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-rw-r--r--CMakeInstallation.cmake10
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-rw-r--r--src/H5ST.c16
-rw-r--r--src/H5Sall.c370
-rw-r--r--src/H5Sdbg.c18
-rw-r--r--src/H5Sdeprec.c121
-rw-r--r--src/H5Shyper.c10691
-rw-r--r--src/H5Smpio.c1243
-rw-r--r--src/H5Snone.c577
-rw-r--r--src/H5Spkg.h191
-rw-r--r--src/H5Spoint.c1577
-rw-r--r--src/H5Sprivate.h58
-rw-r--r--src/H5Spublic.h113
-rw-r--r--src/H5Sselect.c910
-rw-r--r--src/H5Stest.c333
-rw-r--r--src/H5T.c60
-rw-r--r--src/H5Tcommit.c4
-rw-r--r--src/H5Tconv.c24
-rw-r--r--src/H5Tenum.c6
-rw-r--r--src/H5Tfields.c12
-rw-r--r--src/H5Tnative.c14
-rw-r--r--src/H5Torder.c4
-rw-r--r--src/H5Tvlen.c34
-rw-r--r--src/H5VL.c443
-rw-r--r--src/H5VLcallback.c360
-rw-r--r--src/H5VLconnector.h417
-rw-r--r--src/H5VLconnector_passthru.h166
-rw-r--r--src/H5VLint.c1044
-rw-r--r--src/H5VLnative.c25
-rw-r--r--src/H5VLnative_attr.c16
-rw-r--r--src/H5VLnative_dataset.c19
-rw-r--r--src/H5VLnative_file.c25
-rw-r--r--src/H5VLnative_group.c14
-rw-r--r--src/H5VLnative_link.c32
-rw-r--r--src/H5VLnative_object.c25
-rw-r--r--src/H5VLnative_private.h8
-rw-r--r--src/H5VLpassthru.c314
-rw-r--r--src/H5VLpkg.h15
-rw-r--r--src/H5VLprivate.h36
-rw-r--r--src/H5VLpublic.h491
-rw-r--r--src/H5VM.c23
-rw-r--r--src/H5VMprivate.h3
-rw-r--r--src/H5Z.c6
-rw-r--r--src/H5Zfletcher32.c6
-rw-r--r--src/H5Zscaleoffset.c29
-rw-r--r--src/H5Zshuffle.c18
-rw-r--r--src/H5Ztrans.c8
-rw-r--r--src/H5checksum.c11
-rw-r--r--src/H5dbg.c2
-rw-r--r--src/H5err.txt2
-rw-r--r--src/H5private.h14
-rw-r--r--src/H5public.h4
-rw-r--r--src/H5system.c132
-rw-r--r--src/H5timer.c16
-rw-r--r--src/H5trace.c26
-rw-r--r--src/H5vers.txt2
-rw-r--r--src/H5win32defs.h14
-rw-r--r--src/Makefile.am13
-rw-r--r--src/libhdf5.settings.in2
-rw-r--r--test/CMakeLists.txt257
-rw-r--r--test/CMakePassthroughVOLTests.cmake (renamed from test/CMakeVOLTests.cmake)179
-rw-r--r--test/CMakeTests.cmake547
-rw-r--r--test/CMakeVFDTests.cmake209
-rw-r--r--test/Makefile.am20
-rw-r--r--test/accum.c6
-rw-r--r--test/app_ref.c6
-rw-r--r--test/big.c4
-rw-r--r--test/bittests.c174
-rw-r--r--test/cache_logging.c6
-rw-r--r--test/cache_tagging.c54
-rw-r--r--test/cmpd_dset.c2
-rw-r--r--test/direct_chunk.c131
-rw-r--r--test/dsets.c30
-rw-r--r--test/dtypes.c24
-rw-r--r--test/enc_dec_plist.c878
-rw-r--r--test/evict_on_close.c6
-rw-r--r--test/external.c262
-rw-r--r--test/external_common.c127
-rw-r--r--test/external_common.h45
-rw-r--r--test/external_env.c218
-rw-r--r--test/fheap.c11
-rw-r--r--test/file_image.c2
-rw-r--r--test/fill18.h5bin0 -> 3479 bytes
-rw-r--r--test/flush1.c2
-rw-r--r--test/flush2.c2
-rw-r--r--test/flushrefreshTest.cmake106
-rw-r--r--test/gen_plist.c4
-rw-r--r--test/h5test.c233
-rw-r--r--test/h5test.h6
-rw-r--r--test/hyperslab.c8
-rw-r--r--test/links.c2
-rw-r--r--test/mount.c38
-rw-r--r--test/null_vol_connector.c32
-rw-r--r--test/objcopy.c47
-rw-r--r--test/ohdr.c407
-rw-r--r--test/page_buffer.c4
-rw-r--r--test/set_extent.c4
-rw-r--r--test/tattr.c220
-rw-r--r--test/testerror.sh.in4
-rw-r--r--test/testexternal_env.sh.in42
-rw-r--r--test/testframe.c338
-rw-r--r--test/testvds_env.sh.in44
-rw-r--r--test/tfile.c551
-rw-r--r--test/th5o.c4
-rw-r--r--test/th5s.c972
-rw-r--r--test/tid.c28
-rw-r--r--test/titerate.c12
-rw-r--r--test/trefer.c238
-rw-r--r--test/tselect.c3012
-rw-r--r--test/tsohm.c30
-rw-r--r--test/ttime.c6
-rw-r--r--test/ttsafe_error.c65
-rw-r--r--test/tunicode.c2
-rw-r--r--test/tvlstr.c18
-rw-r--r--test/vds.c1006
-rw-r--r--test/vds_env.c364
-rw-r--r--test/vfd.c44
-rw-r--r--test/vol.c98
-rw-r--r--testpar/CMakeLists.txt40
-rw-r--r--testpar/CMakeTests.cmake106
-rw-r--r--testpar/CMakeVFDTests.cmake30
-rw-r--r--testpar/Makefile.am5
-rw-r--r--testpar/t_cache.c17
-rw-r--r--testpar/t_coll_md_read.c336
-rw-r--r--testpar/t_filters_parallel.c11
-rw-r--r--testpar/t_mdset.c7
-rw-r--r--testpar/t_prop.c4
-rw-r--r--testpar/t_pvds.c4
-rw-r--r--testpar/t_shapesame.c32
-rw-r--r--testpar/t_span_tree.c28
-rw-r--r--testpar/testphdf5.c421
-rw-r--r--testpar/testphdf5.h3
-rw-r--r--tools/Makefile.am13
-rw-r--r--tools/lib/CMakeLists.txt38
-rw-r--r--tools/lib/h5diff.c1
-rw-r--r--tools/lib/h5diff_array.c11
-rw-r--r--tools/src/h5copy/CMakeLists.txt18
-rw-r--r--tools/src/h5diff/CMakeLists.txt70
-rw-r--r--tools/src/h5dump/CMakeLists.txt26
-rw-r--r--tools/src/h5format_convert/CMakeLists.txt26
-rw-r--r--tools/src/h5import/CMakeLists.txt30
-rw-r--r--tools/src/h5jam/CMakeLists.txt59
-rw-r--r--tools/src/h5ls/CMakeLists.txt18
-rw-r--r--tools/src/h5repack/CMakeLists.txt20
-rw-r--r--tools/src/h5repack/Makefile.am2
-rw-r--r--tools/src/h5repack/h5repack.c14
-rw-r--r--tools/src/h5repack/h5repack_copy.c30
-rw-r--r--tools/src/h5repack/h5repack_filters.c10
-rw-r--r--tools/src/h5stat/CMakeLists.txt18
-rw-r--r--tools/src/h5stat/h5stat.c3
-rw-r--r--tools/src/misc/CMakeLists.txt98
-rw-r--r--tools/src/misc/Makefile.am24
-rw-r--r--tools/test/h5copy/CMakeLists.txt26
-rw-r--r--tools/test/h5copy/CMakeTests.cmake72
-rw-r--r--tools/test/h5diff/CMakeLists.txt26
-rw-r--r--tools/test/h5diff/CMakeTests.cmake44
-rw-r--r--tools/test/h5dump/CMakeLists.txt28
-rw-r--r--tools/test/h5dump/CMakeTests.cmake145
-rw-r--r--tools/test/h5dump/CMakeTestsPBITS.cmake16
-rw-r--r--tools/test/h5dump/CMakeTestsVDS.cmake32
-rw-r--r--tools/test/h5dump/CMakeTestsXML.cmake16
-rw-r--r--tools/test/h5dump/h5dumpgentest.c24
-rw-r--r--tools/test/h5dump/testh5dump.sh.in41
-rw-r--r--tools/test/h5format_convert/CMakeLists.txt17
-rw-r--r--tools/test/h5format_convert/CMakeTests.cmake99
-rw-r--r--tools/test/h5import/CMakeLists.txt11
-rw-r--r--tools/test/h5import/CMakeTests.cmake33
-rw-r--r--tools/test/h5jam/CMakeLists.txt26
-rw-r--r--tools/test/h5jam/CMakeTests.cmake36
-rw-r--r--tools/test/h5ls/CMakeLists.txt22
-rw-r--r--tools/test/h5ls/CMakeTests.cmake25
-rw-r--r--tools/test/h5ls/CMakeTestsVDS.cmake24
-rw-r--r--tools/test/h5repack/CMakeLists.txt66
-rw-r--r--tools/test/h5repack/CMakeTests.cmake108
-rw-r--r--tools/test/h5repack/CMakeVFDTests.cmake2
-rw-r--r--tools/test/h5repack/h5repack.sh.in8
-rw-r--r--tools/test/h5repack/h5repacktst.c12
-rw-r--r--tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl14
-rw-r--r--tools/test/h5stat/CMakeLists.txt4
-rw-r--r--tools/test/h5stat/CMakeTests.cmake28
-rw-r--r--tools/test/misc/CMakeLists.txt46
-rw-r--r--tools/test/misc/CMakeTestsClear.cmake50
-rw-r--r--tools/test/misc/CMakeTestsMkgrp.cmake18
-rw-r--r--tools/test/misc/CMakeTestsRepart.cmake14
-rw-r--r--tools/test/misc/vds/CMakeLists.txt11
-rw-r--r--tools/test/perform/CMakeLists.txt112
-rw-r--r--tools/test/perform/CMakeTests.cmake4
-rw-r--r--tools/test/perform/chunk_cache.c24
-rw-r--r--tools/test/perform/pio_engine.c6
-rw-r--r--tools/test/perform/pio_standalone.c4
-rw-r--r--tools/test/perform/sio_engine.c6
-rw-r--r--tools/testfiles/t128bit_float.h5bin0 -> 2160 bytes
574 files changed, 49627 insertions, 34197 deletions
diff --git a/CMakeInstallation.cmake b/CMakeInstallation.cmake
index 7a0746a..b933c29 100644
--- a/CMakeInstallation.cmake
+++ b/CMakeInstallation.cmake
@@ -33,7 +33,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
EXPORT ${HDF5_EXPORTED_TARGETS}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
- NAMESPACE ${HDF5_PACKAGE}::
+ NAMESPACE ${HDF_PACKAGE_NAMESPACE}
COMPONENT configinstall
)
endif ()
@@ -45,7 +45,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
export (
TARGETS ${HDF5_LIBRARIES_TO_EXPORT} ${HDF5_LIB_DEPENDENCIES} ${HDF5_UTILS_TO_EXPORT}
FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
- NAMESPACE ${HDF5_PACKAGE}::
+ NAMESPACE ${HDF_PACKAGE_NAMESPACE}
)
endif ()
endif ()
@@ -104,6 +104,12 @@ endif ()
# Configure the hdf5-config-version .cmake file for the install directory
#-----------------------------------------------------------------------------
if (NOT HDF5_EXTERNALLY_CONFIGURED)
+ # 3.11 or greater
+ #write_basic_package_version_file (
+ # ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
+ # VERSION ${HDF5_PACKAGE_VERSION}
+ # COMPATIBILITY SameMinorVersion
+ #)
configure_file (
${HDF_RESOURCES_DIR}/hdf5-config-version.cmake.in
${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake @ONLY
diff --git a/CMakeLists.txt b/CMakeLists.txt
index b9cdf4d..fc656c0 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -10,7 +10,7 @@ project (HDF5 C)
# set CMAKE_INSTALL_PREFIX to the required install path.
# Make install can be used to install all components for system-wide use.
#
-if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}")
+if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_CURRENT_BINARY_DIR)
MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
"CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}"
" == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n"
@@ -314,7 +314,7 @@ set (HDF5_PACKAGE_NAME "HDF5")
set (HDF5_PACKAGE_VERSION "${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}")
set (HDF5_PACKAGE_VERSION_MAJOR "${H5_VERS_MAJOR}.${H5_VERS_MINOR}")
set (HDF5_PACKAGE_VERSION_MINOR "${H5_VERS_RELEASE}")
-if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "")
+if (H5_VERS_SUBRELEASE)
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}")
else ()
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
@@ -416,18 +416,23 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)
# Mac OS X Options
#-----------------------------------------------------------------------------
if (HDF5_BUILD_FRAMEWORKS AND NOT BUILD_SHARED_LIBS)
- set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries")
+ set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries" FORCE)
endif ()
#-----------------------------------------------------------------------------
# Option to Build Shared and Static libs, default is both
#-----------------------------------------------------------------------------
+option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF)
+set (H5_ENABLE_STATIC_LIB YES)
+if (ONLY_SHARED_LIBS)
+ set (H5_ENABLE_STATIC_LIB NO)
+ set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries")
+endif ()
option (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
set (H5_ENABLE_SHARED_LIB NO)
if (BUILD_SHARED_LIBS)
set (H5_ENABLE_SHARED_LIB YES)
endif ()
-set (H5_ENABLE_STATIC_LIB YES)
set (CMAKE_POSITION_INDEPENDENT_CODE ON)
#-----------------------------------------------------------------------------
@@ -683,8 +688,10 @@ endif ()
option (HDF5_ENABLE_THREADSAFE "Enable thread-safety" OFF)
if (HDF5_ENABLE_THREADSAFE)
# check for unsupported options
- message (STATUS " **** thread-safety option not supported with static library **** ")
- message (STATUS " **** thread-safety option will not be used building static library **** ")
+ if (WIN32)
+ message (STATUS " **** thread-safety option not supported with static library **** ")
+ message (STATUS " **** thread-safety option will not be used building static library **** ")
+ endif ()
if (HDF5_ENABLE_PARALLEL)
if (NOT ALLOW_UNSUPPORTED)
message (FATAL_ERROR " **** parallel and thread-safety options are not supported **** ")
@@ -722,9 +729,9 @@ if (HDF5_ENABLE_THREADSAFE)
endif ()
endif ()
set(THREADS_PREFER_PTHREAD_FLAG ON)
- find_package(Threads)
- if (NOT Threads_FOUND)
- message (STATUS " **** thread-safe package not found - threads still might work **** ")
+ find_package(Threads REQUIRED)
+ if (Threads_FOUND)
+ set (H5_HAVE_THREADSAFE 1)
endif ()
endif ()
@@ -735,13 +742,17 @@ add_subdirectory (src)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
- add_dependencies (${HDF5_LIB_TARGET} ZLIB)
+ if (NOT ONLY_SHARED_LIBS)
+ add_dependencies (${HDF5_LIB_TARGET} ZLIB)
+ endif ()
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} ZLIB)
endif ()
endif ()
if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
- add_dependencies (${HDF5_LIB_TARGET} SZIP)
+ if (NOT ONLY_SHARED_LIBS)
+ add_dependencies (${HDF5_LIB_TARGET} SZIP)
+ endif ()
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} SZIP)
endif ()
@@ -754,7 +765,7 @@ endif ()
option (BUILD_TESTING "Build HDF5 Unit Testing" ON)
if (BUILD_TESTING)
set (DART_TESTING_TIMEOUT 1200
- CACHE INTEGER
+ CACHE STRING
"Timeout in seconds for each test (default 1200=20minutes)"
)
@@ -770,11 +781,11 @@ if (BUILD_TESTING)
mark_as_advanced (HDF5_TEST_FHEAP_VFD)
endif ()
- option (HDF5_TEST_VOL "Execute tests with different VOL connectors" OFF)
- mark_as_advanced (HDF5_TEST_VOL)
- if (HDF5_TEST_VOL)
- option (HDF5_TEST_FHEAP_VOL "Execute fheap test with different VOL connectors" ON)
- mark_as_advanced (HDF5_TEST_FHEAP_VOL)
+ option (HDF5_TEST_PASSTHROUGH_VOL "Execute tests with different passthrough VOL connectors" OFF)
+ mark_as_advanced (HDF5_TEST_PASSTHROUGH_VOL)
+ if (HDF5_TEST_PASSTHROUGH_VOL)
+ option (HDF5_TEST_FHEAP_PASSTHROUGH_VOL "Execute fheap test with different passthrough VOL connectors" ON)
+ mark_as_advanced (HDF5_TEST_FHEAP_PASSTHROUGH VOL)
endif ()
option (HDF_TEST_EXPRESS "Control testing framework (0-3)" "0")
@@ -845,7 +856,7 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
# Building with PGI requires CMake 3.3 or greater because previous versions
# of CMake add the wrong compiler flag for the PGI Fortran compiler.
- if ("${CMAKE_Fortran_COMPILER_ID}" MATCHES "PGI" AND "${CMAKE_VERSION}" VERSION_LESS "3.3")
+ if (CMAKE_Fortran_COMPILER_ID MATCHES "PGI" AND CMAKE_VERSION VERSION_LESS "3.3")
message (FATAL_ERROR " **** PGI FORTRAN REQUIRES CMAKE VERSION 3.3 OR GREATER **** ")
endif ()
diff --git a/CTestConfig.cmake b/CTestConfig.cmake
index 5b35688..d80f48f 100644
--- a/CTestConfig.cmake
+++ b/CTestConfig.cmake
@@ -45,9 +45,9 @@ set (VALGRIND_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=
set (CTEST_MEMORYCHECK_COMMAND "/usr/bin/valgrind")
set (CTEST_MEMORYCHECK_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe")
-set (CTEST_TEST_TIMEOUT 600 CACHE STRING
+set (CTEST_TEST_TIMEOUT 1200 CACHE STRING
"Maximum time allowed before CTest will kill the test.")
