1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
2689
2690
2691
2692
2693
2694
2695
2696
2697
2698
2699
2700
2701
2702
2703
2704
2705
2706
2707
2708
2709
2710
2711
2712
2713
2714
2715
2716
2717
2718
2719
2720
2721
2722
2723
2724
2725
2726
2727
2728
2729
2730
2731
2732
2733
2734
2735
2736
2737
2738
2739
2740
2741
2742
2743
2744
2745
2746
2747
2748
2749
2750
2751
2752
2753
2754
2755
2756
2757
2758
2759
2760
2761
2762
2763
2764
2765
2766
2767
2768
2769
2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
2781
2782
2783
2784
2785
2786
2787
2788
2789
2790
2791
2792
2793
2794
2795
2796
2797
2798
2799
2800
2801
2802
2803
2804
2805
2806
2807
2808
2809
2810
2811
2812
2813
2814
2815
2816
2817
2818
2819
2820
2821
2822
2823
2824
2825
2826
2827
2828
2829
2830
2831
2832
2833
2834
2835
2836
2837
2838
2839
2840
2841
2842
2843
2844
2845
2846
2847
2848
2849
2850
2851
2852
2853
2854
2855
2856
2857
2858
2859
2860
2861
2862
2863
2864
2865
2866
2867
2868
2869
2870
2871
2872
2873
2874
2875
2876
2877
2878
2879
2880
2881
2882
2883
2884
2885
2886
2887
2888
2889
2890
2891
2892
2893
2894
2895
2896
2897
2898
2899
2900
2901
2902
2903
2904
2905
2906
2907
2908
2909
2910
2911
2912
2913
2914
2915
2916
2917
2918
2919
2920
2921
2922
2923
2924
2925
2926
2927
2928
2929
2930
2931
2932
2933
2934
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
2948
2949
2950
2951
2952
2953
2954
2955
2956
2957
2958
2959
2960
2961
2962
2963
2964
2965
2966
2967
2968
2969
2970
2971
2972
2973
2974
2975
2976
2977
2978
2979
2980
2981
2982
2983
2984
2985
2986
2987
2988
2989
2990
2991
2992
2993
2994
2995
2996
2997
2998
2999
3000
3001
3002
3003
3004
3005
3006
3007
3008
3009
3010
3011
3012
3013
3014
3015
3016
3017
3018
3019
3020
3021
3022
3023
3024
3025
3026
3027
3028
3029
3030
3031
3032
3033
3034
3035
3036
3037
3038
3039
3040
3041
3042
3043
3044
3045
3046
3047
3048
3049
3050
3051
3052
3053
3054
3055
3056
3057
3058
3059
3060
3061
3062
3063
3064
3065
3066
3067
3068
3069
3070
3071
3072
3073
3074
3075
3076
3077
3078
3079
3080
3081
3082
3083
3084
3085
3086
3087
3088
3089
3090
3091
3092
3093
3094
3095
3096
3097
3098
3099
3100
3101
3102
3103
3104
3105
3106
3107
3108
3109
3110
3111
3112
3113
3114
3115
3116
3117
3118
3119
3120
3121
3122
3123
3124
3125
3126
3127
3128
3129
3130
3131
3132
3133
3134
3135
3136
3137
3138
3139
3140
3141
3142
3143
3144
3145
3146
3147
3148
3149
3150
3151
3152
3153
3154
3155
3156
3157
3158
3159
3160
3161
3162
3163
3164
3165
3166
3167
3168
3169
3170
3171
3172
3173
3174
3175
3176
3177
3178
3179
3180
3181
3182
3183
3184
3185
3186
3187
3188
3189
3190
3191
3192
3193
3194
3195
3196
3197
3198
3199
3200
3201
3202
3203
3204
3205
3206
3207
3208
3209
3210
3211
3212
3213
3214
3215
3216
3217
3218
3219
3220
3221
3222
3223
3224
3225
3226
3227
3228
3229
3230
3231
3232
3233
3234
3235
3236
3237
3238
3239
3240
3241
3242
3243
3244
3245
3246
3247
3248
3249
3250
3251
3252
3253
3254
3255
3256
3257
3258
3259
3260
3261
3262
3263
3264
3265
3266
3267
3268
3269
3270
3271
3272
3273
3274
3275
3276
3277
3278
3279
3280
3281
3282
3283
3284
3285
3286
3287
3288
3289
3290
3291
3292
3293
3294
3295
3296
3297
3298
3299
3300
3301
3302
3303
3304
3305
3306
3307
3308
3309
3310
3311
3312
3313
3314
3315
3316
3317
3318
3319
3320
3321
3322
3323
3324
3325
3326
3327
3328
3329
3330
3331
3332
3333
3334
3335
3336
3337
3338
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
3349
3350
3351
3352
3353
3354
3355
3356
3357
3358
3359
3360
3361
3362
3363
3364
3365
3366
3367
3368
3369
3370
3371
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Robb Matzke <matzke@llnl.gov>
* Monday, March 23, 1998
*/
/*
* We include the private header file so we can get to the uniform
* programming environment it declares. Other than that, h5ls only calls
* HDF5 API functions (except for H5G_basename())
*/
#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
#include "h5tools_dump.h"
#include "h5trav.h"
/* Name of tool */
#define PROGRAMNAME "h5ls"
#define NAME_BUF_SIZE 2048
/*
* Alternative formating for data dumped by H5LS
*
* This table only affects H5LS output.
*/
static h5tool_format_t ls_dataformat = {
0, /*raw */
"", /*fmt_raw */
"%d", /*fmt_int */
"%u", /*fmt_uint */
"%hhd", /*fmt_schar */
"%u", /*fmt_uchar */
"%d", /*fmt_short */
"%u", /*fmt_ushort */
"%ld", /*fmt_long */
"%lu", /*fmt_ulong */
NULL, /*fmt_llong */
NULL, /*fmt_ullong */
"%g", /*fmt_double */
"%g", /*fmt_float */
0, /*ascii */
0, /*str_locale */
0, /*str_repeat */
"[", /*arr_pre */
",", /*arr_sep */
"]", /*arr_suf */
1, /*arr_linebreak */
"", /*cmpd_name */
",", /*cmpd_sep */
"{", /*cmpd_pre */
"}", /*cmpd_suf */
"", /*cmpd_end */
NULL, /* cmpd_listv */
",", /*vlen_sep */
"(", /*vlen_pre */
")", /*vlen_suf */
"", /*vlen_end */
"%s", /*elmt_fmt */
",", /*elmt_suf1 */
" ", /*elmt_suf2 */
HSIZE_T_FORMAT, /*idx_n_fmt */
",", /*idx_sep */
"(%s)", /*idx_fmt */
65535, /*line_ncols *//*standard default columns */
0, /*line_per_line */
"", /*line_pre */
"%s", /*line_1st */
"%s", /*line_cont */
"", /*line_suf */
"", /*line_sep */
1, /*line_multi_new */
" ", /*line_indent */
0, /*skip_first */
0, /*obj_hidefileno */
"-%lu:%" PRIuHADDR, /*obj_format */
0, /*dset_hidefileno */
"DSET-%s ", /*dset_format */
"%sBlk%lu: ", /*dset_blockformat_pre */
"%sPt%lu: ", /*dset_ptformat_pre */
"%s", /*dset_ptformat */
1, /*array indices */
1 /*escape non printable characters */
};
/* Struct to pass through to visitors */
typedef struct {
const char *fname; /* Filename */
hid_t fid; /* File ID */
hid_t gid; /* Group ID */
hbool_t symlink_target; /* Whether this is the target of an symbolic link */
symlink_trav_t *symlink_list; /* List of visited symbolic links */
size_t base_len; /* Length of base path name, if not root */
size_t name_start; /* # of leading characters to strip off path names on output */
}iter_t;
/* Command-line switches */
static int verbose_g = 0; /* lots of extra output */
static int width_g = 80; /* output width in characters */
static hbool_t address_g = FALSE; /* print raw data addresses */
static hbool_t data_g = FALSE; /* display dataset values? */
static hbool_t label_g = FALSE; /* label compound values? */
static hbool_t string_g = FALSE; /* print 1-byte numbers as ASCII? */
static hbool_t fullname_g = FALSE; /* print full path names */
static hbool_t recursive_g = FALSE; /* recursive descent listing */
static hbool_t follow_symlink_g = FALSE; /* follow symbolic links */
static hbool_t no_dangling_link_g = FALSE; /* treat dangling link is error */
static hbool_t follow_elink_g = FALSE; /* follow external links */
static hbool_t grp_literal_g = FALSE; /* list group, not contents */
static hbool_t hexdump_g = FALSE; /* show data as raw hexadecimal */
static hbool_t simple_output_g = FALSE; /* make output more machine-readable */
static hbool_t show_file_name_g = FALSE; /* show file name for full names */
static hbool_t no_line_wrap_g = FALSE; /* show data content without line wrap */
static hbool_t display_root_g = FALSE; /* show root group in output? */
/* Information about how to display each type of object */
static struct dispatch_t {
const char *name;
hid_t (*open)(hid_t loc, const char *name, hid_t apl_id);
herr_t (*close)(hid_t obj);
herr_t (*list1)(hid_t obj);
herr_t (*list2)(hid_t obj, const char *name);
} dispatch_g[H5O_TYPE_NTYPES];
#define DISPATCH(TYPE, NAME, LIST1, LIST2) { \
dispatch_g[TYPE].name = (NAME); \
dispatch_g[TYPE].list1 = (LIST1); \
dispatch_g[TYPE].list2 = (LIST2); \
}
static void print_type(h5tools_str_t *buffer, hid_t type, int ind);
static hbool_t print_int_type(h5tools_str_t *buffer, hid_t type, int ind);
static hbool_t print_float_type(h5tools_str_t *buffer, hid_t type, int ind);
static herr_t visit_obj(hid_t file, const char *oname, iter_t *iter);
/*-------------------------------------------------------------------------
* Function: usage
*
* Purpose: Prints a usage message on stderr and then returns.
