summaryrefslogtreecommitdiffstats
path: root/tools/h5stat/h5stat.c
blob: 78fb4f521366ba1f7a5ce3e2011e6c0a0245dfac (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the files COPYING and Copyright.html.  COPYING can be found at the root   *
 * of the source code distribution tree; Copyright.html can be found at the  *
 * root level of an installed copy of the electronic HDF5 document set and   *
 * is linked from the top-level documents page.  It can also be found at     *
 * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
 * access to either file, you may request a copy from help@hdfgroup.org.     *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#include <stdlib.h>
#include <string.h>
#include "H5private.h"		/* Generic Functions			*/
#include "h5tools.h"
#include "h5tools_utils.h"
#include "h5tools_ref.h"
#include "h5trav.h"
#include "hdf5.h"

/* Parameters to control statistics gathered */
#define SIZE_SMALL_GROUPS       10
#define SIZE_SMALL_ATTRS	10
#define SIZE_SMALL_DSETS        10

#define  H5_NFILTERS_IMPL        8     /* Number of currently implemented filters + one to
                                          accommodate for user-define filters + one
                                          to accomodate datasets whithout any filters */



/* Datatype statistics for datasets */
typedef struct dtype_info_t {
    hid_t tid;                          /* ID of datatype */
    unsigned long count;                /* Number of types found */
    unsigned long named;                /* Number of types that are named */
} dtype_info_t;

typedef struct ohdr_info_t {
    hsize_t total_size;                 /* Total size of object headers */
    hsize_t free_size;                  /* Total free space in object headers */
} ohdr_info_t;

/* Info to pass to the iteration functions */
typedef struct iter_t {
    hid_t fid;                          /* File ID */

    unsigned long uniq_groups;          /* Number of unique groups */
    unsigned long uniq_dsets;           /* Number of unique datasets */
    unsigned long uniq_dtypes;          /* Number of unique named datatypes */
    unsigned long uniq_links;           /* Number of unique links */
    unsigned long uniq_others;          /* Number of other unique objects */

    unsigned long max_links;            /* Maximum # of links to an object */
    hsize_t max_fanout;                 /* Maximum fanout from a group */
    unsigned long num_small_groups[SIZE_SMALL_GROUPS];     /* Size of small groups tracked */
    unsigned group_nbins;               /* Number of bins for group counts */
    unsigned long *group_bins;          /* Pointer to array of bins for group counts */
    ohdr_info_t group_ohdr_info;        /* Object header information for groups */

    hsize_t  max_attrs;                 		/* Maximum attributes from a group */
    unsigned long num_small_attrs[SIZE_SMALL_ATTRS];    /* Size of small attributes tracked */
    unsigned attr_nbins;                /* Number of bins for attribute counts */
    unsigned long *attr_bins;           /* Pointer to array of bins for attribute counts */

    unsigned max_dset_rank;             /* Maximum rank of dataset */
    unsigned long dset_rank_count[H5S_MAX_RANK];   /* Number of datasets of each rank */
    hsize_t max_dset_dims;              /* Maximum dimension size of dataset */
    unsigned long small_dset_dims[SIZE_SMALL_DSETS];    /* Size of dimensions of small datasets tracked */
    unsigned long dset_layouts[H5D_NLAYOUTS];           /* Type of storage for each dataset */
    unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
    unsigned long dset_ntypes;          /* Number of diff. dataset datatypes found */
    dtype_info_t *dset_type_info;       /* Pointer to dataset datatype information found */
    unsigned dset_dim_nbins;            /* Number of bins for dataset dimensions */
    unsigned long *dset_dim_bins;       /* Pointer to array of bins for dataset dimensions */
    ohdr_info_t dset_ohdr_info;         /* Object header information for datasets */
    hsize_t dset_storage_size;          /* Size of raw data for datasets */
    ohdr_info_t dtype_ohdr_info;        /* Object header information for datatypes */
    hsize_t groups_btree_storage_size;  /* btree size for group */
    hsize_t groups_heap_storage_size;   /* heap size for group */
    hsize_t attrs_btree_storage_size;   /* btree size for attributes (1.8) */
    hsize_t attrs_heap_storage_size;    /* fractal heap size for attributes (1.8) */
    hsize_t SM_hdr_storage_size;        /* header size for SOHM table (1.8) */
    hsize_t SM_index_storage_size;      /* index (btree & list) size for SOHM table (1.8) */
    hsize_t SM_heap_storage_size;	/* fractal heap size for SOHM table (1.8) */
    hsize_t super_ext_size;	   	/* superblock extension size */
    hsize_t datasets_btree_storage_size;   /* btree size for chunked dataset */
    unsigned long nexternal;            /* Number of external files for a dataset */
    int           local;                /* Flag to indicate iteration over the object*/
} iter_t;


const char *progname = "h5stat";
int               d_status = EXIT_SUCCESS;
static int        display_all = TRUE;
static int        display_file_metadata = FALSE;
static int        display_file = FALSE;
static int        display_group = FALSE;
static int        display_dset = FALSE;
static int        display_dtype_metadata = FALSE;
static int        display_object = FALSE;
static int        display_attr = FALSE;

