1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: debug.c
* Jul 18 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Debugs an existing HDF5 file at a low level.
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
#define H5B2_PACKAGE /*suppress error about including H5B2pkg */
#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5FS_PACKAGE /*suppress error about including H5FSpkg */
#define H5HF_PACKAGE /*suppress error about including H5HFpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
#include "H5private.h" /* Generic Functions */
#include "H5Bprivate.h" /* B-trees */
#include "H5B2pkg.h" /* v2 B-trees */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5FSpkg.h" /* File free space */
#include "H5Gprivate.h" /* Groups */
#include "H5HFpkg.h" /* Fractal heaps */
#include "H5HGprivate.h" /* Global Heaps */
#include "H5HLprivate.h" /* Local Heaps */
#include "H5Iprivate.h" /* IDs */
#include "H5Opkg.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
/* File drivers */
#include "H5FDfamily.h"
#define INDENT 3
#define VCOL 50
#define SIGLEN H5F_SIGNATURE_LEN /* Size of signature buffer */
/*-------------------------------------------------------------------------
* Function: main
*
* Usage: debug FILENAME [OFFSET]
*
* Return: Success: exit (0)
*
* Failure: exit (non-zero)
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 18 1997
*
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
hid_t fid, fapl, dxpl;
H5F_t *f;
haddr_t addr = 0, extra = 0, extra2 = 0, extra3 = 0;
uint8_t sig[SIGLEN];
size_t u;
herr_t status = SUCCEED;
if(argc == 1) {
fprintf(stderr, "Usage: %s filename [signature-addr [extra]]\n", argv[0]);
HDexit(1);
} /* end if */
/* Initialize the library */
if(H5open() < 0) {
fprintf(stderr, "cannot initialize the library\n");
HDexit(1);
} /* end if */
/*
* Open the file and get the file descriptor.
*/
if((dxpl = H5Pcreate (H5P_DATASET_XFER))<0) {
fprintf(stderr, "cannot create dataset transfer property list\n");
HDexit(1);
} /* end if */
if((fapl = H5Pcreate (H5P_FILE_ACCESS))<0) {
fprintf(stderr, "cannot create file access property list\n");
HDexit(1);
} /* end if */
if(strchr (argv[1], '%'))
H5Pset_fapl_family (fapl, (hsize_t)0, H5P_DEFAULT);
if((fid = H5Fopen(argv[1], H5F_ACC_RDONLY, fapl)) < 0) {
fprintf(stderr, "cannot open file\n");
HDexit(1);
} /* end if */
if(NULL == (f = H5I_object(fid))) {
fprintf(stderr, "cannot obtain H5F_t pointer\n");
HDexit(2);
} /* end if */
/*
* Parse command arguments.
*/
if(argc > 2)
addr = HDstrtoll(argv[2], NULL, 0);
if(argc > 3)
extra = HDstrtoll(argv[3], NULL, 0);
if(argc > 4)
extra2 = HDstrtoll(argv[4], NULL, 0);
if(argc > 5)
extra3 = HDstrtoll(argv[5], NULL, 0);
/*
* Read the signature at the specified file position.
*/
HDfprintf(stdout, "Reading signature at address %a (rel)\n", addr);
if(H5F_block_read(f, H5FD_MEM_SUPER, addr, sizeof(sig), dxpl, sig) < 0) {
fprintf(stderr, "cannot read signature\n");
HDexit(3);
}
if(!HDmemcmp(sig, H5F_SIGNATURE, H5F_SIGNATURE_LEN)) {
/*
* Debug the file's super block.
*/
status = H5F_debug(f, H5P_DATASET_XFER_DEFAULT, stdout, 0, VCOL);
} else if(!HDmemcmp(sig, H5HL_MAGIC, H5HL_SIZEOF_MAGIC)) {
/*
* Debug a local heap.
*/
status = H5HL_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if(!HDmemcmp (sig, H5HG_MAGIC, H5HG_SIZEOF_MAGIC)) {
/*
* Debug a global heap collection.