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
usage (void)
{
FLUSHSTREAM(rawoutstream);
PRINTVALSTREAM(rawoutstream, "usage: h5ls [OPTIONS] file[/OBJECT] [file[/[OBJECT]...]\n");
PRINTVALSTREAM(rawoutstream, " OPTIONS\n");
PRINTVALSTREAM(rawoutstream, " -h, -?, --help Print a usage message and exit\n");
PRINTVALSTREAM(rawoutstream, " -a, --address Print raw data address. If dataset is contiguous, address\n");
PRINTVALSTREAM(rawoutstream, " is offset in file of beginning of raw data. If chunked,\n");
PRINTVALSTREAM(rawoutstream, " returned list of addresses indicates offset of each chunk.\n");
PRINTVALSTREAM(rawoutstream, " Must be used with -v, --verbose option.\n");
PRINTVALSTREAM(rawoutstream, " Provides no information for non-dataset objects.\n");
PRINTVALSTREAM(rawoutstream, " -d, --data Print the values of datasets\n");
PRINTVALSTREAM(rawoutstream, " --enable-error-stack\n");
PRINTVALSTREAM(rawoutstream, " Prints messages from the HDF5 error stack as they occur.\n");
PRINTVALSTREAM(rawoutstream, " --follow-symlinks\n");
PRINTVALSTREAM(rawoutstream, " Follow symbolic links (soft links and external links)\n");
PRINTVALSTREAM(rawoutstream, " to display target object information.\n");
PRINTVALSTREAM(rawoutstream, " Without this option, h5ls identifies a symbolic link\n");
PRINTVALSTREAM(rawoutstream, " as a soft link or external link and prints the value\n");
PRINTVALSTREAM(rawoutstream, " assigned to the symbolic link; it does not provide any\n");
PRINTVALSTREAM(rawoutstream, " information regarding the target object or determine\n");
PRINTVALSTREAM(rawoutstream, " whether the link is a dangling link.\n");
PRINTVALSTREAM(rawoutstream, " --no-dangling-links\n");
PRINTVALSTREAM(rawoutstream, " Must be used with --follow-symlinks option;\n");
PRINTVALSTREAM(rawoutstream, " otherwise, h5ls shows error message and returns an exit\n");
PRINTVALSTREAM(rawoutstream, " code of 1.\n");
PRINTVALSTREAM(rawoutstream, " Check for any symbolic links (soft links or external links)\n");
PRINTVALSTREAM(rawoutstream, " that do not resolve to an existing object (dataset, group,\n");
PRINTVALSTREAM(rawoutstream, " or named datatype).\n");
PRINTVALSTREAM(rawoutstream, " If any dangling link is found, this situation is treated\n");
PRINTVALSTREAM(rawoutstream, " as an error and h5ls returns an exit code of 1.\n");
PRINTVALSTREAM(rawoutstream, " -f, --full Print full path names instead of base names\n");
PRINTVALSTREAM(rawoutstream, " -g, --group Show information about a group, not its contents\n");
PRINTVALSTREAM(rawoutstream, " -l, --label Label members of compound datasets\n");
PRINTVALSTREAM(rawoutstream, " -r, --recursive List all groups recursively, avoiding cycles\n");
PRINTVALSTREAM(rawoutstream, " -s, --string Print 1-byte integer datasets as ASCII\n");
PRINTVALSTREAM(rawoutstream, " -S, --simple Use a machine-readable output format\n");
PRINTVALSTREAM(rawoutstream, " -wN, --width=N Set the number of columns of output\n");
PRINTVALSTREAM(rawoutstream, " -v, --verbose Generate more verbose output\n");
PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n");
PRINTVALSTREAM(rawoutstream, " --vfd=DRIVER Use the specified virtual file driver\n");
PRINTVALSTREAM(rawoutstream, " -x, --hexdump Show raw data in hexadecimal format\n");
PRINTVALSTREAM(rawoutstream, " --s3-cred=C Supply S3 authentication information to \"ros3\" vfd.\n");
PRINTVALSTREAM(rawoutstream, " Accepts tuple of \"(<aws-region>,<access-id>,<access-key>)\".\n");
PRINTVALSTREAM(rawoutstream, " If absent or C->\"(,,)\", defaults to no-authentication.\n");
PRINTVALSTREAM(rawoutstream, " Has no effect if vfd flag not set to \"ros3\".\n");
PRINTVALSTREAM(rawoutstream, " --hdfs-attrs=A Supply configuration information to Hadoop VFD.\n");
PRINTVALSTREAM(rawoutstream, " Accepts tuple of (<namenode name>,<namenode port>,\n");
PRINTVALSTREAM(rawoutstream, " ...<kerberos cache path>,<username>,<buffer size>)\n");
PRINTVALSTREAM(rawoutstream, " If absent or A == '(,,,,)', all default values are used.\n");
PRINTVALSTREAM(rawoutstream, " Has no effect if vfd flag is not 'hdfs'.\n");
PRINTVALSTREAM(rawoutstream, " --vol-value Value (ID) of the VOL connector to use for opening the\n");
PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
PRINTVALSTREAM(rawoutstream, " --vol-name Name of the VOL connector to use for opening the\n");
PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
PRINTVALSTREAM(rawoutstream, " --vol-info VOL-specific info to pass to the VOL connector used for\n");
PRINTVALSTREAM(rawoutstream, " opening the HDF5 file specified\n");
PRINTVALSTREAM(rawoutstream, "\n");
PRINTVALSTREAM(rawoutstream, " file/OBJECT\n");
PRINTVALSTREAM(rawoutstream, " Each object consists of an HDF5 file name optionally followed by a\n");
PRINTVALSTREAM(rawoutstream, " slash and an object name within the file (if no object is specified\n");
PRINTVALSTREAM(rawoutstream, " within the file then the contents of the root group are displayed).\n");
PRINTVALSTREAM(rawoutstream, " The file name may include a printf(3C) integer format such as\n");
PRINTVALSTREAM(rawoutstream, " \"%%05d\" to open a file family.\n");
PRINTVALSTREAM(rawoutstream, "\n");
PRINTVALSTREAM(rawoutstream, " Deprecated Options\n");
PRINTVALSTREAM(rawoutstream, " The following options have been removed in HDF5 1.12. Use the indicated\n");
PRINTVALSTREAM(rawoutstream, " replacement option in all work.\n");
PRINTVALSTREAM(rawoutstream, "\n");
PRINTVALSTREAM(rawoutstream, " -E or --external Follow external links.\n");
PRINTVALSTREAM(rawoutstream, " Replaced by --follow-symlinks.\n");
PRINTVALSTREAM(rawoutstream, " -e, --errors Show all HDF5 error reporting\n");
PRINTVALSTREAM(rawoutstream, " Replaced by --enable-error-stack.\n");
}
/*-------------------------------------------------------------------------
* Function: print_string
*
* Purpose: Print a string value by escaping unusual characters. If
* STREAM is null then we only count how large the output would be.
*
* Return: Number of characters printed.
*-------------------------------------------------------------------------
*/
static int
print_string(h5tools_str_t *buffer, const char *s, hbool_t escape_spaces)
{
int nprint=0;
for (/*void*/; s && *s; s++) {
switch (*s) {
case '"':
if (buffer)
h5tools_str_append(buffer, "\\\"");
nprint += 2;
break;
case '\\':
if (buffer)
h5tools_str_append(buffer, "\\\\");
nprint += 2;
break;
case '\b':
if (buffer)
h5tools_str_append(buffer, "\\b");
nprint += 2;
break;
case '\f':
if (buffer)
h5tools_str_append(buffer, "\\f");
nprint += 2;
break;
case '\n':
if (buffer)
h5tools_str_append(buffer, "\\n");
nprint += 2;
break;
case '\r':
if (buffer)
h5tools_str_append(buffer, "\\r");
nprint += 2;
break;
case '\t':
if (buffer)
h5tools_str_append(buffer, "\\t");
nprint += 2;
break;
case ' ':
if (escape_spaces) {
if (buffer)
h5tools_str_append(buffer, "\\ ");
nprint += 2;
}
else {
if (buffer)
h5tools_str_append(buffer, " ");
nprint++;
}
break;
default:
if (isprint((int)*s)) {
if (buffer)
h5tools_str_append(buffer, "%c", *s);
nprint++;
}
else {
if (buffer)
h5tools_str_append(buffer, "\\%03o", *((const unsigned char*)s));
nprint += 4;
}
break;
}
}
return nprint;
}
/*-------------------------------------------------------------------------
* Function: print_obj_name
*
* Purpose: Print an object name and another string.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static int
print_obj_name(h5tools_str_t *buffer, const iter_t *iter, const char *oname, const char *s)
{
static char fullname[NAME_BUF_SIZE]; /* Buffer for file and/or object name */
const char *name = fullname; /* Pointer to buffer for printing */
int n;
if (show_file_name_g)
HDsnprintf(fullname, sizeof(fullname), "%s/%s", iter->fname, oname + iter->name_start);
else
name = oname + iter->name_start;
/* Print the object name, either full name or base name */
if (fullname_g)
n = print_string(buffer, name, TRUE);
else {
const char *last_sep; /* The location of the last group separator */
/* Find the last component of the path name */
if (NULL == (last_sep = HDstrrchr(name, '/')))
last_sep = name;
else {
last_sep++;
} /* end else */
n = print_string(buffer, last_sep, TRUE);
} /* end else */
h5tools_str_append(buffer, "%*s ", MAX(0, (24 - n)), s);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_native_type
*
* Purpose: Prints the name of a native C data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed.
*-------------------------------------------------------------------------
*/
static hbool_t
print_native_type(h5tools_str_t *buffer, hid_t type, int ind)
{
if (!simple_output_g) {
if (H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) {
h5tools_str_append(buffer, "native signed char");
}
else if (H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) {
h5tools_str_append(buffer, "native unsigned char");
}
else if (H5Tequal(type, H5T_NATIVE_INT) == TRUE) {
h5tools_str_append(buffer, "native int");
}
else if (H5Tequal(type, H5T_NATIVE_UINT) == TRUE) {
h5tools_str_append(buffer, "native unsigned int");
}
else if (H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) {
h5tools_str_append(buffer, "native short");
}
else if (H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) {
h5tools_str_append(buffer, "native unsigned short");
}
else if (H5Tequal(type, H5T_NATIVE_LONG) == TRUE) {
h5tools_str_append(buffer, "native long");
}
else if (H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) {
h5tools_str_append(buffer, "native unsigned long");
}
else if (H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) {
h5tools_str_append(buffer, "native long long");
}
else if (H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) {
h5tools_str_append(buffer, "native unsigned long long");
}
else if (H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) {
h5tools_str_append(buffer, "native float");
}
else if (H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) {
h5tools_str_append(buffer, "native double");
}
#if H5_SIZEOF_LONG_DOUBLE !=0
else if (H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) {
h5tools_str_append(buffer, "native long double");
}
#endif
else if (H5Tequal(type, H5T_NATIVE_INT8) == TRUE) {
h5tools_str_append(buffer, "native int8_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT8) == TRUE) {
h5tools_str_append(buffer, "native uint8_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT16) == TRUE) {
h5tools_str_append(buffer, "native int16_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT16) == TRUE) {
h5tools_str_append(buffer, "native uint16_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT32) == TRUE) {
h5tools_str_append(buffer, "native int32_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT32) == TRUE) {
h5tools_str_append(buffer, "native uint32_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT64) == TRUE) {
h5tools_str_append(buffer, "native int64_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT64) == TRUE) {
h5tools_str_append(buffer, "native uint64_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_LEAST8) == TRUE) {
h5tools_str_append(buffer, "native int_least8_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST8) == TRUE) {
h5tools_str_append(buffer, "native uint_least8_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_LEAST16) == TRUE) {
h5tools_str_append(buffer, "native int_least16_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST16) == TRUE) {
h5tools_str_append(buffer, "native uint_least16_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_LEAST32) == TRUE) {
h5tools_str_append(buffer, "native int_least32_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST32) == TRUE) {
h5tools_str_append(buffer, "native uint_least32_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_LEAST64) == TRUE) {
h5tools_str_append(buffer, "native int_least64_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST64) == TRUE) {
h5tools_str_append(buffer, "native uint_least64_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_FAST8) == TRUE) {
h5tools_str_append(buffer, "native int_fast8_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_FAST8) == TRUE) {
h5tools_str_append(buffer, "native uint_fast8_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_FAST16) == TRUE) {
h5tools_str_append(buffer, "native int_fast16_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_FAST16) == TRUE) {
h5tools_str_append(buffer, "native uint_fast16_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_FAST32) == TRUE) {
h5tools_str_append(buffer, "native int_fast32_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_FAST32) == TRUE) {
h5tools_str_append(buffer, "native uint_fast32_t");
}
else if (H5Tequal(type, H5T_NATIVE_INT_FAST64) == TRUE) {
h5tools_str_append(buffer, "native int_fast64_t");
}
else if (H5Tequal(type, H5T_NATIVE_UINT_FAST64) == TRUE) {
h5tools_str_append(buffer, "native uint_fast64_t");
}
else if (H5Tequal(type, H5T_NATIVE_B8) == TRUE) {
h5tools_str_append(buffer, "native 8-bit field");
}
else if (H5Tequal(type, H5T_NATIVE_B16) == TRUE) {
h5tools_str_append(buffer, "native 16-bit field");
}
else if (H5Tequal(type, H5T_NATIVE_B32) == TRUE) {
h5tools_str_append(buffer, "native 32-bit field");
}
else if (H5Tequal(type, H5T_NATIVE_B64) == TRUE) {
h5tools_str_append(buffer, "native 64-bit field");
}
else if (H5Tequal(type, H5T_NATIVE_HSIZE) == TRUE) {
h5tools_str_append(buffer, "native hsize_t");
}
else if (H5Tequal(type, H5T_NATIVE_HSSIZE) == TRUE) {
h5tools_str_append(buffer, "native hssize_t");
}
else if (H5Tequal(type, H5T_NATIVE_HERR) == TRUE) {
h5tools_str_append(buffer, "native herr_t");
}
else if (H5Tequal(type, H5T_NATIVE_HBOOL) == TRUE) {
h5tools_str_append(buffer, "native hbool_t");
}
else {
return print_int_type(buffer, type, ind);
}
}
else {
return print_int_type(buffer, type, ind);
}
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_ieee_type
*
* Purpose: Print the name of an IEEE floating-point data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_ieee_type(h5tools_str_t *buffer, hid_t type, int ind)
{
if (H5Tequal(type, H5T_IEEE_F32BE) == TRUE) {
h5tools_str_append(buffer, "IEEE 32-bit big-endian float");
}
else if (H5Tequal(type, H5T_IEEE_F32LE) == TRUE) {
h5tools_str_append(buffer, "IEEE 32-bit little-endian float");
}
else if (H5Tequal(type, H5T_IEEE_F64BE) == TRUE) {
h5tools_str_append(buffer, "IEEE 64-bit big-endian float");
}
else if (H5Tequal(type, H5T_IEEE_F64LE) == TRUE) {
h5tools_str_append(buffer, "IEEE 64-bit little-endian float");
}
else {
return print_float_type(buffer, type, ind);
}
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_precision
*
* Purpose: Prints information on the next line about precision and
* padding if the precision is less than the total data type
* size.
