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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "hdf5.h"
#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
/* Name of tool */
#define PROGRAMNAME "h5jam"
herr_t write_pad(int ofile, hsize_t old_where, hsize_t *new_where);
hsize_t compute_user_block_size(hsize_t);
hsize_t copy_some_to_file(int, int, hsize_t, hsize_t, ssize_t);
void parse_command_line(int, const char *const *);
int do_clobber = FALSE;
char *output_file = NULL;
char *input_file = NULL;
char *ub_file = NULL;
/*
* Command-line options: The user can specify short or long-named
* parameters. The long-named ones can be partially spelled. When
* adding more, make sure that they don't clash with each other.
*/
static const char *s_opts = "hi:u:o:c:V";
static struct long_options l_opts[] = {{"help", no_arg, 'h'}, {"i", require_arg, 'i'},
{"u", require_arg, 'u'}, {"o", require_arg, 'o'},
{"clobber", no_arg, 'c'}, {NULL, 0, '\0'}};
/*-------------------------------------------------------------------------
* Function: usage
*
* Purpose: Print the usage message
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
usage(const char *prog)
{
HDfflush(stdout);
HDfprintf(stdout, "usage: %s -i <in_file.h5> -u <in_user_file> [-o <out_file.h5>] [--clobber]\n", prog);
HDfprintf(stdout, "\n");
HDfprintf(stdout, "Adds user block to front of an HDF5 file and creates a new concatenated file.\n");
HDfprintf(stdout, "\n");
HDfprintf(stdout, "OPTIONS\n");
HDfprintf(stdout, " -i in_file.h5 Specifies the input HDF5 file.\n");
HDfprintf(stdout, " -u in_user_file Specifies the file to be inserted into the user block.\n");
HDfprintf(stdout, " Can be any file format except an HDF5 format.\n");
HDfprintf(stdout, " -o out_file.h5 Specifies the output HDF5 file.\n");
HDfprintf(stdout, " If not specified, the user block will be concatenated in\n");
HDfprintf(stdout, " place to the input HDF5 file.\n");
HDfprintf(stdout, " --clobber Wipes out any existing user block before concatenating\n");
HDfprintf(stdout, " the given user block.\n");
HDfprintf(stdout, " The size of the new user block will be the larger of;\n");
HDfprintf(stdout, " - the size of existing user block in the input HDF5 file\n");
HDfprintf(stdout, " - the size of user block required by new input user file\n");
HDfprintf(stdout, " (size = 512 x 2N, N is positive integer.)\n");
HDfprintf(stdout, "\n");
HDfprintf(stdout, " -h Prints a usage message and exits.\n");
HDfprintf(stdout, " -V Prints the HDF5 library version and exits.\n");
HDfprintf(stdout, "\n");
HDfprintf(stdout, "Exit Status:\n");
HDfprintf(stdout, " 0 Succeeded.\n");
HDfprintf(stdout, " >0 An error occurred.\n");
}
/*-------------------------------------------------------------------------
* Function: leave
*
* Purpose: Shutdown and call exit()
*
* Return: Does not return
*-------------------------------------------------------------------------
*/
static void
leave(int ret)
{
h5tools_close();
HDexit(ret);
}
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parse the command line for the h5dumper.
*
* Return: Success:
* Failure: Exits program with EXIT_FAILURE value.