*/
status = H5HG_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if(!HDmemcmp(sig, H5G_NODE_MAGIC, H5G_NODE_SIZEOF_MAGIC)) {
/*
* Debug a symbol table node.
*/
/* Check for extra parameters */
if(extra == 0) {
fprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n");
fprintf(stderr, "Symbol table node usage:\n");
fprintf(stderr, "\th5debug <filename> <Symbol table node address> <address of local heap>\n\n");
} /* end if */
status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra);
} else if(!HDmemcmp(sig, H5B_MAGIC, H5B_SIZEOF_MAGIC)) {
/*
* Debug a B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is the byte immediately
* after the B-tree signature.
*/
H5B_subid_t subtype = (H5B_subid_t)sig[H5B_SIZEOF_MAGIC];
unsigned ndims;
switch(subtype) {
case H5B_SNODE_ID:
/* Check for extra parameters */
if(extra == 0) {
fprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n");
fprintf(stderr, "B-tree symbol table node usage:\n");
fprintf(stderr, "\th5debug <filename> <B-tree node address> <address of local heap>\n\n");
} /* end if */
status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra);
break;
case H5B_ISTORE_ID:
/* Check for extra parameters */
if(extra == 0) {
fprintf(stderr, "ERROR: Need number of dimensions of chunk in order to dump chunk B-tree node\n");
fprintf(stderr, "B-tree chunked storage node usage:\n");
fprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions>\n");
HDexit(4);
} /* end if */
ndims = (unsigned)extra;
status = H5D_istore_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, ndims);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
}
} else if(!HDmemcmp(sig, H5B2_HDR_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is two bytes after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC+1];
switch(subtype) {
case H5B2_TEST_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST);
break;
case H5B2_FHEAP_HUGE_INDIR_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_INDIR);
break;
case H5B2_FHEAP_HUGE_FILT_INDIR_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_INDIR);
break;
case H5B2_FHEAP_HUGE_DIR_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_DIR);
break;
case H5B2_FHEAP_HUGE_FILT_DIR_ID:
status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_DIR);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if(!HDmemcmp(sig, H5B2_INT_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is the byte after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC + 1];
/* Check for enough valid parameters */
if(extra == 0 || extra2 == 0 || extra3 == 0) {
fprintf(stderr, "ERROR: Need v2 B-tree header address and the node's number of records and depth in order to dump internal node\n");
fprintf(stderr, "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n");
fprintf(stderr, "v2 B-tree internal node usage:\n");
fprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> <number of records> <depth>\n");
HDexit(4);
} /* end if */
switch(subtype) {
case H5B2_TEST_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST, extra, (unsigned)extra2, (unsigned)extra3);
break;
case H5B2_FHEAP_HUGE_INDIR_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_INDIR, extra, (unsigned)extra2, (unsigned)extra3);
break;
case H5B2_FHEAP_HUGE_FILT_INDIR_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_INDIR, extra, (unsigned)extra2, (unsigned)extra3);
break;
case H5B2_FHEAP_HUGE_DIR_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_DIR, extra, (unsigned)extra2, (unsigned)extra3);
break;
case H5B2_FHEAP_HUGE_FILT_DIR_ID:
status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_DIR, extra, (unsigned)extra2, (unsigned)extra3);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if(!HDmemcmp(sig, H5B2_LEAF_MAGIC, H5B2_SIZEOF_MAGIC)) {
/*
* Debug a v2 B-tree. B-trees are debugged through the B-tree
* subclass. The subclass identifier is the byte after the
* B-tree signature.
