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* compatability -> compatibilityjan.nijtmans2016-12-011-1/+1
* just fix some characters that fossil cannot handle welljan.nijtmans2012-11-071-2/+2
* Tidying up, adding names to log entries, etc.dkf2007-10-111-956/+912
* * ChangeLog.2000 (new file):hobbs2002-01-291-0/+2583
grammer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_flush_table(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5SM_master_table_t *table) { uint8_t *buf=NULL; /* Temporary buffer */ herr_t ret_value=SUCCEED; FUNC_ENTER_NOAPI_NOINIT(H5SM_flush_table) /* check arguments */ HDassert(f); HDassert(H5F_addr_defined(addr)); HDassert(table); if(table->cache_info.is_dirty) { uint8_t *p; /* Pointer into raw data buffer */ size_t size; /* Header size on disk */ uint32_t computed_chksum; /* Computed metadata checksum value */ int x; /* Counter variable */ /* Verify that we're writing version 0 of the table; this is the only * version defined so far. */ HDassert(f->shared->sohm_vers == HDF5_SHAREDHEADER_VERSION); /* Encode the master table and all of the index headers as one big blob */ size = H5SM_TABLE_SIZE(f) + (H5SM_INDEX_HEADER_SIZE(f) * table->num_indexes); /* Allocate the buffer */ if(NULL == (buf = H5FL_BLK_MALLOC(shared_mesg_cache, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Encode the master table */ p = buf; /* Encode magic number */ HDmemcpy(p, H5SM_TABLE_MAGIC, (size_t)H5SM_TABLE_SIZEOF_MAGIC); p += H5SM_TABLE_SIZEOF_MAGIC; /* Encode each index header */ for(x=0; x<table->num_indexes; ++x) { *p++ = H5SM_LIST_VERSION; /* Encode version for this list. */ *p++ = table->indexes[x].index_type; /* Is message index a list or a B-tree? */ UINT16ENCODE(p, table->indexes[x].mesg_types); /* Type of messages in the index */ UINT32ENCODE(p, table->indexes[x].min_mesg_size); /* Minimum size of message to share */ UINT16ENCODE(p, table->indexes[x].list_max); /* List cutoff; fewer than this number and index becomes a list */ UINT16ENCODE(p, table->indexes[x].btree_min); /* B-tree cutoff; more than this number and index becomes a B-tree */ UINT16ENCODE(p, table->indexes[x].num_messages); /* Number of messages shared */ H5F_addr_encode(f, &p, table->indexes[x].index_addr); /* Address of the actual index */ H5F_addr_encode(f, &p, table->indexes[x].heap_addr); /* Address of the index's heap */ } /* Compute checksum on buffer */ computed_chksum = H5_checksum_metadata(buf, (size - H5SM_SIZEOF_CHECKSUM), 0); UINT32ENCODE(p, computed_chksum); /* Write the table to disk */ HDassert((size_t)(p - buf) == size); if(H5F_block_write(f, H5FD_MEM_SOHM_TABLE, addr, size, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFLUSH, FAIL, "unable to save sohm table to disk") table->cache_info.is_dirty = FALSE; } /* end if */ if(destroy) if(H5SM_dest_table(f, table) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFREE, FAIL, "unable to destroy sohm table") done: /* Free buffer if allocated */ if(buf) buf = H5FL_BLK_FREE(shared_mesg_cache, buf); FUNC_LEAVE_NOAPI(ret_value) } /* end H5SM_flush_table */ /*------------------------------------------------------------------------- * Function: H5SM_load_table * * Purpose: Loads the master table of Shared Object Header Message * indexes. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static H5SM_master_table_t * H5SM_load_table(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void UNUSED *udata1, void UNUSED *udata2) { H5SM_master_table_t *table = NULL; size_t table_size; /* Size of SOHM master table on disk */ uint8_t *buf=NULL; /* Reading buffer */ const uint8_t *p; /* Pointer into input buffer */ uint32_t stored_chksum; /* Stored metadata checksum value */ uint32_t computed_chksum; /* Computed metadata checksum value */ uint8_t x; /* Counter variable for index headers */ H5SM_master_table_t *ret_value; FUNC_ENTER_NOAPI_NOINIT(H5SM_load_table) /* Verify that we're reading version 