-set (DART_TESTING_TIMEOUT 600 CACHE STRING
+set (DART_TESTING_TIMEOUT 1200 CACHE STRING
"Maximum time allowed before CTest will kill the test." FORCE)
SET(CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING
diff --git a/MANIFEST b/MANIFEST
index 0fd0d5c..01ee8d8 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -71,12 +71,15 @@
./bin/errors _DO_NOT_DISTRIBUTE_
./bin/genparser
./bin/gcov_script _DO_NOT_DISTRIBUTE_
+./bin/h5cc.in
+./bin/h5redeploy.in
./bin/h5vers
./bin/iostats
./bin/locate_sw
./bin/make_err
./bin/make_overflow
./bin/make_vers
+./bin/Makefile.am
./bin/makehelp
./bin/mkdirs
./bin/newer
@@ -91,11 +94,8 @@
./bin/switch_maint_mode _DO_NOT_DISTRIBUTE_
./bin/timekeeper _DO_NOT_DISTRIBUTE_
./bin/trace
+./bin/warnhist _DO_NOT_DISTRIBUTE_
./bin/yodconfigure
-./bin/batch/cori_ctestP.sl.in.cmake
-./bin/batch/cori_ctestS.sl.in.cmake
-./bin/batch/cori_knl_ctestP.sl.in.cmake
-./bin/batch/cori_knl_ctestS.sl.in.cmake
./bin/batch/ctestP.lsf.in.cmake
./bin/batch/ctestP.sl.in.cmake
./bin/batch/ctestS.lsf.in.cmake
@@ -103,6 +103,7 @@
./bin/batch/knl_ctestP.sl.in.cmake
./bin/batch/knl_ctestS.sl.in.cmake
./bin/batch/knl_H5detect.sl.in.cmake
+./bin/batch/ctest.qsub.in.cmake
./bin/batch/ray_ctestP.lsf.in.cmake
./bin/batch/ray_ctestS.lsf.in.cmake
./bin/batch/raybsub
@@ -245,6 +246,7 @@
./fortran/src/H5Sff.F90
./fortran/src/H5Tf.c
./fortran/src/H5Tff.F90
+./fortran/src/H5VLff.F90
./fortran/src/H5Zf.c
./fortran/src/H5Zff.F90
./fortran/src/H5config_f.inc.cmake
@@ -264,8 +266,8 @@
./fortran/src/h5fc.in
./fortran/src/hdf5_fortrandll.def.in
-
./fortran/test/Makefile.am
+./fortran/test/vol_connector.F90
./fortran/test/fflush1.F90
./fortran/test/fflush2.F90
./fortran/test/fortranlib_test.F90
@@ -461,8 +463,9 @@
./release_docs/INSTALL_parallel
./release_docs/INSTALL_Warnings.txt
./release_docs/INSTALL_Windows.txt
-./release_docs/RELEASE.txt
+./release_docs/README_HDF5_CMake
./release_docs/README_HPC
+./release_docs/RELEASE.txt
./release_docs/USING_HDF5_CMake.txt
./release_docs/USING_HDF5_VS.txt
@@ -846,6 +849,7 @@
./src/H5S.c
./src/H5Sall.c
./src/H5Sdbg.c
+./src/H5Sdeprec.c
./src/H5Shyper.c
./src/H5Smodule.h
./src/H5Smpio.c
@@ -900,6 +904,8 @@
./src/H5TSprivate.h
./src/H5VL.c
./src/H5VLcallback.c
+./src/H5VLconnector.h
+./src/H5VLconnector_passthru.h
./src/H5VLint.c
./src/H5VLmodule.h
./src/H5VLnative.c
@@ -990,6 +996,9 @@
./test/evict_on_close.c
./test/extend.c
./test/external.c
+./test/external_common.c
+./test/external_common.h
+./test/external_env.c
./test/error_test.c
./test/err_compat.c
./test/filter_error.h5
@@ -1007,6 +1016,7 @@
./test/file_image.c
./test/file_image_core_test.h5
./test/fill_old.h5
+./test/fill18.h5
./test/fillval.c
./test/filter_fail.c
./test/filter_plugin.c
@@ -1114,6 +1124,7 @@
./test/tcoords.c
./test/testabort_fail.sh.in
./test/testcheck_version.sh.in
+./test/testexternal_env.sh.in
./test/testerror.sh.in
./test/testlinks_env.sh.in
./test/test_filter_plugin.sh.in
@@ -1129,6 +1140,7 @@
./test/testmeta.c
./test/testswmr.sh.in
./test/testvdsswmr.sh.in
+./test/testvds_env.sh.in
./test/tfile.c
./test/tgenprop.c
./test/th5o.c
@@ -1168,6 +1180,7 @@
./test/use_disable_mdc_flushes.c
./test/use.h
./test/vds.c
+./test/vds_env.c
./test/vds_swmr.h
./test/vds_swmr_gen.c
./test/vds_swmr_reader.c
@@ -1535,11 +1548,9 @@
./tools/lib/io_timer.h
./tools/src/misc/Makefile.am
-./tools/src/misc/h5cc.in
./tools/src/misc/h5clear.c
./tools/src/misc/h5debug.c
./tools/src/misc/h5mkgrp.c
-./tools/src/misc/h5redeploy.in
./tools/src/misc/h5repart.c
./tools/test/misc/Makefile.am
./tools/test/misc/h5repart_gentest.c
@@ -1689,6 +1700,7 @@
./tools/testfiles/h5dump-help.txt
./tools/testfiles/non_existing.ddl
./tools/testfiles/packedbits.ddl
+./tools/testfiles/t128bit_float.h5
./tools/testfiles/taindices.h5
./tools/testfiles/tall-1.ddl
./tools/testfiles/tall-2.ddl
@@ -2902,6 +2914,32 @@
./java/src/jni/h5oImp.h
./java/src/jni/h5pImp.c
./java/src/jni/h5pImp.h
+./java/src/jni/h5pACPLImp.c
+./java/src/jni/h5pACPLImp.h
+./java/src/jni/h5pDAPLImp.c
+./java/src/jni/h5pDAPLImp.h
+./java/src/jni/h5pDCPLImp.c
+./java/src/jni/h5pDCPLImp.h
+./java/src/jni/h5pDXPLImp.c
+./java/src/jni/h5pDXPLImp.h
+./java/src/jni/h5pFAPLImp.c
+./java/src/jni/h5pFAPLImp.h
+./java/src/jni/h5pFCPLImp.c
+./java/src/jni/h5pFCPLImp.h
+./java/src/jni/h5pGAPLImp.c
+./java/src/jni/h5pGAPLImp.h
+./java/src/jni/h5pGCPLImp.c
+./java/src/jni/h5pGCPLImp.h
+./java/src/jni/h5pLAPLImp.c
+./java/src/jni/h5pLAPLImp.h
+./java/src/jni/h5pLCPLImp.c
+./java/src/jni/h5pLCPLImp.h
+./java/src/jni/h5pOCPLImp.c
+./java/src/jni/h5pOCPLImp.h
+./java/src/jni/h5pOCpyPLImp.c
+./java/src/jni/h5pOCpyPLImp.h
+./java/src/jni/h5pStrCPLImp.c
+./java/src/jni/h5pStrCPLImp.h
./java/src/jni/h5plImp.c
./java/src/jni/h5plImp.h
./java/src/jni/h5rImp.c
@@ -3211,8 +3249,6 @@
./config/cmake/ConfigureChecks.cmake
./config/cmake/CPack.Info.plist.in
./config/cmake/CTestCustom.cmake
-./config/cmake/FindHDFJAVA.cmake.in
-./config/cmake/FindJNI.cmake
./config/cmake/H5cxx_config.h.in
./config/cmake/H5pubconf.h.in
./config/cmake/hdf5-config.cmake.in
@@ -3312,9 +3348,9 @@
./hl/tools/h5watch/CMakeTests.cmake
./src/CMakeLists.txt
./test/CMakeLists.txt
+./test/CMakePassthroughVOLTests.cmake
./test/CMakeTests.cmake
./test/CMakeVFDTests.cmake
-./test/CMakeVOLTests.cmake
./test/flushrefreshTest.cmake
./test/ShellTests.cmake
./testpar/CMakeLists.txt
@@ -3371,8 +3407,12 @@
./config/cmake/scripts/CTestScript.cmake
./config/cmake/scripts/HDF5config.cmake
./config/cmake/scripts/HDF5options.cmake
-./config/cmake/scripts/HPC/par-HDF5options.cmake
-./config/cmake/scripts/HPC/ser-HDF5options.cmake
+
+# CMake-specific HPC Scripts
+./config/cmake/scripts/HPC/sbatch-HDF5options.cmake
+./config/cmake/scripts/HPC/bsub-HDF5options.cmake
+./config/cmake/scripts/HPC/qsub-HDF5options.cmake
+./config/cmake/scripts/HPC/raybsub-HDF5options.cmake
# Files generated by autogen
./aclocal.m4
@@ -3387,6 +3427,7 @@
./c++/examples/Makefile.in
./c++/Makefile.in
./configure
+./bin/Makefile.in
./c++/src/Makefile.in
./c++/test/Makefile.in
./examples/Makefile.in
diff --git a/Makefile.am b/Makefile.am
index d58b1b4..d96ffe3 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -49,11 +49,6 @@ include $(top_srcdir)/config/commence.am
# Conditionals. These conditionals are defined during configure
# Define each variable to empty if it is not used to placate pmake
-if BUILD_PARALLEL_CONDITIONAL
- TESTPARALLEL_DIR =testpar
-else
- TESTPARALLEL_DIR=
-endif
if BUILD_CXX_CONDITIONAL
CXX_DIR =c++
else
@@ -74,9 +69,24 @@ if BUILD_HDF5_HL_CONDITIONAL
else
HDF5_HL_DIR=
endif
+if BUILD_TESTS_CONDITIONAL
+ TESTSERIAL_DIR =test
+else
+ TESTSERIAL_DIR=
+endif
+if BUILD_TESTS_PARALLEL_CONDITIONAL
+ TESTPARALLEL_DIR =testpar
+else
+ TESTPARALLEL_DIR=
+endif
+if BUILD_TOOLS_CONDITIONAL
+ TOOLS_DIR =tools
+else
+ TOOLS_DIR=
+endif
-SUBDIRS = src test $(TESTPARALLEL_DIR) tools . $(CXX_DIR) $(FORTRAN_DIR) \
- $(JAVA_DIR) $(HDF5_HL_DIR)
+SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) . \
+ $(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples java
# Some files generated during configure that should be cleaned
@@ -186,10 +196,11 @@ check-vfd:
fi; \
done
-# Run tests with different Virtual Object Layer Connectors.
-# Currently, only invoke check-vol in the test directory.
-check-vol:
- for d in src test; do \
+# Run tests with different passthrough Virtual Object Layer Connectors.
+# NOTE: Will only succeed with passthrough VOL connectors that use
+# the native VOL connector as the terminal connector.
+check-passthrough-vol:
+ for d in $(SUBDIRS); do \
if test $$d != .; then \
(cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
fi; \
diff --git a/README.txt b/README.txt
index 03e8dd7..64f1345 100644
--- a/README.txt
+++ b/README.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.11.4 currently under development
+HDF5 version 1.11.6 currently under development
------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
diff --git a/bin/Makefile.am b/bin/Makefile.am
new file mode 100644
index 0000000..a39b695
--- /dev/null
+++ b/bin/Makefile.am
@@ -0,0 +1,57 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# These are our main targets
+bin_SCRIPTS=h5redeploy
+
+# Tell automake to clean h5redeploy script
+CLEANFILES=h5redeploy
+
+# These were generated by configure. Remove them only when distclean.
+DISTCLEANFILES=h5cc
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# How to build h5redeploy script
+h5redeploy: h5redeploy.in
+ @cp $(srcdir)/$@.in $@
+
+# h5cc needs custom install and uninstall rules, since it may be
+# named h5pcc if hdf5 is being built in parallel mode.
+if BUILD_PARALLEL_CONDITIONAL
+ H5CC_NAME=h5pcc
+else
+ H5CC_NAME=h5cc
+endif
+
+$(DESTDIR)$(bindir):
+ echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
+ $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1;
+
+install-exec-local: $(DESTDIR)$(bindir)
+ @$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
+uninstall-local:
+ @$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/bin/batch/cori_ctestP.sl.in.cmake b/bin/batch/cori_ctestP.sl.in.cmake
deleted file mode 100644
index 6aa4916..0000000
--- a/bin/batch/cori_ctestP.sl.in.cmake
+++ /dev/null
@@ -1,17 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C haswell
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestP
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/cori_ctestS.sl.in.cmake b/bin/batch/cori_ctestS.sl.in.cmake
deleted file mode 100644
index cf68826..0000000
--- a/bin/batch/cori_ctestS.sl.in.cmake
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C haswell
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD >& ctestS.out
-echo "Done running $CMD"
diff --git a/bin/batch/cori_knl_ctestP.sl.in.cmake b/bin/batch/cori_knl_ctestP.sl.in.cmake
deleted file mode 100644
index 90dd52a..0000000
--- a/bin/batch/cori_knl_ctestP.sl.in.cmake
+++ /dev/null
@@ -1,17 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C knl,quad,cache
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestP
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/cori_knl_ctestS.sl.in.cmake b/bin/batch/cori_knl_ctestS.sl.in.cmake
deleted file mode 100644
index 7db4483..0000000
--- a/bin/batch/cori_knl_ctestS.sl.in.cmake
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C knl,quad, cache
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD >& ctestS.out
-echo "Done running $CMD"
diff --git a/bin/batch/ctest.qsub.in.cmake b/bin/batch/ctest.qsub.in.cmake
new file mode 100755
index 0000000..702fca7
--- /dev/null
+++ b/bin/batch/ctest.qsub.in.cmake
@@ -0,0 +1,21 @@
+#!/bin/bash -l
+if [ $# -gt 0 ]; then
+ SUMMARY_FILE=$1
+fi
+ACCOUNT_ID=@ACCOUNT_ID@
+
+echo "Run parallel test command. Test output will be in build/${SUMMARY_FILE}"
+CTEST_CMD=`which ctest`
+
+#SKIPTESTS <<KEYWORD:script inserts list of skips tests here -- don't remove>>
+
+cd @HDF5_BINARY_DIR@
+if [[ $SUMMARY_FILE == *"ctestS"* ]]; then
+ CMD="${CTEST_CMD} . -E MPI_TEST_ -C Release -j 32 -T test"
+else
+ CMD="${CTEST_CMD} . -R MPI_TEST_ ${SKIP_TESTS} -C Release -T test"
+fi
+
+qsub -t 60 -n 1 -q debug-flat-quad -A ${ACCOUNT_ID} ${CMD} >& ${SUMMARY_FILE}
+
+echo "Done running ctest parallel command."
diff --git a/bin/batch/ctestP.lsf.in.cmake b/bin/batch/ctestP.lsf.in.cmake
index 2777f39..3fdd5ce 100644
--- a/bin/batch/ctestP.lsf.in.cmake
+++ b/bin/batch/ctestP.lsf.in.cmake
@@ -14,6 +14,6 @@
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
-ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."
diff --git a/bin/batch/ctestP.sl.in.cmake b/bin/batch/ctestP.sl.in.cmake
index 9fed14d..6399de7 100644
--- a/bin/batch/ctestP.sl.in.cmake
+++ b/bin/batch/ctestP.sl.in.cmake
@@ -8,9 +8,7 @@
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
+echo "Done running ctestP.sl"
diff --git a/bin/batch/ctestS.lsf.in.cmake b/bin/batch/ctestS.lsf.in.cmake
index 7ef5af5..a01d39b 100644
--- a/bin/batch/ctestS.lsf.in.cmake
+++ b/bin/batch/ctestS.lsf.in.cmake
@@ -11,7 +11,7 @@
cd @HDF5_BINARY_DIR@
echo "Run command. Test output will be in build/ctestS.out"
-ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
+ctest . -E MPI_TEST_ -C Release -j 32 -T test >& ctestS.out
##$CMD >& ctestS.out
echo "Done running command."
diff --git a/bin/batch/ctestS.sl.in.cmake b/bin/batch/ctestS.sl.in.cmake
index 98c1bcd..4f96bb9 100644
--- a/bin/batch/ctestS.sl.in.cmake
+++ b/bin/batch/ctestS.sl.in.cmake
@@ -8,7 +8,7 @@
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
diff --git a/bin/batch/knl_ctestP.sl.in.cmake b/bin/batch/knl_ctestP.sl.in.cmake
index 5c7c83f..f985fbb 100644
--- a/bin/batch/knl_ctestP.sl.in.cmake
+++ b/bin/batch/knl_ctestP.sl.in.cmake
@@ -6,13 +6,11 @@
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
+#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
#run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
echo "Done running $CMD"
diff --git a/bin/batch/knl_ctestS.sl.in.cmake b/bin/batch/knl_ctestS.sl.in.cmake
index 0dae31f..af6353b 100644
--- a/bin/batch/knl_ctestS.sl.in.cmake
+++ b/bin/batch/knl_ctestS.sl.in.cmake
@@ -9,7 +9,7 @@
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
diff --git a/bin/batch/ray_ctestP.lsf.in.cmake b/bin/batch/ray_ctestP.lsf.in.cmake
index 6b5316a..7067a65 100644
--- a/bin/batch/ray_ctestP.lsf.in.cmake
+++ b/bin/batch/ray_ctestP.lsf.in.cmake
@@ -15,6 +15,6 @@
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
-ctest . -R 'TEST_PAR|PH5DIFF|PERFORM|ph5example' -E t_cache_image -C Release -T test >& ctestP.out
+ctest . -R 'MPI_TEST_' -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."
diff --git a/bin/batch/ray_ctestS.lsf.in.cmake b/bin/batch/ray_ctestS.lsf.in.cmake
index d23a513..da20438 100644
--- a/bin/batch/ray_ctestS.lsf.in.cmake
+++ b/bin/batch/ray_ctestS.lsf.in.cmake
@@ -11,7 +11,7 @@
cd @HDF5_BINARY_DIR@
echo "Run command. Test output will be in build/ctestS.out"
-ctest . -E 'TEST_PAR|PH5DIFF|PERFORM|ph5example' -C Release -j 32 -T test >& ctestS.out
+ctest . -E 'MPI_TEST_' -C Release -j 32 -T test >& ctestS.out
##$CMD >& ctestS.out
echo "Done running command."
diff --git a/bin/checkposix b/bin/checkposix
index 7ab741c..30128e3 100755
--- a/bin/checkposix
+++ b/bin/checkposix
@@ -13,101 +13,165 @@ require 5.003;
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
-# Robb Matzke, matzke@llnl.gov
-# 30 Aug 1997
+# Dana Robinson
+# Spring 2019
+# (Original by Robb Matzke)
#
-# Purpose: Given the names of C source files this script will print the
-# file name, line number, and function name of any function that
-# doesn't begin with the letter `h' or `H' as stipulated by the
-# HDF5 programming style guide.
+# Purpose: Given the names of C source files this script will print the
+# file name, line number, and function name of any function that
+# doesn't begin with the letter 'h' or 'H' as stipulated by the
+# HDF5 programming style guide.
#
-# Emacs users can run this script as the compile command and
-# use `next-error' (usually bound to M-`) to find each name
-# violation.
-
-if(<>) {
- if($ARGV =~ /\//) {
- ($filename) = ($ARGV =~ /^.*\/([A-Za-z0-9_]*)\.c$/);
- } else {
- ($filename) = ($ARGV =~ /([A-Za-z0-9_]*)\.c$/);
+# Emacs users can run this script as the compile command and
+# use 'next-error' (usually bound to M-`) to find each name
+# violation.
+
+use File::Basename;
+
+# Loop over all files passed to the function
+foreach $arg (@ARGV) {
+
+ # Get the filename from the path
+ $filename = fileparse($arg);
+
+ # Skip files that don't include H5private.h
+ # H5system. has to be inspected by hand since it wraps POSIX files
+ #
+ # H5detect and H5make_libsettings are created before the library exists
+ # so calls that link to function replacements won't work. We'll ignore
+ # it here.
+ #
+ # If a user specifies one file, process it no matter what so people
+ # can inspect files we normally skip (like H5system.c).