*-------------------------------------------------------------------------
*/
void
parse_command_line(int argc, const char *const *argv)
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
case 'o':
output_file = HDstrdup(opt_arg);
break;
case 'i':
input_file = HDstrdup(opt_arg);
break;
case 'u':
ub_file = HDstrdup(opt_arg);
break;
case 'c':
do_clobber = TRUE;
break;
case 'h':
usage(h5tools_getprogname());
leave(EXIT_SUCCESS);
break;
case 'V':
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
break;
case '?':
default:
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
}
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: HDF5 user block jammer
*
* Return: Success: 0
* Failure: 1
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
int ufid = -1;
int h5fid = -1;
int ofid = -1;
hid_t ifile = H5I_INVALID_HID;
hid_t plist = H5I_INVALID_HID;
herr_t status;
htri_t testval;
hsize_t usize;
hsize_t h5fsize;
hsize_t startub;
hsize_t where;
hsize_t newubsize;
off_t fsize;
h5_stat_t sbuf;
h5_stat_t sbuf2;
int res;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Initialize h5tools lib */
h5tools_init();
parse_command_line(argc, (const char *const *)argv);
/* enable error reporting if command line option */
h5tools_error_report();
if (ub_file == NULL) {
/* no user block */
error_msg("missing argument for -u <user_file>.\n");
help_ref_msg(stderr);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
testval = H5Fis_accessible(ub_file, H5P_DEFAULT);
if (testval > 0) {
error_msg("-u <user_file> cannot be HDF5 file, but it appears to be an HDF5 file.\n");
help_ref_msg(stderr);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
if (input_file == NULL) {
error_msg("missing argument for -i <HDF5 file>.\n");
help_ref_msg(stderr);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
testval = H5Fis_accessible(input_file, H5P_DEFAULT);
if (testval <= 0) {
error_msg("Input HDF5 file \"%s\" is not HDF5 format.\n", input_file);
help_ref_msg(stderr);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
ifile = H5Fopen(input_file, H5F_ACC_RDONLY, H5P_DEFAULT);
if (ifile < 0) {
error_msg("Can't open input HDF5 file \"%s\"\n", input_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
plist = H5Fget_create_plist(ifile);
if (plist < 0) {
error_msg("Can't get file creation plist for file \"%s\"\n", input_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
status = H5Pget_userblock(plist, &usize);
if (status < 0) {
error_msg("Can't get user block for file \"%s\"\n", input_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
H5Pclose(plist);
plist = H5I_INVALID_HID;
H5Fclose(ifile);
ifile = H5I_INVALID_HID;
ufid = HDopen(ub_file, O_RDONLY);
if (ufid < 0) {
error_msg("unable to open user block file \"%s\"\n", ub_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
res = HDfstat(ufid, &sbuf);
if (res < 0) {
error_msg("Can't stat file \"%s\"\n", ub_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
fsize = (off_t)sbuf.st_size;
h5fid = HDopen(input_file, O_RDONLY);
if (h5fid < 0) {
error_msg("unable to open HDF5 file for read \"%s\"\n", input_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
res = HDfstat(h5fid, &sbuf2);
if (res < 0) {
error_msg("Can't stat file \"%s\"\n", input_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
h5fsize = (hsize_t)sbuf2.st_size;
if (output_file == NULL) {
ofid = HDopen(input_file, O_WRONLY);
if (ofid < 0) {
error_msg("unable to open output file \"%s\"\n", output_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
}
else {
ofid = HDopen(output_file, O_WRONLY | O_CREAT | O_TRUNC, H5_POSIX_CREATE_MODE_RW);
if (ofid < 0) {
error_msg("unable to create output file \"%s\"\n", output_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
}
newubsize = compute_user_block_size((hsize_t)fsize);
startub = usize;
if (usize > 0) {
if (do_clobber == TRUE) {
/* where is max of the current size or the new UB */
if (usize > newubsize) {
newubsize = usize;
}
startub = 0; /*blast the old */
}
else {
/* add new ub to current ublock, pad to new offset */
newubsize += usize;
newubsize = compute_user_block_size((hsize_t)newubsize);
}
}
/* copy the HDF5 from starting at usize to starting at newubsize:
* makes room at 'from' for new ub */
/* if no current ub, usize is 0 */
copy_some_to_file(h5fid, ofid, usize, newubsize, (ssize_t)(h5fsize - usize));
/* copy the old ub to the beginning of the new file */
if (!do_clobber) {
where = copy_some_to_file(h5fid, ofid, (hsize_t)0, (hsize_t)0, (ssize_t)usize);
}
/* copy the new ub to the end of the ub */
where = copy_some_to_file(ufid, ofid, (hsize_t)0, startub, (ssize_t)-1);
/* pad the ub */
if (write_pad(ofid, where, &where) < 0) {
error_msg("Can't pad file \"%s\"\n", output_file);
h5tools_setstatus(EXIT_FAILURE);
goto done;
} /* end if */
done:
if (ub_file)
HDfree(ub_file);
if (input_file)
HDfree(input_file);
if (output_file)
HDfree(output_file);
if (plist >= 0)
H5Pclose(plist);
if (ifile >= 0)
H5Fclose(ifile);
if (ufid >= 0)
HDclose(ufid);
if (h5fid >= 0)
HDclose(h5fid);
if (ofid >= 0)
HDclose(ofid);
leave(h5tools_getstatus());
}
/*-------------------------------------------------------------------------
* Function: copy_some_to_file
*
* Purpose: Copy part of the input file to output.