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
print_precision(h5tools_str_t *buffer, hid_t type, int ind)
{
size_t prec; /* precision */
H5T_pad_t plsb, pmsb; /* lsb and msb padding */
const char *plsb_s=NULL; /* lsb padding string */
const char *pmsb_s=NULL; /* msb padding string */
size_t nbits; /* number of bits */
/* If the precision is less than the total size then show the precision
* and offset on the following line. Also display the padding
* information. */
if (8 * H5Tget_size(type) != (prec = H5Tget_precision(type))) {
h5tools_str_append(buffer, "\n%*s(%lu bit%s of precision beginning at bit %lu)",
ind, "", (unsigned long)prec, 1 == prec ? "" : "s", (unsigned long)H5Tget_offset(type));
H5Tget_pad(type, &plsb, &pmsb);
if (H5Tget_offset(type) > 0) {
switch(plsb) {
case H5T_PAD_ZERO:
plsb_s = "zero";
break;
case H5T_PAD_ONE:
plsb_s = "one";
break;
case H5T_PAD_BACKGROUND:
plsb_s = "bkg";
break;
case H5T_PAD_ERROR:
case H5T_NPAD:
plsb_s = "unknown";
break;
default:
break;
}
}
if ((unsigned)H5Tget_offset(type) + prec < 8 * H5Tget_size(type)) {
switch(pmsb) {
case H5T_PAD_ZERO:
pmsb_s = "zero";
break;
case H5T_PAD_ONE:
pmsb_s = "one";
break;
case H5T_PAD_BACKGROUND:
pmsb_s = "bkg";
break;
case H5T_PAD_ERROR:
case H5T_NPAD:
pmsb_s = "unknown";
break;
default:
break;
}
}
if (plsb_s || pmsb_s) {
h5tools_str_append(buffer, "\n%*s(", ind, "");
if (plsb_s) {
nbits = (unsigned)H5Tget_offset(type);
h5tools_str_append(buffer, "%lu %s bit%s at bit 0", (unsigned long)nbits, plsb_s, 1 == nbits ? "" : "s");
}
if (plsb_s && pmsb_s)
h5tools_str_append(buffer, ", ");
if (pmsb_s) {
nbits = (8 * H5Tget_size(type)) - ((unsigned)H5Tget_offset(type) + prec);
h5tools_str_append(buffer, "%lu %s bit%s at bit %lu", (unsigned long)nbits, pmsb_s, 1 == nbits ? "" : "s", (unsigned long)(8 * H5Tget_size(type) - nbits));
}
h5tools_str_append(buffer, ")");
}
}
}
/*-------------------------------------------------------------------------
* Function: print_int_type
*
* Purpose: Print the name of an integer data type. Common information
* like number of bits, byte order, and sign scheme appear on
* the first line. Additional information might appear in
* parentheses on the following lines.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_int_type(h5tools_str_t *buffer, hid_t type, int ind)
{
H5T_order_t order; /* byte order value */
const char *order_s = NULL; /* byte order string */
H5T_sign_t sign; /* sign scheme value */
const char *sign_s = NULL; /* sign scheme string */
if (H5T_INTEGER != H5Tget_class(type))
return FALSE;
/* Byte order */
if (H5Tget_size(type) > 1) {
order = H5Tget_order(type);
if (H5T_ORDER_LE == order) {
order_s = " little-endian";
}
else if (H5T_ORDER_BE == order) {
order_s = " big-endian";
}
else if (H5T_ORDER_VAX == order) {
order_s = " mixed-endian";
}
else {
order_s = " unknown-byte-order";
}
}
else {
order_s = "";
}
/* Sign */
if ((sign = H5Tget_sign(type)) >= 0) {
if (H5T_SGN_NONE == sign) {
sign_s = " unsigned";
}
else if (H5T_SGN_2 == sign) {
sign_s = "";
}
else {
sign_s = " unknown-sign";
}
}
else {
sign_s = " unknown-sign";
}
/* Print size, order, and sign on first line, precision and padding
* information on the subsequent lines */
h5tools_str_append(buffer, "%lu-bit%s%s integer", (unsigned long)(8*H5Tget_size(type)), order_s, sign_s);
print_precision(buffer, type, ind);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_float_type
*
* Purpose: Print info about a floating point data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_float_type(h5tools_str_t *buffer, hid_t type, int ind)
{
H5T_order_t order; /* byte order value */
const char *order_s=NULL; /* byte order string */
size_t spos; /* sign bit position */
size_t esize, epos; /* exponent size and position */
size_t msize, mpos; /* significand size and position */
size_t ebias; /* exponent bias */
H5T_norm_t norm; /* significand normalization */
const char *norm_s=NULL; /* normalization string */
H5T_pad_t pad; /* internal padding value */
const char *pad_s=NULL; /* internal padding string */
if (H5T_FLOAT != H5Tget_class(type))
return FALSE;
/* Byte order */
if (H5Tget_size(type) > 1) {
order = H5Tget_order(type);
if (H5T_ORDER_LE == order) {
order_s = " little-endian";
}
else if (H5T_ORDER_BE == order) {
order_s = " big-endian";
}
else if (H5T_ORDER_VAX == order) {
order_s = " mixed-endian";
}
else {
order_s = " unknown-byte-order";
}
}
else {
order_s = "";
}
/* Print size and byte order on first line, precision and padding on
* subsequent lines. */
h5tools_str_append(buffer, "%lu-bit%s floating-point", (unsigned long)(8*H5Tget_size(type)), order_s);
print_precision(buffer, type, ind);
/* Print sizes, locations, and other information about each field */
H5Tget_fields (type, &spos, &epos, &esize, &mpos, &msize);
ebias = H5Tget_ebias(type);
norm = H5Tget_norm(type);
switch (norm) {
case H5T_NORM_IMPLIED:
norm_s = ", msb implied";
break;
case H5T_NORM_MSBSET:
norm_s = ", msb always set";
break;
case H5T_NORM_NONE:
norm_s = ", no normalization";
break;
case H5T_NORM_ERROR:
norm_s = ", unknown normalization";
break;
default:
;
break;
}
h5tools_str_append(buffer, "\n%*s(significant for %lu bit%s at bit %lu%s)", ind, "",
(unsigned long)msize, 1==msize?"":"s", (unsigned long)mpos, norm_s);
h5tools_str_append(buffer, "\n%*s(exponent for %lu bit%s at bit %lu, bias is 0x%lx)",
ind, "", (unsigned long)esize, 1==esize?"":"s", (unsigned long)epos, (unsigned long)ebias);
h5tools_str_append(buffer, "\n%*s(sign bit at %lu)", ind, "", (unsigned long)spos);
/* Display internal padding */
if ((1 + esize + msize) < H5Tget_precision(type)) {
pad = H5Tget_inpad(type);
switch (pad) {
case H5T_PAD_ZERO:
pad_s = "zero";
break;
case H5T_PAD_ONE:
pad_s = "one";
break;
case H5T_PAD_BACKGROUND:
pad_s = "bkg";
break;
case H5T_PAD_ERROR:
case H5T_NPAD:
pad_s = "unknown";
break;
default:
;
break;
}
h5tools_str_append(buffer, "\n%*s(internal padding bits are %s)", ind, "", pad_s);
}
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_cmpd_type
*
* Purpose: Print info about a compound data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_cmpd_type(h5tools_str_t *buffer, hid_t type, int ind)
{
char *name = NULL; /* member name */
size_t size; /* total size of type in bytes */
hid_t subtype; /* member data type */
int nmembs; /* number of members */
int n; /* miscellaneous counters */
unsigned i; /* miscellaneous counters */
if(H5T_COMPOUND != H5Tget_class(type))
return FALSE;
if((nmembs = H5Tget_nmembers(type)) < 0)
return FALSE;
h5tools_str_append(buffer, "struct {");
for (i = 0; i < (unsigned)nmembs; i++) {
/* Name and offset */
name = H5Tget_member_name(type, i);
h5tools_str_append(buffer, "\n%*s\"", ind+4, "");
n = print_string(buffer, name, FALSE);
h5tools_str_append(buffer, "\"%*s +%-4lu ", MAX(0, 16-n), "", (unsigned long)H5Tget_member_offset(type, i));
H5free_memory(name);
/* Member's type */
subtype = H5Tget_member_type(type, i);
print_type(buffer, subtype, ind+4);
H5Tclose(subtype);
}
size = H5Tget_size(type);
h5tools_str_append(buffer, "\n%*s} %lu byte%s", ind, "", (unsigned long)size, 1==size?"":"s");
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_enum_type
*
* Purpose: Print info about an enumeration data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_enum_type(h5tools_str_t *buffer, hid_t type, int ind)
{
int nmembs; /* number of members */
hid_t super; /* enum base integer type */
if (H5T_ENUM != H5Tget_class(type))
return FALSE;
if ((nmembs = H5Tget_nmembers(type)) < 0)
return FALSE;
super = H5Tget_super(type);
h5tools_str_append(buffer, "enum ");
print_type(buffer, super, ind + 4);
h5tools_str_append(buffer, " {");
if (nmembs > 0) {
char **name; /* member names */
unsigned char *value; /* value array */
hid_t native = H5I_INVALID_HID; /* native integer data type */
size_t dst_size; /* destination value type size */
unsigned i; /* miscellaneous counters */
/* Determine what data type to use for the native values. To simplify
* things we entertain three possibilities:
* 1. long long -- the largest native signed integer
* 2. unsigned long long -- the largest native unsigned integer
* 3. raw format */
if (H5Tget_size(type) <= sizeof(long long)) {
dst_size = sizeof(long long);
if (H5T_SGN_NONE == H5Tget_sign(type))
native = H5T_NATIVE_ULLONG;
else
native = H5T_NATIVE_LLONG;
} /* end if */
else
dst_size = H5Tget_size(type);
/* Get the names and raw values of all members */
name = (char **)HDcalloc((size_t)nmembs, sizeof(char *));
value = (unsigned char *)HDcalloc((size_t)nmembs, MAX(H5Tget_size(type), dst_size));
for (i = 0; i < (unsigned)nmembs; i++) {
name[i] = H5Tget_member_name(type, i);
H5Tget_member_value(type, i, value + i * H5Tget_size(type));
}
/* Convert values to native data type */
if (native > 0)
if (H5Tconvert(super, native, (size_t)nmembs, value, NULL, H5P_DEFAULT) < 0) {
/* Release resources */
for (i = 0; i < (unsigned)nmembs; i++)
H5free_memory(name[i]);
HDfree(name);
HDfree(value);
H5Tclose(super);
return FALSE;
}
/* Sort members by increasing value */
/*not implemented yet*/
/* Print members */
for (i = 0; i < (unsigned)nmembs; i++) {
unsigned char *copy; /* a pointer to value array */
int nchars; /* number of output characters */
h5tools_str_append(buffer, "\n%*s", ind+4, "");
nchars = print_string(buffer, name[i], TRUE);
h5tools_str_append(buffer, "%*s = ", MAX(0, 16 - nchars), "");
if (native < 0) {
size_t j;
h5tools_str_append(buffer, "0x");
for (j = 0; j < dst_size; j++)
h5tools_str_append(buffer, "%02x", value[i*dst_size+j]);
}
else if (H5T_SGN_NONE == H5Tget_sign(native)) {
/*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
*strangely, unless use another pointer "copy".*/
copy = value + i * dst_size;
h5tools_str_append(buffer, HSIZE_T_FORMAT, *((unsigned long long*)((void*)copy)));
}
else {
/*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
*strangely, unless use another pointer "copy".*/
copy = value + i * dst_size;
h5tools_str_append(buffer, "%lld", *((long long*)((void*)copy)));
}
}
/* Release resources */
for(i = 0; i < (unsigned)nmembs; i++)
H5free_memory(name[i]);
HDfree(name);
HDfree(value);
}
else
h5tools_str_append(buffer, "\n%*s <empty>", ind+4, "");
h5tools_str_append(buffer, "\n%*s}", ind, "");
H5Tclose(super);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_string_type
*
* Purpose: Print information about a string data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_string_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind)
{
H5T_str_t pad;
const char *pad_s=NULL;
H5T_cset_t cset;
const char *cset_s=NULL;
if (H5T_STRING != H5Tget_class(type))
return FALSE;
/* Padding */
pad = H5Tget_strpad(type);
switch (pad) {
case H5T_STR_NULLTERM:
pad_s = "null-terminated";
break;
case H5T_STR_NULLPAD:
pad_s = "null-padded";
break;
case H5T_STR_SPACEPAD:
pad_s = "space-padded";
break;
case H5T_STR_RESERVED_3:
case H5T_STR_RESERVED_4:
case H5T_STR_RESERVED_5:
case H5T_STR_RESERVED_6:
case H5T_STR_RESERVED_7:
case H5T_STR_RESERVED_8:
case H5T_STR_RESERVED_9:
case H5T_STR_RESERVED_10:
case H5T_STR_RESERVED_11:
case H5T_STR_RESERVED_12:
case H5T_STR_RESERVED_13:
case H5T_STR_RESERVED_14:
case H5T_STR_RESERVED_15:
case H5T_STR_ERROR:
pad_s = "unknown-format";
break;
default:
;
break;
}
/* Character set */
cset = H5Tget_cset(type);
switch (cset) {
case H5T_CSET_ASCII:
cset_s = "ASCII";
break;
case H5T_CSET_UTF8:
cset_s = "UTF-8";