+ if($#ARGV gt 0 and $filename =~ /H5FDmulti|H5FDstdio|H5VLpassthru|H5system|H5detect|H5make_libsettings/) {
+ print "$filename is exempt from using Standard library macro wrappers\n";
+ next;
}
- if($filename =~ /H5FDmulti|H5FDstdio/) {
- print "$ARGV is exempt from using Standard library macro wrappers\n";
- } else {
- while (<>) {
-
- # Get rid of comments by removing the inside part.
- s|/\*.*?\*/||g;
- if ($in_comment) {
- if (/\*\//) {
- s|.*?\*/||;
- $in_comment = 0;
- } else {
- $_="\n";
- }
- } elsif (m|/\*|) {
- s|/\*.*||;
- $in_comment = 1;
- }
-
- # Get rid of string constants if they begin and end on this line.
- s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
-
- # Get rid of preprocessor directives
- s/^\#.*//;
-
- # Skip callbacks invoked as methods in a struct
- next if $_ =~ /\b(\)?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
-
- # Now find all function calls on this line which don't start with 'H'
- while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
- $_ = $';
+ # Open the file
+ open(my $fh, "<", $arg) or do {
+ warn "NOTE: Unable to open $arg: !$\n";
+ next;
+ };
+
+ # Loop over all lines in the file to find undecorated functions
+ while (<$fh>) {
+
+ # Get rid of comments by removing the inside part.
+ s|/\*.*?\*/||g;
+ if ($in_comment) {
+ if (/\*\//) {
+ s|.*?\*/||;
+ $in_comment = 0;
+ } else {
+ $_="\n";
+ }
+ } elsif (m|/\*|) {
+ s|/\*.*||;
+ $in_comment = 1;
+ }
+
+ # Get rid of string constants if they begin and end on this line.
+ s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
+
+ # Get rid of preprocessor directives
+ s/^\#.*//;
+
+ # Skip callbacks invoked as methods in a struct
+ next if $_ =~ /\b(\)?]?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
+
+ # Now find all function calls on this line which don't start with 'H'
+ while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
+ $_ = $';
- # Ignore C statements that look sort of like function
- # calls.
- next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
-
- # Ignore things that get misdetected because of the simplified
- # parsing that takes place here.
- next if $name =~ /^(int|herr_t|_term_interface)$/;
-
- # These are really HDF5 functions/macros even though they don't
- # start with `h' or `H'.
- next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
- next if $name =~ /^(BEGIN|END)_FUNC$/;
- next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
- next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
- next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
- next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
- next if $name =~ /^(UNIQUE_MEMBERS)$/;
- next if $name =~ /^addr_defined$/;
-
- # These functions/macros are exempt.
- next if $name =~ /^(main|[fs]?printf|va_(start|arg|end))$/;
-
- # These are Windows system calls. Ignore them.
- next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
- next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
-
- # These are MPI function calls. Ignore them.
- next if $name =~ /^(MPI_|MPE_)/;
-
- # These are POSIX threads function calls. Ignore them.
- next if $name =~ /^pthread_/;
-
- # These are Windows threads function calls. Ignore them.
- next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
-
- # These are zlib & szlib function calls. Ignore them.
- next if $name =~ /^(inflate|SZ_)/;
- next if $name =~ /^compress2$/;
-
- print "$ARGV:$.: $name\n";
- }
-
- } continue {
- close ARGV if eof; # reset line number
+ # Ignore C statements that look sort of like function
+ # calls.
+ next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
+
+ # Ignore things that get misdetected because of the simplified
+ # parsing that takes place here.
+ next if $name =~ /^(int|herr_t|_term_interface|_term_package)$/;
+
+ # These are really HDF5 functions/macros even though they don't
+ # start with `h' or `H'.
+ next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
+ next if $name =~ /^(BEGIN|END)_FUNC$/;
+ next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
+ next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
+ next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
+ next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
+ next if $name =~ /^(UNIQUE_MEMBERS|S_ISDIR)$/;
+ next if $name =~ /^addr_defined$/;
+
+ # These functions/macros are exempt.
+ # op, cb, and OP are often spuriously flagged so ignore them.
+ next if $name =~ /^(main|op|cb|OP)$/;
+
+ # This often appears in preprocessor lines that span multiple lines
+ next if $name =~ /^(defined)$/;
+
+ # These are Windows system calls. Ignore them.
+ next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
+ next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
+ next if $name =~ /^(DeleteCriticalSection|TlsFree|TlsGetValue|CreateThread)$/;
+ next if $name =~ /^(ExpandEnvironmentStringsA|LockFileEx|UnlockFileEx)$/;
+ next if $name =~ /^(DllMain|LocalAlloc|LocalFree)$/;
+ next if $name =~ /^(FindFirstFileA|FindNextFileA)$/;
+ next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
+
+ # These are MPI function calls. Ignore them.
+ next if $name =~ /^(MPI_|MPE_)/;
+
+ # These are POSIX threads function calls. Ignore them.
+ next if $name =~ /^pthread_/;
+
+ # These are zlib & szlib function calls. Ignore them.
+ next if $name =~ /^(inflate|SZ_)/;
+ next if $name =~ /^compress2$/;
+
+ # These is an H5Dfill function. Ignore it in this file.
+ if($filename =~ /H5Dfill/) {
+ next if $name =~ /^(alloc_func)$/;
+ }
+
+ # These are H5Zscaleoffset functions. Ignore them in this file.
+ if($filename =~ /H5Zscaleoffset/) {
+ next if $name =~ /^(pow_fun|round_fun|abs_fun|lround_fun|llround_fun)$/;
+ }
+
+ # TESTING (not comprehensive - just noise reduction)
+
+ # Test macros and functions (testhdf5.h)
+ next if $name =~ /^(AddTest|TestErrPrintf|TestSummary|TestCleanup|TestShutdown)$/;
+ next if $name =~ /^(CHECK|CHECK_PTR|CHECK_PTR_NULL|CHECK_PTR_EQ|CHECK_I)$/;
+ next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY|TYPE|MESSAGE|ERROR)$/;
+
+ # Test macros and functions (h5test.h)
+ next if $name =~ /^(TESTING|PASSED|SKIPPED|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR)$/;
+ next if $name =~ /^(GetTestExpress)$/;
+
+ # Ignore functions that start with test_ or check_
+ next if $name =~ /^test_/;
+ next if $name =~ /^check_/;
+
+ # Ignore functions that start with h5_
+ next if $name =~ /^h5_/;
+
+ # Ignore usage functions
+ next if $name =~ /^usage$/;
+
+ print "$filename:$.: $name\n";
}
+
}
+
+ # Close the file
+ close($fh);
+}
+
+if($#ARGV gt 0) {
+ print "\n";
+ print "NOTE:\n";
+ print "If any files were skipped due to being exempt, you can inspect them manually\n";
+ print "by using this script on them one at a time, which will always process the file.\n";
}
diff --git a/tools/src/misc/h5cc.in b/bin/h5cc.in
index 9c4e3ca..9c4e3ca 100644
--- a/tools/src/misc/h5cc.in
+++ b/bin/h5cc.in
diff --git a/tools/src/misc/h5redeploy.in b/bin/h5redeploy.in
index 242459a..242459a 100644
--- a/tools/src/misc/h5redeploy.in
+++ b/bin/h5redeploy.in
diff --git a/bin/snapshot b/bin/snapshot
index 5900728..1218caa 100755
--- a/bin/snapshot
+++ b/bin/snapshot
@@ -130,10 +130,10 @@ DISPLAYUSAGE()
set -
cat <<EOF
Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [help]
- [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
- [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
- [check-vol]
- [exec <command>] [module-load <module-list>] [op-configure <option>]
+ [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
+ [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
+ [check-passthrough-vol]
+ [exec <command>] [module-load <module-list>] [op-configure <option>]
[--<option>]
all: Run all commands (checkout, test & release)
[Default is all]
@@ -150,8 +150,8 @@ Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [h
setenv <name> <value>:
Set environment variable <name> to <value>.
setenvN <N> <name> <value> ...:
- Set environment variable with <N> values.
- E.g., setenvN 3 x a b c is same as setenv x="a b c".
+ Set environment variable with <N> values.
+ E.g., setenvN 3 x a b c is same as setenv x="a b c".
srcdir: Use srcdir option (does not imply other commands)
"snapshot srcdir" is equivalent to "snapshot srcdir all"
"snapshot srcdir checkout" is equivalent to "snapshot checkout"
@@ -169,9 +169,12 @@ Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [h
Use <dir> as the release directory
[Default is $ReleaseDir_default]
check-vfd:
- Run make check-vfd instead of just make check.
- check-vol:
- Run make check-vol instead of just make check.
+ Run make check-vfd instead of just make check.
+ check-passthrough-vol:
+ Run make check-passthrough-vol instead of just make check.
+ NOTE: Will only succeed with passthrough VOL connectors
+ that use the native VOL connector as the terminal
+ connector.
exttest <testscript>;
Run testscript;
exec <command>:
@@ -425,8 +428,8 @@ while [ $# -gt 0 ] ; do
check-vfd)
CHECKVAL=check-vfd
;;
- check-vol)
- CHECKVAL=check-vol
+ check-passthrough-vol)
+ CHECKVAL=check-passthrough-vol
;;
module-load)
shift
diff --git a/bin/warnhist b/bin/warnhist
new file mode 100755
index 0000000..5750c77
--- /dev/null
+++ b/bin/warnhist
@@ -0,0 +1,514 @@
+#!/usr/bin/perl -w
+require 5.003;
+
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Quincey Koziol, koziol@hdfgroup.org
+# 9 Aug 2013
+#
+# Purpose: Given an input file containing the output from a build of the
+# library, gather the file names and line numbers, alias
+# identical types of warnings together into a single bin and
+# report the number of warnings for each type of warning, each file
+# and the total count of warnings
+
+# Perl modules/settings
+use strict;
+use Getopt::Std;
+
+# Global variables, for accumulating information
+my $totalcount = 0;
+my %warn_count = ();
+my $warncount;
+my %warn_file = ();
+my %warn_file_line = ();
+my %file_count = ();
+my $filecount;
+my $ignorecount = 0;
+my @ignorenames;
+my %ignored_files = ();
+my %warn_file_indices = ();
+my %file_warn_indices = ();
+my %file_warn = ();
+my %file_warn_line = ();
+my $current_warning = 0;
+my $current_file = 0;
+my $warn_index;
+my $last_c_name;
+my $last_fort_name;
+my $last_fort_line;
+
+# declare the Perl command line flags/options we want to allow
+my %options=();
+getopts("FWht:w:f:i:l", \%options);
+
+# Display usage, if requested
+if($options{h}) {
+ print "Usage: 'warnhist [-h] [-t <prefix>] [-w <n>] [-W] [-f <n>] [-F] [-l] [-i <name list> [file]'\n";
+ print "\t-h\tDisplay this usage\n";
+ print "\t-t <prefix>\tTrim pathname prefix from filenames, <prefix>\n";
+ print "\t-w <n>\tDisplay files for a given warning index list, <n>\n";
+ print "\t\t<n> can be a single value, a range, or a comma separated list\n";
+ print "\t\tFor example: '0' or '0,4' or '8-10' or '0,2-4,8-10,13'\n";
+ print "\t-W\tDisplay files for all warnings\n";
+ print "\t-f <n>\tDisplay warnings for a given file index list, <n>\n";
+ print "\t\t<n> can be a single value, a range, or a comma separated list\n";
+ print "\t\tFor example: '0' or '0,4' or '8-10' or '0,2-4,8-10,13'\n";
+ print "\t-F\tDisplay warnings for all files\n";
+ print "\t-l\tDisplay line nunbers for file/warning\n";
+ print "\t-i <name list>\tIgnore named files, <name list>\n";
+ print "\t\t<name list> is a comma separated list, with no spaces\n";
+ print "\t\tFor example: 'H5LTparse' or 'H5LTparse,H5LTanalyze'\n";
+ print "\tfile\tFilename containing build output\n";
+ print "\t\tIf no file is given, standard input is used.\n";
+ exit;
+}
+
+# Parse list of file names to ignore
+if(exists $options{i}) {
+ @ignorenames = split /,/, $options{i};
+#print @ignorenames;
+}
+
+# Parse list of warning indices to expand file names
+if(exists $options{w}) {
+ my @tmp_indices;
+
+ @tmp_indices = split /,/, $options{w};
+#print @tmp_indices;
+ for my $x (@tmp_indices) {
+#print "x = '$x'\n";
+ if($x =~ /\-/) {
+ my $start_index;
+ my $end_index;
+
+#print "matched = '$x'\n";
+ ($start_index, $end_index) = split /\-/, $x;
+#print "start_index = '$start_index', end_index = '$end_index'\n";
+ for my $y ($start_index..$end_index) {
+#print "y = '$y'\n";
+ if(!(exists $warn_file_indices{$y})) {
+ $warn_file_indices{$y} = $y;
+ }
+ }
+ }
+ else {
+ if(!(exists $warn_file_indices{$x})) {
+ $warn_file_indices{$x} = $x;
+ }
+ }
+ }
+#foreach (sort keys %warn_file_indices) {
+# print "$_ : $warn_file_indices{$_}\n";
+#}
+}
+
+# Parse list of file indices to expand warnings
+if(exists $options{f}) {
+ my @tmp_indices;
+
+ @tmp_indices = split /,/, $options{f};
+#print @tmp_indices;
+ for my $x (@tmp_indices) {
+#print "x = '$x'\n";
+ if($x =~ /\-/) {
+ my $start_index;
+ my $end_index;
+
+#print "matched = '$x'\n";
+ ($start_index, $end_index) = split /\-/, $x;
+#print "start_index = '$start_index', end_index = '$end_index'\n";
+ for my $y ($start_index..$end_index) {
+#print "y = '$y'\n";
+ if(!(exists $file_warn_indices{$y})) {
+ $file_warn_indices{$y} = $y;
+ }
+ }
+ }
+ else {
+ if(!(exists $file_warn_indices{$x})) {
+ $file_warn_indices{$x} = $x;
+ }
+ }
+ }
+#foreach (sort keys %warn_file_indices) {
+# print "$_ : $warn_file_indices{$_}\n";
+#}
+}
+
+PARSE_LINES:
+while (<>) {
+ my $name;
+ my $line;
+ my $prev_line;
+ my $toss;
+ my $offset;
+ my $warning;
+ my $extra;
+
+ # Retain last FORTRAN compile line, which comes a few lines before warning
+ if($_ =~ /.*\.[fF]90:.*/) {
+ ($last_fort_name, $last_fort_line, $toss) = split /\:/, $_;
+ ($last_fort_line, $toss) = split /\./, $last_fort_line;
+ }
+
+ # Retain last C compile line, which possibly comes a few lines before warning
+ if($_ =~ /.*[A-Za-z0-9_]\.c:.*/) {
+ ($last_c_name, $toss) = split /\:/, $_;
+ }
+
+ next if $_ !~ /[Ww]arning:/;
+
+ # Skip warnings from linker
+ next if $_ =~ /ld: warning:/;
+
+ # Check for weird formatting of warning message
+ if($_ =~ /^cc1: warning:.*/) {
+ $name = $last_c_name;
+ $line = "??";
+ ($toss, $toss, $warning, $extra) = split /\:/, $_;
+ # Check for FORTRAN warning output
+ } elsif($_ =~ /^Warning:.*/) {
+ $name = $last_fort_name;
+ $line = $last_fort_line;
+ ($toss, $warning, $extra) = split /\:/, $_;
+#print "1:",$.,":",$_;
+# $_ = <>;
+#print "2:",$.,":",$_;
+# if($_ =~ /^\sFC.*/) {
+# $_ = <>;
+#print "3:",$.,":",$_;
+# }
+# ($name, $line, $toss) = split /\:/, $_;
+#print "4:","'",$name,"'","-","'",$line,"'","\n";
+ # Check for improperly parsed filename or line
+ if($name =~ /^$/) {
+ print "Filename is a null string! Input line #$. is: '$_'";
+ next
+ }
+ if($line =~ /^$/) {
+ print "Line is a null string! Input line #$. is: '$_'";
+ next
+ }
+ } else {
+ # Check for 'character offset' field
+ if($_ =~ /^.*[0-9]+\:[0-9]+\:/) {
+ ($name, $line, $offset, $toss, $warning, $extra) = split /\:/, $_;
+ } else {
+ ($name, $line, $toss, $warning, $extra) = split /\:/, $_;
+ }
+ }
+
+ # Check for extra ':' followed by more text in original warning string,
+ # and append the ':' and text back onto the parsed warning
+ # (Use 'length $extra' idiom to avoid warning when $extra is undefined)
+ if(length $extra ) {
+ $warning = join ':', $warning, $extra;
+ }
+
+ # Trim leading '..' paths from filename
+ while($name =~ /^\.\.\//) {
+ $name =~ s/^\.\.\///g;
+ }
+
+ # Check for trimming prefix
+ if((exists $options{t}) && ($name =~ /$options{t}/)) {
+ $name =~ s/^$options{t}\///g;
+ }
+
+ # Check for ignored file
+ if(exists $options{i}) {
+ for my $x (@ignorenames) {
+#print "x = '$x'\n";
+ if($name =~ /$x/) {
+# print "matched name = '$name'\n";
+ $ignorecount++;
+ if(!(exists $ignored_files{$name})) {
+ $ignored_files{$name} = $name;
+ }
+ next PARSE_LINES;
+ }
+ }
+ }
+
+ # Check for improperly parsed warning (usually an undefined warning string)
+ if(!defined $warning) {
+ print "Warning Undefined! Input line is: '$_'";
+ next
+ }
+
+ # Get rid of leading & trailing whitespace
+ $warning =~ s/^\s//g;
+ $warning =~ s/\s$//g;
+
+ # Check for improperly parsed warning
+ if($warning =~ /^$/) {
+ print "Warning is a null string! Input line is: '$_'";
+ next
+ }
+
+ # Convert all quotes to '
+ $warning =~ s/‘/'/g;
+ $warning =~ s/’/'/g;
+
+ # Skip supplemental warning message
+ next if $warning =~ /near initialization for/;
+
+ # Skip GCC warning that should be a note
+ next if $_ =~ /\(this will be reported only once per input file\)/;
+
+ # Eliminate "{aka <some type>}" info
+ if($warning =~ /\s\{aka [A-Za-z_0-9\s\*]*\}'/) {
+ $warning =~ s/\s\{aka [A-Za-z_0-9\s\*]*\}//g;
+ }
+
+ # Genericize warnings
+ if($warning =~ /variable '[A-Za-z_0-9]*' set but not used.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /unused variable '[A-Za-z_0-9]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /implicit conversion from '[A-Za-z_0-9]*' to '[A-Za-z_0-9]*' when passing argument to function.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /implicit conversion from '[A-Za-z_0-9]*' to '[A-Za-z_0-9]*' to match other operand of binary expression.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' from '[A-Za-z_0-9\s]*' may alter its value.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' from '[A-Za-z_0-9\s]*' may change the sign of the result.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9\s]*' discards '[A-Za-z_0-9\s]*'.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /'[A-Za-z_0-9\s]*' defined but not used.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /cast discards '[A-Za-z_0-9\(\)\s]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9\(\)\s]*'/'-'/g;
+ } elsif($warning =~ /size of '[A-Za-z_0-9\(\)\s\*]*' is [0-9]* bytes.*/) {
+ $warning =~ s/is [0-9]* bytes/is - bytes/g;
+ $warning =~ s/'[A-Za-z_0-9\(\)\s\*]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9\(\)\s]*' from incompatible.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9\(\)\s]*'/'-'/g;
+ } elsif($warning =~ /stack usage is [0-9]* bytes.*/) {
+ $warning =~ s/stack usage is [0-9]*/stack usage is -/g;
+ } elsif($warning =~ /stack usage might be [0-9]* bytes.*/) {
+ $warning =~ s/stack usage might be [0-9]*/stack usage might be -/g;
+ } elsif($warning =~ /the frame size of [0-9]* bytes is larger than [0-9]* bytes.*/) {
+ $warning =~ s/the frame size of [0-9]* bytes is larger than [0-9]*/the frame size of - bytes is larger than -/g;
+ } elsif($warning =~ /enumeration value '[A-Za-z_0-9\s]*' not handled in switch.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /"[A-Za-z_0-9\s]*" is not defined.*/) {
+ $warning =~ s/"[A-Za-z_0-9\s]*"/"-"/g;
+ } elsif($warning =~ /macro "[A-Za-z_0-9\s]*" is not used.*/) {
+ $warning =~ s/"[A-Za-z_0-9\s]*"/"-"/g;
+ } elsif($warning =~ /unused parameter '[A-Za-z_0-9\s]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /request for implicit conversion from '[A-Za-z_0-9\s\*]*' to '[A-Za-z_0-9\s\<\>\[\]\(\)\*]*' not permitted in C\+\+.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s\*\<\>\[\]\(\)]*'/'-'/g;
