1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
|
/*
* Small program to illustrate the "misalignment" of members within a compound
* datatype, in a datatype fixed by h5tools_fixtype().
*/
#include <string.h>
#include <stdlib.h>
#include <unistd.h> /* Required for unlink() */
#include "hdf5.h"
#include "h5tools.h"
const char *fname = "talign.h5";
const char *setname = "align";
/*
* This program assumes that there is no extra space between the members 'Ok'
* and 'Not Ok', (there shouldn't be because they are of the same atomic type
* H5T_NATIVE_FLOAT, and they are placed within the compound next to one
* another per construction)
*/
int main(void)
{
hid_t fil,spc,set;
hid_t cs6, cmp, fix;
hid_t cmp1, cmp2, cmp3;
hid_t plist;
hid_t array_dt;
hsize_t dim[2];
hsize_t cdim[4];
char string5[5];
float fok[2] = {1234., 2341.};
float fnok[2] = {5678., 6785.};
float *fptr;
char *data;
char *mname;
int result = 0;
printf("%-70s", "Testing alignment in compound datatypes");
strcpy(string5, "Hi!");
unlink(fname);
fil = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (fil < 0) {
puts("*FAILED*");
return 1;
}
H5E_BEGIN_TRY {
H5Gunlink(fil, setname);
} H5E_END_TRY;
cs6 = H5Tcopy(H5T_C_S1);
H5Tset_size(cs6, sizeof(string5));
H5Tset_strpad(cs6, H5T_STR_NULLPAD);
cmp = H5Tcreate(H5T_COMPOUND, sizeof(fok) + sizeof(string5) + sizeof(fnok));
H5Tinsert(cmp, "Awkward length", 0, cs6);
cdim[0] = sizeof(fok) / sizeof(float);
array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL);
H5Tinsert(cmp, "Ok", sizeof(string5), array_dt);
H5Tclose(array_dt);
cdim[0] = sizeof(fnok) / sizeof(float);
array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL);
H5Tinsert(cmp, "Not Ok", sizeof(fok) + sizeof(string5), array_dt);
H5Tclose(array_dt);
fix = h5tools_fixtype(cmp);
cmp1 = H5Tcreate(H5T_COMPOUND, sizeof(fok));
cdim[0] = sizeof(fok) / sizeof(float);
array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL);
H5Tinsert(cmp1, "Ok", 0, array_dt);
H5Tclose(array_dt);
cmp2 = H5Tcreate(H5T_COMPOUND, sizeof(string5));
H5Tinsert(cmp2, "Awkward length", 0, cs6);
cmp3 = H5Tcreate(H5T_COMPOUND, sizeof(fnok));
cdim[0] = sizeof(fnok) / sizeof(float);
array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL);
H5Tinsert(cmp3, "Not Ok", 0, array_dt);
H5Tclose(array_dt);
plist = H5Pcreate_list(H5P_DATASET_XFER_NEW);
H5Pset_preserve(plist, 1);
/*
* Create a small dataset, and write data into it we write each field
* in turn so that we are avoid alignment issues at this point
*/
dim[0] = 1;
spc = H5Screate_simple(1, dim, NULL);
set = H5Dcreate(fil, setname, cmp, spc, H5P_DEFAULT);
H5Dwrite(set, cmp1, spc, H5S_ALL, plist, fok);
H5Dwrite(set, cmp2, spc, H5S_ALL, plist, string5);
H5Dwrite(set, cmp3, spc, H5S_ALL, plist, fnok);
H5Dclose(set);
/* Now open the set, and read it back in */
data = malloc(H5Tget_size(fix));
if (!data) {
perror("malloc() failed");
abort();
}
set = H5Dopen(fil, setname);
H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data);
fptr = (float *)(data + H5Tget_member_offset(fix, 1));
if (fok[0] != fptr[0] || fok[1] != fptr[1]
|| fnok[0] != fptr[2] || fnok[1] != fptr[3]) {
result = 1;
printf("%14s (%2d) %6s = %s\n",
mname = H5Tget_member_name(fix, 0), (int)H5Tget_member_offset(fix,0),
string5, (char *)(data + H5Tget_member_offset(fix, 0)));
free(mname);
fptr = (float *)(data + H5Tget_member_offset(fix, 1));
printf("Data comparison:\n"
"%14s (%2d) %6f = %f\n"
" %6f = %f\n",
mname = H5Tget_member_name(fix, 1), (int)H5Tget_member_offset(fix,1),
fok[0], fptr[0],
fok[1], fptr[1]);
free(mname);
fptr = (float *)(data + H5Tget_member_offset(fix, 2));
printf("%14s (%2d) %6f = %f\n"
" %6f = %6f\n",
mname = H5Tget_member_name(fix, 2), (int)H5Tget_member_offset(fix,2),
fnok[0], fptr[0],
fnok[1], fptr[1]);
free(mname);
fptr = (float *)(data + H5Tget_member_offset(fix, 1));
printf("\n"
"Short circuit\n"
" %6f = %f\n"
" %6f = %f\n"
" %6f = %f\n"
" %6f = %f\n",
fok[0], fptr[0],
fok[1], fptr[1],
fnok[0], fptr[2],
fnok[1], fptr[3]);
puts("*FAILED*");
} else {
puts(" PASSED");
}
free(data);
H5Sclose(spc);
H5Tclose(cmp);
H5Tclose(cmp1);
H5Tclose(cmp2);
H5Tclose(cmp3);
H5Pclose_list(plist);
H5Fclose(fil);
unlink(fname);
fflush(stdout);
return result;
}
|