* infid: fd of file to read
* outfid: fd of file to write
* starting: offset of where to read from infid
* startout: offset of where to write to outfid
* limit: bytes to read/write
*
* If limit is < 0, the entire input file is copied.
*
* Note: this routine can be used to copy within
* the same file, i.e., infid and outfid can be the
* same file.
*
* Return: Success: last byte written in the output.
* Failure: Exits program with EXIT_FAILURE value.
*-------------------------------------------------------------------------
*/
hsize_t
copy_some_to_file(int infid, int outfid, hsize_t starting, hsize_t startout, ssize_t limit)
{
char buf[1024];
h5_stat_t sbuf;
int res;
ssize_t tot = 0;
ssize_t howmuch = 0;
ssize_t nchars = -1;
ssize_t to;
ssize_t from;
ssize_t toend;
ssize_t fromend;
if (starting > startout) {
/* this case is prohibited */
error_msg("copy_some_to_file: panic: starting > startout?\n");
exit(EXIT_FAILURE);
} /* end if */
if (limit < 0) {
res = HDfstat(infid, &sbuf);
if (res < 0) {
error_msg("Can't stat file \n");
HDexit(EXIT_FAILURE);
} /* end if */
howmuch = (ssize_t)sbuf.st_size;
}
else {
howmuch = limit;
} /* end if */
if (0 == howmuch)
return 0;
toend = (ssize_t)startout + howmuch;
fromend = (ssize_t)starting + howmuch;
if (howmuch > 512) {
to = toend - 512;
from = fromend - 512;
}
else {
to = toend - howmuch;
from = fromend - howmuch;
} /* end if */
while (howmuch > 0) {
HDlseek(outfid, (off_t)to, SEEK_SET);
HDlseek(infid, (off_t)from, SEEK_SET);
if (howmuch > 512) {
nchars = HDread(infid, buf, (unsigned)512);
}
else {
nchars = HDread(infid, buf, (unsigned)howmuch);
} /* end if */
if (nchars <= 0) {
error_msg("Read error \n");
HDexit(EXIT_FAILURE);
} /* end if */
if (HDwrite(outfid, buf, (unsigned)nchars) < 0) {
error_msg("Write error \n");
HDexit(EXIT_FAILURE);
}
tot += nchars;
howmuch -= nchars;
if (howmuch > 512) {
to -= nchars;
from -= nchars;
}
else {
to -= howmuch;
from -= howmuch;
} /* end if */
} /* end while */
return (hsize_t)tot + (hsize_t)startout;
} /* end copy_some_to_file() */
/*-------------------------------------------------------------------------
* Function: compute_user_block_size
*
* Purpose: Find the offset of the HDF5 header after the user block:
* align at 0, 512, 1024, etc.
* ublock_size: the size of the user block (bytes).
*
* Return: Success: the location of the header == the size of the padded user block.
* Failure: none
*-------------------------------------------------------------------------
*/
H5_ATTR_CONST hsize_t
compute_user_block_size(hsize_t ublock_size)
{
hsize_t where = 512;
if (0 == ublock_size)
return 0;
while (where < ublock_size)
where *= 2;
return where;
} /* end compute_user_block_size() */
/*-------------------------------------------------------------------------
* Write zeroes to fill the file from 'where' to 512, 1024, etc. bytes.
*
* Sets new_where to the size of the padded file and
* returns SUCCEED/FAIL.
*-------------------------------------------------------------------------
*/
herr_t
write_pad(int ofile, hsize_t old_where, hsize_t *new_where)
{
unsigned int i;
char buf[1];
hsize_t psize;
if (new_where == NULL)
return FAIL;
buf[0] = '\0';
HDlseek(ofile, (off_t)old_where, SEEK_SET);
psize = compute_user_block_size(old_where);
psize -= old_where;
for (i = 0; i < psize; i++)
if (HDwrite(ofile, buf, 1) < 0)
return FAIL;
/* Set the new size of the file. */
*new_where = old_where + psize;
return SUCCEED;
} /* end write_pad() */
|