+ } elsif($warning =~ /no previous prototype for '[A-Za-z_0-9\s]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /declaration of '[A-Za-z_0-9\s]*' shadows a previous local.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /cast from function call of type '[A-Za-z_0-9\s\*]*' to non-matching type '[A-Za-z_0-9\s\*]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s\*]*'/'-'/g;
+ } elsif($warning =~ /'[A-Za-z_0-9\s]*' declared '[A-Za-z_0-9\s]*' but never defined.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /declaration of '[A-Za-z_0-9\s]*' shadows a global declaration.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /typedef '[A-Za-z_0-9\s]*' locally defined but not used.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /format '%[a-z]*' expects argument of type '[A-Za-z_0-9\s\*]*', but argument [0-9]* has type '[A-Za-z_0-9\s\*\(\),]*'.*/) {
+ $warning =~ s/but argument [0-9]*/but argument -/g;
+ $warning =~ s/'[%A-Za-z_0-9\s\*\(\),]*'/'-'/g;
+ } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' alters '[A-Za-z_0-9\s]*' constant value.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+ } elsif($warning =~ /to be safe all intermediate pointers in cast from '[A-Za-z_0-9\s\*]*' to '[A-Za-z_0-9\s\*]*' must be 'const' qualified.*/) {
+ $warning =~ s/'[A-Za-z_0-9\s\*]*'/'-'/g;
+ } elsif($warning =~ /identifier '[A-Za-z_0-9]*' conflicts with C\+\+ keyword.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /nested extern declaration of '[A-Za-z_0-9]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Procedure '[A-Za-z_0-9]*' called with an implicit interface.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Unused dummy argument '[A-Za-z_0-9]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Unused parameter '[A-Za-z_0-9]*' declared at.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Unused variable '[A-Za-z_0-9]*' declared at.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Inequality comparison for REAL\([0-9]*\) at.*/) {
+ $warning =~ s/REAL\([0-9]*\)/REAL\(-\)/g;
+ } elsif($warning =~ /Possible change of value in conversion from INTEGER\([0-9]*\) to (INTEGER|REAL)\([0-9]*\) at.*/) {
+ $warning =~ s/INTEGER\([0-9]*\)/INTEGER\(-\)/g;
+ $warning =~ s/REAL\([0-9]*\)/REAL\(-\)/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' with different width due to prototype.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as unsigned due to prototype.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' discards qualifiers from pointer target type.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as floating rather than integer due to prototype.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as 'float' rather than 'double' due to prototype.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/;
+ } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as signed due to prototype.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /format '\%[A-Za-z0-9]*' expects type '[a-z][a-z\s\*]*', but argument [0-9]* has type '[a-z][a-z\(\)_,\s\*]*'.*/) {
+ $warning =~ s/but argument [0-9]*/but argument -/g;
+ $warning =~ s/'\%[A-Za-z0-9]*'/'\%-'/g;
+ $warning =~ s/'[a-z][a-z_,\s\*\(\)]*'/'-'/g;
+ } elsif($warning =~ /implicit declaration of function '[A-Za-z_0-9]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /'[A-Za-z_\.\[\]0-9]*' may be used uninitialized in this function.*/) {
+ $warning =~ s/'[A-Za-z_\.\[\]0-9]*'/'-'/g;
+ } elsif($warning =~ /redundant redeclaration of '[A-Za-z_0-9]*'.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /declaration of '[A-Za-z_0-9]*' shadows a parameter.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /ISO C90 does not support the '[a-z]*' gnu_scanf length modifier.*/) {
+ $warning =~ s/'[a-z]*'/'-'/g;
+ } elsif($warning =~ /ISO C90 does not support the '[a-z]*' gnu_printf length modifier.*/) {
+ $warning =~ s/'[a-z]*'/'-'/g;
+ } elsif($warning =~ /ISO C90 does not support the '%[a-z]*' gnu_printf format.*/) {
+ $warning =~ s/'%[a-z]*'/'%-'/g;
+ } elsif($warning =~ /string length '[0-9]*' is greater than the length.*/) {
+ $warning =~ s/string length '[0-9]*' is/string length '-' is/g;
+ } elsif($warning =~ /enum conversion when passing argument [0-9]* of '[A-Za-z_0-9]*' is invalid.*/) {
+ $warning =~ s/passing argument [0-9]*/passing argument -/g;
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /duplicate declaration of '[A-Za-z_0-9]*' is invalid in.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /Variable '[A-Za-z_0-9]*' at \([0-9]*\) is a dummy argument of the BIND\(C\) procedure '[A-Za-z_0-9]*' but may not be C interoperable.*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+ } elsif($warning =~ /Variable '[A-Za-z_0-9]*' at \([0-9]*\) may not be a C interoperable kind but it is BIND\(C\).*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+ } elsif($warning =~ /Component '[A-Za-z_0-9]*' in derived type '[A-Za-z_0-9]*' at \([0-9]*\) may not be C interoperable, even though derived type '[A-Za-z_0-9]*' is BIND\(C\).*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+ } elsif($warning =~ /function might be candidate for attribute '[A-Za-z_0-9]*' if it is known to return normally \[-Wsuggest-attribute=[A-Za-z_0-9]*\].*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/=[A-Za-z_0-9]*\]/=-\]/g;
+ } elsif($warning =~ /function might be candidate for attribute '[A-Za-z_0-9]*' \[-Wsuggest-attribute=[A-Za-z_0-9]*\].*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/=[A-Za-z_0-9]*\]/=-\]/g;
+ } elsif($warning =~ /passing argument [0-9]+ of '[A-Za-z_0-9]*' makes integer from pointer without a cast \[-Wint-conversion\].*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ } elsif($warning =~ /function '[A-Za-z_0-9]*' might be a candidate for '[A-Za-z_0-9]*' format attribute \[-Wsuggest-attribute=format\].*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /inlining failed in call to '[A-Za-z_0-9]*': call is unlikely and code size would grow \[-Winline\].*/) {
+ $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+ } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive writing between [0-9]+ and [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-overflow=\].*/) {
+ $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive writing between [0-9]+ and [0-9]+ bytes into a region of size between [0-9]+ and [0-9]+ \[-Wformat-overflow=\].*/) {
+ $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing between [0-9]+ and [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-truncation=\].*/) {
+ $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing up to [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-truncation=\].*/) {
+ $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing between [0-9]+ and [0-9]+ bytes into a region of size between [0-9]+ and [0-9]+ \[-Wformat-truncation=\].*/) {
+ $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+ $warning =~ s/[0-9]+/-/g;
+ }
+
+ # Increment count for [generic] warning
+ $warn_count{$warning}++;
+ $warn_file{$warning}{$name}++;
+ push(@{ $warn_file_line{$warning}{$name} }, $line);
+
+ # Increment count for filename
+ $file_count{$name}++;
+ $file_warn{$name}{$warning}++;
+ push(@{ $file_warn_line{$name}{$warning} }, $line);
+
+ # Increment total count of warnings
+ $totalcount++;
+
+# print "name = $name\n";
+# print "line = $line\n";
+# print "offset = $offset\n";
+# print "warning = \"$warning\"\n";
+}
+
+print "Total [non-ignored] warnings: $totalcount\n";
+print "Total ignored warnings: $ignorecount\n";
+$warncount = keys %warn_count;
+print "Total unique kinds of warnings: $warncount\n";
+$filecount = keys %file_count;
+print "Total files with warnings: $filecount\n\n";
+
+# Print warnings in decreasing frequency
+print "# of Warnings by frequency (file count)\n";
+print "=======================================\n";
+for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
+ printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file_line{$x}}), $x);
+ if((exists $options{W}) || (exists $options{w})) {
+ my $curr_index = $current_warning - 1;
+
+ if((exists $warn_file_indices{$curr_index}) && $curr_index == $warn_file_indices{$curr_index}) {
+ for my $y (sort {$warn_file{$x}{$b} <=> $warn_file{$x}{$a}} keys(%{$warn_file{$x}})) {
+ printf ("\t%4d - %s\n", $warn_file{$x}{$y}, $y);
+ if(exists $options{l}) {
+ printf ("\t\tLines: ");
+ for my $z ( @{ $warn_file_line{$x}{$y} } ) {
+ printf ("%s, ", $z);
+ }
+ printf("\n");
+ }
+ }
+ }
+ }
+}
+
+# Print warnings in decreasing frequency, by filename
+print "\n# of Warnings by filename (warning type)\n";
+print "========================================\n";
+for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
+ printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn_line{$x}}), $x);
+ if((exists $options{F}) || (exists $options{f})) {
+ my $curr_index = $current_file - 1;
+
+ if((exists $file_warn_indices{$curr_index}) && $curr_index == $file_warn_indices{$curr_index}) {
+ for my $y (sort {$file_warn{$x}{$b} <=> $file_warn{$x}{$a}} keys(%{$file_warn{$x}})) {
+ printf ("\t%4d - %s\n", $file_warn{$x}{$y}, $y);
+ if(exists $options{l}) {
+ printf ("\t\tLines: ");
+ for my $z ( @{ $file_warn_line{$x}{$y} } ) {
+ printf ("%s, ", $z);
+ }
+ printf("\n");
+ }
+ }
+ }
+ }
+}
+
+# Print names of files that were ignored
+print "\nIgnored filenames\n";
+print "=================\n";
+for my $x (sort keys(%ignored_files)) {
+ print "$x\n";
+}
+
diff --git a/c++/Makefile.am b/c++/Makefile.am
index 94fbefc..319ce6e 100644
--- a/c++/Makefile.am
+++ b/c++/Makefile.am
@@ -18,9 +18,21 @@
include $(top_srcdir)/config/commence.am
+if BUILD_TESTS_CONDITIONAL
+ TEST_DIR = test
+else
+ TEST_DIR=
+endif
+
## Only recurse into subdirectories if C++ interface is enabled.
if BUILD_CXX_CONDITIONAL
- SUBDIRS=src test
+ SUBDIRS=src $(TEST_DIR)
+
+# Test with just the native connector, with a single pass-through connector
+# and with a doubly-stacked pass-through.
+VOL_LIST = native "pass_through under_vol=0;under_info={}" \
+ "pass_through under_vol=505;under_info={under_vol=0;under_info={}}"
+
endif
DIST_SUBDIRS = src test examples
diff --git a/c++/examples/CMakeLists.txt b/c++/examples/CMakeLists.txt
index d3a18f2..2088019 100644
--- a/c++/examples/CMakeLists.txt
+++ b/c++/examples/CMakeLists.txt
@@ -34,17 +34,27 @@ set (tutr_examples
foreach (example ${examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
- target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
- target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
+ target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
+ target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (cpp_ex_${example} SHARED)
+ target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
endforeach ()
foreach (example ${tutr_examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
- target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
- target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
+ target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
+ target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (cpp_ex_${example} SHARED)
+ target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
endforeach ()
diff --git a/c++/examples/CMakeTests.cmake b/c++/examples/CMakeTests.cmake
index bd1f95b..58bdb68 100644
--- a/c++/examples/CMakeTests.cmake
+++ b/c++/examples/CMakeTests.cmake
@@ -26,7 +26,7 @@
SDSextendible.h5
Select.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (CPP_ex-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "CPP_ex-clear-objects")
@@ -46,7 +46,7 @@
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (CPP_ex_${example} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "CPP_ex_${example}")
@@ -66,7 +66,7 @@
h5tutr_groups.h5
h5tutr_subset.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (CPP_ex_tutr-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "CPP_ex_tutr-clear-objects")
@@ -86,7 +86,7 @@
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (CPP_ex_${example} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "CPP_ex_${example}")
diff --git a/c++/src/C2Cppfunction_map.htm b/c++/src/C2Cppfunction_map.htm
index b53ea15..2d779a3 100644
--- a/c++/src/C2Cppfunction_map.htm
+++ b/c++/src/C2Cppfunction_map.htm
@@ -7666,6 +7666,42 @@ normal'><span style='font-size:14.0pt;mso-bidi-font-size:11.0pt;line-height:
normal'><o:p>&nbsp;</o:p></p>
</td>
</tr>
+ <tr style='mso-yfti-irow:180'>
+ <td width=263 style='width:197.2pt;border:solid windowtext 1.0pt;border-top:
+ none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+ padding:0in 5.4pt 0in 5.4pt'>
+ <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height:
+ normal'>H5Fget_fileno</p>
+ </td>
+ <td width=474 valign=top style='width:355.2pt;border-top:none;border-left:
+ none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+ mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+ mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+ <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height:
+ normal'>unsigned long H5File::getFileNum()</p>
+ </td>
+ <td width=35 valign=top style='width:26.05pt;border-top:none;border-left:
+ none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+ mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+ mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+ <p class=MsoNormal align=center style='margin-bottom:0in;margin-bottom:.0001pt;
+ text-align:center;line-height:normal'><o:p>&nbsp;</o:p></p>
+ </td>
+ <td width=42 valign=top style='width:31.45pt;border-top:none;border-left:
+ none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+ mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+ mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+ <p class=MsoNormal align=center style='margin-bottom:0in;margin-bottom:.0001pt;
+ text-align:center;line-height:normal'><o:p>&nbsp;</o:p></p>
+ </td>
+ <td width=169 valign=top style='width:126.65pt;border-top:none;border-left:
+ none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+ mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+ mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+ <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height:
+ normal'><o:p>&nbsp;</o:p></p>
+ </td>
+ </tr>
<tr style='mso-yfti-irow:181'>
<td width=263 style='width:197.2pt;border:solid windowtext 1.0pt;border-top:
none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 945b352..8e7f8be 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -84,24 +84,26 @@ set (CPP_HDRS
${HDF5_CPP_SRC_SOURCE_DIR}/H5VarLenType.h
)
-add_library (${HDF5_CPP_LIB_TARGET} STATIC ${CPP_SOURCES} ${CPP_HDRS})
-target_include_directories(${HDF5_CPP_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-target_compile_definitions(${HDF5_CPP_LIB_TARGET}
- PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings
-)
-TARGET_C_PROPERTIES (${HDF5_CPP_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_CPP_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIB_TARGET}")
-H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_CPP_LIB_TARGET} PROPERTIES FOLDER libraries/cpp)
-set (install_targets ${HDF5_CPP_LIB_TARGET})
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_CPP_LIB_TARGET} STATIC ${CPP_SOURCES} ${CPP_HDRS})
+ target_include_directories (${HDF5_CPP_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ target_compile_definitions(${HDF5_CPP_LIB_TARGET}
+ PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings
+ )
+ TARGET_C_PROPERTIES (${HDF5_CPP_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_CPP_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIB_TARGET}")
+ H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_CPP_LIB_TARGET} PROPERTIES FOLDER libraries/cpp)
+ set (install_targets ${HDF5_CPP_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_CPP_LIBSH_TARGET} SHARED ${CPP_SOURCES} ${CPP_HDRS})
- target_include_directories(${HDF5_CPP_LIBSH_TARGET}
+ target_include_directories (${HDF5_CPP_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -136,7 +138,9 @@ if (HDF5_EXPORTED_TARGETS)
if (BUILD_SHARED_LIBS)
INSTALL_TARGET_PDB (${HDF5_CPP_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} cpplibraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_CPP_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} cpplibraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_CPP_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} cpplibraries)
+ endif ()
install (
TARGETS
@@ -163,7 +167,9 @@ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
set (_PKG_CONFIG_LIBS_PRIVATE)
-set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_CPP_LIB_CORENAME}")
+if (NOT ONLY_SHARED_LIBS)
+ set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_CPP_LIB_CORENAME}")
+endif ()
if (BUILD_SHARED_LIBS)
set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_CPP_LIB_CORENAME}")
endif ()
diff --git a/c++/src/H5File.cpp b/c++/src/H5File.cpp
index 719c1ba..b9ecded 100644
--- a/c++/src/H5File.cpp
+++ b/c++/src/H5File.cpp
@@ -580,6 +580,27 @@ hsize_t H5File::getFileSize() const
}
//--------------------------------------------------------------------------
+// Function: H5File::getFileNum
+///\brief Returns the file number of the HDF5 file.
+///\return File number
+///\exception H5::FileIException
+///\par Description
+/// This function is called after an existing file is opened in
+/// order to retrieve the unique 'file number' for the file.
+// Programmer Quincey Koziol - April 13, 2019
+//--------------------------------------------------------------------------
+unsigned long H5File::getFileNum() const
+{
+ unsigned long fileno = 0;
+ herr_t ret_value = H5Fget_fileno(id, &fileno);
+ if (ret_value < 0)
+ {
+ throw FileIException("H5File::getFileNum", "H5Fget_fileno failed");
+ }
+ return (fileno);
+}
+
+//--------------------------------------------------------------------------
// Function: H5File::getId
///\brief Get the id of this file
///\return File identifier
diff --git a/c++/src/H5File.h b/c++/src/H5File.h
index 332685e..1b1227f 100644
--- a/c++/src/H5File.h
+++ b/c++/src/H5File.h
@@ -69,6 +69,9 @@ class H5_DLLCPP H5File : public Group {
// Returns the file size of the HDF5 file.
hsize_t getFileSize() const;
+ // Returns the 'file number' of the HDF5 file.
+ unsigned long getFileNum() const;
+
// Determines if a file, specified by its name, is in HDF5 format
static bool isHdf5(const char* name);
static bool isHdf5(const H5std_string& name);
diff --git a/c++/src/H5LaccProp.h b/c++/src/H5LaccProp.h
index 70890b3..ec5e54f 100644
--- a/c++/src/H5LaccProp.h
+++ b/c++/src/H5LaccProp.h
@@ -12,9 +12,6 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-// Class LinkAccPropList represents the HDF5 file access property list and
-// inherits from DataType.