/* a structure for handling the order command-line parameters come in */
struct handler_t {
    char *obj;
};


static const char *s_opts ="ADdFfhGgTO:V";
static struct long_options l_opts[] = {
    {"help", no_arg, 'h'},
    {"hel", no_arg, 'h'},
    {"file", no_arg, 'f'},
    {"fil", no_arg, 'f'},
    {"fi", no_arg, 'f'},
    {"FILEmetadata", no_arg, 'F'},
    {"FILEmetadat", no_arg, 'F'},
    {"FILEmetada", no_arg, 'F'},
    {"FILEmetad", no_arg, 'F'},
    {"FILEmeta", no_arg, 'F'},
    {"FILEmet", no_arg, 'F'},
    {"FILEme", no_arg, 'F'},
    {"FILEm", no_arg, 'F'},
    {"group", no_arg, 'g'},
    {"grou", no_arg, 'g'},
    {"gro", no_arg, 'g'},
    {"gr", no_arg, 'g'},
    {"groupmetadata", no_arg, 'G'},
    {"groupmetadat", no_arg, 'G'},
    {"groupmetada", no_arg, 'G'},
    {"groupmetad", no_arg, 'G'},
    {"groupmeta", no_arg, 'G'},
    {"groupmet", no_arg, 'G'},
    {"groupme", no_arg, 'G'},
    {"groupm", no_arg, 'G'},
    {"dset", no_arg, 'd'},
    {"dse", no_arg, 'd'},
    {"ds", no_arg, 'd'},
    {"d", no_arg, 'd'},
    {"dsetmetadata", no_arg, 'D'},
    {"dsetmetadat", no_arg, 'D'},
    {"dsetmetada", no_arg, 'D'},
    {"dsetmetad", no_arg, 'D'},
    {"dsetmeta", no_arg, 'D'},
    {"dsetmet", no_arg, 'D'},
    {"dsetme", no_arg, 'D'},
    {"dsetm", no_arg, 'D'},
    {"dtypemetadata", no_arg, 'T'},
    {"dtypemetadat", no_arg, 'T'},
    {"dtypemetada", no_arg, 'T'},
    {"dtypemetad", no_arg, 'T'},
    {"dtypemeta", no_arg, 'T'},
    {"dtypemet", no_arg, 'T'},
    {"dtypeme", no_arg, 'T'},
    {"dtypem", no_arg, 'T'},
    {"dtype", no_arg, 'T'},
    { "object", require_arg, 'O' },
    { "objec", require_arg, 'O' },
    { "obje", require_arg, 'O' },
    { "obj", require_arg, 'O' },
    { "ob", require_arg, 'O' },
    { "version", no_arg, 'V' },
    { "versio", no_arg, 'V' },
    { "versi", no_arg, 'V' },
    { "vers", no_arg, 'V' },
    { "ver", no_arg, 'V' },
    { "ve", no_arg, 'V' },
    { "attribute", no_arg, 'A' },
    { "attribut", no_arg, 'A' },
    { "attribu", no_arg, 'A' },
    { "attrib", no_arg, 'A' },
    { "attri", no_arg, 'A' },
    { "attr", no_arg, 'A' },
    { "att", no_arg, 'A' },
    { "at", no_arg, 'A' },
    { "a", no_arg, 'A' },
    { NULL, 0, '\0' }
};

static void
leave(int ret)
{
   h5tools_close();
   exit(ret);
}


static void usage(const char *prog)
{
     fflush(stdout);
     fprintf(stdout, "Usage: %s [OPTIONS] file\n", prog);
     fprintf(stdout, "\n");
     fprintf(stdout, "      OPTIONS\n");
     fprintf(stdout, "     -h, --help            Print a usage message and exit\n");
     fprintf(stdout, "     -V, --version         Print version number and exit\n");
     fprintf(stdout, "     -f, --file            Print file information\n");
     fprintf(stdout, "     -F, --filemetadata    Print file metadata\n");
     fprintf(stdout, "     -g, --group           Print group information\n");
     fprintf(stdout, "     -G, --groupmetadata   Print group metadata\n");
     fprintf(stdout, "     -d, --dset            Print dataset information\n");
     fprintf(stdout, "     -D, --dsetmetadata    Print dataset metadata\n");
     fprintf(stdout, "     -T, --dtypemetadata   Print datatype metadata\n");
     fprintf(stdout, "     -A, --attribute       Print attribute information\n");
     fprintf(stdout, "\n");
}