break;
case H5T_CSET_RESERVED_2:
case H5T_CSET_RESERVED_3:
case H5T_CSET_RESERVED_4:
case H5T_CSET_RESERVED_5:
case H5T_CSET_RESERVED_6:
case H5T_CSET_RESERVED_7:
case H5T_CSET_RESERVED_8:
case H5T_CSET_RESERVED_9:
case H5T_CSET_RESERVED_10:
case H5T_CSET_RESERVED_11:
case H5T_CSET_RESERVED_12:
case H5T_CSET_RESERVED_13:
case H5T_CSET_RESERVED_14:
case H5T_CSET_RESERVED_15:
case H5T_CSET_ERROR:
cset_s = "unknown-character-set";
break;
default:
;
break;
}
if (H5Tis_variable_str(type)) {
h5tools_str_append(buffer, "variable-length");
}
else {
h5tools_str_append(buffer, "%lu-byte", (unsigned long)H5Tget_size(type));
}
h5tools_str_append(buffer, " %s %s string", pad_s, cset_s);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_reference_type
*
* Purpose: Prints information about a reference data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_reference_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind)
{
if (H5T_REFERENCE != H5Tget_class(type))
return FALSE;
if (H5Tequal(type, H5T_STD_REF) == TRUE) {
h5tools_str_append(buffer, "standard reference");
}
else if (H5Tequal(type, H5T_STD_REF_OBJ) == TRUE) {
h5tools_str_append(buffer, "object reference");
}
else if (H5Tequal(type, H5T_STD_REF_DSETREG) == TRUE) {
h5tools_str_append(buffer, "dataset region reference");
}
else {
h5tools_str_append(buffer, "%lu-byte unknown reference", (unsigned long)H5Tget_size(type));
}
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_opaque_type
*
* Purpose: Prints information about an opaque data type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_opaque_type(h5tools_str_t *buffer, hid_t type, int ind)
{
char *tag;
size_t size;
if (H5T_OPAQUE != H5Tget_class(type))
return FALSE;
size = H5Tget_size(type);
h5tools_str_append(buffer, "%lu-byte opaque type", (unsigned long)size);
if ((tag = H5Tget_tag(type))) {
h5tools_str_append(buffer, "\n%*s(tag = \"", ind, "");
print_string(buffer, tag, FALSE);
h5tools_str_append(buffer, "\")");
H5free_memory(tag);
}
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_vlen_type
*
* Purpose: Print information about a variable-length type
*
* Return: Success: TRUE
* Failure: FALSE
*-------------------------------------------------------------------------
*/
static hbool_t
print_vlen_type(h5tools_str_t *buffer, hid_t type, int ind)
{
hid_t super;
if (H5T_VLEN != H5Tget_class(type))
return FALSE;
h5tools_str_append(buffer, "variable length of\n%*s", ind + 4, "");
super = H5Tget_super(type);
print_type(buffer, super, ind + 4);
H5Tclose(super);
return TRUE;
}
/*---------------------------------------------------------------------------
* Purpose: Print information about an array type
*
* Return: Success: TRUE
* Failure: FALSE
*---------------------------------------------------------------------------
*/
static hbool_t
print_array_type(h5tools_str_t *buffer, hid_t type, int ind)
{
hid_t super;
int ndims, i;
hsize_t *dims=NULL;
if (H5T_ARRAY != H5Tget_class(type))
return FALSE;
ndims = H5Tget_array_ndims(type);
if (ndims) {
dims = (hsize_t *)HDmalloc((unsigned)ndims * sizeof(dims[0]));
H5Tget_array_dims2(type, dims);
/* Print dimensions */
for (i = 0; i < ndims; i++)
h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT , i?",":"[", dims[i]);
h5tools_str_append(buffer, "]");
HDfree(dims);
}
else
h5tools_str_append(buffer, " [SCALAR]\n", rawoutstream);
/* Print parent type */
h5tools_str_append(buffer, " ");
super = H5Tget_super(type);
print_type(buffer, super, ind+4);
H5Tclose(super);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_bitfield_type
*
* Purpose: Print information about a bitfield type.
*
* Return: Success: TRUE
* Failure: FALSE, nothing printed
*-------------------------------------------------------------------------
*/
static hbool_t
print_bitfield_type(h5tools_str_t *buffer, hid_t type, int ind)
{
H5T_order_t order; /* byte order value */
const char *order_s = NULL; /* byte order string */
if (H5T_BITFIELD != H5Tget_class(type))
return FALSE;
if (H5Tget_size(type)>1) {
order = H5Tget_order(type);
if (H5T_ORDER_LE == order) {
order_s = " little-endian";
}
else if (H5T_ORDER_BE == order) {
order_s = " big-endian";
}
else if (H5T_ORDER_VAX == order) {
order_s = " mixed-endian";
}
else {
order_s = "unknown-byte-order";
}
}
else {
order_s = "";
}
h5tools_str_append(buffer, "%lu-bit%s bitfield", (unsigned long)(8*H5Tget_size(type)), order_s);
print_precision(buffer, type, ind);
return TRUE;
}
/*-------------------------------------------------------------------------
* Function: print_type
*
* Purpose: Prints a data type definition. The definition is printed
* without any leading space or trailing line-feed (although
* there might be line-feeds inside the type definition). The
* first line is assumed to have IND characters before it on
* the same line (printed by the caller).
* Prints the OID of shared data types.
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
print_type(h5tools_str_t *buffer, hid_t type, int ind)
{
H5T_class_t data_class = H5Tget_class(type);
/* Bad data type */
if (type < 0) {
h5tools_str_append(buffer,"<ERROR>");
return;
}
/* Shared? If so then print the type's OID */
if (H5Tcommitted(type)) {
H5O_info2_t oi;
if (H5Oget_info3(type, &oi, H5O_INFO_BASIC) >= 0) {
char *type_string = NULL;
H5Otoken_to_str(type, &oi.token, &type_string);
h5tools_str_append(buffer,"shared-%lu:%s", oi.fileno, type_string);
H5free_memory(type_string);
} /* end if */
else
h5tools_str_append(buffer,"shared ");
} /* end if */
/* Print the type */
if (print_native_type(buffer, type, ind) ||
print_ieee_type(buffer, type, ind) ||
print_cmpd_type(buffer, type, ind) ||
print_enum_type(buffer, type, ind) ||
print_string_type(buffer, type, ind) ||
print_reference_type(buffer, type, ind) ||
print_vlen_type(buffer, type, ind) ||
print_array_type(buffer, type, ind) ||
print_opaque_type(buffer, type, ind) ||
print_bitfield_type(buffer, type, ind))
return;
/* Unknown type */
h5tools_str_append(buffer,"%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), (unsigned)data_class);
}
/*
*
*/
static void
dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims)
{
hid_t new_obj_id = H5I_INVALID_HID;
hid_t new_obj_sid = H5I_INVALID_HID;
hsize_t elmt_counter = 0; /*counts the # elements printed. */
size_t ncols = 80; /* available output width */
int i;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t datactx; /* print context */
H5TOOLS_START_DEBUG("");
datactx = *ctx; /* print context */
/* Assume entire data space to be printed */
if (datactx.ndims > 0)
for (i = 0; (unsigned)i < datactx.ndims; i++)
datactx.p_min_idx[i] = 0;
datactx.need_prefix = TRUE;
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) {
H5O_type_t obj_type = -1; /* Object type */
H5R_type_t ref_type; /* Reference type */
H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos);
datactx.need_prefix = TRUE;
h5tools_str_reset(&buffer);
H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i);
h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx);
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims);
ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]);
switch (ref_type) {
case H5R_OBJECT1:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_DATASET:
if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
if(H5Dclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed");
if(H5Rdestroy(&ref_buf[i]) < 0)
H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed");
}
else
H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed");
break;
case H5O_TYPE_GROUP:
case H5O_TYPE_NAMED_DATATYPE:
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
break;
} /* end switch */
}
else
H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed");
break;
case H5R_DATASET_REGION1:
H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
if(H5Dclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed");
if(H5Rdestroy(&ref_buf[i]) < 0)
H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION1 failed");
}
else
H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
break;
case H5R_OBJECT2:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_GROUP:
break;
case H5O_TYPE_DATASET:
if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
if(H5Oclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
if(H5Rdestroy(&ref_buf[i]) < 0)
H5TOOLS_INFO("H5Rdestroy H5R_OBJECT2 failed");
}
else
H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed");
break;
case H5O_TYPE_NAMED_DATATYPE:
break;
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
break;
} /* end switch */
}
else
H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed");
break;
case H5R_DATASET_REGION2:
H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
if (info->line_ncols > 0)
ncols = info->line_ncols;
/* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
else {
if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " {");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
datactx.need_prefix = TRUE;
datactx.indent_level++;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "NULL");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
datactx.indent_level--;
datactx.need_prefix = TRUE;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "}");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
}
else {
H5S_sel_type region_type;
region_type = H5Sget_select_type(new_obj_sid);
if(region_type == H5S_SEL_POINTS) {
/* Print point information */
H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2");
h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx,
&buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
}
else if(region_type == H5S_SEL_HYPERSLABS) {
/* Print block information */
H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2");
h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx,
&buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
}
else
H5TOOLS_INFO("invalid region type");
} /* end else to if (h5tools_is_zero(... */
if(H5Sclose(new_obj_sid) < 0)
H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
}
else
H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
if(H5Dclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
if(H5Rdestroy(&ref_buf[i]) < 0)
H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION2 failed");
}
break;
case H5R_ATTR:
H5TOOLS_DEBUG("ref_type is H5R_ATTR");
if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
if(H5Aclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
if(H5Rdestroy(&ref_buf[i]) < 0)
H5TOOLS_INFO("H5Rdestroy H5R_ATTR failed");
}
else {
H5TOOLS_DEBUG("NULL H5R_ATTR");
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " {");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
datactx.need_prefix = TRUE;
datactx.indent_level++;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "NULL");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
datactx.indent_level--;
datactx.need_prefix = TRUE;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "}");
h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
}
break;
case H5R_BADTYPE:
case H5R_MAXTYPE:
default:
break;
} /* end switch */
H5TOOLS_DEBUG("finished reference loop:%d",i);
} /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */
h5tools_str_close(&buffer);
PRINTVALSTREAM(stream, "\n");
H5TOOLS_ENDDEBUG("");
}
/*-------------------------------------------------------------------------
* Function: dump_dataset_values
*
* Purpose: Prints all values of a dataset.