0 of the table; this is the only * version defined so far. */ HDassert(f->shared->sohm_vers == HDF5_SHAREDHEADER_VERSION); /* Allocate space for the master table in memory */ if(NULL == (table = H5FL_CALLOC(H5SM_master_table_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Read number of indexes and version from file superblock */ table->num_indexes = f->shared->sohm_nindexes; HDassert(addr == f->shared->sohm_addr); HDassert(addr != HADDR_UNDEF); HDassert(table->num_indexes > 0); /* Compute the size of the SOHM table header on disk. This is the "table" itself * plus each index within the table */ table_size = H5SM_TABLE_SIZE(f) + (table->num_indexes * H5SM_INDEX_HEADER_SIZE(f)); /* Allocate temporary buffer */ if(NULL == (buf = H5FL_BLK_MALLOC(shared_mesg_cache, table_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Read header from disk */ if(H5F_block_read(f, H5FD_MEM_SOHM_TABLE, addr, table_size, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_SOHM, H5E_READERROR, NULL, "can't read SOHM table") p = buf; /* Check magic number */ if(HDmemcmp(p, H5SM_TABLE_MAGIC, (size_t)H5SM_TABLE_SIZEOF_MAGIC)) HGOTO_ERROR(H5E_SOHM, H5E_CANTLOAD, NULL, "bad SOHM table signature"); p += H5SM_TABLE_SIZEOF_MAGIC; /* Don't count the checksum in the table size yet, since it comes after * all of the index headers */ HDassert((size_t)(p - buf) == H5SM_TABLE_SIZE(f) - H5SM_SIZEOF_CHECKSUM); /* Allocate space for the index headers in memory*/ if(NULL == (table->indexes = (H5SM_index_header_t *)H5FL_ARR_MALLOC(H5SM_index_header_t, (size_t)table->num_indexes))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for SOHM indexes") /* Read in the index headers */ for(x=0; x<table->num_indexes; ++x) { if (H5SM_LIST_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "bad shared message list version number") table->indexes[x].index_type= *p++; /* type of the index (list or B-tree) */ UINT16DECODE(p, table->indexes[x].mesg_types); UINT32DECODE(p, table->indexes[x].min_mesg_size); UINT16DECODE(p, table->indexes[x].list_max); UINT16DECODE(p, table->indexes[x].btree_min); UINT16DECODE(p, table->indexes[x].num_messages); H5F_addr_decode(f, &p, &(table->indexes[x].index_addr)); H5F_addr_decode(f, &p, &(table->indexes[x].heap_addr)); } /* Read in checksum */ UINT32DECODE(p, stored_chksum); /* Sanity check */ HDassert((size_t)(p - buf) == table_size); /* Compute checksum on entire header */ computed_chksum = H5_checksum_metadata(buf, (table_size - H5SM_SIZEOF_CHECKSUM), 0); /* Verify checksum */ if(stored_chksum != computed_chksum) HGOTO_ERROR(H5E_SOHM, H5E_BADVALUE, NULL, "incorrect metadata checksum for shared message table"); ret_value = table; done: /* Free buffer if allocated */ if(buf) buf = H5FL_BLK_FREE(shared_mesg_cache, buf); FUNC_LEAVE_NOAPI(ret_value) } /* end H5SM_load_table */ /*------------------------------------------------------------------------- * Function: H5SM_clear_table * * Purpose: Mark this table as no longer being dirty. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_clear_table(H5F_t *f, H5SM_master_table_t *table, hbool_t destroy) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5SM_clear_table) /* * Check arguments. */ HDassert(table); /* Reset the dirty flag. */ table->cache_info.is_dirty = FALSE; if(destroy) if(H5SM_dest_table(f, table) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFREE, FAIL, "unable to delete SOHM master table") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5SM_clear_table */ /*------------------------------------------------------------------------- * Function: H5SM_dest_table * * Purpose: Frees memory used by the SOHM table. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_dest_table(H5F_t UNUSED *f, H5SM_master_table_t* table) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5SM_dest_table) HDassert(table); HDassert(table->indexes); H5FL_ARR_FREE(H5SM_index_header_t, table->indexes); H5FL_FREE(H5SM_master_table_t, table); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5SM_dest_table */ /*------------------------------------------------------------------------- * Function: H5SM_table_size * * Purpose: Returns the size of the table encoded on disk. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_table_size(const H5F_t *f, const H5SM_master_table_t *table, size_t *size_ptr) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5SM_table_size) /* check arguments */ HDassert(f); HDassert(table); HDassert(size_ptr); /* Set size value */ *size_ptr = H5SM_TABLE_SIZE(f) + (table->num_indexes * H5SM_INDEX_HEADER_SIZE(f)); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5SM_table_size */ /*------------------------------------------------------------------------- * Function: H5SM_flush_list * * Purpose: Flush this list index. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_flush_list(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5SM_list_t *list) { uint8_t *buf=NULL; /* Temporary buffer */ herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT(H5SM_flush_list) /* check arguments */ HDassert(f); HDassert(H5F_addr_defined(addr)); HDassert(list); HDassert(list->header); if (list->cache_info.is_dirty) { uint8_t *p; /* Pointer into raw data buffer */ size_t size; /* Header size on disk */ uint32_t computed_chksum; /* Computed metadata checksum value */ hsize_t x; hsize_t mesgs_written; size = H5SM_LIST_SIZE(f, list->header->num_messages); /* Allocate temporary buffer */ if(NULL == (buf = H5FL_BLK_MALLOC(shared_mesg_cache, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Encode the list */ p = buf; /* Encode magic number */ HDmemcpy(p, H5SM_LIST_MAGIC, (size_t)H5SM_LIST_SIZEOF_MAGIC); p += H5SM_LIST_SIZEOF_MAGIC; /* Write messages from the messages array to disk */ mesgs_written = 0; for(x=0; x<list->header->list_max && mesgs_written < list->header->num_messages; x++) { if(list->messages[x].location != H5SM_NO_LOC) { if(H5SM_message_encode(f, p, &(list->messages[x]))< 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFLUSH, FAIL, "unable to write shared message to disk") p+=H5SM_SOHM_ENTRY_SIZE(f); ++mesgs_written; } } HDassert(mesgs_written == list->header->num_messages); /* Compute checksum on buffer */ computed_chksum = H5_checksum_metadata(buf, (size - H5SM_SIZEOF_CHECKSUM), 0); UINT32ENCODE(p, computed_chksum); /* Write the list to disk */ HDassert((size_t)(p - buf) == size); if(H5F_block_write(f, H5FD_MEM_SOHM_INDEX, addr, size, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFLUSH, FAIL, "unable to save sohm table to disk") list->cache_info.is_dirty = FALSE; } if(destroy) if(H5SM_dest_list(f, list) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFREE, FAIL, "unable to destroy list") done: /* Free buffer if allocated */ if(buf) buf = H5FL_BLK_FREE(shared_mesg_cache, buf); FUNC_LEAVE_NOAPI(ret_value) } /* end H5SM_flush_list */ /*------------------------------------------------------------------------- * Function: H5SM_load_list * * Purpose: Loads a list of SOHM messages. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static H5SM_list_t * H5SM_load_list(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void UNUSED *udata1, void *udata2) { H5SM_list_t *list; /* The SOHM list being read in */ H5SM_index_header_t *header = (H5SM_index_header_t *) udata2; /* Index header for this list */ size_t size; /* Size of SOHM list on disk */ uint8_t *buf = NULL; /* Reading buffer */ uint8_t *p; /* Pointer into input buffer */ uint32_t stored_chksum; /* Stored metadata checksum value */ uint32_t computed_chksum; /* Computed metadata checksum value */ hsize_t x; /* Counter variable for messages in list */ H5SM_list_t *ret_value=NULL; FUNC_ENTER_NOAPI_NOINIT(H5SM_load_list) HDassert(header); /* Allocate space for the SOHM list data structure */ if(NULL == (list = H5FL_MALLOC(H5SM_list_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") HDmemset(&list->cache_info, 0, sizeof(H5AC_info_t)); /* Allocate list in memory as an array*/ if((list->messages = (H5SM_sohm_t *)H5FL_ARR_MALLOC(H5SM_sohm_t, header->list_max)) == NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "file allocation failed for SOHM list") list->header = header; /* Compute the size of the SOHM list on disk */ size = H5SM_LIST_SIZE(f, header->num_messages); /* Allocate temporary buffer */ if(NULL == (buf = H5FL_BLK_MALLOC(shared_mesg_cache, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Read list from disk */ if(H5F_block_read(f, H5FD_MEM_SOHM_INDEX, addr, size, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_SOHM, H5E_READERROR, NULL, "can't read SOHM list") p = buf; /* Check magic number */ if(HDmemcmp(p, H5SM_LIST_MAGIC, (size_t)H5SM_LIST_SIZEOF_MAGIC)) HGOTO_ERROR(H5E_SOHM, H5E_CANTLOAD, NULL, "bad SOHM list signature"); p += H5SM_LIST_SIZEOF_MAGIC; /* Read messages into the list array */ for(x = 0; x < header->num_messages; x++) { if(H5SM_message_decode(f, p, &(list->messages[x])) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTLOAD, NULL, "can't decode shared message"); p += H5SM_SOHM_ENTRY_SIZE(f); } /* end for */ /* Read in checksum */ UINT32DECODE(p, stored_chksum); /* Sanity check */ HDassert((size_t)(p - buf) == size); /* Compute checksum on entire header */ computed_chksum = H5_checksum_metadata(buf, (size - H5SM_SIZEOF_CHECKSUM), 0); /* Verify checksum */ if(stored_chksum != computed_chksum) HGOTO_ERROR(H5E_SOHM, H5E_BADVALUE, NULL, "incorrect metadata checksum for shared message list"); /* Initialize the rest of the array */ for(x = header->num_messages; x < header->list_max; x++) list->messages[x].location = H5SM_NO_LOC; ret_value = list; done: /* Free buffer if allocated */ if(buf) buf = H5FL_BLK_FREE(shared_mesg_cache, buf); if(ret_value == NULL) { if(list) { if(list->messages) H5FL_ARR_FREE(H5SM_sohm_t, list->messages); H5FL_FREE(H5SM_list_t, list); } /* end if */ } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5SM_load_list */ /*------------------------------------------------------------------------- * Function: H5SM_clear_list * * Purpose: Marks a list as not dirty. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_clear_list(H5F_t *f, H5SM_list_t *list, hbool_t destroy) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5SM_clear_list) /* * Check arguments. */ HDassert(list); /* Reset the dirty flag. */ list->cache_info.is_dirty = FALSE; if(destroy) if(H5SM_dest_list(f, list) < 0) HGOTO_ERROR(H5E_SOHM, H5E_CANTFREE, FAIL, "unable to destroy SOHM list") done: FUNC_LEAVE_NOAPI(ret_value) } /* end of H5SM_clear_list */ /*------------------------------------------------------------------------- * Function: H5SM_dest_list * * Purpose: Frees all memory used by the list. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_dest_list(H5F_t UNUSED *f, H5SM_list_t* list) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5SM_dest_list) HDassert(list); HDassert(list->messages); H5FL_ARR_FREE(H5SM_sohm_t, list->messages); H5FL_FREE(H5SM_list_t, list); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5SM_dest_list */ /*------------------------------------------------------------------------- * Function: H5SM_list_size * * Purpose: Gets the size of a list on disk. * * Return: Non-negative on success/Negative on failure * * Programmer: James Laird * November 6, 2006 * *------------------------------------------------------------------------- */ static herr_t H5SM_list_size(const H5F_t UNUSED *f, const H5SM_list_t *list, size_t *size_ptr) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5SM_list_size) /* check arguments */ HDassert(f); HDassert(list); HDassert(list->header); HDassert(size_ptr); /* Set size value */ *size_ptr = H5SM_LIST_SIZE(f, list->header->list_max); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5SM_list_size */