/*-------------------------------------------------------------------------
 * Function: ceil_log10
 *
 * Purpose: Compute the ceiling of log_10(x)
 *
 * Return: >0 on success, 0 on failure
 *
 * Programmer: Quincey Koziol
 *              Monday, August 22, 2005
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static unsigned
ceil_log10(unsigned long x)
{
    unsigned long pow10 = 1;
    unsigned ret = 0;

    while(x >= pow10) {
        pow10 *= 10;
        ret++;
    } /* end while */

    return(ret);
}


/*-------------------------------------------------------------------------
 * Function: attribute_stats
 *
 * Purpose: Gather statistics about attributes on an object
 *
 * Return:  Success: 0
 *
 *          Failure: -1
 *
 * Programmer:    Quincey Koziol
 *                Tuesday, July 17, 2007
 *
 *-------------------------------------------------------------------------
 */
static herr_t
attribute_stats(iter_t *iter, const H5O_info_t *oi)
{
    unsigned 		bin;               /* "bin" the number of objects falls in */

    /* Update dataset & attribute metadata info */
    iter->attrs_btree_storage_size += oi->meta_size.attr.index_size;
    iter->attrs_heap_storage_size += oi->meta_size.attr.heap_size;

    /* Update small # of attribute count & limits */
    if(oi->num_attrs < SIZE_SMALL_ATTRS)
        (iter->num_small_attrs[(size_t)oi->num_attrs])++;
    if(oi->num_attrs > iter->max_attrs)
        iter->max_attrs = oi->num_attrs;

    /* Add attribute count to proper bin */
    bin = ceil_log10((unsigned long)oi->num_attrs);
    if((bin + 1) > iter->attr_nbins) {
	iter->attr_bins = (unsigned long *)realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long));
        assert(iter->attr_bins);

	/* Initialize counts for intermediate bins */
        while(iter->attr_nbins < bin)
	    iter->attr_bins[iter->attr_nbins++] = 0;
        iter->attr_nbins++;

        /* Initialize count for new bin */
        iter->attr_bins[bin] = 1;
     } /* end if */
     else
         (iter->attr_bins[bin])++;

     return 0;
} /* end attribute_stats() */


/*-------------------------------------------------------------------------
 * Function: group_stats
 *
 * Purpose: Gather statistics about the group
 *
 * Return: Success: 0
 *
 *  Failure: -1
 *
 * Programmer: Quincey Koziol
 *             Tuesday, August 16, 2005
 *
 * Modifications: Refactored code from the walk_function
 *                EIP, Wednesday, August 16, 2006
 *
 *		  Vailin Choi 12 July 2007
 *		  1. Gathered storage info for btree and heap
 *		     (groups and attributes)
 *		  2. Gathered info for attributes
 *
 *		  Vailin Choi 14 July 2007
 *		  Cast "num_objs" and "num_attrs" to size_t
 *		  Due to the -Mbounds problem for the pgi-32 bit compiler on indexing
 *
 *-------------------------------------------------------------------------
 */
static herr_t
group_stats(iter_t *iter, const char *name, const H5O_info_t *oi)
{
    H5G_info_t 		ginfo;                  /* Group information */
    unsigned 		bin;                   	/* "bin" the number of objects falls in */
    herr_t 		ret;

    /* Gather statistics about this type of object */
    iter->uniq_groups++;

    /* Get object header information */
    iter->group_ohdr_info.total_size += oi->hdr.space.total;
    iter->group_ohdr_info.free_size += oi->hdr.space.free;

    /* Get group information */
    ret = H5Gget_info_by_name(iter->fid, name, &ginfo, H5P_DEFAULT);
    assert(ret >= 0);

    /* Update link stats */
    if(ginfo.nlinks < SIZE_SMALL_GROUPS)
        (iter->num_small_groups[(size_t)ginfo.nlinks])++;
    if(ginfo.nlinks > iter->max_fanout)
        iter->max_fanout = ginfo.nlinks;

    /* Add group count to proper bin */
    bin = ceil_log10((unsigned long)ginfo.nlinks);
    if((bin + 1) > iter->group_nbins) {
        /* Allocate more storage for info about dataset's datatype */
        iter->group_bins = (unsigned long *)realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long));
        assert(iter->group_bins);

	/* Initialize counts for intermediate bins */
        while(iter->group_nbins < bin)
            iter->group_bins[iter->group_nbins++] = 0;
        iter->group_nbins++;

        /* Initialize count for new bin */
        iter->group_bins[bin] = 1;
    } /* end if */
    else
        (iter->group_bins[bin])++;

    /* Update group metadata info */
    iter->groups_btree_storage_size += oi->meta_size.obj.index_size;
    iter->groups_heap_storage_size += oi->meta_size.obj.heap_size;

