summaryrefslogtreecommitdiffstats
path: root/tools/h5copy/testh5copy.sh
blob: e98e67e1c1583919168765bc8c82191262e8126c (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5.  The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html.  COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page.  It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#
# Tests for the h5copy tool
#
# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org)
# Thursday, July 20, 2006
#

TESTNAME=h5copy
EXIT_SUCCESS=0
EXIT_FAILURE=1

# Test files
HDF_FILE1=h5copytst.h5
HDF_FILE2=h5copy_ref.h5
HDF_EXT_SRC_FILE=h5copy_extlinks_src.h5
HDF_EXT_TRG_FILE=h5copy_extlinks_trg.h5

H5COPY=h5copy               # The tool name
H5COPY_BIN=`pwd`/$H5COPY    # The path of the tool binary
H5DIFF=h5diff               # The h5diff tool name 
H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF    # The path of the h5diff tool binary
H5LS=h5ls                   # The h5ls tool name 
H5LS_ARGS=-Svr              # Arguments to the h5ls tool
H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary
CMP='cmp -s'
DIFF='diff -c'

nerrors=0
verbose=yes
h5haveexitcode=yes	    # default is yes

# The build (current) directory might be different than the source directory.
if test -z "$srcdir"; then
    srcdir=.
fi
INDIR=$srcdir/testfiles
OUTDIR=./testfiles

test -d $OUTDIR || mkdir $OUTDIR

# RUNSERIAL is used. Check if it can return exit code from executalbe correctly.
if [ -n "$RUNSERIAL_NOEXITCODE" ]; then
    echo "***Warning*** Serial Exit Code is not passed back to shell corretly."
    echo "***Warning*** Exit code checking is skipped."
    h5haveexitcode=no
fi

# Print a "SKIP" message
SKIP() {
	 TESTING $H5COPY $@
	  echo  " -SKIP-"
}

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
TESTING() 
{
    SPACES="                                                               "
    echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
}

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY() 
{
    SPACES="                                                               "
    echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY_H5LS() 
{
    SPACES="                                                               "
    echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Run a test and print PASS or *FAIL*. If h5copy can complete
# with exit status 0, consider it pass. If a test fails then increment
# the `nerrors' global variable.
# Assumed arguments:
# $1 is -i
# $2 is input file
# $3 is -o
# $4 is output file
# $* everything else arguments for h5copy.

TOOLTEST() 
{
     runh5diff=yes
     if [ "$1" = -i ]; then
      inputfile=$2
     else
      runh5diff=no
     fi
     if [ "$3" = -o ]; then
      outputfile=$4
     else 
      runh5diff=no
     fi
  
    TESTING $H5COPY $@
    (
    echo "#############################"
    echo " output for '$H5COPY $@'"
    echo "#############################"
    $RUNSERIAL $H5COPY_BIN $@
    ) > output.out
    RET=$?
    if [ $RET != 0 ]; then
        echo "*FAILED*"
        echo "failed result is:"
        cat output.out
        nerrors="`expr $nerrors + 1`"
    else
        echo " PASSED"

        # Clean up output file
        if test -z "$HDF5_NOCLEANUP"; then
           rm -f output.out
        fi
    fi
    
    if [ $runh5diff != no ]; then
     H5DIFFTEST $inputfile $outputfile $7 $9
    fi
}


TOOLTEST_FAIL() 
{
     runh5diff=yes
     if [ "$1" = -i ]; then
      inputfile=$2
     else
      runh5diff=no
     fi
     if [ "$3" = -o ]; then
      outputfile=$4
     else 
      runh5diff=no
     fi
  
    TESTING $H5COPY $@
    (
    echo "#############################"
    echo " output for '$H5COPY $@'"
    echo "#############################"
    $RUNSERIAL $H5COPY_BIN $@
    ) > output.out
    RET=$?
    if [ $RET != 0 ]; then
        echo "*FAILED*"
        echo "failed result is:"
        cat output.out
        nerrors="`expr $nerrors + 1`"
    else
        echo " PASSED"

        # Clean up output file
        if test -z "$HDF5_NOCLEANUP"; then
           rm -f output.out
        fi
    fi
   
    if [ $runh5diff != no ]; then
     H5DIFFTEST_FAIL $inputfile $outputfile $7 $9
    fi
}


# Call the h5diff tool
#
H5DIFFTEST() 
{
    VERIFY  $@
    $RUNSERIAL $H5DIFF_BIN -q "$@" 
    RET=$?
    if [ $RET != 0 ] ; then
         echo "*FAILED*"
         nerrors="`expr $nerrors + 1`"
    else
         echo " PASSED"
    fi
}

# Call the h5diff tool with a call that is expected to fail
#
H5DIFFTEST_FAIL() 
{
    VERIFY  $@
    $RUNSERIAL $H5DIFF_BIN -q "$@" 
    RET=$?

    if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then
         echo "*FAILED*"
         nerrors="`expr $nerrors + 1`"
    else
         echo " PASSED"
    fi
}

# Call the h5ls tool to verify the correct output data in the destination file
#
H5LSTEST() 
{
    expect="$INDIR/`basename $1 .h5`.ls"
    actual="$OUTDIR/`basename $1 .h5`.out"

