1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "gif.h"
/* just a small cleanup routine before we leave */
void
cleanup(BYTE *ptr)
{
if (ptr)
free(ptr);
}
/* Function: ReadHDF
** Return: 0 on completion without error, -1 on error
** Input: CHAR *h5_file - HDF file name
** CHAR *dset_name - Name of the HDF Image dataset
** CHAR *pal_name - Name of the HDF palette
** Output: BYTE** data - the HDF Image to be converted
** BYTE palette[256][3] - the corresponding palette
** hsize_t* image_size - the size of each dimension of the image
**
** Future Notes:
** The way readHDF works right now is that it expects the user
** to know the exact path to the HDF image. Thus it does not
** parse the HDF file looking for image datasets and corresponding
** palettes. Also it takes in the default palette for the image
** specified, if the palette is missing, it makes a default greyscale
** palette and throws it in.
**
*/
int ReadHDF(BYTE** data, BYTE palette[256][3], hsize_t *image_size,
CHAR *h5_file, CHAR *dset_name, CHAR *pal_name)
{
hid_t fHfile; /* H5 file to open */
hid_t dspace; /* dataspace identifier for the the dataset */
hid_t dtype; /* datatype identifier for the the dataset */
hid_t dset; /* dataset identifier */
hid_t pal_set; /* dataset for palette */
hid_t pal_space; /* dataspace for palette */
hid_t pal_dtype; /* datatype for palette */
hsize_t datasize; /* size of the image */
int pal_exist = 0; /* do we have a palette? */
/* check stuff */
if (!h5_file || !dset_name || !image_size) {
fprintf(stderr, "NULL is not an acceptable input for HDFread. Aborting.\n");
return -1;
}
/* do we have a palette ? */
if (pal_name) {
pal_exist = 1;
}
/* try opening the file */
/* H5 file open calls */
if ((fHfile = H5Fopen(h5_file , H5F_ACC_RDONLY , H5P_DEFAULT)) < 0) {
fprintf(stderr , "Unable to open HDF file for input. Aborting.\n");
return -1;
}
/* open the dataset for reading */
if ((dset = H5Dopen(fHfile , dset_name)) < 0) {
fprintf(stderr , "Unable to open dataset\n");
return -1;
}
dtype = H5Dget_type(dset);
if (dtype < 0) {
fprintf(stderr , "Unable to open datatype\n");
return -1;
}
if (H5Tget_class(dtype) != H5T_INTEGER) {
fprintf(stderr , "Data is not integer. Cannot convert to GIF\n");
return -1;
}
if (H5Tget_size(dtype) != 1) {
fprintf(stderr , "Data is %d bytes per pixel. Cannot convert to GIF\n",(int)H5Tget_size(dtype));
return -1;
}
/* get the dataspace */
if ((dspace = H5Dget_space(dset)) < 0) {
fprintf(stderr , "Unable to get dataspace\n");
return -1;
}
/* get the dimension size of the image */
if (H5Sget_simple_extent_dims(dspace , image_size , NULL) <0 ) {
fprintf(stderr , "Unable to get dimension info\n");
return -1;
}
/* size needed to store the image */
datasize = image_size[0] * image_size[1];
/* allocate memory to store the image */
if ((*data = (BYTE*) malloc((size_t)datasize)) == NULL) {
fprintf(stderr , "Out of memory, exiting");
return -1;
}
/* get the actual image */
if (H5Dread(dset , H5Tget_native_type(dtype, H5T_DIR_ASCEND) , H5S_ALL , H5S_ALL , H5P_DEFAULT , *data) < 0) {
fprintf(stderr , "Unable to read data \n");
cleanup(*data);
return -1;
}
if (pal_exist) {
hsize_t loc_pal_size[2];
hsize_t pal_datasize;
BYTE *temp_buf;
hsize_t temp_size;
/* get the palette dataset */
if ((pal_set = H5Dopen(fHfile , pal_name)) < 0) {
fprintf(stderr , "Unable to open dataset\n");
pal_exist = 0;
return -1;
}
pal_dtype = H5Dget_type(pal_set);
if (dtype < 0) {
fprintf(stderr , "Unable to open palette datatype\n");
return -1;
}
if (H5Tget_class(pal_dtype) != H5T_INTEGER) {
fprintf(stderr , "Palette data is not integer. Cannot convert to GIF\n");
return -1;
}
if (H5Tget_size(pal_dtype) != 1) {
fprintf(stderr , "Palette data is %d bytes per pixel. Cannot convert to GIF\n",(int)H5Tget_size(pal_dtype));
return -1;
}
/* get the dataspace */
if ((pal_space = H5Dget_space(pal_set)) < 0) {
fprintf(stderr , "Unable to get dataspace\n");
pal_exist = 0;
return -1;
}
/* get the dimension size of the palette. */
if (H5Sget_simple_extent_dims(pal_space , loc_pal_size , NULL) !=2 ) {
fprintf(stderr , "Unable to get dimension info\n");
pal_exist = 0;
return -1;
}
/* size needed to store the image */
pal_datasize = loc_pal_size[0] * loc_pal_size[1];
/* copy stuff into a temp buffer and then copy 256*3 elements to palette */
temp_size = H5Dget_storage_size(pal_set);
temp_buf = (BYTE*) malloc ((size_t)temp_size * sizeof(BYTE));
/*
* make sure that the palette is actually 256 X 3 so that we don't
* create overflows
*/
if (pal_datasize > 256 * 3) {
fprintf(stderr , "Palette seems to be more than 256X3 bytes\n");
fprintf(stderr , "Truncating palette to 256 colors. This might cause a problem with the final image\n");
pal_datasize = 256 * 3;
}
/* get the actual palette */
if (H5Dread(pal_set , H5Tget_native_type(pal_dtype, H5T_DIR_ASCEND) , H5S_ALL , H5S_ALL , H5P_DEFAULT , temp_buf) < 0) {
fprintf(stderr , "Unable to read data \n");
cleanup(*data);
cleanup(temp_buf);
return -1;
}
/* copy stuff into the actual palette */
memcpy(palette , temp_buf , (size_t)pal_datasize);
/* get rid of the temp memory */
cleanup(temp_buf);
/* end of if (pal_exist) */
} else {
int i;
/*
* if palette does not exist we just go ahead and create a uniform
* greyscale palette
*/
for (i = 0 ; i < 256 ; i++) {
palette[i][0] = 255 - i;
palette[i][1] = 255 - i;
palette[i][2] = 255 - i;
}
}
/* close everything */
H5Dclose(dset);
H5Sclose(dspace);
H5Fclose(fHfile);
return 0;
}
|
