1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: vfd_swmr_remove_reader.c
* (copied and modified from swmr_remove_reader.c)
*
* Purpose: Reads data from a randomly selected subset of the datasets
* in the VFD SWMR test file. Unlike the regular reader, these
* datasets will be shrinking.
*
*-------------------------------------------------------------------------
*/
/***********/
/* Headers */
/***********/
#include "h5test.h"
#include "vfd_swmr_common.h"
#include "swmr_common.h"
#ifndef H5_HAVE_WIN32_API
/*******************/
/* Local Variables */
/*******************/
static hid_t symbol_tid = -1;
/********************/
/* Local Prototypes */
/********************/
static int check_dataset(hid_t, hid_t, unsigned, const char *, symbol_t *, hid_t);
static int read_records(const char *, unsigned, unsigned long, unsigned, unsigned, unsigned);
static void usage(void);
/*-------------------------------------------------------------------------
* Function: check_dataset
*
* Purpose: For a given dataset, checks to make sure that the stated
* and actual sizes are the same. If they are not, then
* we have an inconsistent dataset due to a SWMR error.
*
* Parameters: hid_t fid
* The SWMR test file's ID.
*
* unsigned verbose
* Whether verbose console output is desired.
*
* const char *sym_name
* The name of the dataset from which to read.
*
* symbol_t *record
* Memory for the record. Must be pre-allocated.
*
* hid_t rec_sid
* The memory dataspace for access. It's always the same so
* there is no need to re-create it every time this function
* is called.
*
* Return: Success: 0
* Failure: -1
*
*-------------------------------------------------------------------------
*/
static int
check_dataset(hid_t fid, hid_t dapl, unsigned verbose, const char *sym_name, symbol_t *record, hid_t rec_sid)
{
hid_t dsid; /* Dataset ID */
hid_t file_sid; /* Dataset's space ID */
hssize_t snpoints; /* Number of elements in dataset */
hsize_t start[2] = {0, 0}, count[2] = {1, 1}; /* Hyperslab selection values */
HDassert(fid >= 0);
HDassert(sym_name);
HDassert(record);
HDassert(rec_sid >= 0);
/* Open dataset for symbol */
if ((dsid = H5Dopen2(fid, sym_name, dapl)) < 0)
goto error;
/* Get the dataset's dataspace */
if ((file_sid = H5Dget_space(dsid)) < 0)
goto error;
/* Get the number of elements (= records, for 1-D datasets) */
if ((snpoints = H5Sget_simple_extent_npoints(file_sid)) < 0)
goto error;
/* Back off by one: it's possible that the metadata indicating
* `snpoints` available is new, but the data is stale, because
* a tick occurred on the writer between H5Dset_extent() and H5Dwrite().
*/
snpoints -= MAX_SIZE_CHANGE;
/* Emit informational message */
if (verbose) {
HDfprintf(stderr,
"READER: Symbol = '%s'"
", # of records = %" PRIdHSIZE "\n",
sym_name, snpoints);
}
/* Check if there are records for symbol */
if (snpoints > 0) {
/* Choose a random record in the dataset, choosing the last record half
* the time */
start[1] = (hsize_t)(HDrandom() % (snpoints * 2));
if (start[1] > (hsize_t)(snpoints - 1))
start[1] = (hsize_t)(snpoints - 1);
if (H5Sselect_hyperslab(file_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
goto error;
/* Read record from dataset */
#ifdef FILLVAL_WORKS
/* When shrinking the dataset, we cannot guarantee that the buffer will
* even be touched, unless there is a fill value. Since fill values do
* not work with SWMR currently (see note in swmr_generator.c), we
* simply initialize rec_id to 0. */
record->rec_id = (uint64_t)ULLONG_MAX - 1;
#else /* FILLVAL_WORKS */
record->rec_id = (uint64_t)0;
#endif /* FILLVAL_WORKS */
if (H5Dread(dsid, symbol_tid, rec_sid, file_sid, H5P_DEFAULT, record) < 0)
goto error;
/* Verify record value - note that it may be the fill value, because the
* chunk may be deleted before the object header has the updated
* dimensions */
if (record->rec_id != start[1] && record->rec_id != 0) {
HDfprintf(stderr, "*** READER: ERROR ***\n");
HDfprintf(stderr, "Incorrect record value!\n");
HDfprintf(stderr,
"Symbol = '%s', # of records = %" PRIdHSIZE ", record->rec_id = %" PRIx64
", expected %" PRIxHSIZE "\n",
sym_name, snpoints, record->rec_id, start[1]);
return -1;
} /* end if */
} /* end if */
/* Close the dataset's dataspace */
if (H5Sclose(file_sid) < 0)
goto error;
/* Close dataset for symbol */
if (H5Dclose(dsid) < 0)
goto error;
return 0;
error:
H5E_BEGIN_TRY
{
H5Sclose(file_sid);
H5Dclose(dsid);
}
H5E_END_TRY;
return -1;
} /* end check_dataset() */
/*-------------------------------------------------------------------------
* Function: read_records
*
* Purpose: For a given dataset, checks to make sure that the stated
* and actual sizes are the same. If they are not, then
* we have an inconsistent dataset due to a SWMR error.