    /* Update attribute metadata info */
    ret = attribute_stats(iter, oi);
    assert(ret >= 0);

    return 0;
} /* end group_stats() */


/*-------------------------------------------------------------------------
 * Function: dataset_stats
 *
 * Purpose: Gather statistics about the dataset
 *
 * Return:  Success: 0
 *
 *          Failure: -1
 *
 * Programmer:    Quincey Koziol
 *                Tuesday, August 16, 2005
 *
 * Modifications: Refactored code from the walk_function
 *                EIP, Wednesday, August 16, 2006
 *
 *                Vailin Choi 12 July 2007
 *                1. Gathered storage info for btree and heap
 *                   (chunked datasets and attributes)
 *                2. Gathered info for attributes
 *
 *		  Vailin Choi 14 July 2007
 *		  Cast "dims" and "num_attrs" to size_t
 *		  Due to the -Mbounds problem for the pgi-32bit compiler on indexing
 *
 *-------------------------------------------------------------------------
 */
static herr_t
dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi)
{
    unsigned 		bin;               /* "bin" the number of objects falls in */
    hid_t 		did;               /* Dataset ID */
    hid_t 		sid;               /* Dataspace ID */
    hid_t 		tid;               /* Datatype ID */
    hid_t 		dcpl;              /* Dataset creation property list ID */
    hsize_t 		dims[H5S_MAX_RANK];/* Dimensions of dataset */
    H5D_layout_t 	lout;              /* Layout of dataset */
    unsigned 		type_found;        /* Whether the dataset's datatype was */
                                    	   /* already found */
    int 		ndims;             /* Number of dimensions of dataset */
    hsize_t 		storage;           /* Size of dataset storage */
    unsigned 		u;                 /* Local index variable */
    int 		num_ext;           /* Number of external files for a dataset */
    int 		nfltr;             /* Number of filters for a dataset */
    H5Z_filter_t	fltr;              /* Filter identifier */
    herr_t 		ret;

    /* Gather statistics about this type of object */
    iter->uniq_dsets++;

    /* Get object header information */
    iter->dset_ohdr_info.total_size += oi->hdr.space.total;
    iter->dset_ohdr_info.free_size += oi->hdr.space.free;

    did = H5Dopen2(iter->fid, name, H5P_DEFAULT);
    assert(did > 0);

    /* Update dataset metadata info */
    iter->datasets_btree_storage_size += oi->meta_size.obj.index_size;

    /* Update attribute metadata info */
    ret = attribute_stats(iter, oi);
    assert(ret >= 0);

    /* Get storage info */
    storage = H5Dget_storage_size(did);
    iter->dset_storage_size += storage;

    /* Gather dataspace statistics */
    sid = H5Dget_space(did);
    assert(sid > 0);

    ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
    assert(ndims >= 0);

    /* Check for larger rank of dataset */
    if((unsigned)ndims > iter->max_dset_rank)
        iter->max_dset_rank = (unsigned)ndims;

    /* Track the number of datasets with each rank */
    (iter->dset_rank_count[ndims])++;

    /* Only gather dim size statistics on 1-D datasets */
    if(ndims == 1) {
       iter->max_dset_dims = dims[0];
       if(dims[0] < SIZE_SMALL_DSETS)
           (iter->small_dset_dims[(size_t)dims[0]])++;

       /* Add dim count to proper bin */
       bin = ceil_log10((unsigned long)dims[0]);
       if((bin + 1) > iter->dset_dim_nbins) {
          /* Allocate more storage for info about dataset's datatype */
          iter->dset_dim_bins = (unsigned long *)realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long));
          assert(iter->dset_dim_bins);

          /* Initialize counts for intermediate bins */
          while(iter->dset_dim_nbins < bin)
              iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
          iter->dset_dim_nbins++;

          /* Initialize count for this bin */
          iter->dset_dim_bins[bin] = 1;
        } /* end if */
        else
            (iter->dset_dim_bins[bin])++;
    } /* end if */

    ret = H5Sclose(sid);
    assert(ret >= 0);

    /* Gather datatype statistics */
    tid = H5Dget_type(did);
    assert(tid > 0);

    type_found = FALSE;
    for(u = 0; u < iter->dset_ntypes; u++)
        if(H5Tequal(iter->dset_type_info[u].tid, tid) > 0) {
            type_found = TRUE;
            break;
        } /* end for */
    if(type_found)
         (iter->dset_type_info[u].count)++;
    else {
        unsigned curr_ntype = iter->dset_ntypes;

        /* Increment # of datatypes seen for datasets */
        iter->dset_ntypes++;

        /* Allocate more storage for info about dataset's datatype */
        iter->dset_type_info = (dtype_info_t *)realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t));
        assert(iter->dset_type_info);

        /* Initialize information about datatype */
        iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid);
        assert(iter->dset_type_info[curr_ntype].tid > 0);
        iter->dset_type_info[curr_ntype].count = 1;
        iter->dset_type_info[curr_ntype].named = 0;

