summaryrefslogtreecommitdiffstats
path: root/tools/h5repack/h5repack.sh.in
blob: 17c68691e769e334dac85203316224feefbd06e7 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
#! /bin/sh
#
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5.  The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html.  COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page.  It can also be found at
# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
#
# Tests for the h5repack tool

# Determine if SZIP has the encoder available
USE_FILTER_SZIP_ENCODER="@USE_FILTER_SZIP_ENCODER@"
USE_FILTER_SZIP="@USE_FILTER_SZIP@"

H5REPACK=h5repack               # The tool name
H5REPACK_BIN=`pwd`/$H5REPACK    # The path of the tool binary

H5DIFF=../h5diff/h5diff         # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF        # The path of the h5diff  tool binary

nerrors=0
verbose=yes

# The build (current) directory might be different than the source directory.
#
if test -z "$srcdir"; then
   srcdir=.
fi

test -d ../testfiles || mkdir ../testfiles

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
#
TESTING() {
   SPACES="                                                               "
   echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY() {
 SPACES="                                                               "
 echo "Testing h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Print a message that a test has been skipped (because a required filter
# was unavailable)
SKIP() {
    TESTING $H5REPACK $@
    echo " -SKIP-"
}

# Call the h5diff tool
#
DIFFTEST() 
{
    VERIFY  $@
    if [ "`uname -s`" = "TFLOPS O/S" ]; then
	$RUNSERIAL $H5DIFF_BIN $@
    else
	$RUNSERIAL $H5DIFF_BIN "$@"
    fi
    RET=$?
    if [ $RET != 0 ] ; then
 	echo "*FAILED*"
         nerrors="`expr $nerrors + 1`"
    else
         echo " PASSED"
    fi
				    
}
										
# Call h5repack
#
TOOLTEST() 
{
    # Run test.
    # Tflops interprets "$@" as "" when no parameter is given (e.g., the
    # case of missing file name).  Changed it to use $@ till Tflops fixes it.
    TESTING $H5REPACK $@

    infile=$srcdir/../testfiles/$1
    outfile=out.$1
    shift
    if [ "`uname -s`" = "TFLOPS O/S" ]; then
	$RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile $@
    else
	$RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
    fi

    RET=$?
    if [ $RET != 0 ] ; then
	echo "*FAILED*"
	nerrors="`expr $nerrors + 1`"
    else
	echo " PASSED"
	DIFFTEST $infile $outfile
    fi
    rm -f $outfile
}

#
# The tests
# We use the files generated by h5repacktst
# Each run generates "file4.out.h5" and the tool h5diff is used to
# compare the input and output files
#

# See which filters are usable (and skip tests for filters we
# don't have).  Do this by searching H5pubconf.h to see which
# filters are defined.
# A filter value of 3 means the filter can read and write, 2
# is read-only, 1 is write-only, and 0 is not present.

# copy files
TOOLTEST test1.h5
TOOLTEST test3.h5


arg="test4.h5"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg
else
 SKIP $arg 
fi

#TOOLTEST test5.h5

# remove all  filters
TOOLTEST test4.h5 -f NONE

# remove one filter
arg="test4.h5 -f dset_gzip:NONE"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg 
else
 SKIP $arg 
fi

# gzip
arg="test4.h5 -f dset1:GZIP=9"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then 
 TOOLTEST $arg 
else
 SKIP $arg 
fi
TOOLTEST test4.h5 -f GZIP=1

# szip
arg1="test4.h5 -f dset1:SZIP=8"
arg2="test4.h5 -f SZIP=8"
if test $USE_FILTER_SZIP_ENCODER = "yes" -a $USE_FILTER_SZIP = "yes" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
else
 SKIP $arg1 
 SKIP $arg2 
fi

# shuffle
arg="test4.h5 -f dset1:SHUF"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg 
else
 SKIP $arg 
fi
TOOLTEST test4.h5 -f SHUF

# fletcher
arg="test4.h5 -f dset1:FLET"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg 
else
 SKIP $arg 
fi
TOOLTEST test4.h5 -f FLET

#layout chunk
arg1="test4.h5 -l dset1:CHUNK=20x10"
arg2="test4.h5 -l CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
else
 SKIP $arg1 
 SKIP $arg2 
fi

#layout compact
arg1="test4.h5 -l dset1:COMPA"
arg2="test4.h5 -l COMPA"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
else
 SKIP $arg1 
 SKIP $arg2 
fi

#layout contiguous
arg1="test4.h5 -l dset1:CONTI"
arg2="test4.h5 -l CONTI"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
else
 SKIP $arg1 
 SKIP $arg2 
fi

#conversions
arg1="test4.h5 -l dset_compact:CONTI"
arg2="test4.h5 -l dset_compact:CHUNK=2x5"
arg3="test4.h5 -l dset_compact:COMPA"
arg4="test4.h5 -l dset_contiguous:COMPA"
arg5="test4.h5 -l dset_contiguous:CHUNK=3x6"
arg6="test4.h5 -l dset_contiguous:CONTI"
arg7="test4.h5 -l dset_chunk:COMPA"
arg8="test4.h5 -l dset_chunk:CONTI"
arg9="test4.h5 -l dset_chunk:CHUNK=18x13"
if test $USE_FILTER_SZIP_ENCODER = "yes" -o $USE_FILTER_SZIP = "no" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
 TOOLTEST $arg3 
 TOOLTEST $arg4 
 TOOLTEST $arg5 
 TOOLTEST $arg6 
 TOOLTEST $arg7 
 TOOLTEST $arg8 
 TOOLTEST $arg9 
else
 SKIP $arg1 
 SKIP $arg2 
 SKIP $arg3 
 SKIP $arg4 
 SKIP $arg5 
 SKIP $arg6 
 SKIP $arg7 
 SKIP $arg8 
 SKIP $arg9 
fi

#filters
arg1="test4.h5 -f dset1:SHUF -f dset1,dset2:GZIP=6"
arg2="test4.h5 -l dset1:CHUNK=20x10 -f dset1,dset2:SZIP=8"
if test $USE_FILTER_SZIP_ENCODER = "yes" -a $USE_FILTER_SZIP = "yes"; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
elif test $USE_FILTER_SZIP = "yes" ; then    # SZIP has no encoder
 SKIP $arg1
 SKIP $arg2
else        # SZIP is absent
 TOOLTEST $arg1 
 SKIP $arg2 
fi

#filter conversions
arg1="test4.h5 -f dset_gzip:SZIP=8"
arg2="test4.h5 -f dset_szip:GZIP=1"
arg3="test4.h5 -f dset_all:GZIP=1"
if test $USE_FILTER_SZIP_ENCODER = "yes" -a $USE_FILTER_SZIP = "yes" ; then
 TOOLTEST $arg1 
 TOOLTEST $arg2 
 TOOLTEST $arg3 
elif test $USE_FILTER_SZIP = "yes" ; then    # SZIP has no encoder
 SKIP $arg1 
 SKIP $arg2 
 SKIP $arg3 
else        # SZIP is absent
 SKIP $arg1
 TOOLTEST $arg2
 TOOLTEST $arg3
fi

#limit
TOOLTEST test4.h5 -f GZIP=1 -m 1024

#file
arg="test4.h5 -e ../testfiles/h5repack_info.txt"
if test $USE_FILTER_SZIP_ENCODER = "yes" -a $USE_FILTER_SZIP = "yes" ; then
 TOOLTEST $arg 
else
 SKIP $arg 
fi

if test $nerrors -eq 0 ; then
   echo "All $H5REPACK tests passed."
fi

exit $nerrors