1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
|
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#
# Tests for the h5repack tool
#
# Modification:
# Pedro Vicente Nunes, 11/15/2006
# Added $FILEN variables for file names
#
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
USE_FILTER_NBIT="@USE_FILTER_NBIT@"
USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
H5REPACK=h5repack # The tool name
H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary
H5DIFF=../h5diff/h5diff # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
H5DETECTSZIP=testh5repack_detect_szip # The tool name
H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP # The path of the tool binary
INFO_FILE=../testfiles/info.h5repack
FILE0=h5repack_fill.h5
FILE1=h5repack_objs.h5
FILE2=h5repack_attr.h5
FILE3=h5repack_hlink.h5
FILE4=h5repack_layout.h5
FILE5=h5repack_early.h5
FILE7=h5repack_szip.h5
FILE8=h5repack_deflate.h5
FILE9=h5repack_shuffle.h5
FILE10=h5repack_fletcher.h5
FILE11=h5repack_filters.h5
FILE12=h5repack_nbit.h5
FILE13=h5repack_soffset.h5
nerrors=0
verbose=yes
# The build (current) directory might be different than the source directory.
#
if test -z "$srcdir"; then
srcdir=.
fi
test -d ../testfiles || mkdir ../testfiles
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
#
TESTING() {
SPACES=" "
echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY() {
SPACES=" "
echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Print a message that a test has been skipped (because a required filter
# was unavailable)
SKIP() {
TESTING $H5REPACK $@
echo " -SKIP-"
}
# Call the h5diff tool
#
DIFFTEST()
{
VERIFY $@
if [ "`uname -s`" = "TFLOPS O/S" ]; then
$RUNSERIAL $H5DIFF_BIN -q $@
else
$RUNSERIAL $H5DIFF_BIN -q "$@"
fi
RET=$?
if [ $RET != 0 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
fi
}
# Call h5repack
#
TOOLTEST()
{
# Run test.
# Tflops interprets "$@" as "" when no parameter is given (e.g., the
# case of missing file name). Changed it to use $@ till Tflops fixes it.
TESTING $H5REPACK $@
infile=$srcdir/../testfiles/$1
path=`pwd`
outfile=$path/out.$1
shift
if [ "`uname -s`" = "TFLOPS O/S" ]; then
$RUNSERIAL $H5REPACK_BIN $@ $infile $outfile
else
$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
fi
RET=$?
if [ $RET != 0 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
DIFFTEST $infile $outfile
fi
rm -f $outfile
}
#
# The tests
# We use the files generated by h5repacktst
# Each run generates "<file>.out.h5" and the tool h5diff is used to
# compare the input and output files
#
# the tests are the same as the program h5repacktst, but run from the CLI
#
# See which filters are usable (and skip tests for filters we
# don't have). Do this by searching H5pubconf.h to see which
# filters are defined.
# detect whether the encoder is present.
USE_FILTER_SZIP_ENCODER="no";
if test $USE_FILTER_SZIP = "yes"; then
USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
fi
# copy files (these files have no filters)
TOOLTEST $FILE0
TOOLTEST $FILE1
TOOLTEST $FILE2
TOOLTEST $FILE3
TOOLTEST $FILE4
TOOLTEST $FILE5
# use $FILE4 to write some filters (this file has no filters)
# gzip with individual object
arg="$FILE4 -f dset1:GZIP=1 -l dset1:CHUNK=20x10"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# gzip for all
arg="$FILE4 -f GZIP=1"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# szip with individual object
arg="$FILE4 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# szip for all
arg="$FILE4 -f SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# shuffle with individual object
arg="$FILE4 -f dset2:SHUF -l dset2:CHUNK=20x10"
if test $USE_FILTER_SHUFFLE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# shuffle for all
arg="$FILE4 -f SHUF"
if test $USE_FILTER_SHUFFLE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# fletcher32 with individual object
arg="$FILE4 -f dset2:FLET -l dset2:CHUNK=20x10"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# fletcher32 for all
arg="$FILE4 -f FLET"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# all filters
arg="$FILE4 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
###########################################################
# the following tests assume the input files have filters
###########################################################
# szip copy
arg="$FILE7"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# szip remove
arg="$FILE7 --filter=dset_szip:NONE"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# deflate copy
arg="$FILE8"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# deflate remove
arg="$FILE8 -f dset_deflate:NONE"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# shuffle copy
arg="$FILE9"
if test $USE_FILTER_SHUFFLE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# shuffle remove
arg="$FILE9 -f dset_shuffle:NONE"
if test $USE_FILTER_SHUFFLE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# fletcher32 copy
arg="$FILE10"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# fletcher32 remove
arg="$FILE10 -f dset_fletcher32:NONE"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# nbit copy
arg="$FILE12"
if test $USE_FILTER_NBIT != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# nbit remove
arg="$FILE12 -f dset_nbit:NONE"
if test $USE_FILTER_NBIT != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# nbit add
arg="$FILE12 -f dset_int31:NBIT"
if test $USE_FILTER_NBIT != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# scaleoffset copy
arg="$FILE13"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# scaleoffset add
arg="$FILE13 -f dset_none:SOFF=31,IN"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# scaleoffset remove
arg="$FILE13 -f dset_scaleoffset:NONE"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# remove all filters
arg="$FILE11 -f NONE"
if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
#filter conversions
arg="$FILE8 -f dset_deflate:SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
arg="$FILE7 -f dset_szip:GZIP=1"
if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
#limit
arg="$FILE4 -f GZIP=1 -m 1024"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
#file
arg="$FILE4 -e $INFO_FILE"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
#########################################################
# layout options (these files have no filters)
#########################################################
TOOLTEST $FILE4 --layout=dset2:CHUNK=20x10
TOOLTEST $FILE4 -l CHUNK=20x10
TOOLTEST $FILE4 -l dset2:CONTI
TOOLTEST $FILE4 -l CONTI
TOOLTEST $FILE4 -l dset2:COMPA
TOOLTEST $FILE4 -l COMPA
################################################################
# layout conversions (file has no filters)
###############################################################
TOOLTEST $FILE4 -l dset_compact:CONTI
TOOLTEST $FILE4 -l dset_compact:CHUNK=2x5
TOOLTEST $FILE4 -l dset_compact:COMPA
TOOLTEST $FILE4 -l dset_contiguous:COMPA
TOOLTEST $FILE4 -l dset_contiguous:CHUNK=3x6
TOOLTEST $FILE4 -l dset_contiguous:CONTI
TOOLTEST $FILE4 -l dset_chunk:COMPA
TOOLTEST $FILE4 -l dset_chunk:CONTI
TOOLTEST $FILE4 -l dset_chunk:CHUNK=18x13
# Native option
TOOLTEST $FILE1 -n
# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
arg="$FILE4 --layout CHUNK=20x10 --filter GZIP=1 --threshold=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
arg="$FILE4 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
# several global filters
arg="$FILE4 --filter GZIP=1 --filter SHUF"
if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then
SKIP $arg
else
TOOLTEST $arg
fi
if test $nerrors -eq 0 ; then
echo "All $H5REPACK tests passed."
fi
exit $nerrors
|