        /* Set index for later */
        u = curr_ntype;
    } /* end else */

    /* Check if the datatype is a named datatype */
    if(H5Tcommitted(tid) > 0)
        (iter->dset_type_info[u].named)++;

    ret = H5Tclose(tid);
    assert(ret >= 0);

    /* Gather layout statistics */
    dcpl = H5Dget_create_plist(did);
    assert(dcpl > 0);

    lout = H5Pget_layout(dcpl);
    assert(lout >= 0);

    /* Track the layout type for dataset */
    (iter->dset_layouts[lout])++;

    num_ext = H5Pget_external_count(dcpl);
    assert (num_ext >= 0);

    if(num_ext)
        iter->nexternal += (unsigned long)num_ext;

    /* Track different filters */
    if((nfltr = H5Pget_nfilters(dcpl)) >= 0) {
       if(nfltr == 0)
           iter->dset_comptype[0]++;
        for(u = 0; u < (unsigned)nfltr; u++) {
            fltr = H5Pget_filter2(dcpl, u, 0, 0, 0, 0, 0, NULL);
            if(fltr < (H5_NFILTERS_IMPL - 1))
                iter->dset_comptype[fltr]++;
            else
                iter->dset_comptype[H5_NFILTERS_IMPL - 1]++; /*other filters*/
        } /* end for */
    } /* endif nfltr */

     ret = H5Pclose(dcpl);
     assert(ret >= 0);

     ret = H5Dclose(did);
     assert(ret >= 0);

     return 0;
}  /* end dataset_stats() */

/*-------------------------------------------------------------------------
 * Function: datatype_stats
 *
 * Purpose: Gather statistics about the datatype
 *
 * Return:  Success: 0
 *          Failure: -1
 *
 * Programmer:    Vailin Choi; July 7th, 2009
 *
 *-------------------------------------------------------------------------
 */
static herr_t
datatype_stats(iter_t *iter, const H5O_info_t *oi)
{
    /* Gather statistics about this type of object */
    iter->uniq_dtypes++;

    /* Get object header information */
    iter->dtype_ohdr_info.total_size += oi->hdr.space.total;
    iter->dtype_ohdr_info.free_size += oi->hdr.space.free;

     return 0;
}  /* end datatype_stats() */


/*-------------------------------------------------------------------------
 * Function: obj_stats
 *
 * Purpose: Gather statistics about an object
 *
 * Return: Success: 0
 *
 *  Failure: -1
 *
 * Programmer: Quincey Koziol
 *             Tuesday, November 6, 2007
 *
 *-------------------------------------------------------------------------
 */
static herr_t
obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited,
    void *_iter)
{
    iter_t *iter = (iter_t *)_iter;

    /* If the object has already been seen then just return */
    if(NULL == already_visited) {
        /* Gather some general statistics about the object */
        if(oi->rc > iter->max_links)
            iter->max_links = oi->rc;

        switch(oi->type) {
            case H5O_TYPE_GROUP:
                group_stats(iter, path, oi);
                break;

            case H5O_TYPE_DATASET:
                dataset_stats(iter, path, oi);
                break;

            case H5O_TYPE_NAMED_DATATYPE:
		datatype_stats(iter, oi);
                break;

            default:
                /* Gather statistics about this type of object */
                iter->uniq_others++;
                break;
        } /* end switch */
    } /* end if */

    return 0;
} /* end obj_stats() */


/*-------------------------------------------------------------------------
 * Function: lnk_stats
 *
 * Purpose: Gather statistics about a link
 *
 * Return: Success: 0
 *
 *  Failure: -1
 *
 * Programmer: Quincey Koziol
 *             Tuesday, November 6, 2007
 *
 *-------------------------------------------------------------------------
 */
static herr_t
lnk_stats(const char UNUSED *path, const H5L_info_t *li, void *_iter)
{
    iter_t *iter = (iter_t *)_iter;

    switch(li->type) {
        case H5L_TYPE_SOFT:
        case H5L_TYPE_EXTERNAL:
            /* Gather statistics about links and UD links */
            iter->uniq_links++;
            break;

        default:
            /* Gather statistics about this type of object */
            iter->uniq_others++;
            break;
    } /* end switch() */

    return 0;
} /* end lnk_stats() */


/*-------------------------------------------------------------------------
 * Function: parse_command_line
 *
 * Purpose: Parses command line and sets up global variable to control output
 *
 * Return: Success: 0
 *
 * Failure: -1
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 *-------------------------------------------------------------------------
 */
static struct handler_t *
parse_command_line(int argc, const char *argv[])
{
    int                opt, i;
    struct handler_t   *hand;

    /* Allocate space to hold the command line info */
    hand = (struct handler_t *)calloc((size_t)argc, sizeof(struct handler_t));

