, FAIL, "H5Acreate");
ret = H5Awrite(att, type, &string_att);
CHECK(ret, FAIL, "H5Awrite");
ret = H5Aread(att, type, &string_att_check);
CHECK(ret, FAIL, "H5Aread");
if(HDstrcmp(string_att_check,string_att)!=0) {
num_errs++;
printf("VL string attributes don't match!, string_att=%s, string_att_check=%s\n",string_att,string_att_check);
} /* end if */
HDfree(string_att_check);
ret = H5Aclose(att);
CHECK(ret, FAIL, "HAclose");
/* Test creating a "large" sized string attribute */
att = H5Acreate(root, "test_scalar_large", type, dataspace, H5P_DEFAULT);
CHECK(att, FAIL, "H5Acreate");
string_att_write = (char*)HDcalloc(8192, sizeof(char));
HDmemset(string_att_write, 'A', 8191);
ret = H5Awrite(att, type, &string_att_write);
CHECK(ret, FAIL, "H5Awrite");
ret = H5Aread(att, type, &string_att_check);
CHECK(ret, FAIL, "H5Aread");
if(HDstrcmp(string_att_check,string_att_write)!=0) {
num_errs++;
printf("VL string attributes don't match!, string_att_write=%s, string_att_check=%s\n",string_att_write,string_att_check);
} /* end if */
HDfree(string_att_check);
/* The attribute string written is freed below, in the test_read_vl_string_attribute() test */
/* HDfree(string_att_write); */
ret = H5Aclose(att);
CHECK(ret, FAIL, "HAclose");
ret = H5Gclose(root);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Tclose(type);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Sclose(dataspace);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
return;
}
/****************************************************************
**
** test_read_vl_string_attribute(): Test basic VL string code.
** Tests reading VL strings from attributes
**
****************************************************************/
static void test_read_vl_string_attribute(void)
{
hid_t file, root, att;
hid_t type;
herr_t ret;
char *string_att_check;
/* Open file */
file = H5Fopen(DATAFILE, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(file, FAIL, "H5Fopen");
/* Create a datatype to refer to. */
type = H5Tcopy (H5T_C_S1);
CHECK(type, FAIL, "H5Tcopy");
ret = H5Tset_size (type, H5T_VARIABLE);
CHECK(ret, FAIL, "H5Tset_size");
root = H5Gopen(file, "/");
CHECK(root, FAIL, "H5Gopen");
/* Test reading "normal" sized string attribute */
att = H5Aopen_name(root, "test_scalar");
CHECK(att, FAIL, "H5Aopen_name");
ret = H5Aread(att, type, &string_att_check);
CHECK(ret, FAIL, "H5Aread");
if(HDstrcmp(string_att_check,string_att)!=0) {
num_errs++;
printf("VL string attributes don't match!, string_att=%s, string_att_check=%s\n",string_att,string_att_check);
} /* end if */
HDfree(string_att_check);
ret = H5Aclose(att);
CHECK(ret, FAIL, "HAclose");
/* Test reading "large" sized string attribute */
att = H5Aopen_name(root, "test_scalar_large");
CHECK(att, FAIL, "H5Aopen_name");
ret = H5Aread(att, type, &string_att_check);
CHECK(ret, FAIL, "H5Aread");
if(HDstrcmp(string_att_check,string_att_write)!=0) {
num_errs++;
printf("VL string attributes don't match!, string_att_write=%s, string_att_check=%s\n",string_att_write,string_att_check);
} /* end if */
HDfree(string_att_check);
HDfree(string_att_write); /* Free string allocated in test_write_vl_string_attribute */
ret = H5Aclose(att);
CHECK(ret, FAIL, "HAclose");
ret = H5Tclose(type);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Gclose(root);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
return;
}
/****************************************************************
**
** test_vlstrings(): Main VL string testing routine.
**
****************************************************************/
void
test_vlstrings(void)
{
/* Output message about test being performed */
MESSAGE(5, ("Testing Variable-Length Strings\n"));
/* These next tests use the same file */
/* Test basic VL string datatype */
test_vlstrings_basic();
test_vlstring_type();
/* Test using VL strings in attributes */
test_write_vl_string_attribute();
test_read_vl_string_attribute();
} /* test_vlstrings() */
/*-------------------------------------------------------------------------
* Function: cleanup_vlstrings
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
* Programmer: Quincey Koziol
* September 10, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
cleanup_vlstrings(void)
{
remove(DATAFILE);
}
|