-
#ifndef __H5LinkAccPropList_H
#define __H5LinkAccPropList_H
@@ -22,15 +19,15 @@ namespace H5 {
/*! \class LinkAccPropList
\brief Class LinkAccPropList inherits from PropList and provides
- wrappers for the HDF5 file access property list.
+ wrappers for the HDF5 link access property list.
*/
// Inheritance: PropList -> IdComponent
class H5_DLLCPP LinkAccPropList : public PropList {
public:
- ///\brief Default file access property list.
+ ///\brief Default link access property list.
static const LinkAccPropList& DEFAULT;
- // Creates a file access property list.
+ // Creates a link access property list.
LinkAccPropList();
///\brief Returns this class name.
@@ -39,7 +36,7 @@ class H5_DLLCPP LinkAccPropList : public PropList {
// Copy constructor: same as the original LinkAccPropList.
LinkAccPropList(const LinkAccPropList& original);
- // Creates a copy of an existing file access property list
+ // Creates a copy of an existing link access property list
// using the property list id.
LinkAccPropList (const hid_t plist_id);
diff --git a/c++/src/H5LcreatProp.cpp b/c++/src/H5LcreatProp.cpp
index 695c1fe..bde9339 100644
--- a/c++/src/H5LcreatProp.cpp
+++ b/c++/src/H5LcreatProp.cpp
@@ -103,6 +103,46 @@ LinkCreatPropList::LinkCreatPropList(const LinkCreatPropList& original) : PropLi
LinkCreatPropList::LinkCreatPropList(const hid_t plist_id) : PropList(plist_id) {}
//--------------------------------------------------------------------------
+// Function: LinkCreatPropList::setCreateIntermediateGroup
+///\brief Specifies in property list whether to create missing
+/// intermediate groups.
+///\param crt_intmd_group - IN: Flag specifying whether to create
+/// intermediate groups upon the creation of an object
+///\exception H5::PropListIException
+// April, 2019
+//--------------------------------------------------------------------------
+void LinkCreatPropList::setCreateIntermediateGroup(bool crt_intmd_group) const
+{
+ herr_t ret_value = H5Pset_create_intermediate_group(id, (unsigned)crt_intmd_group);
+ // Throw exception if H5Pset_create_intermediate_group returns failure
+ if (ret_value < 0)
+ {
+ throw PropListIException("setCreateIntermediateGroup", "H5Pset_create_intermediate_group failed");
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: LinkCreatPropList::getCreateIntermediateGroup
+///\brief Determines whether property is set to enable creating missing
+/// intermediate groups.
+///\return true if creating intermediate groups is enabled, and false, otherwise
+///\exception H5::PropListIException
+// April, 2019
+//--------------------------------------------------------------------------
+bool LinkCreatPropList::getCreateIntermediateGroup() const
+{
+ unsigned crt_intmd_group;
+ herr_t ret_value = H5Pget_create_intermediate_group(id, &crt_intmd_group);
+ // Throw exception if H5Pget_create_intermediate_group returns failure
+ if (ret_value < 0)
+ {
+ throw PropListIException("getCreateIntermediateGroup", "H5Pget_create_intermediate_group failed");
+ }
+
+ return((bool)crt_intmd_group);
+}
+
+//--------------------------------------------------------------------------
// Function: LinkCreatPropList::setCharEncoding
///\brief Sets the character encoding of the string.
///
diff --git a/c++/src/H5LcreatProp.h b/c++/src/H5LcreatProp.h
index 12cb479..908ef63 100644
--- a/c++/src/H5LcreatProp.h
+++ b/c++/src/H5LcreatProp.h
@@ -12,9 +12,6 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-// Class LinkCreatPropList represents the HDF5 file access property list and
-// inherits from DataType.
-
#ifndef __H5LinkCreatPropList_H
#define __H5LinkCreatPropList_H
@@ -22,15 +19,15 @@ namespace H5 {
/*! \class LinkCreatPropList
\brief Class LinkCreatPropList inherits from PropList and provides
- wrappers for the HDF5 file access property list.
+ wrappers for the HDF5 link creation property list.
*/
// Inheritance: PropList -> IdComponent
class H5_DLLCPP LinkCreatPropList : public PropList {
public:
- ///\brief Default file access property list.
+ ///\brief Default link creation property list.
static const LinkCreatPropList& DEFAULT;
- // Creates a file access property list.
+ // Creates a link creation property list.
LinkCreatPropList();
///\brief Returns this class name.
@@ -39,10 +36,18 @@ class H5_DLLCPP LinkCreatPropList : public PropList {
// Copy constructor: same as the original LinkCreatPropList.
LinkCreatPropList(const LinkCreatPropList& original);
- // Creates a copy of an existing file access property list
+ // Creates a copy of an existing link creation property list
// using the property list id.
LinkCreatPropList (const hid_t plist_id);
+ // Specifies in property list whether to create missing
+ // intermediate groups
+ void setCreateIntermediateGroup(bool crt_intmd_group) const;
+
+ // Determines whether property is set to enable creating missing
+ // intermediate groups
+ bool getCreateIntermediateGroup() const;
+
// Sets the character encoding of the string.
void setCharEncoding(H5T_cset_t encoding) const;
diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp
index 2c49016..2641960 100644
--- a/c++/src/H5Location.cpp
+++ b/c++/src/H5Location.cpp
@@ -1066,7 +1066,7 @@ void H5Location::link(const char *curr_name, const Group& new_loc,
hid_t lcpl_id = lcpl.getId();
hid_t lapl_id = lapl.getId();
- ret_value = H5Lcreate_hard(getId(), curr_name, new_loc.getId(), new_name, H5P_DEFAULT, H5P_DEFAULT);
+ ret_value = H5Lcreate_hard(getId(), curr_name, new_loc_id, new_name, lcpl_id, lapl_id);
if (ret_value < 0)
throwException("link", "creating link failed");
}
@@ -1102,14 +1102,13 @@ void H5Location::link(const H5std_string& curr_name, const Group& new_loc,
/// H5Lcreate_hard APIs in the HDF5 C Reference Manual.
// March 2018
//--------------------------------------------------------------------------
-void H5Location::link(const char *curr_name, const hid_t same_loc,
- const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const
+void H5Location::link(const char *curr_name, const hid_t same_loc, const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const
{
herr_t ret_value = -1;
hid_t lcpl_id = lcpl.getId();
hid_t lapl_id = lapl.getId();
- ret_value = H5Lcreate_hard(getId(), curr_name, same_loc, new_name, H5P_DEFAULT, H5P_DEFAULT);
+ ret_value = H5Lcreate_hard(getId(), curr_name, same_loc, new_name, lcpl_id, lapl_id);
if (ret_value < 0)
throwException("link", "creating link failed");
diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp
index 1c22efe..8d3334b 100644
--- a/c++/src/H5Object.cpp
+++ b/c++/src/H5Object.cpp
@@ -40,9 +40,8 @@
namespace H5 {
#ifndef DOXYGEN_SHOULD_SKIP_THIS
-// userAttrOpWrpr simply interfaces between the user's function and the
-// C library function H5Aiterate2; used to resolve the different prototype
-// problem. May be moved to Iterator later.
+// userAttrOpWrpr interfaces between the user's function and the
+// C library function H5Aiterate2
extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
const H5A_info_t *ainfo, void *op_data)
{
@@ -52,6 +51,17 @@ extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
return 0;
}
+// userVisitOpWrpr interfaces between the user's function and the
+// C library function H5Ovisit2
+extern "C" herr_t userVisitOpWrpr(hid_t obj_id, const char *attr_name,
+ const H5O_info_t *obj_info, void *op_data)
+{
+ H5std_string s_attr_name = H5std_string(attr_name);
+ UserData4Visit* myData = reinterpret_cast<UserData4Visit *> (op_data);
+ int status = myData->op(*myData->obj, s_attr_name, obj_info, myData->opData);
+ return status;
+}
+
//--------------------------------------------------------------------------
// Function: H5Object default constructor (protected)
// Programmer Binh-Minh Ribler - 2000
@@ -197,8 +207,6 @@ Attribute H5Object::openAttribute(const unsigned int idx) const
///\par Description
/// The signature of user_op is
/// void (*)(H5::H5Location&, H5std_string, void*).
-/// For information, please refer to the H5Aiterate2 API in
-/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_data)
@@ -228,6 +236,61 @@ int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_dat
}
//--------------------------------------------------------------------------
+// Function: H5Object::visit
+///\brief Recursively visits all HDF5 objects accessible from this object.
+///\param idx_type - IN: Type of index; valid values include:
+/// \li \c H5_INDEX_NAME
+/// \li \c H5_INDEX_CRT_ORDER
+///\param order - IN: Order in which index is traversed; valid values include:
+/// \li \c H5_ITER_DEC
+/// \li \c H5_ITER_INC
+/// \li \c H5_ITER_NATIVE
+///\param user_op - IN: Callback function passing data regarding the
+/// object to the calling application
+///\param *op_data - IN: User-defined pointer to data required by the
+/// application for its processing of the object
+///\param fields - IN: Flags specifying the fields to be retrieved
+/// to the callback op via the H5O_info_t argument.
+/// \li \c H5O_INFO_BASIC fileno, addr, type, and rc fields
+/// \li \c H5O_INFO_TIME atime, mtime, ctime, and btime fields
+/// \li \c H5O_INFO_NUM_ATTRS num_attrs field
+/// \li \c H5O_INFO_HDR hdr field
+/// \li \c H5O_INFO_META_SIZE meta_size field
+/// \li \c H5O_INFO_ALL H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE
+///\return
+/// \li On success:
+/// \li the return value of the first operator that returns a positive value
+/// \li zero if all members were processed with no operator returning non-zero
+/// \li On failure:
+/// \li an exception Exception will be thrown if something went
+/// wrong within the library or the operator failed
+///\exception H5::Exception
+///\par Description
+/// For information, please refer to the H5Ovisit2 API in the HDF5
+/// C Reference Manual.
+// Programmer Binh-Minh Ribler - Feb, 2019
+//--------------------------------------------------------------------------
+void H5Object::visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields)
+{
+ // Store the user's function and data
+ UserData4Visit* userData = new UserData4Visit;
+ userData->opData = op_data;
+ userData->op = user_op;
+ userData->obj = this;
+
+ // Call the C API passing in op wrapper and info
+ herr_t ret_value = H5Ovisit2(getId(), idx_type, order, userVisitOpWrpr, static_cast<void *>(userData), fields);
+
+ // Release memory
+ delete userData;
+
+ // Throw exception if H5Ovisit2 failed, which could be a failure in
+ // the library or in the call back operator
+ if (ret_value < 0)
+ throw Exception(inMemFunc("visit"), "H5Ovisit2 failed");
+}
+
+//--------------------------------------------------------------------------
// Function: H5Object::objVersion
///\brief Returns the header version of this HDF5 object.
///\return Object version, which can have the following values:
diff --git a/c++/src/H5Object.h b/c++/src/H5Object.h
index 10b3865..4a4e909 100644
--- a/c++/src/H5Object.h
+++ b/c++/src/H5Object.h
@@ -40,16 +40,30 @@ namespace H5 {
// Inheritance: H5Location -> IdComponent
// Define the operator function pointer for H5Aiterate().
-typedef void (*attr_operator_t)(H5Object& loc/*in*/,
- const H5std_string attr_name/*in*/,
- void *operator_data/*in,out*/);
+typedef void (*attr_operator_t)(H5Object& loc,
+ const H5std_string attr_name,
+ void *operator_data);
+
+// Define the operator function pointer for H5Ovisit2().
+typedef int (*visit_operator_t)(H5Object& obj,
+ const H5std_string attr_name,
+ const H5O_info_t *oinfo,
+ void *operator_data);
// User data for attribute iteration
class UserData4Aiterate {
public:
attr_operator_t op;
void* opData;
- H5Object* location;
+ H5Object* location; // Consider changing to H5Location
+};
+
+// User data for visit iteration
+class UserData4Visit {
+ public:
+ visit_operator_t op;
+ void* opData;
+ H5Object* obj;
};
class H5_DLLCPP H5Object : public H5Location {
@@ -71,6 +85,9 @@ class H5_DLLCPP H5Object : public H5Location {
// Iterate user's function over the attributes of this object.
int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL);
+ // Recursively visit elements reachable from this object.
+ void visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields);
+
// Returns the object header version of an object
unsigned objVersion() const;
@@ -98,6 +115,7 @@ class H5_DLLCPP H5Object : public H5Location {
ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const;
H5std_string getObjName() const;
+
#ifndef DOXYGEN_SHOULD_SKIP_THIS
protected:
diff --git a/c++/src/cpp_doc_config b/c++/src/cpp_doc_config
index 697fb77..14ca90c 100644
--- a/c++/src/cpp_doc_config
+++ b/c++/src/cpp_doc_config
@@ -38,7 +38,7 @@ PROJECT_NAME =
# could be handy for archiving the generated documentation or if some version
# control system is used.
-PROJECT_NUMBER = "1.11.4"
+PROJECT_NUMBER = "1.11.6"
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
diff --git a/c++/test/CMakeLists.txt b/c++/test/CMakeLists.txt
index 8e2d685..95ca9b1 100644
--- a/c++/test/CMakeLists.txt
+++ b/c++/test/CMakeLists.txt
@@ -38,16 +38,17 @@ set (srcdir ${CMAKE_CURRENT_SOURCE_DIR})
configure_file (${HDF5_CPP_TEST_SOURCE_DIR}/H5srcdir_str.h.in H5srcdir_str.h @ONLY)
add_executable (cpp_testhdf5 ${CPP_TEST_SOURCES} )
-target_include_directories(cpp_testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+target_include_directories (cpp_testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
target_compile_definitions(cpp_testhdf5
PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings
)
-TARGET_C_PROPERTIES (cpp_testhdf5 STATIC)
-target_link_libraries (cpp_testhdf5 PRIVATE
- ${HDF5_CPP_LIB_TARGET}
- ${HDF5_LIB_TARGET}
- ${HDF5_TEST_LIB_TARGET}
-)
+if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (cpp_testhdf5 STATIC)
+ target_link_libraries (cpp_testhdf5 PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
+else ()
+ TARGET_C_PROPERTIES (cpp_testhdf5 SHARED)
+ target_link_libraries (cpp_testhdf5 PRIVATE ${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} ${HDF5_TEST_LIBSH_TARGET})
+endif ()
set_target_properties (cpp_testhdf5 PROPERTIES FOLDER test/cpp)
include (CMakeTests.cmake)
diff --git a/c++/test/tarray.cpp b/c++/test/tarray.cpp
index 6bd4ca6..fccc556 100644
--- a/c++/test/tarray.cpp
+++ b/c++/test/tarray.cpp
@@ -286,7 +286,7 @@ H5::DataType getArr()
*dims = 5;
H5::ArrayType ret;
ret = H5::ArrayType(H5::PredType::NATIVE_INT, 1, dims);
- delete[] dims;
+ delete dims;
return ret;
}
@@ -371,7 +371,6 @@ static void test_array_info()
s1_t rdata[SPACE1_DIM1][ARRAY1_DIM1]; // Information read in
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
- int nmemb; // Number of compound members
int ii; // counting variables
hsize_t idxi, idxj, idxk; // dimension indicing variables
H5T_class_t mclass; // Datatype class for field
diff --git a/c++/test/tfile.cpp b/c++/test/tfile.cpp
index a2bf1c2..055cf23 100644
--- a/c++/test/tfile.cpp
+++ b/c++/test/tfile.cpp
@@ -412,6 +412,64 @@ static void test_file_size()
/*-------------------------------------------------------------------------
+ * Function: test_file_num
+ *
+ * Purpose Test file number.
+ *
+ * Return None
+ *
+ * Programmer Quincey Koziol
+ * April, 2019
+ *-------------------------------------------------------------------------
+ */
+static void test_file_num()
+{
+ // Output message about test being performed
+ SUBTEST("File Number");
+
+ hid_t fapl_id;
+ fapl_id = h5_fileaccess(); // in h5test.c, returns a file access template
+
+ try {
+ // Use the file access template id to create a file access prop.
+ // list object to pass in H5File::H5File
+ FileAccPropList fapl(fapl_id);
+
+ // Create two files
+ H5File file1(FILE1, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
+ H5File file2(FILE2, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
+
+ // Open the first file again
+ H5File file3(FILE1, H5F_ACC_RDWR);
+
+ // Get file numbers
+ unsigned long file_num1 = file1.getFileNum();
+ unsigned long file_num2 = file2.getFileNum();
+ unsigned long file_num3 = file3.getFileNum();
+
+ // Check file numbers
+ if (file_num1 == file_num2)
+ issue_fail_msg("test_file_num()", __LINE__, __FILE__, "getFileNum() returned wrong value");
+ if (file_num1 != file_num3)
+ issue_fail_msg("test_file_num()", __LINE__, __FILE__, "getFileNum() returned wrong value");
+
+ PASSED();
+ } // end of try block
+
+ catch (Exception& E)
+ {
+ issue_fail_msg("test_file_num()", __LINE__, __FILE__, E.getCDetailMsg());
+ }
+
+ // use C test utility routine to close property list.
+ herr_t ret = H5Pclose(fapl_id);
+ if (ret < 0)
+ issue_fail_msg("test_file_num()", __LINE__, __FILE__, "H5Pclose failed");
+
+} // test_file_num()
+
+
+/*-------------------------------------------------------------------------
* Function: test_file_name
*
* Purpose Test getting file's name.
@@ -966,6 +1024,7 @@ void test_file()
test_file_create(); // Test file creation (also creation templates)
test_file_open(); // Test file opening
test_file_size(); // Test file size
+ test_file_num(); // Test file number
test_file_name(); // Test getting file's name
test_file_attribute(); // Test file attribute feature
test_libver_bounds(); // Test format version
diff --git a/c++/test/tlinks.cpp b/c++/test/tlinks.cpp
index 6e990c9..491cd6a 100644
--- a/c++/test/tlinks.cpp
+++ b/c++/test/tlinks.cpp
@@ -31,288 +31,27 @@ using namespace H5;
#include "h5test.h"
#include "h5cpputil.h" // C++ utilility header file
-// A lot of the definition inherited from C test links.c is left here until
-// the H5L API is implemented and tests are completed - BMR 10/19/2009
-/*
- * This file needs to access private information from the H5G package.
- * This file also needs to access the group testing code.