    /* parse command line options */
    while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
        switch ((char)opt) {
            case 'A':
                display_all = FALSE;
                display_attr = TRUE;
                break;

            case 'F':
                display_all = FALSE;
                display_file_metadata = TRUE;
                break;

            case 'f':
                display_all = FALSE;
                display_file = TRUE;
                break;

            case 'G':
                display_all = FALSE;
                break;

            case 'g':
                display_all = FALSE;
                display_group = TRUE;
                break;

            case 'T':
                display_all = FALSE;
                display_dtype_metadata = TRUE;
                break;

            case 'D':
                display_all = FALSE;
                break;

            case 'd':
                display_all = FALSE;
                display_dset = TRUE;
                break;

            case 'h':
                usage(progname);
                leave(EXIT_SUCCESS);

            case 'V':
                print_version(progname);
                leave(EXIT_SUCCESS);
                break;

            case 'O':
                display_object = TRUE;
                for(i = 0; i < argc; i++)
                    if(!hand[i].obj) {
                        hand[i].obj = HDstrdup(opt_arg);
                        break;
                    } /* end if */
                break;

            default:
                usage(progname);
                leave(EXIT_FAILURE);
        } /* end switch */
    } /* end while */

    /* check for file name to be processed */
    if (argc <= opt_ind) {
        error_msg(progname, "missing file name\n");
        usage(progname);
        leave(EXIT_FAILURE);
    } /* end if */

    return hand;
}


/*-------------------------------------------------------------------------
 * Function: init_iter
 *
 * Purpose: Initialize iter structure
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 *-------------------------------------------------------------------------
 */
static herr_t
iter_init(iter_t *iter, hid_t fid)
{
    /* Clear everything to zeros */
    HDmemset(iter, 0, sizeof(*iter));

    /* Set the file ID for later use in callbacks */
    iter->fid = fid;

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_file_info
 *
 * Purpose: Prints information about file
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static herr_t
print_file_info(const iter_t *iter)
{
    printf("File information\n");
    printf("\t# of unique groups: %lu\n", iter->uniq_groups);
    printf("\t# of unique datasets: %lu\n", iter->uniq_dsets);
    printf("\t# of unique named dataypes: %lu\n", iter->uniq_dtypes);
    printf("\t# of unique links: %lu\n", iter->uniq_links);
    printf("\t# of unique other: %lu\n", iter->uniq_others);
    printf("\tMax. # of links to object: %lu\n", iter->max_links);
    HDfprintf(stdout, "\tMax. # of objects in group: %Hu\n", iter->max_fanout);

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_file_metadata
 *
 * Purpose: Prints metadata information about file
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 *-------------------------------------------------------------------------
 */
static herr_t
print_file_metadata(const iter_t *iter)
{
    printf("Object header size: (total/unused)\n");
    HDfprintf(stdout, "\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size,
                                             iter->group_ohdr_info.free_size);
    HDfprintf(stdout, "\tDatasets: %Hu/%Hu\n", iter->dset_ohdr_info.total_size,
                                               iter->dset_ohdr_info.free_size);
    HDfprintf(stdout, "\tDatatypes: %Hu/%Hu\n", iter->dtype_ohdr_info.total_size,
                                               iter->dtype_ohdr_info.free_size);

    printf("Storage information:\n");
    HDfprintf(stdout, "\tGroups:\n");
    HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size);
    HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->groups_heap_storage_size);

    HDfprintf(stdout, "\tAttributes:\n");
    HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->attrs_btree_storage_size);
    HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->attrs_heap_storage_size);

    HDfprintf(stdout, "\tChunked datasets:\n");
    HDfprintf(stdout, "\t\tB-tree: %Hu\n", iter->datasets_btree_storage_size);

    HDfprintf(stdout, "\tShared Messages:\n");
    HDfprintf(stdout, "\t\tHeader: %Hu\n", iter->SM_hdr_storage_size);
    HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->SM_index_storage_size);
    HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->SM_heap_storage_size);

    HDfprintf(stdout, "\tSuperblock extension: %Hu\n", iter->super_ext_size);

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_group_info
 *
 * Purpose: Prints information about groups in the file
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 * Modifications:
 *	bug #1253; Oct 6th 2008; Vailin Choi
 *	Fixed segmentation fault: print iter->group_bins[0] when
 *	there is iter->group_nbins
 *
 *-------------------------------------------------------------------------
 */
static herr_t
print_group_info(const iter_t *iter)
{
    unsigned long power;        /* Temporary "power" for bins */
    unsigned long total;        /* Total count for various statistics */
    unsigned u;                 /* Local index variable */

    printf("Small groups:\n");
    total = 0;
    for(u = 0; u < SIZE_SMALL_GROUPS; u++) {
        if(iter->num_small_groups[u] > 0) {
            printf("\t# of groups of size %u: %lu\n", u, iter->num_small_groups[u]);
            total += iter->num_small_groups[u];
        } /* end if */
    } /* end for */
    printf("\tTotal # of small groups: %lu\n", total);

    printf("Group bins:\n");
    total = 0;
    if((iter->group_nbins > 0) && (iter->group_bins[0] > 0)) {
       printf("\t# of groups of size 0: %lu\n", iter->group_bins[0]);
       total = iter->group_bins[0];
    } /* end if */
    power = 1;
    for(u = 1; u < iter->group_nbins; u++) {
        if(iter->group_bins[u] > 0) {
           printf("\t# of groups of size %lu - %lu: %lu\n", power, (power * 10) - 1,
                    iter->group_bins[u]);
           total += iter->group_bins[u];
        } /* end if */
        power *= 10;
    } /* end for */
    printf("\tTotal # of groups: %lu\n", total);