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
dump_dataset_values(hid_t dset)
{
hid_t f_type = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t outputformat;
h5tool_format_t *info = &ls_dataformat;
H5R_ref_t *ref_buf = NULL;
H5TOOLS_START_DEBUG("");
f_type = H5Dget_type(dset);
space = H5Dget_space(dset);
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
outputformat = *info;
outputformat.line_1st = NULL;
outputformat.idx_fmt = "";
if (simple_output_g) {
outputformat.idx_fmt = "";
outputformat.line_per_line = 1;
outputformat.line_multi_new = 0;
outputformat.line_pre = " ";
outputformat.line_cont = " ";
outputformat.arr_pre = "";
outputformat.arr_suf = "";
outputformat.arr_sep = " ";
if (!label_g) {
outputformat.cmpd_pre = "";
outputformat.cmpd_suf = "";
}
outputformat.cmpd_sep = " ";
if (label_g)
outputformat.cmpd_name = "%s=";
outputformat.elmt_suf1 = " ";
outputformat.str_locale = ESCAPE_HTML;
}
else {
if (no_line_wrap_g) {
outputformat.line_per_line = 1;
}
else {
outputformat.line_ncols = (unsigned)width_g;
}
if (label_g)
outputformat.cmpd_name = "%s=";
outputformat.line_pre = " %s ";
outputformat.line_cont = " %s ";
outputformat.str_repeat = 8;
outputformat.arr_pre = NULL;
outputformat.arr_suf = NULL;
outputformat.arr_sep = NULL;
outputformat.cmpd_pre = NULL;
outputformat.cmpd_suf = NULL;
outputformat.cmpd_sep = NULL;
outputformat.vlen_sep = NULL;
outputformat.vlen_pre = NULL;
outputformat.vlen_suf = NULL;
outputformat.vlen_end = NULL;
}
outputformat.arr_linebreak = 0;
/* Floating point types should display full precision */
HDsnprintf(fmt_float, sizeof(fmt_float), "%%1.%dg", FLT_DIG);
outputformat.fmt_float = fmt_float;
HDsnprintf(fmt_double, sizeof(fmt_double), "%%1.%dg", DBL_DIG);
outputformat.fmt_double = fmt_double;
if (hexdump_g) {
/* Print all data in hexadecimal format if the `-x' or `--hexdump'
* command line switch was given. */
outputformat.raw = TRUE;
}
else if (string_g && H5Tget_size(f_type) == 1 && (H5Tget_class(f_type) == H5T_INTEGER)) {
/* Print 1-byte integer data as an ASCI character string instead of
* integers if the `-s' or `--string' command-line option was given. */
outputformat.ascii = TRUE;
outputformat.elmt_suf1 = "";
outputformat.elmt_suf2 = "";
HDsnprintf(string_prefix, sizeof(string_prefix), "%s\"", outputformat.line_pre);
outputformat.line_pre = string_prefix;
outputformat.line_suf = "\"";
}
info = &outputformat;
ctx.indent_level = 1;
ctx.cur_column = (size_t)curr_pos;
/* Print all the values. */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " Data:\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
ctx.need_prefix = TRUE;
ctx.cur_column = (size_t)curr_pos;
if (H5Tget_class(f_type) == H5T_REFERENCE) {
H5TOOLS_DEBUG("reference class type");
if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) {
H5TOOLS_GOTO_DONE_NO_RET();
}
ndims = (int)H5Sget_simple_extent_npoints(space);
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
if (ctx.ndims > 0)
for (i = 0; i < (size_t)ctx.ndims; i++)
ctx.p_min_idx[i] = 0;
H5Sget_simple_extent_dims(space, total_size, NULL);
if (ctx.ndims > 0)
init_acc_pos(&ctx, total_size);
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
H5TOOLS_DEBUG("H5Dread reference read");
if(H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_buf) < 0) {
HDfree(ref_buf);
H5TOOLS_INFO("H5Dread reference failed");
H5TOOLS_GOTO_DONE_NO_RET();
}
dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims);
HDfree(ref_buf);
}
}
else {
if (h5tools_dump_dset(rawoutstream, info, &ctx, dset) < 0) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " Unable to print data.");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
}
}
done:
H5Sclose(space);
H5Tclose(f_type);
h5tools_str_close(&buffer);
PRINTVALSTREAM(rawoutstream, "\n");
H5TOOLS_ENDDEBUG("");
}
/*-------------------------------------------------------------------------
* Function: dump_attribute_values
*
* Purpose: Prints all values of a attribute.
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
dump_attribute_values(hid_t attr)
{
hid_t f_type = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t outputformat;
h5tool_format_t *info = &ls_dataformat;
H5R_ref_t *ref_buf = NULL;
H5TOOLS_START_DEBUG("");
f_type = H5Aget_type(attr);
space = H5Aget_space(attr);
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
outputformat = *info;
outputformat.line_1st = NULL;
outputformat.idx_fmt = "";
if (simple_output_g) {
outputformat.idx_fmt = "";
outputformat.line_per_line = 1;
outputformat.line_multi_new = 0;
outputformat.line_pre = " ";
outputformat.line_cont = " ";
outputformat.arr_pre = "";
outputformat.arr_suf = "";
outputformat.arr_sep = " ";
if (!label_g) {
outputformat.cmpd_pre = "";
outputformat.cmpd_suf = "";
}
outputformat.cmpd_sep = " ";
if (label_g)
outputformat.cmpd_name = "%s=";
outputformat.elmt_suf1 = " ";
outputformat.str_locale = ESCAPE_HTML;
}
else {
if (no_line_wrap_g) {
outputformat.line_per_line = 1;
}
else {
outputformat.line_ncols = (unsigned)width_g;
}
if (label_g)
outputformat.cmpd_name = "%s=";
outputformat.line_pre = " %s ";
outputformat.line_cont = " %s ";
outputformat.str_repeat = 8;
outputformat.arr_pre = NULL;
outputformat.arr_suf = NULL;
outputformat.arr_sep = NULL;
outputformat.cmpd_pre = NULL;
outputformat.cmpd_suf = NULL;
outputformat.cmpd_sep = NULL;
outputformat.vlen_sep = NULL;
outputformat.vlen_pre = NULL;
outputformat.vlen_suf = NULL;
outputformat.vlen_end = NULL;
}
outputformat.arr_linebreak = 0;
/* Floating point types should display full precision */
HDsnprintf(fmt_float, sizeof(fmt_float), "%%1.%dg", FLT_DIG);
outputformat.fmt_float = fmt_float;
HDsnprintf(fmt_double, sizeof(fmt_double), "%%1.%dg", DBL_DIG);
outputformat.fmt_double = fmt_double;
if (hexdump_g) {
/* Print all data in hexadecimal format if the `-x' or `--hexdump'
* command line switch was given. */
outputformat.raw = TRUE;
}
else if (string_g && H5Tget_size(f_type) == 1 && (H5Tget_class(f_type) == H5T_INTEGER)) {
/* Print 1-byte integer data as an ASCI character string instead of
* integers if the `-s' or `--string' command-line option was given. */
outputformat.ascii = TRUE;
outputformat.elmt_suf1 = "";
outputformat.elmt_suf2 = "";
HDsnprintf(string_prefix, sizeof(string_prefix), "%s\"", outputformat.line_pre);
outputformat.line_pre = string_prefix;
outputformat.line_suf = "\"";
}
info = &outputformat;
ctx.indent_level = 2;
ctx.cur_column = (size_t)curr_pos;
/* Print all the values. */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " Data:\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
ctx.need_prefix = TRUE;
ctx.cur_column = (size_t)curr_pos;
if (H5Tget_class(f_type) == H5T_REFERENCE) {
H5TOOLS_DEBUG("reference class type");
if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) {
H5TOOLS_GOTO_DONE_NO_RET();
}
ndims = (int)H5Sget_simple_extent_npoints(space);
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
if (ctx.ndims > 0)
for (i = 0; i < (size_t)ctx.ndims; i++)
ctx.p_min_idx[i] = 0;
H5Sget_simple_extent_dims(space, total_size, NULL);
if (ctx.ndims > 0)
init_acc_pos(&ctx, total_size);
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
H5TOOLS_DEBUG("H5Aread reference read");
if(H5Aread(attr, H5T_STD_REF, ref_buf) < 0) {
HDfree(ref_buf);
H5TOOLS_INFO("H5Aread reference failed");
H5TOOLS_GOTO_DONE_NO_RET();
}
ctx.indent_level++;
dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims);
ctx.indent_level--;
HDfree(ref_buf);
}
}
else {
H5TOOLS_DEBUG("Attribute data read");
ctx.indent_level++;
if (h5tools_dump_mem(rawoutstream, info, &ctx, attr) < 0) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " Unable to print data.");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
}
ctx.indent_level--;
H5TOOLS_DEBUG("Attribute data read complete");
}
done:
H5Sclose(space);
H5Tclose(f_type);
h5tools_str_close(&buffer);
PRINTVALSTREAM(rawoutstream, "\n");
H5TOOLS_ENDDEBUG("");
}
/*-------------------------------------------------------------------------
* Function: list_attr
*
* Purpose: Prints information about attributes.
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo,
void H5_ATTR_UNUSED *op_data)
{
hid_t attr = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t type = H5I_INVALID_HID;
hsize_t size[H5S_MAX_RANK];
hsize_t nelmts = 1;
int ndims;
int i;
H5S_class_t space_type;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
H5TOOLS_START_DEBUG("");
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
ctx.indent_level = 2;
ctx.cur_column = (size_t)curr_pos;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " Attribute: ");
print_string(&buffer, attr_name, TRUE);
H5TOOLS_DEBUG("Attribute name:%s", attr_name);
if ((attr = H5Aopen(obj, attr_name, H5P_DEFAULT)) >= 0) {
space = H5Aget_space(attr);
type = H5Aget_type(attr);
/* Data space */
ndims = H5Sget_simple_extent_dims(space, size, NULL);
space_type = H5Sget_simple_extent_type(space);
H5TOOLS_DEBUG("Attribute ndims:%d", ndims);
switch(space_type) {
case H5S_SCALAR:
/* scalar dataspace */
h5tools_str_append(&buffer, " scalar\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
break;
case H5S_SIMPLE:
/* simple dataspace */
h5tools_str_append(&buffer, " {");
for (i = 0; i < ndims; i++) {
h5tools_str_append(&buffer, "%s" HSIZE_T_FORMAT, i?", ":"", size[i]);
nelmts *= size[i];
}
h5tools_str_append(&buffer, "}\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
break;
case H5S_NULL:
/* null dataspace */
h5tools_str_append(&buffer, " null\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
break;
case H5S_NO_CLASS:
default:
/* Unknown dataspace type */
h5tools_str_append(&buffer, " unknown\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
break;
} /* end switch */
/* Data type */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s ", "Type:");
print_type(&buffer, type, 15);
h5tools_str_append(&buffer, "\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
H5Sclose(space);
H5Tclose(type);
h5tools_str_close(&buffer);
if (data_g)
dump_attribute_values(attr);
H5Aclose(attr);
}
else {
H5TOOLS_DEBUG("Attribute open failed");
h5tools_str_close(&buffer);
}
H5TOOLS_ENDDEBUG("");
return 0;
}
/*-------------------------------------------------------------------------
* Function: dataset_list1
*
* Purpose: List information about a dataset which should appear on the
* same line as the dataset name. This information will precede
* information which is applicable to all objects which will be
* printed by the caller.
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
dataset_list1(hid_t dset)
{
hsize_t cur_size[H5S_MAX_RANK]; /* current dataset dimensions */
hsize_t max_size[H5S_MAX_RANK]; /* maximum dataset dimensions */
hid_t space; /* data space */
int ndims; /* dimensionality */
H5S_class_t space_type; /* type of dataspace */
int i;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
/* Information that goes on the same row as the name. The name has
* already been printed. */
space = H5Dget_space(dset);
space_type = H5Sget_simple_extent_type(space);
ndims = H5Sget_simple_extent_dims(space, cur_size, max_size);
h5tools_str_append(&buffer, " {");
for (i = 0; i < ndims; i++) {
h5tools_str_append(&buffer, "%s"HSIZE_T_FORMAT, i?", ":"", cur_size[i]);
if (max_size[i]==H5S_UNLIMITED) {
h5tools_str_append(&buffer, "/%s", "Inf");
}
else if (max_size[i] != cur_size[i] || verbose_g > 0) {
h5tools_str_append(&buffer, "/"HSIZE_T_FORMAT, max_size[i]);
}
}
if (space_type == H5S_SCALAR)
h5tools_str_append(&buffer, "SCALAR");
else if (space_type == H5S_NULL)
h5tools_str_append(&buffer, "NULL");
h5tools_str_append(&buffer, "}");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
H5Sclose (space);
h5tools_str_close(&buffer);
return 0;
}
/*-------------------------------------------------------------------------
* Function: dataset_list2
*
* Purpose: List information about a dataset which should appear after
* information which is general to all objects.