- */
-//#define H5G_FRIEND
-//#define H5G_TESTING
-
-//#include "h5test.h"
-//#include "H5Gpkg.h" /* Groups */
-//#include "H5Iprivate.h" /* IDs */
-//#include "H5Lprivate.h" /* Links */
-
-/* File for external link test. Created with gen_udlinks.c */
-#define LINKED_FILE "be_extlink2.h5"
-
-#if 0
-const char *FILENAME[] = {
- "links0",
- "links1",
- "links2",
- "links3",
- "links4a", /* 4 */
- "links4b", /* 5 */
- "links4c", /* 6 */
- "links4d", /* 7 */
- "links5", /* 8 */
- "links6", /* 9 */
- "links7", /* 10 */
- "links8", /* 11 */
- "extlinks0", /* 12: main files */
- "tmp/extlinks0", /* 13: */
- "extlinks1", /* 14: target files */
- "tmp/extlinks1", /* 15: */
- "extlinks2", /* 16: */
- "tmp/extlinks2", /* 17: */
- "extlinks3", /* 18: */
- "tmp/extlinks3", /* 19: */
- "extlinks4", /* 20: */
- "tmp/extlinks4", /* 21: */
- "extlinks5", /* 22: */
- "tmp/extlinks6", /* 23: */
- "extlinks7", /* 24: */
- "tmp/extlinks7", /* 25: */
- "tmp/extlinks8", /* 26: */
- "extlinks9", /* 27: */
- "tmp/extlinks9", /* 28: */
- "extlinks10", /* 29: */ /* TESTS for windows */
- "tmp/extlinks10", /* 30: */
- "tmp/extlinks11", /* 31: */
- "tmp/extlinks12", /* 32: */
- "extlinks13", /* 33: */
- "tmp/extlinks13", /* 34: */
- "tmp/extlinks14", /* 35: */
- "tmp/extlinks15", /* 36: */
- "extlinks16A", /* 37: */ /* TESTS for H5P_set_elink_fapl */
- "extlinks16B", /* 38: */
- "extlinks17", /* 39: */
- "extlinks18A", /* 40: */
- "extlinks18B", /* 41: */
- "extlinks19A", /* 42: */
- "extlinks19B", /* 43: */
- "extlinks20", /* 44: */
- NULL
-};
-
-#endif // 0
-
-#define TMPDIR "tmp"
-
-#define FAMILY_SIZE 1024
-#define CORE_INCREMENT 1024
-#define NUM400 400
-
-/* do not do check_all_closed() for "ext*" files and "tmp/ext*" */
-#define EXTSTOP 12
-
-#define LINK_BUF_SIZE 1024
#define NAME_BUF_SIZE 1024
-#define MAX_NAME_LEN ((64*1024)+1024)
-
-/* Link type IDs */
-#define UD_HARD_TYPE 201
-#define UD_CB_TYPE H5L_TYPE_MAX
-#define UD_PLIST_TYPE 128
-#define UD_CBFAIL_TYPE UD_PLIST_TYPE
-#define UD_ERROR_TYPE 189
-#define UD_BAD_TYPE1 H5L_TYPE_HARD
-#define UD_BAD_TYPE2 (H5L_TYPE_UD_MIN - 5)
-#define UD_BAD_VERS (H5L_LINK_CLASS_T_VERS + 1)
-
-#define DEST_PROP_NAME "destination_group"
-#define REREG_TARGET_NAME "rereg_target"
-
-#define UD_CB_LINK_NAME "ud_callback_link"
-#define NEW_UD_CB_LINK_NAME "ud_callback_link2"
-#define UD_CB_TARGET "ud_target"
-#define UD_CB_TARGET_LEN 10
-
-#define LE_FILENAME "le_extlink1.h5"
-#define BE_FILENAME "be_extlink1.h5"
-
-#define ELINK_CB_FAM_SIZE (hsize_t) 100
-
#define H5L_DIM1 100
#define H5L_DIM2 100
-/* Creation order macros */
-#define CORDER_SOFT_GROUP_NAME "corder_soft_group"
-#define CORDER_NLINKS 18
-
-/* Timestamp macros */
-#define TIMESTAMP_GROUP_1 "timestamp1"
-#define TIMESTAMP_GROUP_2 "timestamp2"
-
-/* Link iteration struct */
-typedef struct {
- H5_iter_order_t order; /* Direction of iteration */
- unsigned ncalled; /* # of times callback is entered */
- unsigned nskipped; /* # of links skipped */
- int stop; /* # of iterations to stop after */
- int64_t curr; /* Current creation order value */
- size_t max_visit; /* Size of "visited link" flag array */
- hbool_t *visited; /* Pointer to array of "visited link" flags */
-} link_iter_info_t;
-
-#if 0
-/* Link visit structs */
-typedef struct {
- const char *path; /* Path to link */
- H5L_type_t type; /* Type of link */
-} link_visit_t;
-static const link_visit_t lvisit0[] = {
- {"Dataset_zero", H5L_TYPE_HARD},
- {"Group1", H5L_TYPE_HARD},
- {"Group1/Dataset_one", H5L_TYPE_HARD},
- {"Group1/Group2", H5L_TYPE_HARD},
- {"Group1/Group2/Dataset_two", H5L_TYPE_HARD},
- {"Group1/Group2/Type_two", H5L_TYPE_HARD},
- {"Group1/Group2/hard_zero", H5L_TYPE_HARD},
- {"Group1/Type_one", H5L_TYPE_HARD},
- {"Group1/hard_one", H5L_TYPE_HARD},
- {"Type_zero", H5L_TYPE_HARD},
- {"ext_dangle", H5L_TYPE_EXTERNAL},
- {"ext_one", H5L_TYPE_EXTERNAL},
- {"hard_one", H5L_TYPE_HARD},
- {"hard_two", H5L_TYPE_HARD},
- {"hard_zero", H5L_TYPE_HARD},
- {"soft_dangle", H5L_TYPE_SOFT},
- {"soft_one", H5L_TYPE_SOFT},
- {"soft_two", H5L_TYPE_SOFT}
-};
-static const link_visit_t lvisit1[] = {
- {"Dataset_one", H5L_TYPE_HARD},
- {"Group2", H5L_TYPE_HARD},
- {"Group2/Dataset_two", H5L_TYPE_HARD},
- {"Group2/Type_two", H5L_TYPE_HARD},
- {"Group2/hard_zero", H5L_TYPE_HARD},
- {"Group2/hard_zero/Dataset_zero", H5L_TYPE_HARD},
- {"Group2/hard_zero/Group1", H5L_TYPE_HARD},
- {"Group2/hard_zero/Type_zero", H5L_TYPE_HARD},
- {"Group2/hard_zero/ext_dangle", H5L_TYPE_EXTERNAL},
- {"Group2/hard_zero/ext_one", H5L_TYPE_EXTERNAL},
- {"Group2/hard_zero/hard_one", H5L_TYPE_HARD},
- {"Group2/hard_zero/hard_two", H5L_TYPE_HARD},
- {"Group2/hard_zero/hard_zero", H5L_TYPE_HARD},
- {"Group2/hard_zero/soft_dangle", H5L_TYPE_SOFT},
- {"Group2/hard_zero/soft_one", H5L_TYPE_SOFT},
- {"Group2/hard_zero/soft_two", H5L_TYPE_SOFT},
- {"Type_one", H5L_TYPE_HARD},
- {"hard_one", H5L_TYPE_HARD}
-};
-static const link_visit_t lvisit2[] = {
- {"Dataset_two", H5L_TYPE_HARD},
- {"Type_two", H5L_TYPE_HARD},
- {"hard_zero", H5L_TYPE_HARD},
- {"hard_zero/Dataset_zero", H5L_TYPE_HARD},
- {"hard_zero/Group1", H5L_TYPE_HARD},
- {"hard_zero/Group1/Dataset_one", H5L_TYPE_HARD},
- {"hard_zero/Group1/Group2", H5L_TYPE_HARD},
- {"hard_zero/Group1/Type_one", H5L_TYPE_HARD},
- {"hard_zero/Group1/hard_one", H5L_TYPE_HARD},
- {"hard_zero/Type_zero", H5L_TYPE_HARD},
- {"hard_zero/ext_dangle", H5L_TYPE_EXTERNAL},
- {"hard_zero/ext_one", H5L_TYPE_EXTERNAL},
- {"hard_zero/hard_one", H5L_TYPE_HARD},
- {"hard_zero/hard_two", H5L_TYPE_HARD},
- {"hard_zero/hard_zero", H5L_TYPE_HARD},
- {"hard_zero/soft_dangle", H5L_TYPE_SOFT},
- {"hard_zero/soft_one", H5L_TYPE_SOFT},
- {"hard_zero/soft_two", H5L_TYPE_SOFT}
-};
-
-typedef struct {
- unsigned idx; /* Index in link visit structure */
- const link_visit_t *info; /* Pointer to the link visit structure to use */
-} lvisit_ud_t;
-
-
-/* Object visit structs */
+// Object visit structs
typedef struct {
const char *path; /* Path to object */
H5O_type_t type; /* Type of object */
} obj_visit_t;
-static const obj_visit_t ovisit0_old[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_zero", H5O_TYPE_DATASET},
- {"Group1", H5O_TYPE_GROUP},
- {"Group1/Dataset_one", H5O_TYPE_DATASET},
- {"Group1/Group2", H5O_TYPE_GROUP},
- {"Group1/Group2/Dataset_two", H5O_TYPE_DATASET},
- {"Group1/Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
- {"Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit0_new[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_zero", H5O_TYPE_DATASET},
- {"Group1", H5O_TYPE_GROUP},
- {"Group1/Dataset_one", H5O_TYPE_DATASET},
- {"Group1/Group2", H5O_TYPE_GROUP},
- {"Group1/Group2/Dataset_two", H5O_TYPE_DATASET},
- {"Group1/Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
- {"Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit1_old[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_one", H5O_TYPE_DATASET},
- {"Group2", H5O_TYPE_GROUP},
- {"Group2/Dataset_two", H5O_TYPE_DATASET},
- {"Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"Group2/hard_zero", H5O_TYPE_GROUP},
- {"Group2/hard_zero/Dataset_zero", H5O_TYPE_DATASET},
- {"Group2/hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE},
- {"Type_one", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit1_new[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_one", H5O_TYPE_DATASET},
- {"Group2", H5O_TYPE_GROUP},
- {"Group2/Dataset_two", H5O_TYPE_DATASET},
- {"Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"Group2/hard_zero", H5O_TYPE_GROUP},
- {"Group2/hard_zero/Dataset_zero", H5O_TYPE_DATASET},
- {"Group2/hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE},
- {"Type_one", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit2_old[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_two", H5O_TYPE_DATASET},
- {"Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"hard_zero", H5O_TYPE_GROUP},
- {"hard_zero/Dataset_zero", H5O_TYPE_DATASET},
- {"hard_zero/Group1", H5O_TYPE_GROUP},
- {"hard_zero/Group1/Dataset_one", H5O_TYPE_DATASET},
- {"hard_zero/Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
- {"hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit2_new[] = {
- {".", H5O_TYPE_GROUP},
- {"Dataset_two", H5O_TYPE_DATASET},
- {"Type_two", H5O_TYPE_NAMED_DATATYPE},
- {"hard_zero", H5O_TYPE_GROUP},
- {"hard_zero/Dataset_zero", H5O_TYPE_DATASET},
- {"hard_zero/Group1", H5O_TYPE_GROUP},
- {"hard_zero/Group1/Dataset_one", H5O_TYPE_DATASET},
- {"hard_zero/Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
- {"hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
+// User data for callback function
typedef struct {
unsigned idx; /* Index in object visit structure */
const obj_visit_t *info; /* Pointer to the object visit structure to use */
} ovisit_ud_t;
-#endif
static const char *FILENAME[] = {
"link0",
"link1.h5",
"link2.h5",
+ "visit",
NULL
};
@@ -842,6 +581,140 @@ static void test_num_links(hid_t fapl_id, hbool_t new_format)
} // test_num_links
+// Data for visit on the file
+static const obj_visit_t file_visit[] = {
+ {".", H5O_TYPE_GROUP},
+ {"Data", H5O_TYPE_GROUP},
+ {"Data/Compressed_Data", H5O_TYPE_DATASET},
+ {"Data/Float_Data", H5O_TYPE_DATASET},
+};
+
+// Data for visit on the group
+static const obj_visit_t group_visit[] = {
+ {".", H5O_TYPE_GROUP},
+ {"Compressed_Data", H5O_TYPE_DATASET},
+ {"Float_Data", H5O_TYPE_DATASET},
+};
+
+const H5std_string FILE_NAME("tvisit.h5");
+const H5std_string GROUP_NAME("/Data");
+const H5std_string DSET1_NAME("/Data/Compressed_Data");
+const H5std_string DSET2_NAME("/Data/Float_Data");
+const int RANK = 2;
+const int DIM1 = 2;
+
+// Operator function
+static int visit_obj_cb(H5Object& obj, const H5std_string name, const H5O_info_t *oinfo, void *_op_data)
+{
+ ovisit_ud_t *op_data = static_cast <ovisit_ud_t *>(_op_data);
+
+ // Check for correct object information
+ if(strcmp(op_data->info[op_data->idx].path, name.c_str())) return(H5_ITER_ERROR);
+ if(op_data->info[op_data->idx].type != oinfo->type) return(H5_ITER_ERROR);
+
+ // Advance to next location
+ op_data->idx++;
+
+ return(H5_ITER_CONT);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: test_visit
+ *
+ * Purpose Test H5Object::visit
+ *
+ * Return None
+ *
+ * February 8, 2019
+ *-------------------------------------------------------------------------
+ */
+static void test_visit(hid_t fapl_id, hbool_t new_format)
+{
+ hsize_t dims[2];
+ hsize_t cdims[2];
+ char filename[NAME_BUF_SIZE];
+
+ if(new_format)
+ SUBTEST("H5Object::visit (w/new group format)")
+ else
+ SUBTEST("H5Object::visit")
+
+ try
+ {
+ // Use the file access template id to create a file access prop. list
+ FileAccPropList fapl(fapl_id);
+
+ // Build the hdf5 file name and create the file
+ h5_fixname(FILENAME[3], fapl_id, filename, sizeof filename);
+ H5File *file = new H5File(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
+
+ // Create a group
+ Group* group = new Group(file->createGroup(GROUP_NAME));
+
+ // Create a chunked/compressed dataset within this group specified by path
+ dims[0] = 20;
+ dims[1] = 2;
+ cdims[0] = 2;
+ cdims[1] = 2;
+ DataSpace *dataspace = new DataSpace(RANK, dims); // create new dspace
+ DSetCreatPropList ds_creatplist; // create dataset creation prop list
+ ds_creatplist.setChunk(2, cdims); // then modify it for compression
+ ds_creatplist.setDeflate(6);
+
+ DataSet* dataset = new DataSet(file->createDataSet(DSET1_NAME,
+ PredType::NATIVE_INT, *dataspace, ds_creatplist));
+
+ delete dataset;
+ delete dataspace;
+
+ // Create another dataset
+ dims[0] = 5;
+ dims[1] = 2;
+ dataspace = new DataSpace(RANK, dims); // create second dspace
+ dataset = new DataSet(file->createDataSet(DSET2_NAME,
+ PredType::NATIVE_FLOAT, *dataspace));
+
+ // Close everything
+ delete dataset;
+ delete dataspace;
+ delete group;
+ delete file;
+
+ // Reopen the file and group in the file.
+ file = new H5File(filename, H5F_ACC_RDWR);
+ group = new Group(file->openGroup("Data"));
+
+ // Open the group
+ dataset = new DataSet(group->openDataSet(DSET2_NAME));
+ delete dataset;
+
+ // Visit objects in the file
+ ovisit_ud_t udata; /* User-data for visiting */
+ udata.idx = 0;
+ udata.info = file_visit;
+
+ file->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
+
+ // Visit objects in the group
+ udata.idx = 0;
+ udata.info = group_visit;
+
+ group->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
+
+ // Close the group and file.
+ delete group;
+ delete file;
+
+ PASSED();
+ } // end of try block
+ catch (Exception& E)
+ {
+ cerr << "in catch" << endl;
+ issue_fail_msg("test_visit()", __LINE__, __FILE__, E.getCDetailMsg());
+ }
+} // test_visit()
+
+
/*-------------------------------------------------------------------------
* Function: test_links
*
@@ -858,7 +731,8 @@ void test_links()
hid_t fapl_id, fapl2_id; /* File access property lists */
unsigned new_format; /* Whether to use the new format or not */
- fapl_id = h5_fileaccess();
+ if((fapl_id = h5_fileaccess()) < 0)
+ throw Exception("test_links", "Unable to get file access property list");
// Output message about test being performed
MESSAGE(5, ("Testing Various Links\n"));
@@ -891,24 +765,18 @@ void test_links()
test_move(my_fapl_id, new_format);
test_copy(my_fapl_id, new_format);
test_lcpl(my_fapl_id, new_format);
+ test_visit(my_fapl_id, new_format);
} /* end for */
/* Close 2nd FAPL */
H5Pclose(fapl2_id);
h5_clean_files(FILENAME, fapl_id);
-
- /* Test that external links can be used after a library reset. MUST be
- * called last so the reset doesn't interfere with the property lists. This
- * routine will delete its own file. */
- /* nerrors += external_reset_register() < 0 ? 1 : 0;
- */
}
catch (Exception& E)
{
issue_fail_msg("test_links()", __LINE__, __FILE__, E.getCDetailMsg());
}
-
}
@@ -926,7 +794,3 @@ void cleanup_links()
HDremove(FILENAME[0]);
HDremove(FILENAME[1]);
}
-
-
-
-
diff --git a/c++/test/tobject.cpp b/c++/test/tobject.cpp
index 537716f..232ece2 100644
--- a/c++/test/tobject.cpp
+++ b/c++/test/tobject.cpp
@@ -609,10 +609,121 @@ static void test_getobjectinfo_same_file()
catch (Exception& E)
{
cerr << " in Exception " << E.getCFuncName() << "detail: " << E.getCDetailMsg() << endl;
- issue_fail_msg("test_file_name()", __LINE__, __FILE__, E.getCDetailMsg());
+ issue_fail_msg("test_getobjectinfo_same_file()", __LINE__, __FILE__, E.getCDetailMsg());
+ }
+
+} // test_getobjectinfo_same_file
+
+/*-------------------------------------------------------------------------
+ * Function: test_intermediate_groups
+ *
+ * Purpose Test that intermediate groups are created as specified by
+ * the property setting.