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_attr_info
 *
 * Purpose: Prints information about attributes in the file
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Vailin Choi
 *             July 12, 2007
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static herr_t
print_attr_info(const iter_t *iter)
{
    unsigned long power;        /* Temporary "power" for bins */
    unsigned long total;        /* Total count for various statistics */
    unsigned u;                 /* Local index variable */

    printf("Small # of attributes:\n");
    total = 0;
    for(u = 1; u < SIZE_SMALL_ATTRS; u++) {
        if(iter->num_small_attrs[u] > 0) {
            printf("\t# of objects with %u attributes: %lu\n", u, iter->num_small_attrs[u]);
            total += iter->num_small_attrs[u];
        } /* end if */
    } /* end for */
    printf("\tTotal # of objects with small # of attributes: %lu\n", total);

    printf("Attribute bins:\n");
    total = 0;
    power = 1;
    for(u = 1; u < iter->attr_nbins; u++) {
        if(iter->attr_bins[u] > 0) {
           printf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1,
                    iter->attr_bins[u]);
           total += iter->attr_bins[u];
        } /* end if */
        power *= 10;
    } /* end for */
    printf("\tTotal # of objects with attributes: %lu\n", total);
    printf("\tMax. # of attributes to objects: %lu\n", (unsigned long)iter->max_attrs);

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_dataset_info
 *
 * Purpose: Prints information about datasets in the file
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static herr_t
print_dataset_info(const iter_t *iter)
{
    unsigned long power;        /* Temporary "power" for bins */
    unsigned long total;        /* Total count for various statistics */
    size_t   dtype_size;        /* Size of encoded datatype */
    unsigned u;                 /* Local index variable */

    if(iter->uniq_dsets > 0) {
        printf("Dataset dimension information:\n");
        printf("\tMax. rank of datasets: %u\n", iter->max_dset_rank);
        printf("\tDataset ranks:\n");
        for(u = 0; u < H5S_MAX_RANK; u++)
            if(iter->dset_rank_count[u] > 0)
                printf("\t\t# of dataset with rank %u: %lu\n", u, iter->dset_rank_count[u]);

        printf("1-D Dataset information:\n");
        HDfprintf(stdout, "\tMax. dimension size of 1-D datasets: %Hu\n", iter->max_dset_dims);
        printf("\tSmall 1-D datasets:\n");
        total = 0;
        for(u = 0; u < SIZE_SMALL_DSETS; u++) {
            if(iter->small_dset_dims[u] > 0) {
                printf("\t\t# of dataset dimensions of size %u: %lu\n", u,
                         iter->small_dset_dims[u]);
                total += iter->small_dset_dims[u];
            } /* end if */
        } /* end for */
        printf("\t\tTotal small datasets: %lu\n", total);

        /* Protect against no datasets in file */
        if(iter->dset_dim_nbins > 0) {
            printf("\t1-D Dataset dimension bins:\n");
            total = 0;
            if(iter->dset_dim_bins[0] > 0) {
                printf("\t\t# of datasets of size 0: %lu\n", iter->dset_dim_bins[0]);
                total = iter->dset_dim_bins[0];
            } /* end if */
            power = 1;
            for(u = 1; u < iter->dset_dim_nbins; u++) {
                if(iter->dset_dim_bins[u] > 0) {
                    printf("\t\t# of datasets of size %lu - %lu: %lu\n", power, (power * 10) - 1,
                             iter->dset_dim_bins[u]);
                    total += iter->dset_dim_bins[u];
                } /* end if */
                power *= 10;
            } /* end for */
            printf("\t\tTotal # of datasets: %lu\n", total);
        } /* end if */

        printf("Dataset storage information:\n");
        HDfprintf(stdout, "\tTotal raw data size: %Hu\n", iter->dset_storage_size);

        printf("Dataset layout information:\n");
        for(u = 0; u < H5D_NLAYOUTS; u++)
        printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
                (u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]);
        printf("\tNumber of external files : %lu\n", iter->nexternal);

