1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <stdlib.h>
#include <string.h>
#include <stdio.h>
#include "H5private.h"
#include "h5repack.h"
/*-------------------------------------------------------------------------
* Function: check_objects
*
* Purpose: locate all HDF5 objects in the file and compare with user
* supplied list
*
* Return: 0, ok, -1 no
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: September, 23, 2003
*
*-------------------------------------------------------------------------
*/
int check_objects(const char* fname,
pack_opt_t *options)
{
hid_t fid;
int nobjects, i;
trav_info_t *info=NULL;
/*-------------------------------------------------------------------------
* open the file
*-------------------------------------------------------------------------
*/
/* disable error reporting */
H5E_BEGIN_TRY {
/* Open the files */
if ((fid=H5Fopen(fname,H5F_ACC_RDONLY,H5P_DEFAULT))<0 ){
printf("h5repack: <%s>: No such file or directory\n", fname );
exit(1);
}
/* enable error reporting */
} H5E_END_TRY;
/*-------------------------------------------------------------------------
* get the number of objects in the file
*-------------------------------------------------------------------------
*/
if ((nobjects = h5trav_getinfo(fid, NULL ))<0) {
printf("h5repack: <%s>: Could not obtain object list\n", fname );
return -1;
}
/*-------------------------------------------------------------------------
* get the list of objects in the file
*-------------------------------------------------------------------------
*/
if ((info = (trav_info_t*) malloc( nobjects * sizeof(trav_info_t)))==NULL){
printf("h5repack: <%s>: Could not allocate object list\n", fname );
return -1;
}
if (h5trav_getinfo(fid, info )<0) {
printf("h5repack: <%s>: Could not obtain object list\n", fname );
return -1;
}
/*-------------------------------------------------------------------------
* compare with user supplied list
*-------------------------------------------------------------------------
*/
if (options->verbose)
printf("Opening file <%s>. Searching for objects to modify...\n",fname);
for ( i = 0; i < options->op_tbl->nelems; i++)
{
char* obj_name=options->op_tbl->objs[i].path;
if (options->verbose)
printf(PFORMAT1,"","",obj_name);
/* the input object names are present in the file and are valid */
if (h5trav_getindex(obj_name,nobjects,info)<0)
{
printf("\nError: Could not find <%s> in file <%s>. Exiting...\n",
obj_name,fname);
H5Fclose(fid);
h5trav_freeinfo(info,nobjects);
exit(1);
}
if (options->verbose)
printf("...Found\n");
}
/*-------------------------------------------------------------------------
* free
*-------------------------------------------------------------------------
*/
H5Fclose(fid);
h5trav_freeinfo(info,nobjects);
return 0;
}
/*-------------------------------------------------------------------------
* Function: print_objlist
*
* Purpose: print list of objects in file
*
* Return: void
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: October 23, 2003
*
*-------------------------------------------------------------------------
*/
void print_objlist(const char *filename,
int nobjects,
trav_info_t *info )
{
int i;
printf("File <%s>: # of entries = %d\n", filename, nobjects );
for ( i = 0; i < nobjects; i++)
{
switch ( info[i].type )
{
case H5G_GROUP:
printf(" %-10s %s\n", "group", info[i].name );
break;
case H5G_DATASET:
printf(" %-10s %s\n", "dataset", info[i].name );
break;
case H5G_TYPE:
printf(" %-10s %s\n", "datatype", info[i].name );
break;
case H5G_LINK:
printf(" %-10s %s\n", "link", info[i].name );
break;
default:
printf(" %-10s %s\n", "User defined object", info[i].name );
break;
}
}
}
|