    # Stderr is included in stdout so that the diff can detect
    # any unexpected output from that stream too.
    #
    # Note:  The modification time and storage utilization are masked off
    #   so that the output is more portable
    VERIFY_H5LS  $@
    (
      echo "#############################"
      echo "Expected output for '$H5LS $@'" 
      echo "#############################"
      $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
    ) 2>&1 |sed 's/Modified:.*/Modified:  XXXX-XX-XX XX:XX:XX XXX/' |sed 's/Storage:.*/Storage:   <details removed for portability>/' >$actual


   if [ ! -f $expect ]; then
    # Create the expect file if it doesn't yet exist.
    echo " CREATED"
    cp $actual $expect
   elif $CMP $expect $actual; then
      echo " PASSED"
   else
      echo "*FAILED*"
      echo "    Expected result (*.ls) differs from actual result (*.out)"
      nerrors="`expr $nerrors + 1`"
      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
   fi

   # Clean up output file
   if test -z "$HDF5_NOCLEANUP"; then
      rm -f $actual $actual_err
   fi
}

# Copy single datasets of various forms from one group to another,
#       adding object copied to the destination file each time
#
# Assumed arguments:
# <none>
COPY_OBJECTS() 
{
    TESTFILE="$INDIR/$HDF_FILE1"
    FILEOUT="$OUTDIR/`basename $HDF_FILE1 .h5`.out.h5"

    # Remove any output file left over from previous test run
    rm -f $FILEOUT

    echo "Testing from `basename $TESTFILE` to `basename $FILEOUT` for the following tests:"
    echo "Test copying various forms of datasets"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple     -d simple
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk      -d chunk
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact    -d compact
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d compound
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl   -d named_vl
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl  -d nested_vl

    echo "Test copying dataset within group in source file to root of destination"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets/simple  -d simple_top

    echo "Test copying & renaming dataset"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d rename

    echo "Test copying empty, 'full' & 'nested' groups"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_empty  -d grp_empty
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_dsets
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_nested -d grp_nested

    echo "Test copying dataset within group in source file to group in destination"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple  -d /grp_dsets/simple_group

    echo "Test copying & renaming group"
    TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_rename

    echo "Test copying 'full' group hierarchy into group in destination file"
    TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d /grp_rename/grp_dsets

    echo "Test copying objects into group hier. that doesn't exist yet in destination file"
    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B1/simple
    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B2/simple2
    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple    -d /C/D/simple
    TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets
    TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested

    # Verify that the file created above is correct
    H5LSTEST $FILEOUT

    # Remove output file created, if the "no cleanup" environment variable is
    #   not defined
    if test -z "$HDF5_NOCLEANUP"; then
        rm -f $FILEOUT
    fi
}

# Copy references in various way.
# adding to the destination file each time compare the result
#
# Assumed arguments:
# <none>
COPY_REFERENCES() 
{
    TESTFILE="$INDIR/$HDF_FILE2"
    FILEOUT="$OUTDIR/`basename $HDF_FILE2 .h5`.out.h5"

    # Remove any output file left over from previous test run
    rm -f $FILEOUT

    echo "Test copying object and region references"
    TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY

    # Verify that the file created above is correct
    H5LSTEST $FILEOUT

    # Remove output file created, if the "no cleanup" environment variable is
    #   not defined
    if test -z "$HDF5_NOCLEANUP"; then
        rm -f $FILEOUT
    fi
}

# Copy external links.
# adding to the destination file each time compare the result
#
# Assumed arguments:
# <none>
COPY_EXT_LINKS() 
{
    TESTFILE="$INDIR/$HDF_EXT_SRC_FILE"
    FILEOUT="$OUTDIR/`basename $HDF_EXT_SRC_FILE .h5`.out.h5"

    # Remove any output file left over from previous test run
    rm -f $FILEOUT

    echo "Test copying external link directly without -f ext"
    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_dset -d /copy1_dset

    echo "Test copying external link directly with -f ext"
    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_dset -d /copy2_dset

    echo "Test copying dangling external link (no obj) directly without -f ext"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1

    echo "Test copying dangling external link (no obj) directly with -f ext"
    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2

    echo "Test copying dangling external link (no file) directly without -f ext"
    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1

    echo "Test copying dangling external link (no file) directly with -f ext"
    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2

    echo "Test copying a group contains external links without -f ext"
    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group

    echo "Test copying a group contains external links with -f ext"
    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -f ext -s /group_ext -d /copy2_group

    # Verify that the file created above is correct
    H5LSTEST $FILEOUT

    # Remove output file created, if the "no cleanup" environment variable is
    #   not defined
    if test -z "$HDF5_NOCLEANUP"; then
        rm -f $FILEOUT
    fi
}

##############################################################################
###           T H E   T E S T S                                            ###
##############################################################################

COPY_OBJECTS 
COPY_REFERENCES
COPY_EXT_LINKS


if test $nerrors -eq 0 ; then
    echo "All $TESTNAME tests passed."
    exit $EXIT_SUCCESS
else
    echo "$TESTNAME tests failed with $nerrors errors."
    exit $EXIT_FAILURE
fi