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name)
{
hid_t dcpl; /* dataset creation property list */
hid_t type; /* data type of dataset */
hid_t space; /* data space of dataset */
int nf; /* number of filters */
unsigned filt_flags; /* filter flags */
H5Z_filter_t filt_id; /* filter identification number */
unsigned cd_values[20]; /* filter client data values */
size_t cd_nelmts; /* filter client number of values */
size_t cd_num; /* filter client data counter */
char f_name[256]; /* filter/file name */
char s[64]; /* temporary string buffer */
off_t f_offset; /* offset in external file */
hsize_t f_size; /* bytes used in external file */
hsize_t total, used; /* total size or offset */
int ndims; /* dimensionality */
int n, max_len; /* max extern file name length */
double utilization; /* percent utilization of storage */
H5T_class_t tclass; /* datatype class identifier */
int i;
H5D_layout_t stl;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
if (verbose_g > 0) {
dcpl = H5Dget_create_plist(dset);
space = H5Dget_space(dset);
type = H5Dget_type(dset);
stl = H5Pget_layout(dcpl);
switch (stl) {
case H5D_CHUNKED:
{
hsize_t chsize[64]; /* chunk size in elements */
ndims = H5Pget_chunk(dcpl, (int)NELMTS(chsize), chsize/*out*/);
h5tools_str_append(&buffer, " %-10s {", "Chunks:");
total = H5Tget_size(type);
for (i = 0; i < ndims; i++) {
h5tools_str_append(&buffer, "%s"HSIZE_T_FORMAT, i?", ":"", chsize[i]);
total *= chsize[i];
}
h5tools_str_append(&buffer, "} "HSIZE_T_FORMAT" bytes\n", total);
}
break;
case H5D_COMPACT:
break;
case H5D_CONTIGUOUS:
/* Print information about external storage */
if ((nf = H5Pget_external_count(dcpl)) > 0) {
for (i = 0, max_len = 0; i < nf; i++) {
if (H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, NULL, NULL) < 0)
continue;
n = print_string(NULL, f_name, TRUE);
max_len = MAX(max_len, n);
} /* end for */
h5tools_str_append(&buffer, " %-10s %d external file%s\n", "Extern:", nf, 1==nf?"":"s");
h5tools_str_append(&buffer, " %4s %10s %10s %10s %s\n", "ID", "DSet-Addr", "File-Addr", "Bytes", "File");
h5tools_str_append(&buffer, " %4s %10s %10s %10s ", "----", "----------", "----------", "----------");
for (i = 0; i < max_len; i++)
h5tools_str_append(&buffer, "-");
h5tools_str_append(&buffer, "\n");
for (i = 0, total=0; i < nf; i++) {
if (H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, &f_offset, &f_size)<0) {
h5tools_str_append(&buffer, " #%03d %10"H5_PRINTF_LL_WIDTH"u %10s %10s ***ERROR*** %s\n",
i, total, "", "", i+1<nf?"Following addresses are incorrect":"");
}
else if (H5S_UNLIMITED == f_size) {
h5tools_str_append(&buffer, " #%03d %10"H5_PRINTF_LL_WIDTH"u %10"H5_PRINTF_LL_WIDTH"u %10s ",
i, total, (hsize_t)f_offset, "INF");
print_string(&buffer, f_name, TRUE);
}
else {
h5tools_str_append(&buffer, " #%03d %10" PRIuHSIZE " %10" PRIuHSIZE " %10" PRIuHSIZE " ",
i, total, (hsize_t)f_offset, f_size);
print_string(&buffer, f_name, TRUE);
}
h5tools_str_append(&buffer, "\n");
total += f_size;
}
h5tools_str_append(&buffer, " %4s %10s %10s %10s ", "----", "----------", "----------", "----------");
for (i = 0; i < max_len; i++)
h5tools_str_append(&buffer, "-");
h5tools_str_append(&buffer, "\n");
} /* end if */
break;
case H5D_VIRTUAL:
{
char dset_name[256]; /* Dataset name */
size_t vmaps;
H5Pget_virtual_count(dcpl, &vmaps);
if (vmaps) {
size_t next;
h5tools_str_append(&buffer, " %-10s {%ld} Source {\n", "Maps:", vmaps);
for (next = 0; next < (unsigned) vmaps; next++) {
H5Pget_virtual_filename(dcpl, next, f_name, sizeof(f_name));
H5Pget_virtual_dsetname(dcpl, next, dset_name, sizeof(dset_name));
h5tools_str_append(&buffer, " %-10s ", " ");
print_string(&buffer, f_name, TRUE);
h5tools_str_append(&buffer, " ");
print_string(&buffer, dset_name, TRUE);
h5tools_str_append(&buffer, "\n");
}
h5tools_str_append(&buffer, " %-10s}\n", " ");
}
}
break;
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
h5tools_str_append(&buffer, "layout information not available");
break;
}
/* Print total raw storage size */
total = (hsize_t)H5Sget_simple_extent_npoints(space) * H5Tget_size(type);
used = H5Dget_storage_size(dset);
tclass = H5Tget_class(type);
h5tools_str_append(&buffer, " %-10s ", "Storage:");
switch (tclass) {
case H5T_VLEN:
h5tools_str_append(&buffer, "information not available");
break;
case H5T_REFERENCE:
if (H5Tequal(dset, H5T_STD_REF)) {
h5tools_str_append(&buffer, "reference information not available");
}
else if (H5Tequal(dset, H5T_STD_REF_DSETREG)) {
h5tools_str_append(&buffer, "information not available");
}
break;
case H5T_NO_CLASS:
case H5T_INTEGER:
case H5T_FLOAT:
case H5T_TIME:
case H5T_STRING:
case H5T_BITFIELD:
case H5T_OPAQUE:
case H5T_COMPOUND:
case H5T_ENUM:
case H5T_ARRAY:
case H5T_NCLASSES:
default:
h5tools_str_append(&buffer, HSIZE_T_FORMAT" logical byte%s, "HSIZE_T_FORMAT" allocated byte%s", total, 1==total?"":"s", used, 1==used?"":"s");
if (used > 0) {
utilization = ((double)total * (double)100.0f) / (double)used;
h5tools_str_append(&buffer, ", %1.2f%% utilization", utilization);
}
}
h5tools_str_append(&buffer, "\n");
/* Print information about raw data filters */
if ((nf = H5Pget_nfilters(dcpl)) > 0) {
for (i = 0; i < nf; i++) {
cd_nelmts = NELMTS(cd_values);
filt_id = H5Pget_filter2(dcpl, (unsigned)i, &filt_flags, &cd_nelmts, cd_values, sizeof(f_name), f_name, NULL);
f_name[sizeof(f_name) - 1] = '\0';
HDsnprintf(s, sizeof(s), "Filter-%d:", i);
h5tools_str_append(&buffer, " %-10s %s-%u %s {", s, (f_name[0] ? f_name : "method"), (unsigned)filt_id, ((filt_flags & H5Z_FLAG_OPTIONAL) ? "OPT" : ""));
for (cd_num = 0; cd_num < cd_nelmts; cd_num++)
h5tools_str_append(&buffer, "%s%u", (cd_num ? ", " : ""), cd_values[cd_num]);
h5tools_str_append(&buffer, "}\n");
} /* end for */
} /* end if */
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Print data type */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s ", "Type:");
print_type(&buffer, type, 15);
h5tools_str_append(&buffer, "\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Print address information */
if (address_g)
H5Ddebug(dset);
/* Close stuff */
H5Tclose(type);
H5Sclose(space);
H5Pclose(dcpl);
} /* end if */
h5tools_str_close(&buffer);
if (data_g)
dump_dataset_values(dset);
return 0;
} /* end dataset_list2() */
/*-------------------------------------------------------------------------
* Function: datatype_list2
*
* Purpose: List information about a datatype which should appear after
* information which is general to all objects.
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
datatype_list2(hid_t type, const char H5_ATTR_UNUSED *name)
{
if (verbose_g > 0) {
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s ", "Type:");
print_type(&buffer, type, 15);
h5tools_str_append(&buffer, "\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
h5tools_str_close(&buffer);
}
return 0;
}
/*-------------------------------------------------------------------------
* Function: list_obj
*
* Purpose: Prints information about an object
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, void *_iter)
{
H5O_type_t obj_type = oinfo->type; /* Type of the object */
iter_t *iter = (iter_t*)_iter;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
H5TOOLS_START_DEBUG("");
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
H5TOOLS_DEBUG("Object name:%s", name);
/* Print the link's name, either full name or base name */
if (!iter->symlink_target)
print_obj_name(&buffer, iter, name, "");
/* Check object information */
if (oinfo->type < 0 || oinfo->type >= H5O_TYPE_NTYPES) {
h5tools_str_append(&buffer, "Unknown type(%d)", (int)oinfo->type);
obj_type = H5O_TYPE_UNKNOWN;
}
if (iter->symlink_target)
h5tools_str_append(&buffer, "{");
if (obj_type >= 0 && dispatch_g[obj_type].name)
h5tools_str_append(&buffer, "%s", dispatch_g[obj_type].name);
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Check if we've seen this object before */
if (first_seen) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, ", same as ");
print_string(&buffer, first_seen, TRUE);
if (!iter->symlink_target) {
h5tools_str_append(&buffer, "\n");
}
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
} /* end if */
else {
hid_t obj_id = H5I_INVALID_HID; /* ID of object opened */
/* Open the object. Not all objects can be opened. If this is the case
* then return right away.
*/
H5TOOLS_DEBUG("Open object name=%s", name);
if (obj_type >= 0 && (obj_id = H5Oopen(iter->fid, name, H5P_DEFAULT)) < 0) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " *ERROR*\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
goto done;
} /* end if */
/* List the first line of information for the object. */
H5TOOLS_DEBUG("Object type:%d", obj_type);
if (obj_type >= 0 && dispatch_g[obj_type].list1)
(dispatch_g[obj_type].list1)(obj_id);
if (!iter->symlink_target || (verbose_g > 0)) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
}
/* Show detailed information about the object, beginning with information
* which is common to all objects. */
if (verbose_g > 0) {
size_t buf_size = 0;
char* comment = NULL;
char* obj_tok_str = NULL;
ssize_t cmt_bufsize = -1;
hbool_t supported = FALSE;
/* Display attributes */
H5TOOLS_DEBUG("Display attributes");
if (obj_type >= 0)
H5Aiterate2(obj_id, H5_INDEX_NAME, H5_ITER_INC, NULL, list_attr, NULL);
/* Object location & reference count */
H5Otoken_to_str(obj_id, &oinfo->token, &obj_tok_str);
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s %lu:%s\n", "Location:", oinfo->fileno, obj_tok_str);
h5tools_str_append(&buffer, " %-10s %u\n", "Links:", (unsigned)oinfo->rc);
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
H5free_memory(obj_tok_str);
/* Modification time */
if (oinfo->mtime > 0) {
char buf[256];
struct tm *tm;
if(simple_output_g)
tm = HDgmtime(&(oinfo->mtime));
else
tm = HDlocaltime(&(oinfo->mtime));
if (tm) {
HDstrftime(buf, sizeof(buf), "%Y-%m-%d %H:%M:%S %Z", tm);
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s %s\n", "Modified:", buf);
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
} /* end if */
} /* end if */
/* Only emit comments if the VOL connector supports that */
H5VLquery_optional(obj_id, H5VL_SUBCLS_OBJECT, H5VL_NATIVE_OBJECT_GET_COMMENT, &supported);
if (supported) {
/* Object comment */
cmt_bufsize = H5Oget_comment(obj_id, comment, buf_size);
/* if the actual length of the comment is longer than cmt_bufsize, then call
* H5Oget_comment again with the correct value.