*
* The "common" datasets are a random selection from among
* the level 0 datasets. The "random" datasets are a random
* selection from among all the file's datasets. This scheme
* ensures that the level 0 datasets are interrogated vigorously.
*
* Parameters: const char *filename
* The SWMR test file's name.
*
* unsigned verbose
* Whether verbose console output is desired.
*
* unsigned long nseconds
* The amount of time to read records (ns).
*
* unsigned poll_time
* The amount of time to sleep (s).
*
* unsigned ncommon
* The number of common/non-random datasets that will be opened.
*
* unsigned nrandom
* The number of random datasets that will be opened.
*
* Return: Success: 0
* Failure: -1
*
*-------------------------------------------------------------------------
*/
static int
read_records(const char *filename, unsigned verbose, unsigned long nseconds, unsigned poll_time,
unsigned ncommon, unsigned nrandom)
{
time_t start_time; /* Starting time */
time_t curr_time; /* Current time */
symbol_info_t ** sym_com = NULL; /* Pointers to array of common dataset IDs */
symbol_info_t ** sym_rand = NULL; /* Pointers to array of random dataset IDs */
hid_t dapl;
hid_t mem_sid; /* Memory dataspace ID */
hid_t fid; /* SWMR test file ID */
hid_t fapl; /* File access property list */
symbol_t record; /* The record to add to the dataset */
unsigned v; /* Local index variable */
H5F_vfd_swmr_config_t *config = NULL; /* Configuration for VFD SWMR */
HDassert(filename);
HDassert(nseconds != 0);
HDassert(poll_time != 0);
/* Reset the record */
/* (record's 'info' field might need to change for each record written, also) */
HDmemset(&record, 0, sizeof(record));
if ((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
HDfprintf(stderr, "%s.%d: H5Pcreate failed", __func__, __LINE__);
goto error;
}
if (H5Pset_chunk_cache(dapl, H5D_CHUNK_CACHE_NSLOTS_DEFAULT, 0, H5D_CHUNK_CACHE_W0_DEFAULT) < 0) {
HDfprintf(stderr, "H5Pset_chunk_cache failed");
goto error;
}
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Choosing datasets\n");
/* Allocate space for 'common' datasets, if any */
if (ncommon > 0) {
/* Allocate array to hold pointers to symbols for common datasets */
if (NULL == (sym_com = (symbol_info_t **)HDmalloc(sizeof(symbol_info_t *) * ncommon)))
goto error;
/* Open the common datasets */
for (v = 0; v < ncommon; v++) {
unsigned offset; /* Offset of symbol to use */
/* Determine the offset of the symbol, within level 0 symbols */
/* (level 0 symbols are the most common symbols) */
offset = (unsigned)HDrandom() % symbol_count[0];
sym_com[v] = &symbol_info[0][offset];
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Common symbol #%u = '%s'\n", v, symbol_info[0][offset].name);
} /* end for */
} /* end if */
/* Allocate space for 'random' datasets, if any */
if (nrandom > 0) {
/* Allocate array to hold pointers to symbols for random datasets */
if (NULL == (sym_rand = (symbol_info_t **)HDmalloc(sizeof(symbol_info_t *) * nrandom)))
goto error;
/* Determine the random datasets */
for (v = 0; v < nrandom; v++) {
symbol_info_t *sym; /* Symbol to use */
/* Determine the symbol, within all symbols */
if (NULL == (sym = choose_dataset(NULL, NULL, verbose)))
goto error;
sym_rand[v] = sym;
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Random symbol #%u = '%s'\n", v, sym->name);
} /* end for */
} /* end if */
/* Create a dataspace for the record to read */
if ((mem_sid = H5Screate(H5S_SCALAR)) < 0)
goto error;