*/
H5B2_subid_t subtype = (H5B2_subid_t)sig[H5B2_SIZEOF_MAGIC + 1];
/* Check for enough valid parameters */
if(extra == 0 || extra2 == 0) {
fprintf(stderr, "ERROR: Need v2 B-tree header address and number of records in order to dump leaf node\n");
fprintf(stderr, "v2 B-tree leaf node usage:\n");
fprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records>\n");
HDexit(4);
} /* end if */
switch(subtype) {
case H5B2_TEST_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5B2_TEST, extra, (unsigned)extra2);
break;
case H5B2_FHEAP_HUGE_INDIR_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_INDIR, extra, (unsigned)extra2);
break;
case H5B2_FHEAP_HUGE_FILT_INDIR_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_INDIR, extra, (unsigned)extra2);
break;
case H5B2_FHEAP_HUGE_DIR_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_DIR, extra, (unsigned)extra2);
break;
case H5B2_FHEAP_HUGE_FILT_DIR_ID:
status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, H5HF_BT2_FILT_DIR, extra, (unsigned)extra2);
break;
default:
fprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype));
HDexit(4);
} /* end switch */
} else if(!HDmemcmp(sig, H5HF_HDR_MAGIC, H5HF_SIZEOF_MAGIC)) {
/*
* Debug a fractal heap header.
*/
status = H5HF_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if(!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, H5HF_SIZEOF_MAGIC)) {
/*
* Debug a fractal heap direct block.
*/
/* Check for enough valid parameters */
if(extra == 0 || extra2 == 0) {
fprintf(stderr, "ERROR: Need fractal heap header address and size of direct block in order to dump direct block\n");
fprintf(stderr, "Fractal heap direct block usage:\n");
fprintf(stderr, "\th5debug <filename> <direct block address> <heap header address> <size of direct block>\n");
HDexit(4);
} /* end if */
status = H5HF_dblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (size_t)extra2);
} else if(!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, H5HF_SIZEOF_MAGIC)) {
/*
* Debug a fractal heap indirect block.
*/
/* Check for enough valid parameters */
if(extra == 0 || extra2 == 0) {
fprintf(stderr, "ERROR: Need fractal heap header address and number of rows in order to dump indirect block\n");
fprintf(stderr, "Fractal heap indirect block usage:\n");
fprintf(stderr, "\th5debug <filename> <indirect block address> <heap header address> <number of rows>\n");
HDexit(4);
} /* end if */
status = H5HF_iblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (unsigned)extra2);
} else if(!HDmemcmp(sig, H5FS_HDR_MAGIC, H5FS_SIZEOF_MAGIC)) {
/*
* Debug a free space header.
*/
status = H5FS_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if(!HDmemcmp(sig, H5FS_SINFO_MAGIC, H5FS_SIZEOF_MAGIC)) {
/*
* Debug free space serialized sections.
*/
/* Check for enough valid parameters */
if(extra == 0 || extra2 == 0) {
fprintf(stderr, "ERROR: Need free space header address and client address in order to dump serialized sections\n");
fprintf(stderr, "Free space serialized sections usage:\n");
fprintf(stderr, "\th5debug <filename> <serialized sections address> <free space header address> <client address>\n");
HDexit(4);
} /* end if */
status = H5FS_sects_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, extra2);
} else if(!HDmemcmp(sig, H5O_HDR_MAGIC, H5O_SIZEOF_MAGIC)) {
/*
* Debug v2 object header (which have signatures).
*/
status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else if(sig[0] == H5O_VERSION_1) {
/*
* This could be a v1 object header. Since they don't have a signature
* it's a somewhat "ify" detection.
*/
status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL);
} else {
/*
* Got some other unrecognized signature.
*/
printf("%-*s ", VCOL, "Signature:");
for (u = 0; u < sizeof(sig); u++) {
if (sig[u] > ' ' && sig[u] <= '~' && '\\' != sig[u])
HDputchar(sig[u]);
else if ('\\' == sig[u]) {
HDputchar('\\');
HDputchar('\\');
} else
printf("\\%03o", sig[u]);
}
HDputchar('\n');
fprintf(stderr, "unknown signature\n");
HDexit(4);
} /* end else */
/* Check for an error when dumping information */
if(status < 0) {
fprintf(stderr, "An error occurred!\n");
H5Eprint(stderr);
HDexit(5);
} /* end if */
H5Pclose(dxpl);
H5Pclose(fapl);
H5Fclose(fid);
return 0;
} /* main() */
|