*/
if (cmt_bufsize > 0) {
comment = (char *)HDmalloc((size_t)cmt_bufsize + 1); /* new_size including null terminator */
if (comment) {
cmt_bufsize = H5Oget_comment(obj_id, comment, (size_t)cmt_bufsize);
if (cmt_bufsize > 0) {
comment[cmt_bufsize] = 0;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " %-10s \"", "Comment:");
print_string(&buffer, comment, FALSE);
h5tools_str_append(&buffer, "\"\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
} /* end if */
HDfree(comment);
}
}
}
} /* end if */
/* Detailed list for object */
if (obj_type >= 0 && dispatch_g[obj_type].list2)
(dispatch_g[obj_type].list2)(obj_id, name);
/* Close the object. */
if (obj_type >= 0)
H5Oclose(obj_id);
} /* end else */
done:
if (iter->symlink_target) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "}\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
iter->symlink_target = FALSE;
}
h5tools_str_close(&buffer);
H5TOOLS_ENDDEBUG("");
return 0;
} /* end list_obj() */
/*-------------------------------------------------------------------------
* Function: list_lnk
*
* Purpose: Prints information about a link
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
list_lnk(const char *name, const H5L_info2_t *linfo, void *_iter)
{
char *buf = NULL;
iter_t *iter = (iter_t*)_iter;
int ret;
hsize_t curr_pos = 0; /* total data element position */
h5tool_link_info_t lnk_info;
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
/* init linkinfo struct */
HDmemset(&lnk_info, 0, sizeof(h5tool_link_info_t));
/* if verbose, make H5tools_get_symlink_info() display more */
if (verbose_g)
lnk_info.opt.msg_mode=1;
/* Print the link's name, either full name or base name */
print_obj_name(&buffer, iter, name, "");
switch(linfo->type) {
case H5L_TYPE_SOFT:
ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_symlink_g);
/* lnk_info.trg_path is malloced in H5tools_get_symlink_info()
* so it will be freed via buf later */
buf = (char*)lnk_info.trg_path;
/* error */
if (ret < 0)
goto done;
/* no dangling link option given and detect dangling link */
else if (no_dangling_link_g && ret == 0)
iter->symlink_list->dangle_link = TRUE;
h5tools_str_append(&buffer, "Soft Link {");
h5tools_str_append(&buffer, buf);
h5tools_str_append(&buffer, "}");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
if (follow_symlink_g) {
hbool_t orig_grp_literal = grp_literal_g;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " ");
/* Check if we have already seen this softlink */
if (symlink_is_visited(iter->symlink_list, linfo->type, NULL, buf)) {
h5tools_str_append(&buffer, "{Already Visited}\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
goto done;
}
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Add this link to the list of seen softlinks */
if (symlink_visit_add(iter->symlink_list, linfo->type, NULL, buf) < 0)
goto done;
/* Adjust user data to specify that we are operating on the
* target of an soft link */
iter->symlink_target = TRUE;
/* Prevent recursive listing of soft link target if
* recursive_g is off */
if (!recursive_g)
grp_literal_g = TRUE;
/* Recurse through the soft link */
if (visit_obj(iter->fid, name, iter) < 0) {
grp_literal_g = orig_grp_literal;
goto done;
}
grp_literal_g = orig_grp_literal;
}
else {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
}
break;
case H5L_TYPE_EXTERNAL:
{
const char *filename;
const char *path;
hbool_t follow_link = follow_symlink_g || follow_elink_g;
ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_link);
/* lnk_info.trg_path is malloced in H5tools_get_symlink_info()
* so it will be freed via buf later */
buf = (char*)lnk_info.trg_path;
/* error */
if (ret < 0)
goto done;
/* no dangling link option given and detect dangling link */
else if (no_dangling_link_g && ret == 0)
iter->symlink_list->dangle_link = TRUE;
if (H5Lunpack_elink_val(buf, linfo->u.val_size, NULL, &filename, &path) < 0)
goto done;
h5tools_str_append(&buffer, "External Link {");
h5tools_str_append(&buffer, filename);
h5tools_str_append(&buffer, "/");
if(*path != '/')
h5tools_str_append(&buffer, "/");
h5tools_str_append(&buffer, path);
h5tools_str_append(&buffer, "}");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Recurse through the external link */
/* keep the follow_elink_g for backward compatibility with -E */
if (follow_link) {
hbool_t orig_grp_literal = grp_literal_g;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " ");
/* Check if we have already seen this elink */
if (symlink_is_visited(iter->symlink_list, linfo->type, filename, path)) {
h5tools_str_append(&buffer, "{Already Visited}\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
goto done;
}
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
/* Add this link to the list of seen elinks */
if (symlink_visit_add(iter->symlink_list, linfo->type, filename, path) < 0) {
goto done;
}
/* Adjust user data to specify that we are operating on the
* target of an external link */
iter->symlink_target = TRUE;
/* Prevent recursive listing of external link target if
* recursive_g is off */
if (!recursive_g)
grp_literal_g = TRUE;
/* Recurse through the external link */
if (visit_obj(iter->fid, name, iter) < 0) {
grp_literal_g = orig_grp_literal;
goto done;
}
grp_literal_g = orig_grp_literal;
}
else
PRINTVALSTREAM(rawoutstream, "\n");
}
break;
case H5L_TYPE_ERROR:
case H5L_TYPE_HARD:
case H5L_TYPE_MAX:
default:
h5tools_str_append(&buffer, "UD Link {cannot follow UD links}\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
break;
} /* end switch */
done:
h5tools_str_close(&buffer);
if (buf)
HDfree(buf);
return 0;
} /* end list_lnk() */
/*-------------------------------------------------------------------------
* Function: visit_obj
*
* Purpose: Begins iteration on an object
*
* Return: Success: 0
* Failure: -1
*-------------------------------------------------------------------------
*/
static herr_t
visit_obj(hid_t file, const char *oname, iter_t *iter)
{
int retval = 0;
H5O_info2_t oi; /* Information for object */
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
/* Retrieve info for object to list */
if (H5Oget_info_by_name3(file, oname, &oi, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) {
if (iter->symlink_target) {
h5tools_str_append(&buffer, "{**NOT FOUND**}\n");
iter->symlink_target = FALSE;
}
else
print_obj_name(&buffer, iter, oname, "**NOT FOUND**");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
retval = -1;
goto done;
} /* end if */
/* Check for group iteration */
if (H5O_TYPE_GROUP == oi.type && !grp_literal_g) {
/* Get ID for group */
if (!iter->symlink_target && (iter->gid = H5Gopen2(file, oname, H5P_DEFAULT)) < 0) {
h5tools_str_append(&buffer, "%s: unable to open '%s' as group\n", iter->fname, oname);
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
goto done; /* Previously "continue", when this code was in main().
* We don't "continue" here in order to close the file
* and free the file name properly. */
} /* end if */
/* Delay specifying the name start point so the original object name is
* displayed if it is a link or non-group object */
iter->name_start = iter->base_len;
/* Specified name is a group. List the complete contents of the group. */
h5trav_visit(file, oname, (hbool_t) (display_root_g || iter->symlink_target), recursive_g, list_obj, list_lnk, iter, H5O_INFO_BASIC|H5O_INFO_TIME);
/* Close group */
if (!iter->symlink_target)
H5Gclose(iter->gid);
} /* end if */
else {
/* Use file ID for root group ID */
iter->gid = file;
/* Specified name is a non-group object -- list that object */
list_obj(oname, &oi, NULL, iter);
} /* end else */
done:
h5tools_str_close(&buffer);
return retval;
}
/*-------------------------------------------------------------------------
* Function: get_width
*
* Purpose: Figure out how wide the screen is. This is highly
* unportable, but the user can always override the width we
* detect by giving a command-line option. These code snippets
* were borrowed from the GNU less(1).
*
* Return: Success: Number of columns.
* Failure: Some default number of columms.
*-------------------------------------------------------------------------
*/
static int
get_width(void)
{
int width = 80; /*the default */
char *s;
/* Try to get it from the COLUMNS environment variable first since it's
* value is sometimes wrong. */
if ((s = HDgetenv("COLUMNS")) && *s && isdigit((int)*s))
width = (int)HDstrtol(s, NULL, 0);
#if defined(H5_HAVE_STRUCT_VIDEOCONFIG) && defined(H5_HAVE__GETVIDEOCONFIG)
{
/* Microsoft C */
struct videoconfig w;
_getvideoconfig(&w);
width = w.numtextcols;
}
#elif defined(H5_HAVE_STRUCT_TEXT_INFO) && defined(H5_HAVE_GETTEXTINFO)
{
/* Borland C or DJGPPC */
struct text_info w;
gettextinfo(&w);
width = w.screenwidth;
}
#elif defined(H5_HAVE_GETCONSOLESCREENBUFFERINFO)
{
/* Win32 C */
CONSOLE_SCREEN_BUFFER_INFO scr;
GetConsoleScreenBufferInfo(GetStdHandle(STD_OUTPUT_HANDLE), &scr);
width = scr.srWindow.Right - scr.srWindow.Left + 1;
}
#elif defined(H5_HAVE__SCRSIZE)
{
/* OS/2 */
int w[2];
_scrsize(w);
width = w[0];
}
#elif defined(H5_HAVE_TIOCGWINSZ) && defined(H5_HAVE_IOCTL)
{
/* Unix with ioctl(TIOCGWINSZ) */
struct winsize w;
if (ioctl(2, (int)TIOCGWINSZ, &w)>=0 && w.ws_col>0)
width = w.ws_col;
}
#elif defined(H5_HAVE_TIOCGETD) && defined(H5_HAVE_IOCTL)
{
/* Unix with ioctl(TIOCGETD) */
struct uwdata w;
if (ioctl(2, WIOCGETD, &w)>=0 && w.uw_width>0)
width = w.uw_width / w.uw_hs;
}
#endif
/* Set to at least 1 */
if (width < 1)
width = 1;
return width;
}
/*-------------------------------------------------------------------------
* Function: is_valid_args
*
* Purpose: check if command line arguments are valid
*
* Return: Success: TRUE (1)
* Failure: FALSE (0)
*-------------------------------------------------------------------------*/
static hbool_t
is_valid_args(void)
{
hbool_t ret = TRUE;
if (recursive_g && grp_literal_g) {
HDfprintf(rawerrorstream, "Error: 'recursive' option not compatible with 'group info' option!\n\n");
ret = FALSE;
goto out;
}
if (no_dangling_link_g && !follow_symlink_g) {
HDfprintf(rawerrorstream, "Error: --no-dangling-links must be used along with --follow-symlinks option!\n\n");
ret = FALSE;
goto out;
}
out:
return ret;
}
/*-------------------------------------------------------------------------
* Function: leave
*
* Purpose: Close HDF5 and MPI and call exit()
*
* Return: Does not return
*-------------------------------------------------------------------------
*/
static void
leave(int ret)
{
h5tools_close();
HDexit(ret);
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Opens a file and lists the specified group
*
* Return: Success: 0
* Failure: 1
*-------------------------------------------------------------------------
*/
int
main(int argc, const char *argv[])
{
hid_t file_id = H5I_INVALID_HID;
char *fname = NULL, *oname = NULL, *x;
const char *s = NULL;
char *rest;
int argno;
static char root_name[] = "/";
char drivername[50];
const char *preferred_driver = NULL;
int err_exit = 0;
hid_t fapl_id = H5P_DEFAULT;
H5E_auto2_t func;
H5E_auto2_t tools_func;
void *edata;
void *tools_edata;
hbool_t custom_vol_fapl = FALSE;
h5tools_vol_info_t vol_info;
#ifdef H5_HAVE_ROS3_VFD
/* Default "anonymous" S3 configuration */
H5FD_ros3_fapl_t ros3_fa = {
1, /* Structure Version */
false, /* Authenticate? */
"", /* AWS Region */
"", /* Access Key ID */
"", /* Secret Access Key */
};
#endif /* H5_HAVE_ROS3_VFD */
#ifdef H5_HAVE_LIBHDFS
/* "Default" HDFS configuration */