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Reading records\n");
/* Get the starting time */
start_time = HDtime(NULL);
curr_time = start_time;
/* Allocate memory for the configuration structure */
if ((config = HDcalloc(1, sizeof(*config))) == NULL)
goto error;
/* config, tick_len, max_lag, writer, flush_raw_data, md_pages_reserved, md_file_path */
init_vfd_swmr_config(config, 4, 5, FALSE, FALSE, 128, "./rw-shadow");
/* use_latest_format, use_vfd_swmr, only_meta_page, config */
if ((fapl = vfd_swmr_create_fapl(FALSE, TRUE, FALSE, config)) < 0) {
HDfprintf(stderr, "%s.%d: vfd_swmr_create_fapl failed\n", __func__, __LINE__);
goto error;
}
/* Loop over reading records until [at least] the correct # of seconds have passed */
while (curr_time < (time_t)(start_time + (time_t)nseconds)) {
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Opening file: %s\n", filename);
/* Open the file */
/* Remove H5E_BEGIN_TRY/END_TRY if you want to see the error stack */
H5E_BEGIN_TRY
{
fid = H5Fopen(filename, H5F_ACC_RDONLY, fapl);
}
H5E_END_TRY;
if (fid < 0) {
HDfprintf(stderr, "READER: Error in opening the file: %s\n", filename);
goto error;
}
/* Check 'common' datasets, if any */
if (ncommon > 0) {
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Checking common symbols\n");
/* Iterate over common datasets */
for (v = 0; v < ncommon; v++) {
/* Check common dataset */
if (check_dataset(fid, dapl, verbose, sym_com[v]->name, &record, mem_sid) < 0)
goto error;
HDmemset(&record, 0, sizeof(record));
} /* end for */
} /* end if */
/* Check 'random' datasets, if any */
if (nrandom > 0) {
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Checking random symbols\n");
/* Iterate over random datasets */
for (v = 0; v < nrandom; v++) {
/* Check random dataset */
if (check_dataset(fid, dapl, verbose, sym_rand[v]->name, &record, mem_sid) < 0)
goto error;
HDmemset(&record, 0, sizeof(record));
} /* end for */
} /* end if */
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Closing file\n");
/* Close the file */
if (H5Fclose(fid) < 0)
goto error;
/* Sleep for the appropriate # of seconds */
HDsleep(poll_time);
/* Retrieve the current time */
curr_time = HDtime(NULL);
} /* end while */
/* Close the fapl */
if (H5Pclose(fapl) < 0)
goto error;
if (config)
HDfree(config);
/* Close the memory dataspace */
if (H5Sclose(mem_sid) < 0)
goto error;
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Closing datasets\n");
/* Close 'random' datasets, if any */
if (nrandom > 0) {
/* Release array holding dataset ID's for random datasets */
HDfree(sym_rand);
} /* end if */
/* Close 'common' datasets, if any */
if (ncommon > 0) {
/* Release array holding dataset ID's for common datasets */
HDfree(sym_com);
} /* end if */
return 0;
error:
if (config)
HDfree(config);
if (sym_rand)
HDfree(sym_rand);
if (sym_com)
HDfree(sym_com);
H5E_BEGIN_TRY
{
H5Sclose(mem_sid);
H5Fclose(fid);
H5Pclose(fapl);
H5Pclose(dapl);
}
H5E_END_TRY;
return -1;
} /* end read_records() */
static void
usage(void)
{
HDprintf("\n");
HDprintf("Usage error!\n");
HDprintf("\n");
HDprintf("Usage: vfd_swmr_remove_reader [-q] [-s <# of seconds to sleep between\n");
HDprintf(" polling>] [-h <# of common symbols to poll>] [-l <# of random symbols\n");
HDprintf(" to poll>] [-r <random seed>] <# of seconds to test>\n");
HDprintf("\n");
HDprintf("Defaults to verbose (no '-q' given), 1 second between polling ('-s 1'),\n");
HDprintf("5 common symbols to poll ('-h 5'), 10 random symbols to poll ('-l 10'),\n");
