1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
*
* Data and structure definitions for h5import
*
*/
#ifndef H5IMPORT_H__
#define H5IMPORT_H__
/*
* state table tokens
*/
#define FILNAME 0
/* filename */
#define OPT_o 1
/* output filename */
#define OPT_c 2 /* configuration filename */
#define OPT_h 3 /* request for explanation */
#define OPT_d 4 /* dimensions */
#define OPT_p 5 /* pathname */
#define OPT_t 6 /* data type */
#define OPT_s 7 /* data size */
#define ERR 20 /* invalid token */
#define MAX_GROUPS_IN_PATH 20
#define MAX_PATH_NAME_LENGTH 255
#define NUM_KEYS 14
#define MIN_NUM_DIMENSION 1
#define MAX_NUM_DIMENSION 32
#define BASE_10 10
#define CHUNK 0
#define COMPRESS 1
#define EXTEND 2
#define EXTERNAL 3
#define DIM 4
#define RANK 5
#define PATH 6
#define INPUT_CLASS 7
#define INPUT_SIZE 8
#define OUTPUT_CLASS 9
#define OUTPUT_SIZE 10
#define OUTPUT_ARCH 11
#define OUTPUT_B_ORDER 12
#define COMPRESS_PARAM 13
/* data types */
#define H5DT_INT8 signed char
#define H5DT_INT16 short
#define H5DT_INT32 int
#define H5DT_FLOAT32 float
#define H5DT_FLOAT64 double
#define VOIDP void*
#define H5DT_UINT8 unsigned char
#define H5DT_UINT16 unsigned short
#define H5DT_UINT32 unsigned int
#define H5DT_INT64 long long
#define H5DT_UINT64 unsigned H5DT_INT64
struct path_info
{
char group[MAX_GROUPS_IN_PATH][MAX_PATH_NAME_LENGTH];
int count;
};
struct Input
{
struct path_info path;
int inputClass;
int inputSize;
int rank;
hsize_t* sizeOfDimension;
int outputClass;
int outputSize;
int outputArchitecture;
int outputByteOrder;
hsize_t* sizeOfChunk;
hsize_t* maxsizeOfDimension;
int compressionType;
int compressionParam;
char *externFilename;
VOIDP data;
int configOptionVector[NUM_KEYS];
};
struct infilesformat
{
char datafile[255];
char configfile[255];
struct Input in;
int config; /* Configfile present? No - 0. Yes - 1 */
};
struct Options
{
struct infilesformat infiles[30]; /* structure to hold the list of input file names. Limited to 30*/
char outfile[256]; /* output file name */
int fcount; /* number of input files */
};
char keytable[NUM_KEYS][30] = {
"PATH",
"INPUT-CLASS",
"INPUT-SIZE",
"RANK",
"DIMENSION-SIZES",
"OUTPUT-CLASS",
"OUTPUT-SIZE",
"OUTPUT-ARCHITECTURE",
"OUTPUT-BYTE-ORDER",
"CHUNKED-DIMENSION-SIZES",
"COMPRESSION-TYPE",
"COMPRESSION-PARAM",
"EXTERNAL-STORAGE",
"MAXIMUM-DIMENSIONS"
};
static int state_table[15][8] =
{
/* token ordering:
FILNAME OPT_o OPT_c OPT_h OPT_d OPT_p OPT_t OPT_s */
/* state 0: start */
{1, ERR, ERR, 6, ERR, ERR, ERR, ERR},
/* state 1: input files */
{ERR, ERR, 2, ERR, 7, ERR, ERR, ERR},
/* state 2: -c[onfigfile] */
{3, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 3: configfile */
{1, 4, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 4: -o[utfile] */
{5, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 5: outfile */
{ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 6: -h[elp] */
{ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 7: -d[ims] */
{8, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 8: dimensions */
{1, 4, ERR, ERR, ERR, 9, 11, 13},
/* state 9: -p[ath] */
{10, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 10: path name */
{1, 4, ERR, ERR, ERR, ERR, 11, 13},
/* state 11: -t[ype] */
{12, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 12: data type */
{1, 4, ERR, ERR, ERR, ERR, ERR, 13},
/* state 13: -s[ize] */
{14, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
/* state 14: data size */
{1, 4, ERR, ERR, ERR, ERR, ERR, ERR}
};
/*
*
* Function declarations for h5import
*
*/
void usage(char *);
void setDefaultValues(struct Input *in, int count);
void help(char *);
static int gtoken(char *s);
static int process(struct Options *opt);
static int processConfigurationFile(char *infile, struct Input *in, FILE **strm);
static int mapKeywordToIndex(char *key);
static int parsePathInfo(struct path_info *path, char *strm);
static int parseDimensions(struct Input *in, char *strm);
static int getInputSize(struct Input *in, int ival);
static int getInputClass(struct Input *in, char * strm);
static int InputClassStrToInt(char *temp);
static int getRank(struct Input *in, FILE** strm);
static int getDimensionSizes(struct Input *in, FILE** strm);
static int getOutputSize(struct Input *in, FILE** strm);
static int getOutputClass(struct Input *in, FILE** strm);
static int OutputClassStrToInt(char *temp);
static int getOutputArchitecture(struct Input *in, FILE** strm);
static int OutputArchStrToInt(char *temp);
static int getOutputByteOrder(struct Input *in, FILE** strm);
static int OutputByteOrderStrToInt(char *temp);
static int getChunkedDimensionSizes(struct Input *in, FILE **strm);
static int getCompressionType(struct Input *in, FILE** strm);
static int CompressionTypeStrToInt(char *temp);
static int getCompressionParameter(struct Input *in, FILE** strm);
static int getExternalFilename(struct Input *in, FILE** strm);
static int getMaximumDimensionSizes(struct Input *in, FILE **strm);
static int processDataFile(char *infile, struct Input *in, FILE **strm, hid_t file_id);
static int readIntegerData(FILE **strm, struct Input *in);
static int readFloatData(FILE **strm, struct Input *in);
static int allocateIntegerStorage(struct Input *in);
static int allocateFloatStorage(struct Input *in);
hid_t createOutputDataType(struct Input *in);
hid_t createInputDataType(struct Input *in);
static int readUIntegerData(FILE **strm, struct Input *in);
static int allocateUIntegerStorage(struct Input *in);
static int validateConfigurationParameters(struct Input * in);
static int processStrData(FILE **strm, struct Input *in, hid_t file_id);
#endif /* H5IMPORT_H__ */
|