H5FD_hdfs_fapl_t hdfs_fa = {
1, /* Structure Version */
"localhost", /* Namenode Name */
0, /* Namenode Port */
"", /* Kerberos ticket cache */
"", /* User name */
2048, /* Stream buffer size */
};
#endif /* H5_HAVE_LIBHDFS */
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Disable error reporting */
H5Eget_auto2(H5E_DEFAULT, &func, &edata);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
/* Initialize h5tools lib */
h5tools_init();
/* Disable tools error reporting */
H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
/* Initialize fapl info struct */
HDmemset(&vol_info, 0, sizeof(h5tools_vol_info_t));
/* Build object display table */
DISPATCH(H5O_TYPE_GROUP, "Group", NULL, NULL);
DISPATCH(H5O_TYPE_DATASET, "Dataset", dataset_list1, dataset_list2);
DISPATCH(H5O_TYPE_NAMED_DATATYPE, "Type", NULL, datatype_list2);
/* Default output width */
width_g = get_width();
/* Switches come before non-switch arguments */
for (argno = 1; argno < argc && '-' == argv[argno][0]; argno++) {
if (!HDstrcmp(argv[argno], "--")) {
/* Last switch */
argno++;
break;
}
else if (!HDstrcmp(argv[argno], "--help")) {
usage();
leave(EXIT_SUCCESS);
}
else if (!HDstrcmp(argv[argno], "--address")) {
address_g = TRUE;
}
else if(!HDstrcmp(argv[argno], "--data")) {
data_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--enable-error-stack")) {
enable_error_stack = 1;
/* deprecated --errors */
}
else if (!HDstrcmp(argv[argno], "--errors")) {
enable_error_stack = 1;
}
else if (!HDstrcmp(argv[argno], "--follow-symlinks")) {
follow_symlink_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--no-dangling-links")) {
no_dangling_link_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--external")) {
follow_elink_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--full")) {
fullname_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--group")) {
grp_literal_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--label")) {
label_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--recursive")) {
recursive_g = TRUE;
fullname_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--simple")) {
simple_output_g = TRUE;
}
else if (!HDstrcmp(argv[argno], "--string")) {
string_g = TRUE;
}
else if (!HDstrncmp(argv[argno], "--vfd=", (size_t)6)) {
preferred_driver = argv[argno]+6;
}
else if (!HDstrncmp(argv[argno], "--vol-value=", (size_t)12)) {
vol_info.type = VOL_BY_VALUE;
vol_info.u.value = (H5VL_class_value_t)HDatoi(argv[argno]+12);
custom_vol_fapl = TRUE;
}
else if (!HDstrncmp(argv[argno], "--vol-name=", (size_t)11)) {
vol_info.type = VOL_BY_NAME;
vol_info.u.name = argv[argno]+11;
custom_vol_fapl = TRUE;
}
else if (!HDstrncmp(argv[argno], "--vol-info=", (size_t)11)) {
vol_info.info_string = argv[argno]+11;
}
else if (!HDstrncmp(argv[argno], "--width=", (size_t)8)) {
width_g = (int)HDstrtol(argv[argno]+8, &rest, 0);
if (0 == width_g)
no_line_wrap_g = TRUE;
else if (width_g < 0 || *rest) {
usage();
leave(EXIT_FAILURE);
}
}
else if (!HDstrcmp(argv[argno], "--width")) {
if ((argno + 1) >= argc) {
usage();
leave(EXIT_FAILURE);
}
else {
s = argv[++argno];
}
width_g = (int)HDstrtol(s, &rest, 0);
if (width_g <= 0 || *rest) {
usage();
leave(EXIT_FAILURE);
}
}
else if (!HDstrcmp(argv[argno], "--verbose")) {
verbose_g++;
}
else if (!HDstrcmp(argv[argno], "--version")) {
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
}
else if (!HDstrcmp(argv[argno], "--hexdump")) {
hexdump_g = TRUE;
}
else if (!HDstrncmp(argv[argno], "-w", (size_t)2)) {
if (argv[argno][2]) {
s = argv[argno] + 2;
}
else if ((argno + 1) >= argc) {
usage();
leave(EXIT_FAILURE);
}
else {
s = argv[++argno];
}
width_g = (int)HDstrtol(s, &rest, 0);
if(0 == width_g) {
no_line_wrap_g = TRUE;
}
else if(width_g < 0 || *rest) {
usage();
leave(EXIT_FAILURE);
}
}
else if (!HDstrncmp(argv[argno], "--s3-cred=", (size_t)10)) {
#ifdef H5_HAVE_ROS3_VFD
char const *start = NULL;
start = strchr(argv[argno], '=');
if (start == NULL) {
HDfprintf(rawerrorstream, "Error: Unable to parse null credentials tuple\n"
" For anonymous access, omit \"--s3-cred\" and use only \"--vfd=ros3\"\n\n");
usage();
leave(EXIT_FAILURE);
}
start++;
if (h5tools_parse_ros3_fapl_tuple(start, ',', &ros3_fa) < 0) {
HDfprintf(rawerrorstream, "Error: failed to parse S3 VFD credential info\n\n");
usage();
leave(EXIT_FAILURE);
}
#else
HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
usage();
leave(EXIT_FAILURE);
#endif
}
else if (!HDstrncmp(argv[argno], "--hdfs-attrs=", (size_t)13)) {
#ifdef H5_HAVE_LIBHDFS
char const *start = NULL;
start = argv[argno]+13; /* should never segfault: worst case of */
if (*start != '(') { /* null-termintor after '='. */
usage();
leave(EXIT_FAILURE);
}
if (h5tools_parse_hdfs_fapl_tuple(start, ',', &hdfs_fa) < 0) {
HDfprintf(rawerrorstream, "Error: failed to parse HDFS VFD configuration info\n\n");
usage();
leave(EXIT_FAILURE);
}
#else
HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
usage();
leave(EXIT_FAILURE);
#endif
}
else if('-'!=argv[argno][1]) {
/* Single-letter switches */
for(s = argv[argno] + 1; *s; s++) {
switch(*s) {
case '?':
case 'h': /* --help */
usage();
leave(EXIT_SUCCESS);
break;
case 'a': /* --address */
address_g = TRUE;
break;
case 'd': /* --data */
data_g = TRUE;
break;
/* deprecated -e */
case 'e': /* --errors */
enable_error_stack = 1;
break;
case 'E': /* --external */
follow_elink_g = TRUE;
break;
case 'f': /* --full */
fullname_g = TRUE;
break;
case 'g': /* --group */
grp_literal_g = TRUE;
break;
case 'l': /* --label */
label_g = TRUE;
break;
case 'r': /* --recursive */
recursive_g = TRUE;
fullname_g = TRUE;
break;
case 'S': /* --simple */
simple_output_g = TRUE;
break;
case 's': /* --string */
string_g = TRUE;
break;
case 'v': /* --verbose */
verbose_g++;
break;
case 'V': /* --version */
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
break;
case 'x': /* --hexdump */
hexdump_g = TRUE;
break;
default:
usage();
leave(EXIT_FAILURE);
} /* end switch */
} /* end for */
}
else {
HDfprintf(stderr, "Unknown argument: %s\n", argv[argno]);
usage();
leave(EXIT_FAILURE);
}
} /* end for */
/* If no arguments remain then print a usage message (instead of doing
* absolutely nothing ;-) */
if (argno >= argc) {
usage();
leave(EXIT_FAILURE);
} /* end if */
/* Check for conflicting arguments */
if (!is_valid_args()) {
usage();
leave(EXIT_FAILURE);
}
/* Setup a custom fapl for file accesses */
if (custom_vol_fapl) {
if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &vol_info, NULL)) < 0) {
error_msg("failed to setup file access property list (fapl) for file\n");
leave(EXIT_FAILURE);
}
}
if (preferred_driver) {
h5tools_vfd_info_t vfd_info;
vfd_info.info = NULL;
vfd_info.name = preferred_driver;
if (!HDstrcmp(preferred_driver, drivernames[ROS3_VFD_IDX])) {
#ifdef H5_HAVE_ROS3_VFD
vfd_info.info = (void *)&ros3_fa;
#else
HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
leave(EXIT_FAILURE);
#endif
}
else if (!HDstrcmp(preferred_driver, drivernames[HDFS_VFD_IDX])) {
#ifdef H5_HAVE_LIBHDFS
vfd_info.info = (void *)&hdfs_fa;
#else
HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
leave(EXIT_FAILURE);
#endif
}
if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, NULL, &vfd_info)) < 0) {
HDfprintf(rawerrorstream, "Error: Unable to create FAPL for file access\n\n");
leave(EXIT_FAILURE);
}
}
if (enable_error_stack > 0) {
H5Eset_auto2(H5E_DEFAULT, func, edata);
H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
}
/* Each remaining argument is an hdf5 file followed by an optional slash
* and object name.
*
* Example: ../dir1/foo/bar/baz
* \_________/\______/
* file obj
*
* The dichotomy is determined by calling H5Fopen() repeatedly until it
* succeeds. The first call uses the entire name and each subsequent call
* chops off the last component. If we reach the beginning of the name
* then there must have been something wrong with the file (perhaps it
* doesn't exist). */
show_file_name_g = (argc-argno > 1); /*show file names if more than one*/
while(argno < argc) {
H5L_info2_t li;
iter_t iter;
symlink_trav_t symlink_list;
size_t u;
fname = HDstrdup(argv[argno++]);
oname = NULL;
file_id = H5I_INVALID_HID;
while (fname && *fname) {
file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
(fapl_id == H5P_DEFAULT) ? FALSE : TRUE, drivername, sizeof drivername);
if (file_id >= 0) {
if (verbose_g)
PRINTSTREAM(rawoutstream, "Opened \"%s\" with %s driver.\n", fname, drivername);
break; /*success*/
} /* end if */
/* Shorten the file name; lengthen the object name */
x = oname;
oname = HDstrrchr(fname, '/');
if (x)
*x = '/';
if (!oname)
break;
*oname = '\0';
} /* end while */
if (file_id < 0) {
HDfprintf(rawerrorstream, "%s: unable to open file\n", argv[argno-1]);
HDfree(fname);
err_exit = 1;
continue;
} /* end if */
if (oname) {
/* Always use absolute paths to avoid confusion, keep track of where
* to begin path name output */
*oname = '/';
iter.base_len = HDstrlen(oname);
iter.base_len -= oname[iter.base_len-1] == '/';
x = oname;
if (NULL == (oname = HDstrdup(oname))) {
HDfprintf(rawerrorstream, "memory allocation failed\n");
H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
*x = '\0';
/* Delay specifying the name start point so the original object name
* is displayed if it is a link or non-group object */
iter.name_start = 1;
}
if (!oname || !*oname) {
oname = root_name;
if (recursive_g)
display_root_g = TRUE;
iter.base_len = 0;
iter.name_start = 0;
/* Use x to remember if we have allocated space in oname */
x = NULL;
} /* end if */
/* Remember the file information for later */
iter.fname = fname;
iter.fid = file_id;
iter.gid = H5I_INVALID_HID;
iter.symlink_target = FALSE;
iter.symlink_list = &symlink_list;
iter.symlink_list->dangle_link = FALSE;
/* Initialize list of visited symbolic links */
symlink_list.nused = symlink_list.nalloc = 0;
symlink_list.objs = NULL;
/* Check for root group as object name */
if (HDstrcmp(oname, root_name)) {
/* Check the type of link given */
if (H5Lget_info2(file_id, oname, &li, H5P_DEFAULT) < 0) {
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
h5tool_format_t *info = &ls_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
h5tools_str_reset(&buffer);
print_obj_name(&buffer, &iter, oname, "**NOT FOUND**");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
} /* end if */
} /* end if */
else
li.type = H5L_TYPE_HARD;
/* Open the object and display it's information */
if (li.type == H5L_TYPE_HARD) {
if (visit_obj(file_id, oname, &iter) < 0) {
H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
} /* end if(li.type == H5L_TYPE_HARD) */
else {
/* Specified name is not for object -- list that link */
/* Use file_id ID for root group ID */
iter.gid = file_id;
list_lnk(oname, &li, &iter);
}
H5Fclose(file_id);
HDfree(fname);
if (x)
HDfree(oname);
for (u = 0; u < symlink_list.nused; u++) {
if (symlink_list.objs[u].type == H5L_TYPE_EXTERNAL)
HDfree(symlink_list.objs[u].file);
HDfree(symlink_list.objs[u].path);
}
HDfree(symlink_list.objs);
/* if no-dangling-links option specified and dangling link found */
if (no_dangling_link_g && iter.symlink_list->dangle_link)
err_exit = 1;
} /* end while */
if (fapl_id != H5P_DEFAULT) {
if (0 < H5Pclose(fapl_id)) {
HDfprintf(rawerrorstream, "Error: Unable to set close fapl entry\n\n");
H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
}
H5Eset_auto2(H5E_DEFAULT, func, edata);
if (err_exit)
leave(EXIT_FAILURE);
else
leave(EXIT_SUCCESS);
} /* end main() */
|