1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
|
/* $Id$ */
/*
* Parallel tests for file operations
*/
#include <testphdf5.h>
/*
* test file access by communicator besides COMM_WORLD.
* Split COMM_WORLD into two, one (even_comm) contains the original
* processes of even ranks. The other (odd_comm) contains the original
* processes of odd ranks. Processes in even_comm creates a file, then
* cloose it, using even_comm. Processes in old_comm just do a barrier
* using odd_comm. Then they all do a barrier using COMM_WORLD.
* If the file creation and cloose does not do correct collective action
* according to the communicator argument, the processes will freeze up
* sooner or later due to barrier mixed up.
*/
void
test_split_comm_access(char *filename[])
{
int mpi_size, mpi_rank;
MPI_Comm comm;
MPI_Info info = MPI_INFO_NULL;
int color, mrc;
int newrank, newprocs;
hid_t fid; /* file IDs */
hid_t acc_tpl; /* File access properties */
herr_t ret; /* generic return value */
if (verbose)
printf("Split Communicator access test on file %s %s\n",
filename[0], filename[1]);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
color = mpi_rank%2;
mrc = MPI_Comm_split (MPI_COMM_WORLD, color, mpi_rank, &comm);
VRFY((mrc==MPI_SUCCESS), "");
MPI_Comm_size(comm,&newprocs);
MPI_Comm_rank(comm,&newrank);
if (color){
/* odd-rank processes */
mrc = MPI_Barrier(comm);
VRFY((mrc==MPI_SUCCESS), "");
}else{
/* even-rank processes */
int sub_mpi_rank; /* rank in the sub-comm */
MPI_Comm_rank(comm,&sub_mpi_rank);
/* setup file access template */
acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
VRFY((acc_tpl != FAIL), "");
/* set Parallel access with communicator */
ret = H5Pset_mpi(acc_tpl, comm, info);
VRFY((ret != FAIL), "");
/* create the file collectively */
fid=H5Fcreate(filename[color],H5F_ACC_TRUNC,H5P_DEFAULT,acc_tpl);
VRFY((fid != FAIL), "H5Fcreate succeeded");
/* Release file-access template */
ret=H5Pclose(acc_tpl);
VRFY((ret != FAIL), "");
/* close the file */
ret=H5Fclose(fid);
VRFY((ret != FAIL), "");
/* detele the test file */
if (sub_mpi_rank == 0){
mrc = MPI_File_delete(filename[color], info);
VRFY((mrc==MPI_SUCCESS), "");
}
}
}
/*
* MPIO independent overlapping writes.
*
* First n-1 processes open 1 file.
* Each of the n-1 process writes chunks of data to the file in round-robin
* fashion, in a interleaved but not overlapped fashion. Using increasing
* chunk sizes for the benefits of testing different write sizes and also
* reducing the numbers of writes.
*
* Last process (n-1) just waits.
* First n-1 processes finish writing and cloose the file.
* Last process opens the same file and verifies the data.
*/
#define MPIO_TEST_WRITE_SIZE 1024*1024 /* 1 MB */
void
test_mpio_overlap_writes(char *filename[])
{
int mpi_size, mpi_rank;
MPI_Comm comm;
MPI_Info info = MPI_INFO_NULL;
int color, mrc;
MPI_File fh;
int newrank, newprocs;
hid_t fid; /* file IDs */
hid_t acc_tpl; /* File access properties */
herr_t ret; /* generic return value */
int i;
char buf[4093]; /* use some prime number for size */
int bufsize = sizeof(buf);
int stride;
MPI_Offset mpi_off;
MPI_Status mpi_stat;
if (verbose)
printf("MPIO independent overlapping writes test on file %s\n",
filename[0]);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* Need at least 2 processes */
VRFY((mpi_size >= 2), "Has at least 2 processes");
/* splits processes 0 to n-2 into one comm. and the last one into another */
color = ((mpi_rank < (mpi_size - 1)) ? 0 : 1);
mrc = MPI_Comm_split (MPI_COMM_WORLD, color, mpi_rank, &comm);
VRFY((mrc==MPI_SUCCESS), "Comm_split succeeded");
if (color==0){
/* First n-1 processes (color==0) open a file and write it */
mrc = MPI_File_open(comm, filename[0], MPI_MODE_CREATE|MPI_MODE_RDWR,
info, &fh);
VRFY((mrc==MPI_SUCCESS), "");
stride = 1;
mpi_off = mpi_rank*stride;
while (mpi_off < MPIO_TEST_WRITE_SIZE){
/* make sure the write does not exceed the TEST_WRITE_SIZE */
if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
stride = MPIO_TEST_WRITE_SIZE - mpi_off;
/* set data to some trivial pattern for easy verification */
for (i=0; i<stride; i++)
buf[i] = (mpi_off+i) & 0x7f;
mrc = MPI_File_write_at(fh, mpi_off, buf, stride, MPI_BYTE,
&mpi_stat);
VRFY((mrc==MPI_SUCCESS), "");
/* move the offset pointer to last byte written by all processes */
mpi_off += (mpi_size - 1 - mpi_rank) * stride;
/* Increase chunk size without exceeding buffer size. */
/* Then move the starting offset for next write. */
stride *= 2;
if (stride > bufsize)
stride = bufsize;
mpi_off += mpi_rank*stride;
}
/* close file and free the communicator */
mrc = MPI_File_close(&fh);
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
mrc = MPI_Comm_free(&comm);
VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
/* sync with the other waiting processes */
mrc = MPI_Barrier(MPI_COMM_WORLD);
VRFY((mrc==MPI_SUCCESS), "Sync after writes");
}else{
/* last process waits till writes are done,
* then opens file to verify data.
*/
mrc = MPI_Barrier(MPI_COMM_WORLD);
VRFY((mrc==MPI_SUCCESS), "Sync after writes");
mrc = MPI_File_open(comm, filename[0], MPI_MODE_RDONLY,
info, &fh);
VRFY((mrc==MPI_SUCCESS), "");
stride = bufsize;
for (mpi_off=0; mpi_off < MPIO_TEST_WRITE_SIZE; mpi_off += bufsize){
/* make sure it does not read beyond end of data */
if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
stride = MPIO_TEST_WRITE_SIZE - mpi_off;
mrc = MPI_File_read_at(fh, mpi_off, buf, stride, MPI_BYTE,
&mpi_stat);
VRFY((mrc==MPI_SUCCESS), "");
for (i=0; i<stride; i++){
if (buf[i] != ((mpi_off+i) & 0x7f))
printf("proc %d: found data error at [%d], expect %d, got %d\n",
mpi_rank, mpi_off+i, mpi_off & 0x7f, buf[0]);
}
}
/* close file and free the communicator */
mrc = MPI_File_close(&fh);
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
mrc = MPI_Comm_free(&comm);
VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
}
/*
* one more sync to ensure all processes have done reading
* before ending this test.
*/
mrc = MPI_Barrier(MPI_COMM_WORLD);
VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
}
|
