1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: debug.c
* Jul 18 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Debugs an existing HDF5 file at a low level.
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
#define H5B2_PACKAGE /*suppress error about including H5B2pkg */
#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/
#define H5HF_PACKAGE /*suppress error about including H5HFpkg */
#include "H5private.h" /* Generic Functions */
#include "H5Bprivate.h" /* B-trees */
#include "H5B2pkg.h" /* v2 B-trees */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5Gprivate.h" /* Groups */
#include "H5HFpkg.h" /* Fractal heaps */
#include "H5HGprivate.h" /* Global Heaps */
#include "H5HLprivate.h" /* Local Heaps */
#include "H5Iprivate.h" /* IDs */
#include "H5Opkg.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
/* File drivers */
#include "H5FDfamily.h"
#define INDENT 3
#define VCOL 50
#define SIGLEN H5F_SIGNATURE_LEN /* Size of signature buffer */
/*-------------------------------------------------------------------------
* Function: main
*
* Usage: debug FILENAME [OFFSET]
*
* Return: Success: exit (0)
*
* Failure: exit (non-zero)
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 18 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
hid_t fid, fapl, dxpl;
H5F_t *f;
haddr_t addr=0, extra=0, extra2=0;
uint8_t sig[SIGLEN];
int i;
herr_t status = SUCCEED;
if (argc == 1) {
fprintf(stderr,
"Usage: %s filename [signature-addr [extra]]\n", argv[0]);
HDexit(1);
}
/* Initialize the library */
if(H5open ()<0) {
fprintf(stderr, "cannot initialize the library\n");
HDexit(1);
}
/*
* Open the file and get the file descriptor.
*/
if((dxpl = H5Pcreate (H5P_DATASET_XFER))<0) {
fprintf(stderr, "cannot create dataset transfer property list\n");
HDexit(1);
}
if((fapl = H5Pcreate (H5P_FILE_ACCESS))<0) {
fprintf(stderr, "cannot create file access property list\n");
HDexit(1);
}
if (strchr (argv[1], '%')) {
H5Pset_fapl_family (fapl, (hsize_t)0, H5P_DEFAULT);
}
if ((fid = H5Fopen(argv[1], H5F_ACC_RDONLY, fapl)) < 0) {
fprintf(stderr, "cannot open file\n");
HDexit(1);
}
if (NULL == (f = H5I_object(fid))) {
fprintf(stderr, "cannot obtain H5F_t pointer\n");
HDexit(2);
}
/*
* Parse command arguments.
*/
if (argc > 2)
addr = HDstrtoll(argv[2], NULL, 0);
if (argc > 3)
extra = HDstrtoll(argv[3], NULL, 0);
if (argc > 4)
extra2 = HDstrtoll(argv[4], NULL, 0);
/*
* Read the signature at the specified file position.
*/
HDfprintf(stdout, "Reading signature at address %a (rel)\n", addr);
if (H5F_block_read(f, H5FD_MEM_SUPER, addr, sizeof(sig), dxpl, sig)<0) {
fprintf(stderr, "cannot read signature\n");
HDexit(3);
}
if (!HDmemcmp(sig, H5F_SIGNATURE, H5F_SIGNATURE_LEN)) {
/*
* Debug the file's super block.
*/
status = H5F_debug(f, H5P_DATASET_XFER_DEFAULT, stdout, 0, VCOL);
} else if (!HDmemcmp(sig, H5HL_MAGIC, H5HL_SIZEOF_MAGIC)) {
/*
* Debug a local heap.
*/
status = H5HL_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if (!HDmemcmp (sig, H5HG_MAGIC, H5HG_SIZEOF_MAGIC)) {
/*
* Debug a global heap collection.
*/
status = H5HG_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if (!HDmemcmp(sig, H5G_NODE_MAGIC, H5G_NODE_SIZEOF_MAGIC)) {
/*
* Debug a symbol table node.
*/
status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra);
} else if (!HDmemcmp(sig, H5B_MAGIC, H5B_SIZEOF_MAGIC)) {
/*
* Debug a B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is the byte immediately
* after the B-tree signature.
*/
H5B_subid_t subtype = (H5B_subid_t)sig[H5B_SIZEOF_MAGIC];
unsigned ndims;
switch (subtype) {
case H5B_SNODE_ID:
status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra);
break;
case H5B_ISTORE_ID:
ndims = (unsigned)extra;
status = H5D_istore_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, ndims);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
}
} else if (!HDmemcmp(sig, H5B2_HDR_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is two bytes after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC+1];
switch (subtype) {
case H5B2_TEST_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if (!HDmemcmp(sig, H5B2_INT_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is two bytes after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC+1];
switch (subtype) {
case H5B2_TEST_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST, extra, (unsigned)extra2);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if (!HDmemcmp(sig, H5B2_LEAF_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is two bytes after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC+1];
switch (subtype) {
case H5B2_TEST_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST, extra, (unsigned)extra2);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if (!HDmemcmp(sig, H5HF_HDR_MAGIC, H5HF_SIZEOF_MAGIC)) {
/*
* Debug a fractal heap header.
*/
status = H5HF_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if (sig[0] == H5O_VERSION) {
/*
* This could be an object header. Since they don't have a signature
* it's a somewhat "ify" detection.
*/
status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else {
/*
* Got some other unrecognized signature.
*/
printf("%-*s ", VCOL, "Signature:");
for (i = 0; i < sizeof(sig); i++) {
if (sig[i] > ' ' && sig[i] <= '~' && '\\' != sig[i]) {
HDputchar(sig[i]);
} else if ('\\' == sig[i]) {
HDputchar('\\');
HDputchar('\\');
} else {
printf("\\%03o", sig[i]);
}
}
HDputchar('\n');
fprintf(stderr, "unknown signature\n");
HDexit(4);
}
if (status < 0) {
fprintf(stderr, "An error occurred!\n");
H5Eprint(stderr);
HDexit(5);
}
H5Pclose(dxpl);
H5Pclose(fapl);
H5Fclose(fid);
return 0;
}
|