+ *
+ * Return None
+ *
+ * April, 2019
+ *-------------------------------------------------------------------------
+ */
+const H5std_string FILE_INTERGRPS("tobject_intergrps.h5");
+const H5std_string GROUP10NAME("/group10");
+const H5std_string GROUP11NAME("/group10/group11");
+const H5std_string GROUP12NAME("/group10/group11/group12");
+const H5std_string GROUP13NAME("/group10/group11/group12/group13");
+const H5std_string GROUP14NAME("/group10/group11/group12/group13/group14");
+const H5std_string GROUP14FROM13NAME("group14");
+const H5std_string GROUP20NAME("/group20");
+const H5std_string GROUP21NAME("/group20/group21");
+const H5std_string GROUP22NAME("group21/group22");
+const H5std_string GROUP22FULLNAME("/group20/group21/group22");
+static void test_intermediate_groups()
+{
+ // Output message about test being performed
+ SUBTEST("Group::set/getCreateIntermediateGroup");
+
+ try {
+ // Create a new HDF5 file
+ H5File file(FILE_INTERGRPS, H5F_ACC_TRUNC);
+
+ // Create a link create property list and set the "create
+ // intermediate groups" flag
+ LinkCreatPropList lcpl;
+ lcpl.setCreateIntermediateGroup(true);
+
+ // Verify value of create missing groups flag
+ bool crt_int_grps = lcpl.getCreateIntermediateGroup();
+ verify_val(crt_int_grps, true, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
+
+ // Create GROUP12NAME with creating missing groups
+ Group grp12(file.createGroup(GROUP12NAME, lcpl));
+
+ // Missing groups: GROUP10NAME and GROUP11NAME
+
+ // Create GROUP14NAME without the use of link create plist, should
+ // fail because group GROUP13NAME is missing
+ try {
+ Group grp14_nopl(file.createGroup(GROUP14NAME));
+ } catch (FileIException& expected1) {} // Failure is ignored
+
+ // Create GROUP14NAME with the flag to create missing groups set
+ // to FALSE, should fail because group GROUP13NAME is missing
+
+ // Reset flag to not create missing groups
+ lcpl.setCreateIntermediateGroup(false);
+
+ // Verify value of create missing groups flag
+ crt_int_grps = lcpl.getCreateIntermediateGroup();
+ verify_val(crt_int_grps, false, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
+
+ try {
+ Group grp14_false(file.createGroup(GROUP14NAME, lcpl));
+ } catch (FileIException& expected2) {} // Failure is ignored
+
+ // Set the flag to create missing groups set to TRUE
+ lcpl.setCreateIntermediateGroup(true);
+ crt_int_grps = lcpl.getCreateIntermediateGroup();
+ verify_val(crt_int_grps, true, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
+
+
+ // Create GROUP14NAME with the use of link create plist
+ Group grp14(file.createGroup(GROUP14NAME, lcpl));
+
+ // Missing groups: GROUP13NAME
+
+ // Create group GROUP20NAME
+ Group grp20(file.createGroup(GROUP20NAME));
+
+ // Create group GROUP22NAME with missing group GROUP21NAME
+ Group grp22(grp20.createGroup(GROUP22NAME, lcpl));
+
+ // Close groups and file
+ grp12.close();
+ grp14.close();
+ grp20.close();
+ grp22.close();
+ file.close();
+
+ // Reopen the file
+ file.openFile(FILE_INTERGRPS, H5F_ACC_RDWR);
+
+ // Open the missing groups and various combinations
+ Group grp10(file.openGroup(GROUP10NAME));
+ Group grp11(file.openGroup(GROUP11NAME));
+ Group grp13(file.openGroup(GROUP13NAME));
+ Group grp14from13(grp13.openGroup(GROUP14FROM13NAME));
+ Group grp21(file.openGroup(GROUP21NAME));
+ Group grp22fromfile(file.openGroup(GROUP22FULLNAME));
+
+ PASSED();
+ } // end of try block
+ // catch all other exceptions
+ catch (Exception& E)
+ {
+ cerr << " in Exception " << E.getCFuncName() << "detail: " << E.getCDetailMsg() << endl;
+ issue_fail_msg("test_intermediate_groups()", __LINE__, __FILE__, E.getCDetailMsg());
}
-} // test_h5o_getinfo_same_file
+} // test_intermediate_groups
/*-------------------------------------------------------------------------
* Function: test_object
@@ -631,12 +742,13 @@ void test_object()
// Output message about test being performed
MESSAGE(5, ("Testing Object Functions\n"));
- test_get_objname(); // Test get object name from groups/datasets
- test_existance(); // Test check for object existance
- test_get_objname_ontypes(); // Test get object name from types
- test_get_objtype(); // Test get object type
- test_open_object_header(); // Test object header functions (H5O)
- test_getobjectinfo_same_file(); // Test object info in same file
+ test_get_objname(); // Test get object name from groups/datasets
+ test_existance(); // Test check for object existance
+ test_get_objname_ontypes(); // Test get object name from types
+ test_get_objtype(); // Test get object type
+ test_open_object_header(); // Test object header functions (H5O)
+ test_getobjectinfo_same_file(); // Test object info in same file
+ test_intermediate_groups(); // Test intermediate group property
} // test_object
diff --git a/config/cmake/CTestCustom.cmake b/config/cmake/CTestCustom.cmake
index 27eaa56..6db0f6f 100644
--- a/config/cmake/CTestCustom.cmake
+++ b/config/cmake/CTestCustom.cmake
@@ -39,7 +39,6 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
H5TEST-flush2 #designed to need flush1
H5TEST-error_test #uses runTest.cmake
H5TEST-err_compat #uses runTest.cmake
- H5TEST-links_env #uses runTest.cmake
H5TEST-testlibinfo #uses grepTest.cmake
#########
H5TEST-clear-objects
@@ -64,11 +63,19 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
CPP_testhdf5-clear-objects
######### tools/h5clear #########
H5CLEAR-clearall-objects
+ H5CLEAR-copy_h5clear_fsm_persist_equal.h5
+ H5CLEAR-copy_h5clear_fsm_persist_greater.h5
+ H5CLEAR-copy_h5clear_fsm_persist_less.h5
+ H5CLEAR-copy_h5clear_fsm_persist_noclose.h5
+ H5CLEAR-copy_h5clear_fsm_persist_user_equal.h5
+ H5CLEAR-copy_h5clear_fsm_persist_user_greater.h5
+ H5CLEAR-copy_h5clear_fsm_persist_user_less.h5
H5CLEAR-copy_h5clear_log_v3.h5
H5CLEAR-copy_h5clear_mdc_image.h5
H5CLEAR-copy_h5clear_sec2_v0.h5
H5CLEAR-copy_h5clear_sec2_v2.h5
H5CLEAR-copy_h5clear_sec2_v3.h5
+ H5CLEAR-copy_h5clear_status_noclear.h5
H5CLEAR-copy_latest_h5clear_log_v3.h5
H5CLEAR-copy_latest_h5clear_sec2_v3.h5
H5CLEAR-copy_mod_h5clear_mdc_image.h5
@@ -86,6 +93,7 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
H5DUMP_PACKED_BITS-clearall-objects
H5DUMP-XML-clearall-objects
H5DUMP_VDS-clearall-objects
+ H5DUMP-t128bit_float #uses grepTest.cmake
######### tools/h5format_convert #########
H5FC-clearall-objects
######### tools/h5import #########
diff --git a/config/cmake/FindHDFJAVA.cmake.in b/config/cmake/FindHDFJAVA.cmake.in
deleted file mode 100644
index ed2b8c2..0000000
--- a/config/cmake/FindHDFJAVA.cmake.in
+++ /dev/null
@@ -1,79 +0,0 @@
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-#
-# To be used by projects that make use of CMakeified hdf-java
-#
-
-#
-# Find the HDFJAVA includes and get all installed hdf-java library settings from
-# HDFJAVA-config.cmake file : Requires a CMake compatible hdf-java-@HDFJAVA_PACKAGE_VERSION@ or later
-# for this feature to work. The following vars are set if hdf-java is found.
-#
-# HDFJAVA_FOUND - True if found, otherwise all other vars are undefined
-# HDFJAVA_VERSION_STRING - full version (e.g. @HDFJAVA_PACKAGE_VERSION@)
-# HDFJAVA_VERSION_MAJOR - major part of version (e.g. @HDFJAVA_PACKAGE_VERSION_MAJOR@)
-# HDFJAVA_VERSION_MINOR - minor part (e.g. @HDFJAVA_PACKAGE_VERSION_MINOR@)
-#
-# Target names that are valid (depending on enabled options)
-# will be the following
-#
-#
-# To aid in finding HDFJAVA as part of a subproject set
-# HDFJAVA_ROOT_DIR_HINT to the location where @HDFJAVA_PACKAGE@@HDF_PACKAGE_EXT@-config.cmake lies
-
-INCLUDE (SelectLibraryConfigurations)
-INCLUDE (FindPackageHandleStandardArgs)
-
-# The HINTS option should only be used for values computed from the system.
-set (_HDFJAVA_HINTS
- $ENV{HOME}/.local
- $ENV{HDFJAVA_ROOT}
- $ENV{HDFJAVA_ROOT_DIR_HINT}
-)
-# Hard-coded guesses should still go in PATHS. This ensures that the user
-# environment can always override hard guesses.
-set (_HDFJAVA_PATHS
- $ENV{HOME}/.local
- $ENV{HDFJAVA_ROOT}
- $ENV{HDFJAVA_ROOT_DIR_HINT}
- /usr/lib/@HDFJAVA_PACKAGE@
- /usr/share/@HDFJAVA_PACKAGE@
- /usr/local/@HDFJAVA_PACKAGE@
- /usr/local/@HDFJAVA_PACKAGE@/share
-)
-
-FIND_PATH (HDFJAVA_ROOT_DIR "@HDFJAVA_PACKAGE@@HDF_PACKAGE_EXT@-config.cmake"
- HINTS ${_HDFJAVA_HINTS}
- PATHS ${_HDFJAVA_PATHS}
- PATH_SUFFIXES
- cmake/@HDFJAVA_PACKAGE@
- lib/cmake/@HDFJAVA_PACKAGE@
- share/cmake/@HDFJAVA_PACKAGE@
-)
-
-FIND_PATH (HDFJAVA_LIBRARY "jarhdf5-@HDFJAVA_PACKAGE_VERSION@.jar"
- HINTS ${_HDFJAVA_HINTS}
- PATHS ${_HDFJAVA_PATHS}
- PATH_SUFFIXES
- lib
-)
-
-if (HDFJAVA_ROOT_DIR)
- set (HDFJAVA_FOUND "YES")
- INCLUDE (${HDFJAVA_ROOT_DIR}/@HDFJAVA_PACKAGE@@HDF_PACKAGE_EXT@-config.cmake)
- set (HDFJAVA_LIBRARIES "${HDFJAVA_LIBRARY}")
- set (HDFJAVA_INCLUDE_DIRS
- ${HDFJAVA_LIBRARY}/jarhdf-@HDFJAVA_PACKAGE_VERSION@.jar
- ${HDFJAVA_LIBRARY}/jarhdf5-@HDFJAVA_PACKAGE_VERSION@.jar
- )
-
-endif ()
diff --git a/config/cmake/FindJNI.cmake b/config/cmake/FindJNI.cmake
deleted file mode 100644
index 1e6daf6..0000000
--- a/config/cmake/FindJNI.cmake
+++ /dev/null
@@ -1,347 +0,0 @@
-# Distributed under the OSI-approved BSD 3-Clause License. See https://cmake.org/licensing for details.
-
-#.rst:
-# FindJNI
-# -------
-#
-# Find JNI java libraries.
-#
-# This module finds if Java is installed and determines where the
-# include files and libraries are. It also determines what the name of
-# the library is. The caller may set variable JAVA_HOME to specify a
-# Java installation prefix explicitly.
-#
-# This module sets the following result variables:
-#
-# ::
-#
-# JNI_INCLUDE_DIRS = the include dirs to use
-# JNI_LIBRARIES = the libraries to use
-# JNI_FOUND = TRUE if JNI headers and libraries were found.
-# JAVA_AWT_LIBRARY = the path to the jawt library
-# JAVA_JVM_LIBRARY = the path to the jvm library
-# JAVA_INCLUDE_PATH = the include path to jni.h
-# JAVA_INCLUDE_PATH2 = the include path to jni_md.h
-# JAVA_AWT_INCLUDE_PATH = the include path to jawt.h
-
-# Expand {libarch} occurences to java_libarch subdirectory(-ies) and set ${_var}
-macro(java_append_library_directories _var)
- # Determine java arch-specific library subdir
- # Mostly based on openjdk/jdk/make/common/shared/Platform.gmk as of openjdk
- # 1.6.0_18 + icedtea patches. However, it would be much better to base the
- # guess on the first part of the GNU config.guess platform triplet.
- if(CMAKE_SYSTEM_PROCESSOR STREQUAL "x86_64")
- if(CMAKE_LIBRARY_ARCHITECTURE STREQUAL "x86_64-linux-gnux32")
- set(_java_libarch "x32" "amd64" "i386")
- else()
- set(_java_libarch "amd64" "i386")
- endif()
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^i.86$")
- set(_java_libarch "i386")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^alpha")
- set(_java_libarch "alpha")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^arm")
- # Subdir is "arm" for both big-endian (arm) and little-endian (armel).
- set(_java_libarch "arm" "aarch32")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^mips")
- # mips* machines are bi-endian mostly so processor does not tell
- # endianess of the underlying system.
- set(_java_libarch "${CMAKE_SYSTEM_PROCESSOR}" "mips" "mipsel" "mipseb" "mips64" "mips64el" "mipsn32" "mipsn32el")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^(powerpc|ppc)64le")
- set(_java_libarch "ppc64" "ppc64le")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^(powerpc|ppc)64")
- set(_java_libarch "ppc64" "ppc")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^(powerpc|ppc)")
- set(_java_libarch "ppc" "ppc64")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^sparc")
- # Both flavours can run on the same processor
- set(_java_libarch "${CMAKE_SYSTEM_PROCESSOR}" "sparc" "sparcv9")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^(parisc|hppa)")
- set(_java_libarch "parisc" "parisc64")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^s390")
- # s390 binaries can run on s390x machines
- set(_java_libarch "${CMAKE_SYSTEM_PROCESSOR}" "s390" "s390x")
- elseif(CMAKE_SYSTEM_PROCESSOR MATCHES "^sh")
- set(_java_libarch "sh")
- else()
- set(_java_libarch "${CMAKE_SYSTEM_PROCESSOR}")
- endif()
-
- # Append default list architectures if CMAKE_SYSTEM_PROCESSOR was empty or
- # system is non-Linux (where the code above has not been well tested)
- if(NOT _java_libarch OR NOT (CMAKE_SYSTEM_NAME MATCHES "Linux"))
- list(APPEND _java_libarch "i386" "amd64" "ppc")
- endif()
-
- # Sometimes ${CMAKE_SYSTEM_PROCESSOR} is added to the list to prefer
- # current value to a hardcoded list. Remove possible duplicates.
- list(REMOVE_DUPLICATES _java_libarch)
-
- foreach(_path ${ARGN})
- if(_path MATCHES "{libarch}")
- foreach(_libarch ${_java_libarch})
- string(REPLACE "{libarch}" "${_libarch}" _newpath "${_path}")
- if(EXISTS ${_newpath})
- list(APPEND ${_var} "${_newpath}")
- endif()
- endforeach()
- else()
- if(EXISTS ${_path})
- list(APPEND ${_var} "${_path}")
- endif()
- endif()
- endforeach()
-endmacro()
-
-#include(${CMAKE_CURRENT_LIST_DIR}/CMakeFindJavaCommon.cmake)
-INCLUDE (CMakeFindJavaCommon)
-
-# Save CMAKE_FIND_FRAMEWORK
-if(DEFINED CMAKE_FIND_FRAMEWORK)
- set(_JNI_CMAKE_FIND_FRAMEWORK ${CMAKE_FIND_FRAMEWORK})
-else()
- unset(_JNI_CMAKE_FIND_FRAMEWORK)
-endif()
-
-if(_JAVA_HOME_EXPLICIT)
- set(CMAKE_FIND_FRAMEWORK NEVER)
-endif()
-
-set(JAVA_AWT_LIBRARY_DIRECTORIES)
-if(_JAVA_HOME)
- JAVA_APPEND_LIBRARY_DIRECTORIES(JAVA_AWT_LIBRARY_DIRECTORIES
- ${_JAVA_HOME}/jre/lib/{libarch}
- ${_JAVA_HOME}/jre/lib
- ${_JAVA_HOME}/lib/{libarch}
- ${_JAVA_HOME}/lib
- ${_JAVA_HOME}
- )
-endif()
-get_filename_component(java_install_version
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit;CurrentVersion]" NAME)
-
-list(APPEND JAVA_AWT_LIBRARY_DIRECTORIES
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\1.4;JavaHome]/lib"
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\1.3;JavaHome]/lib"
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\${java_install_version};JavaHome]/lib"
- )
-JAVA_APPEND_LIBRARY_DIRECTORIES(JAVA_AWT_LIBRARY_DIRECTORIES
- /usr/java/lib
- /usr/java/jre/lib
- /usr/lib
- /usr/lib64
- /usr/local/lib
- /usr/local/lib64
- /usr/lib/jvm/java/lib
- /usr/lib64/jvm/java/lib
- /usr/lib/java/jre/lib/{libarch}
- /usr/lib64/java/jre/lib/{libarch}
- /usr/lib/jvm/jre/lib/{libarch}
- /usr/local/lib/java/jre/lib/{libarch}
- /usr/local/share/java/jre/lib/{libarch}
- /usr/lib/j2sdk1.4-sun/jre/lib/{libarch}
- /usr/lib/j2sdk1.5-sun/jre/lib/{libarch}
- /opt/sun-jdk-1.5.0.04/jre/lib/{libarch}
- /usr/lib/jvm/java-6-sun/jre/lib/{libarch}
- /usr/lib/jvm/java-1.5.0-sun/jre/lib/{libarch}
- /usr/lib/jvm/java-6-sun-1.6.0.00/jre/lib/{libarch} # can this one be removed according to #8821 ? Alex
- /usr/lib/jvm/java-6-openjdk/jre/lib/{libarch}
- /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre/lib/{libarch} # fedora
- # Debian specific paths for default JVM
- /usr/lib/jvm/default-java/jre/lib/{libarch}
- /usr/lib/jvm/default-java/jre/lib
- /usr/lib/jvm/default-java/lib
- # Arch Linux specific paths for default JVM
- /usr/lib/jvm/default/jre/lib/{libarch}
- /usr/lib/jvm/default/lib/{libarch}
- # Ubuntu specific paths for default JVM
- /usr/lib/jvm/java-8-openjdk-{libarch}/jre/lib/{libarch} # Ubuntu 15.10
- /usr/lib/jvm/java-7-openjdk-{libarch}/jre/lib/{libarch} # Ubuntu 15.10
- /usr/lib/jvm/java-6-openjdk-{libarch}/jre/lib/{libarch} # Ubuntu 15.10
- # OpenBSD specific paths for default JVM
- /usr/local/jdk-1.7.0/jre/lib/{libarch}
- /usr/local/jre-1.7.0/lib/{libarch}
- /usr/local/jdk-1.6.0/jre/lib/{libarch}
- /usr/local/jre-1.6.0/lib/{libarch}
- # SuSE specific paths for default JVM
- /usr/lib64/jvm/java/jre/lib/{libarch}
- /usr/lib64/jvm/jre/lib/{libarch}
- )
-
-set(JAVA_JVM_LIBRARY_DIRECTORIES)
-foreach(dir ${JAVA_AWT_LIBRARY_DIRECTORIES})
- list(APPEND JAVA_JVM_LIBRARY_DIRECTORIES
- "${dir}"
- "${dir}/client"
- "${dir}/server"
- # IBM SDK, Java Technology Edition, specific paths
- "${dir}/j9vm"
- "${dir}/default"
- )
-endforeach()
-
-set(JAVA_AWT_INCLUDE_DIRECTORIES)
-if(_JAVA_HOME)
- list(APPEND JAVA_AWT_INCLUDE_DIRECTORIES ${_JAVA_HOME}/include)
-endif()
-list(APPEND JAVA_AWT_INCLUDE_DIRECTORIES
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\1.4;JavaHome]/include"
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\1.3;JavaHome]/include"
- "[HKEY_LOCAL_MACHINE\\SOFTWARE\\JavaSoft\\Java Development Kit\\${java_install_version};JavaHome]/include"
-)
-
-JAVA_APPEND_LIBRARY_DIRECTORIES(JAVA_AWT_INCLUDE_DIRECTORIES
- ${_JAVA_HOME}/include
- /usr/include
- /usr/java/include
- /usr/local/include
- /usr/lib/java/include
- /usr/lib64/java/include
- /usr/local/lib/java/include
- /usr/lib/jvm/java/include
- /usr/lib/jvm/java-6-sun/include
- /usr/lib/jvm/java-1.5.0-sun/include
- /usr/lib/jvm/java-6-sun-1.6.0.00/include # can this one be removed according to #8821 ? Alex
- /usr/lib/jvm/java-6-openjdk/include
- /usr/lib/jvm/java-7-openjdk/include
- /usr/lib64/jvm/java-7-openjdk/include
- /usr/lib64/jvm/java-7-openjdk-amd64/include
- /usr/lib/jvm/java-8-openjdk-{libarch}/include # ubuntu 15.10
- /usr/lib/jvm/java-7-openjdk-{libarch}/include # ubuntu 15.10
- /usr/lib/jvm/java-6-openjdk-{libarch}/include # ubuntu 15.10
- /usr/local/share/java/include
- /usr/lib/j2sdk1.4-sun/include
- /usr/lib/j2sdk1.5-sun/include
- /opt/sun-jdk-1.5.0.04/include
- # Debian specific path for default JVM
- /usr/lib/jvm/default-java/include
- # Arch specific path for default JVM
- /usr/lib/jvm/default/include
- # OpenBSD specific path for default JVM
- /usr/local/jdk-1.7.0/include
- /usr/local/jdk-1.6.0/include
- # SuSE specific paths for default JVM
- /usr/lib64/jvm/java/include
- )
-
-foreach(JAVA_PROG "${JAVA_RUNTIME}" "${JAVA_COMPILE}" "${JAVA_ARCHIVE}")
- get_filename_component(jpath "${JAVA_PROG}" PATH)
- foreach(JAVA_INC_PATH ../include ../java/include ../share/java/include)
- if(EXISTS ${jpath}/${JAVA_INC_PATH})
- list(APPEND JAVA_AWT_INCLUDE_DIRECTORIES "${jpath}/${JAVA_INC_PATH}")
- endif()
- endforeach()
- foreach(JAVA_LIB_PATH
- ../lib ../jre/lib ../jre/lib/i386
- ../java/lib ../java/jre/lib ../java/jre/lib/i386
- ../share/java/lib ../share/java/jre/lib ../share/java/jre/lib/i386)
- if(EXISTS ${jpath}/${JAVA_LIB_PATH})
- list(APPEND JAVA_AWT_LIBRARY_DIRECTORIES "${jpath}/${JAVA_LIB_PATH}")
- endif()
- endforeach()
-endforeach()
-
-if(APPLE)
- if(CMAKE_FIND_FRAMEWORK STREQUAL "ONLY")
- set(_JNI_SEARCHES FRAMEWORK)
- elseif(CMAKE_FIND_FRAMEWORK STREQUAL "NEVER")
- set(_JNI_SEARCHES NORMAL)
- elseif(CMAKE_FIND_FRAMEWORK STREQUAL "LAST")
- set(_JNI_SEARCHES NORMAL FRAMEWORK)
- else()
- set(_JNI_SEARCHES FRAMEWORK NORMAL)
- endif()
- set(_JNI_FRAMEWORK_JVM NAMES JavaVM)
- set(_JNI_FRAMEWORK_JAWT "${_JNI_FRAMEWORK_JVM}")
-else()
- set(_JNI_SEARCHES NORMAL)
-endif()
-
-set(_JNI_NORMAL_JVM
- NAMES jvm
- PATHS ${JAVA_JVM_LIBRARY_DIRECTORIES}
- )
-
-set(_JNI_NORMAL_JAWT
- NAMES jawt
- PATHS ${JAVA_AWT_LIBRARY_DIRECTORIES}
- )
-
-foreach(search ${_JNI_SEARCHES})
- find_library(JAVA_JVM_LIBRARY ${_JNI_${search}_JVM})
- find_library(JAVA_AWT_LIBRARY ${_JNI_${search}_JAWT})
- if(JAVA_JVM_LIBRARY)
- break()
- endif()
-endforeach()
-unset(_JNI_SEARCHES)
-unset(_JNI_FRAMEWORK_JVM)
-unset(_JNI_FRAMEWORK_JAWT)
-unset(_JNI_NORMAL_JVM)
-unset(_JNI_NORMAL_JAWT)
-
-# Find headers matching the library.