HDprintf("and will generate a random seed (no -r given).\n");
HDprintf("\n");
HDexit(1);
}
int
main(int argc, const char *argv[])
{
long nseconds = 0; /* # of seconds to test */
int poll_time = 1; /* # of seconds between polling */
int ncommon = 5; /* # of common symbols to poll */
int nrandom = 10; /* # of random symbols to poll */
unsigned verbose = 1; /* Whether to emit some informational messages */
unsigned use_seed = 0; /* Set to 1 if a seed was set on the command line */
unsigned random_seed = 0; /* Random # seed */
unsigned u; /* Local index variables */
int temp;
/* Parse command line options */
if (argc < 2)
usage();
if (argc > 1) {
u = 1;
while (u < (unsigned)argc) {
if (argv[u][0] == '-') {
switch (argv[u][1]) {
/* # of common symbols to poll */
case 'h':
ncommon = HDatoi(argv[u + 1]);
if (ncommon < 0)
usage();
u += 2;
break;
/* # of random symbols to poll */
case 'l':
nrandom = HDatoi(argv[u + 1]);
if (nrandom < 0)
usage();
u += 2;
break;
/* Be quiet */
case 'q':
verbose = 0;
u++;
break;
/* Random # seed */
case 'r':
use_seed = 1;
temp = HDatoi(argv[u + 1]);
if (temp < 0)
usage();
else
random_seed = (unsigned)temp;
u += 2;
break;
/* # of seconds between polling */
case 's':
poll_time = HDatoi(argv[u + 1]);
if (poll_time < 0)
usage();
u += 2;
break;
default:
usage();
break;
} /* end switch */
} /* end if */
else {
/* Get the number of records to append */
nseconds = HDatol(argv[u]);
if (nseconds <= 0)
usage();
u++;
} /* end else */
} /* end while */
} /* end if */
if (nseconds <= 0)
usage();
if (poll_time >= nseconds)
usage();
/* Emit informational message */
if (verbose) {
HDfprintf(stderr, "READER: Parameters:\n");
HDfprintf(stderr, "\t# of seconds between polling = %d\n", poll_time);
HDfprintf(stderr, "\t# of common symbols to poll = %d\n", ncommon);
HDfprintf(stderr, "\t# of random symbols to poll = %d\n", nrandom);
HDfprintf(stderr, "\t# of seconds to test = %ld\n", nseconds);
} /* end if */
/* Set the random seed */
if (0 == use_seed) {
struct timeval t;
HDgettimeofday(&t, NULL);
random_seed = (unsigned)(t.tv_usec);
} /* end if */
HDsrandom(random_seed);
/* ALWAYS emit the random seed for possible debugging */
HDfprintf(stderr, "READER: Using reader random seed: %u\n", random_seed);
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Generating symbol names\n");
/* Generate dataset names */
if (generate_symbols() < 0) {
HDfprintf(stderr, "READER: Error generating symbol names!\n");
HDexit(1);
} /* end if */
/* Create datatype for creating datasets */
if ((symbol_tid = create_symbol_datatype()) < 0)
return -1;
/* Reading records from datasets */
if (read_records(VFD_SWMR_FILENAME, verbose, (unsigned long)nseconds, (unsigned)poll_time,
(unsigned)ncommon, (unsigned)nrandom) < 0) {
HDfprintf(stderr, "READER: Error reading records from datasets!\n");
HDexit(1);
} /* end if */
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Releasing symbols\n");
/* Clean up the symbols */
if (shutdown_symbols() < 0) {
HDfprintf(stderr, "READER: Error releasing symbols!\n");
HDexit(1);
} /* end if */
/* Emit informational message */
if (verbose)
HDfprintf(stderr, "READER: Closing objects\n");
/* Close objects created */
if (H5Tclose(symbol_tid) < 0) {
HDfprintf(stderr, "READER: Error closing symbol datatype!\n");
HDexit(1);
} /* end if */
return 0;
}
#else /* H5_HAVE_WIN32_API */
int
main(void)
{
HDfprintf(stderr, "Non-POSIX platform. Skipping.\n");
return EXIT_SUCCESS;
} /* end main() */
#endif /* H5_HAVE_WIN32_API */
|