        printf("Dataset filters information:\n");
        printf("\tNumber of datasets with:\n");
        printf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR+1]);
        printf("\t\tGZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_DEFLATE]);
        printf("\t\tSHUFFLE filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SHUFFLE]);
        printf("\t\tFLETCHER32 filter: %lu\n", iter->dset_comptype[H5Z_FILTER_FLETCHER32]);
        printf("\t\tSZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SZIP]);
        printf("\t\tNBIT filter: %lu\n", iter->dset_comptype[H5Z_FILTER_NBIT]);
        printf("\t\tSCALEOFFSET filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SCALEOFFSET]);
        printf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL-1]);

        if(display_dtype_metadata) {
            printf("Dataset datatype information:\n");
            printf("\t# of unique datatypes used by datasets: %lu\n", iter->dset_ntypes);
            total = 0;
            for(u = 0; u < iter->dset_ntypes; u++) {
                H5Tencode(iter->dset_type_info[u].tid, NULL, &dtype_size);
                printf("\tDataset datatype #%u:\n", u);
                printf("\t\tCount (total/named) = (%lu/%lu)\n", iter->dset_type_info[u].count, iter->dset_type_info[u].named);
                printf("\t\tSize (desc./elmt) = (%lu/%lu)\n", (unsigned long)dtype_size,
                        (unsigned long)H5Tget_size(iter->dset_type_info[u].tid));
                H5Tclose(iter->dset_type_info[u].tid);
                total += iter->dset_type_info[u].count;
            } /* end for */
            printf("\tTotal dataset datatype count: %lu\n", total);
        }
    } /* end if */

    return 0;
}


/*-------------------------------------------------------------------------
 * Function: print_file_statistics
 *
 * Purpose: Prints file statistics
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Saturday, August 12, 2006
 *
 *-------------------------------------------------------------------------
 */
static void
print_file_statistics(const iter_t *iter)
{
    if(display_all) {
        display_file = TRUE;
        display_file_metadata = TRUE;
        display_group = TRUE;
        display_dset = TRUE;
        display_dtype_metadata = TRUE;
        display_attr = TRUE;
    }

    if(display_file)          print_file_info(iter);
    if(display_file_metadata) print_file_metadata(iter);
    if(display_group)         print_group_info(iter);
    if(display_dset)          print_dataset_info(iter);
    if(display_attr)          print_attr_info(iter);
}


/*-------------------------------------------------------------------------
 * Function: print_object_statistics
 *
 * Purpose: Prints object statistics
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Thursday, August 17, 2006
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static void
print_object_statistics(const char *name)
{
    printf("Object name %s\n", name);
}


/*-------------------------------------------------------------------------
 * Function: print_statistics
 *
 * Purpose: Prints statistics
 *
 * Return: Success: 0
 *
 * Failure: Never fails
 *
 * Programmer: Elena Pourmal
 *             Thursday, August 17, 2006
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static void
print_statistics(const char *name, const iter_t *iter)
{
    if(display_object)
        print_object_statistics(name);
    else
        print_file_statistics(iter);
}


int
main(int argc, const char *argv[])
{
    iter_t          	iter;
    const char     	*fname = NULL;
    hid_t           	fid;
    struct handler_t   *hand;
    H5F_info_t      	finfo;

    /* Disable error reporting */
    H5Eset_auto2(H5E_DEFAULT, NULL, NULL);

    /* Initialize h5tools lib */
    h5tools_init();
    hand = parse_command_line (argc, argv);
    if(!hand) {
        error_msg(progname, "unable to parse command line arguments \n");
        leave(EXIT_FAILURE);
    } /* end if */

    fname = argv[opt_ind];

    printf("Filename: %s\n", fname);

    fid = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT);
    if(fid < 0) {
        error_msg(progname, "unable to open file \"%s\"\n", fname);
        leave(EXIT_FAILURE);
    } /* end if */

    /* Initialize iter structure */
    iter_init(&iter, fid);

    /* Get storge info for SOHM's btree/list/heap and superblock extension */
    if(H5Fget_info(fid, &finfo) < 0)
	warn_msg(progname, "Unable to retrieve SOHM info\n");
    else {
	iter.super_ext_size = finfo.super_ext_size;
	iter.SM_hdr_storage_size = finfo.sohm.hdr_size;
	iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size;
	iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size;
    } /* end else */

    /* Walk the objects or all file */
    if(display_object) {
        unsigned u;

        u = 0;
        while(hand[u].obj) {
            if (h5trav_visit(fid, hand[u].obj, TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0) 
		warn_msg(progname, "Unable to traverse object \"%s\"\n", hand[u].obj);
	    else
		print_statistics(hand[u].obj, &iter);
            u++;
        } /* end while */
    } /* end if */
    else {
        if (h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0)
	    warn_msg(progname, "Unable to traverse objects/links in file \"%s\"\n", fname);
	else
	    print_statistics("/", &iter);
    } /* end else */

    if (hand) free(hand);

    if(H5Fclose(fid) < 0) {
        error_msg(progname, "unable to close file \"%s\"\n", fname);
        leave(EXIT_FAILURE);
    }

    leave(EXIT_SUCCESS);
}