1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "hdf5.h"
#include "h5test.h"
#include "h5repack.h"
/*-------------------------------------------------------------------------
* Function: has_filter
*
* Purpose: verify if a filter is present in the property list DCPL_ID
*
* Return: 1 has, 0 does not, -1 error
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: December 19, 2003
*
*-------------------------------------------------------------------------
*/
int has_filter(hid_t dcpl_id,
H5Z_filter_t filtnin)
{
int nfilters; /* number of filters */
unsigned filt_flags; /* filter flags */
H5Z_filter_t filtn; /* filter identification number */
unsigned cd_values[20]; /* filter client data values */
size_t cd_nelmts; /* filter client number of values */
char f_name[256]; /* filter name */
int have=0; /* flag, filter is present */
int i; /* index */
/* if no information about the input filter is requested return exit */
if (filtnin==-1)
return 1;
/* get information about filters */
if ((nfilters = H5Pget_nfilters(dcpl_id))<0)
return -1;
/* if we do not have filters and the requested filter is NONE, return 1 */
if (!nfilters && filtnin==H5Z_FILTER_NONE)
return 1;
for (i=0; i<nfilters; i++)
{
cd_nelmts = NELMTS(cd_values);
filtn = H5Pget_filter(dcpl_id,
(unsigned)i,
&filt_flags,
&cd_nelmts,
cd_values,
sizeof(f_name),
f_name);
if (filtnin==filtn)
have=1;
}
return have;
}
/*-------------------------------------------------------------------------
* Function: has_layout
*
* Purpose: verify which layout is present in the property list DCPL_ID
*
* H5D_COMPACT = 0
* H5D_CONTIGUOUS = 1
* H5D_CHUNKED = 2
*
* Return: 1 has, 0 does not, -1 error
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: December 30, 2003
*
*-------------------------------------------------------------------------
*/
int has_layout(hid_t dcpl_id,
pack_info_t *obj)
{
hsize_t chsize[64]; /* chunk size in elements */
H5D_layout_t layout; /* layout */
int nfilters; /* number of filters */
int rank; /* rank */
int i; /* index */
/* if no information about the input layout is requested return exit */
if (obj==NULL)
return 1;
/* check if we have filters in the input object */
if ((nfilters = H5Pget_nfilters(dcpl_id))<0)
return -1;
/* a non chunked layout was requested on a filtered object; avoid the test */
if (nfilters && obj->layout!=H5D_CHUNKED)
return 1;
/* get layout */
if ((layout = H5Pget_layout(dcpl_id))<0)
return -1;
if (obj->layout != layout)
return 0;
if (layout==H5D_CHUNKED)
{
if ((rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize/*out*/))<0)
return -1;
if (obj->chunk.rank != rank)
return 0;
for ( i=0; i<rank; i++)
if (chsize[i] != obj->chunk.chunk_lengths[i])
return 0;
}
return 1;
}
/*-------------------------------------------------------------------------
* Function: h5repack_verify
*
* Purpose: verify if the filters specified in the options list are
* present on the OUTPUT file
*
* Return: 1=filter present, 0=filter not present, -1=error
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: December 19, 2003
*
*-------------------------------------------------------------------------
*/
int h5repack_verify(const char *fname,
pack_opt_t *options)
{
hid_t fid; /* file ID */
hid_t dset_id; /* dataset ID */
hid_t dcpl_id; /* dataset creation property list ID */
hid_t space_id; /* space ID */
int ret=1, i, j;
trav_table_t *travt=NULL;
/* open the file */
if ((fid=H5Fopen(fname,H5F_ACC_RDONLY,H5P_DEFAULT))<0 )
return -1;
for ( i=0; i<options->op_tbl->nelems; i++)
{
char* name=options->op_tbl->objs[i].path;
pack_info_t *obj = &options->op_tbl->objs[i];
/*-------------------------------------------------------------------------
* open
*-------------------------------------------------------------------------
*/
if ((dset_id=H5Dopen(fid,name))<0)
goto error;
if ((space_id=H5Dget_space(dset_id))<0)
goto error;
if ((dcpl_id=H5Dget_create_plist(dset_id))<0)
goto error;
if (options->verbose) {
printf(" %-10s %s\n", "dataset",name );
print_filters(dcpl_id);
}
/*-------------------------------------------------------------------------
* filter check
*-------------------------------------------------------------------------
*/
for ( j=0; j<obj->nfilters; j++)
{
if (has_filter(dcpl_id,obj->filter[j].filtn)==0)
ret=0;
}
/*-------------------------------------------------------------------------
* layout check; check only if a filter exists
*-------------------------------------------------------------------------
*/
if (obj->filter[j].filtn>H5Z_FILTER_NONE )
{
if (has_layout(dcpl_id,obj)==0)
ret=0;
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if (H5Pclose(dcpl_id)<0)
goto error;
if (H5Sclose(space_id)<0)
goto error;
if (H5Dclose(dset_id)<0)
goto error;
}
/*-------------------------------------------------------------------------
* check for the "all" objects option
*-------------------------------------------------------------------------
*/
if (options->all_filter==1 || options->all_layout==1)
{
/* init table */
trav_table_init(&travt);
/* get the list of objects in the file */
if (h5trav_gettable(fid,travt)<0)
goto error;
for ( i=0; i<travt->nobjs; i++)
{
char* name=travt->objs[i].name;
switch ( travt->objs[i].type )
{
case H5G_DATASET:
/*-------------------------------------------------------------------------
* open
*-------------------------------------------------------------------------
*/
if ((dset_id=H5Dopen(fid,name))<0)
goto error;
if ((space_id=H5Dget_space(dset_id))<0)
goto error;
if ((dcpl_id=H5Dget_create_plist(dset_id))<0)
goto error;
if (options->verbose) {
printf(" %-10s %s\n", "dataset",name );
print_filters(dcpl_id);
}
/*-------------------------------------------------------------------------
* filter check
*-------------------------------------------------------------------------
*/
if (options->all_filter==1 ){
if (has_filter(dcpl_id,options->filter_g.filtn)==0)
ret=0;
}
/*-------------------------------------------------------------------------
* layout check
*-------------------------------------------------------------------------
*/
if (options->all_layout==1){
pack_info_t pack;
init_packobject(&pack);
pack.layout=options->layout_g;
pack.chunk=options->chunk_g;
if (has_layout(dcpl_id,&pack)==0)
ret=0;
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if (H5Pclose(dcpl_id)<0)
goto error;
if (H5Sclose(space_id)<0)
goto error;
if (H5Dclose(dset_id)<0)
goto error;
break;
default:
break;
} /* switch */
} /* i */
/* free table */
trav_table_free(travt);
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if (H5Fclose(fid)<0)
return -1;
return ret;
error:
H5E_BEGIN_TRY {
H5Pclose(dcpl_id);
H5Sclose(space_id);
H5Dclose(dset_id);
H5Fclose(fid);
trav_table_free(travt);
} H5E_END_TRY;
return -1;
}
/*-------------------------------------------------------------------------
* Function: h5repack_cmpdcpl
*
* Purpose: compare 2 files for identical property lists of all objects
*
* Return: 1=identical, 0=not identical, -1=error
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: December 31, 2003
*
*-------------------------------------------------------------------------
*/
int h5repack_cmpdcpl(const char *fname1,
const char *fname2)
{
hid_t fid1; /* file ID */
hid_t fid2; /* file ID */
hid_t dset1; /* dataset ID */
hid_t dset2; /* dataset ID */
hid_t dcpl1; /* dataset creation property list ID */
hid_t dcpl2; /* dataset creation property list ID */
trav_table_t *travt1=NULL;
trav_table_t *travt2=NULL;
int ret=1, i;
/*-------------------------------------------------------------------------
* open the files first; if they are not valid, no point in continuing
*-------------------------------------------------------------------------
*/
/* disable error reporting */
H5E_BEGIN_TRY {
/* Open the files */
if ((fid1=H5Fopen(fname1,H5F_ACC_RDONLY,H5P_DEFAULT))<0 )
{
printf("h5repack: <%s>: %s\n", fname1, H5FOPENERROR );
return -1;
}
if ((fid2=H5Fopen(fname2,H5F_ACC_RDONLY,H5P_DEFAULT))<0 )
{
printf("h5repack: <%s>: %s\n", fname2, H5FOPENERROR );
H5Fclose(fid1);
return -1;
}
/* enable error reporting */
} H5E_END_TRY;
/*-------------------------------------------------------------------------
* get file table list of objects
*-------------------------------------------------------------------------
*/
trav_table_init(&travt1);
trav_table_init(&travt2);
if (h5trav_gettable(fid1,travt1)<0)
goto error;
if (h5trav_gettable(fid2,travt2)<0)
goto error;
/*-------------------------------------------------------------------------
* traverse the suppplied object list
*-------------------------------------------------------------------------
*/
for ( i=0; i < travt1->nobjs; i++)
{
switch ( travt1->objs[i].type )
{
/*-------------------------------------------------------------------------
* nothing to do for groups, links and types
*-------------------------------------------------------------------------
*/
default:
break;
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
case H5G_DATASET:
if ((dset1=H5Dopen(fid1,travt1->objs[i].name))<0)
goto error;
if ((dset2=H5Dopen(fid2,travt1->objs[i].name))<0)
goto error;
if ((dcpl1=H5Dget_create_plist(dset1))<0)
goto error;
if ((dcpl2=H5Dget_create_plist(dset2))<0)
goto error;
/*-------------------------------------------------------------------------
* compare the property lists
*-------------------------------------------------------------------------
*/
if ((ret=H5Pequal(dcpl1,dcpl2))<0)
goto error;
if (ret==0)
{
printf("Property lists for <%s> are different\n",travt1->objs[i].name);
goto error;
}
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
if (H5Pclose(dcpl1)<0)
goto error;
if (H5Pclose(dcpl2)<0)
goto error;
if (H5Dclose(dset1)<0)
goto error;
if (H5Dclose(dset2)<0)
goto error;
break;
} /*switch*/
} /*i*/
/*-------------------------------------------------------------------------
* free
*-------------------------------------------------------------------------
*/
trav_table_free(travt1);
trav_table_free(travt2);
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
*/
H5Fclose(fid1);
H5Fclose(fid2);
return ret;
/*-------------------------------------------------------------------------
* error
*-------------------------------------------------------------------------
*/
error:
H5E_BEGIN_TRY {
H5Pclose(dcpl1);
H5Pclose(dcpl2);
H5Dclose(dset1);
H5Dclose(dset2);
H5Fclose(fid1);
H5Fclose(fid2);
trav_table_free(travt1);
trav_table_free(travt2);
} H5E_END_TRY;
return -1;
}
|