-if("${JAVA_JVM_LIBRARY};${JAVA_AWT_LIBRARY};" MATCHES "(/JavaVM.framework|-framework JavaVM);")
- set(CMAKE_FIND_FRAMEWORK ONLY)
-else()
- set(CMAKE_FIND_FRAMEWORK NEVER)
-endif()
-
-# add in the include path
-find_path(JAVA_INCLUDE_PATH jni.h
- ${JAVA_AWT_INCLUDE_DIRECTORIES}
-)
-
-find_path(JAVA_INCLUDE_PATH2 NAMES jni_md.h jniport.h
- PATHS
- ${JAVA_INCLUDE_PATH}
- ${JAVA_INCLUDE_PATH}/darwin
- ${JAVA_INCLUDE_PATH}/win32
- ${JAVA_INCLUDE_PATH}/linux
- ${JAVA_INCLUDE_PATH}/freebsd
- ${JAVA_INCLUDE_PATH}/openbsd
- ${JAVA_INCLUDE_PATH}/solaris
- ${JAVA_INCLUDE_PATH}/hp-ux
- ${JAVA_INCLUDE_PATH}/alpha
- ${JAVA_INCLUDE_PATH}/aix
-)
-
-find_path(JAVA_AWT_INCLUDE_PATH jawt.h
- ${JAVA_INCLUDE_PATH}
-)
-
-# Restore CMAKE_FIND_FRAMEWORK
-if(DEFINED _JNI_CMAKE_FIND_FRAMEWORK)
- set(CMAKE_FIND_FRAMEWORK ${_JNI_CMAKE_FIND_FRAMEWORK})
- unset(_JNI_CMAKE_FIND_FRAMEWORK)
-else()
- unset(CMAKE_FIND_FRAMEWORK)
-endif()
-
-#include(${CMAKE_CURRENT_LIST_DIR}/FindPackageHandleStandardArgs.cmake)
-INCLUDE (FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(JNI DEFAULT_MSG JAVA_AWT_LIBRARY
- JAVA_JVM_LIBRARY
- JAVA_INCLUDE_PATH
- JAVA_INCLUDE_PATH2
- JAVA_AWT_INCLUDE_PATH)
-
-mark_as_advanced(
- JAVA_AWT_LIBRARY
- JAVA_JVM_LIBRARY
- JAVA_AWT_INCLUDE_PATH
- JAVA_INCLUDE_PATH
- JAVA_INCLUDE_PATH2
-)
-
-set(JNI_LIBRARIES
- ${JAVA_AWT_LIBRARY}
- ${JAVA_JVM_LIBRARY}
-)
-
-set(JNI_INCLUDE_DIRS
- ${JAVA_INCLUDE_PATH}
- ${JAVA_INCLUDE_PATH2}
- ${JAVA_AWT_INCLUDE_PATH}
-)
-
diff --git a/config/cmake/H5pubconf.h.in b/config/cmake/H5pubconf.h.in
index 273adb5..9e7b8b7 100644
--- a/config/cmake/H5pubconf.h.in
+++ b/config/cmake/H5pubconf.h.in
@@ -390,8 +390,13 @@
/* Define to 1 if you have the <szlib.h> header file. */
#cmakedefine H5_HAVE_SZLIB_H @H5_HAVE_SZLIB_H@
+#if defined(_WIN32) && !defined(H5_BUILT_AS_DYNAMIC_LIB)
+/* Not supported on WIN32 platforms with static linking */
+/* #undef H5_HAVE_THREADSAFE */
+#else
/* Define if we have thread safe support */
-#cmakedefine H5_HAVE_THREADSAFE @H5_HAVE_THREADSAFE@
+# cmakedefine H5_HAVE_THREADSAFE @H5_HAVE_THREADSAFE@
+#endif
/* Define if timezone is a global variable */
#cmakedefine H5_HAVE_TIMEZONE @H5_HAVE_TIMEZONE@
diff --git a/config/cmake/HDF5UseFortran.cmake b/config/cmake/HDF5UseFortran.cmake
index 6b77ca4..279e077 100644
--- a/config/cmake/HDF5UseFortran.cmake
+++ b/config/cmake/HDF5UseFortran.cmake
@@ -234,7 +234,7 @@ foreach (KIND ${VAR} )
set (pack_real_sizeof "${pack_real_sizeof} ${PROG_OUTPUT1},")
endforeach ()
-if (pack_int_sizeof STREQUAL "")
+if (pack_real_sizeof STREQUAL "")
message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
endif ()
@@ -376,11 +376,11 @@ macro (C_RUN FUNCTION_NAME SOURCE_CODE RETURN_VAR)
set (${RETURN_VAR} ${OUTPUT_VAR})
- #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
- #message ( "Test COMPILE_RESULT_VAR ${COMPILE_RESULT_VAR} ")
- #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
- #message ( "Test RUN_RESULT_VAR ${RUN_RESULT_VAR} ")
- #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
+ #message (STATUS "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
+ #message (STATUS "Test COMPILE_RESULT_VAR ${COMPILE_RESULT_VAR} ")
+ #message (STATUS "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
+ #message (STATUS "Test RUN_RESULT_VAR ${RUN_RESULT_VAR} ")
+ #message (STATUS "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
if (${COMPILE_RESULT_VAR})
if (${RUN_RESULT_VAR} MATCHES 1)
diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake
index 0a39568..4712f50 100644
--- a/config/cmake/HDFCompilerFlags.cmake
+++ b/config/cmake/HDFCompilerFlags.cmake
@@ -195,7 +195,12 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
# Append more extra warning flags that only gcc 6.x+ know about
if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 6.0)
- set (H5_CFLAGS4 "${H5_CFLAGS4} -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa")
+ set (H5_CFLAGS4 "${H5_CFLAGS4} -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa -Wnormalized")
+ endif ()
+
+ # Append more extra warning flags that only gcc 7.x+ know about
+ if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 7.0)
+ set (H5_CFLAGS4 "${H5_CFLAGS4} -Walloc-zero -Walloca -Wduplicated-branches -Wformat-overflow=2 -Wformat-truncation=2 -Wimplicit-fallthrough=5 -Wrestrict")
endif ()
endif ()
diff --git a/config/cmake/README.txt.cmake.in b/config/cmake/README.txt.cmake.in
index be6ddc1..b29d50b 100644
--- a/config/cmake/README.txt.cmake.in
+++ b/config/cmake/README.txt.cmake.in
@@ -34,9 +34,9 @@ utility should be installed.
To test the installation with the examples;
Create a directory to run the examples.
Copy HDF5Examples folder to this directory.
+ Copy CTestScript.cmake to this directory.
Copy HDF5_Examples.cmake to this directory.
Copy HDF5_Examples_options.cmake to this directory.
- Copy CTestScript.cmake to this directory.
The default source folder is defined as "HDF5Examples". It can be changed
with the CTEST_SOURCE_NAME script option.
The default installation folder is defined as "@CMAKE_INSTALL_PREFIX@".
diff --git a/config/cmake/UseJava.cmake b/config/cmake/UseJava.cmake
index 754d742..1f6b04c 100644
--- a/config/cmake/UseJava.cmake
+++ b/config/cmake/UseJava.cmake
@@ -1,437 +1,373 @@
# Distributed under the OSI-approved BSD 3-Clause License. See https://cmake.org/licensing for details.
-#.rst:
-# UseJava
-# -------
-#
-# Use Module for Java
-#
-# This file provides functions for Java. It is assumed that
-# FindJava.cmake has already been loaded. See FindJava.cmake for
-# information on how to load Java into your CMake project.
-#
-# ::
-#
-# add_jar(target_name
-# [SOURCES] source1 [source2 ...] [resource1 ...]
-# [INCLUDE_JARS jar1 [jar2 ...]]
-# [ENTRY_POINT entry]
-# [VERSION version]
-# [OUTPUT_NAME name]
-# [OUTPUT_DIR dir]
-# [GENERATE_NATIVE_HEADERS target [DESTINATION dir]]
-# )
-#
-# This command creates a <target_name>.jar. It compiles the given
-# source files (source) and adds the given resource files (resource) to
-# the jar file. Source files can be java files or listing files
-# (prefixed by '@'). If only resource files are given then just a jar file
-# is created. The list of include jars are added to the classpath when
-# compiling the java sources and also to the dependencies of the target.
-# INCLUDE_JARS also accepts other target names created by add_jar. For
-# backwards compatibility, jar files listed as sources are ignored (as
-# they have been since the first version of this module).
-#
-# The default OUTPUT_DIR can also be changed by setting the variable
-# CMAKE_JAVA_TARGET_OUTPUT_DIR.
-#
-# Optionally, using option GENERATE_NATIVE_HEADERS, native header files can be generated
-# for methods declared as native. These files provide the connective glue that allow your
-# Java and C code to interact. An INTERFACE target will be created for an easy usage
-# of generated files. Sub-option DESTINATION can be used to specify output directory for
-# generated header files.
-#
-# GENERATE_NATIVE_HEADERS option requires, at least, version 1.8 of the JDK.
-#
-# Additional instructions:
-#
-# ::
-#
-# To add compile flags to the target you can set these flags with
-# the following variable:
-#
-#
-#
-# ::
-#
-# set(CMAKE_JAVA_COMPILE_FLAGS -nowarn)
-#
-#
-#
-# ::
-#
-# To add a path or a jar file to the class path you can do this
-# with the CMAKE_JAVA_INCLUDE_PATH variable.
-#
-#
-#
-# ::
-#
-# set(CMAKE_JAVA_INCLUDE_PATH /usr/share/java/shibboleet.jar)
-#
-#
-#
-# ::
-#
-# To use a different output name for the target you can set it with:
-#
-#
-#
-# ::
-#
-# add_jar(foobar foobar.java OUTPUT_NAME shibboleet.jar)
-#
-#
-#
-# ::
-#
-# To use a different output directory than CMAKE_CURRENT_BINARY_DIR
-# you can set it with:
-#
-#
-#
-# ::
-#
-# add_jar(foobar foobar.java OUTPUT_DIR ${PROJECT_BINARY_DIR}/bin)
-#
-#
-#
-# ::
-#
-# To define an entry point in your jar you can set it with the ENTRY_POINT
-# named argument:
-#
-#
-#
-# ::
-#
-# add_jar(example ENTRY_POINT com/examples/MyProject/Main)
-#
-#
-#
-# ::
-#
-# To define a custom manifest for the jar, you can set it with the manifest
-# named argument:
-#
-#
-#
-# ::
-#
-# add_jar(example MANIFEST /path/to/manifest)
-#
-#
-#
-# ::
-#
-# To add a VERSION to the target output name you can set it using
-# the VERSION named argument to add_jar. This will create a jar file with the
-# name shibboleet-1.0.0.jar and will create a symlink shibboleet.jar
-# pointing to the jar with the version information.
-#
-#
-#
-# ::
-#
-# add_jar(shibboleet shibbotleet.java VERSION 1.2.0)
-#
-#
-#
-# ::
-#
-# If the target is a JNI library, utilize the following commands to
-# create a JNI symbolic link:
-#
-#
-#
-# ::
-#
-# set(CMAKE_JNI_TARGET TRUE)
-# add_jar(shibboleet shibbotleet.java VERSION 1.2.0)
-# install_jar(shibboleet ${LIB_INSTALL_DIR}/shibboleet)
-# install_jni_symlink(shibboleet ${JAVA_LIB_INSTALL_DIR})
-#
-#
-#
-# ::
-#
-# If a single target needs to produce more than one jar from its
-# java source code, to prevent the accumulation of duplicate class
-# files in subsequent jars, set/reset CMAKE_JAR_CLASSES_PREFIX prior
-# to calling the add_jar() function:
-#
-#
-#
-# ::
-#
-# set(CMAKE_JAR_CLASSES_PREFIX com/redhat/foo)
-# add_jar(foo foo.java)
-#
-#
-#
-# ::
-#
-# set(CMAKE_JAR_CLASSES_PREFIX com/redhat/bar)
-# add_jar(bar bar.java)
-#
-#
-#
-# ::
-#
-# For an optimum usage of option GENERATE_NATIVE_HEADERS, it is recommended to
-# include module JNI before any call to add_jar. The produced target for native
-# headers can then be used to compile C/C++ sources with command
-# target_link_libraries.
-#
-#
-# ::
-#
-# find_package(JNI)
-# add_jar(foo foo.java GENERATE_NATIVE_HEADERS foo-native)
-# add_library(bar bar.cpp)
-# target_link_libraries(bar PRIVATE foo-native)
-#
-#
-# Target Properties:
-#
-# ::
-#
-# The add_jar() function sets some target properties. You can get these
-# properties with the
-# get_property(TARGET <target_name> PROPERTY <propery_name>)
-# command.
-#
-#
-#
-# ::
-#
-# INSTALL_FILES The files which should be installed. This is used by
-# install_jar().
-# JNI_SYMLINK The JNI symlink which should be installed.
-# This is used by install_jni_symlink().
-# JAR_FILE The location of the jar file so that you can include
-# it.
-# CLASSDIR The directory where the class files can be found. For
-# example to use them with javah.
-#
-# ::
-#
-# find_jar(<VAR>
-# name | NAMES name1 [name2 ...]
-# [PATHS path1 [path2 ... ENV var]]
-# [VERSIONS version1 [version2]]
-# [DOC "cache documentation string"]
-# )
-#
-# This command is used to find a full path to the named jar. A cache
-# entry named by <VAR> is created to stor the result of this command.
-# If the full path to a jar is found the result is stored in the
-# variable and the search will not repeated unless the variable is
-# cleared. If nothing is found, the result will be <VAR>-NOTFOUND, and
-# the search will be attempted again next time find_jar is invoked with
-# the same variable. The name of the full path to a file that is
-# searched for is specified by the names listed after NAMES argument.
-# Additional search locations can be specified after the PATHS argument.
-# If you require special a version of a jar file you can specify it with
-# the VERSIONS argument. The argument after DOC will be used for the
-# documentation string in the cache.
-#
-# ::
-#
-# install_jar(target_name destination)
-# install_jar(target_name DESTINATION destination [COMPONENT component])
-#
-# This command installs the TARGET_NAME files to the given DESTINATION.
-# It should be called in the same scope as add_jar() or it will fail.
-#
-# Target Properties:
-#
-# ::
-#
-# The install_jar() function sets the INSTALL_DESTINATION target property
-# on jars so installed. This property holds the DESTINATION as described
-# above, and is used by install_jar_exports(). You can get this property
-# with the
-# get_property(TARGET <target_name> PROPERTY INSTALL_DESTINATION)
-# command.
-#
-#
-#
-# ::
-#
-# install_jni_symlink(target_name destination)
-# install_jni_symlink(target_name DESTINATION destination [COMPONENT component])
-#
-# This command installs the TARGET_NAME JNI symlinks to the given
-# DESTINATION. It should be called in the same scope as add_jar() or it
-# will fail.
-#
-# ::
-#
-# install_jar_exports(TARGETS jars...
-# [NAMESPACE <namespace>]
-# FILE <filename>
-# DESTINATION <dir> [COMPONENT <component>])
-#
-# This command installs a target export file ``<filename>`` for the named jar
-# targets to the given ``DESTINATION``. Its function is similar to that of
-# :command:`install(EXPORTS ...)`.
-#
-# ::
-#
-# export_jars(TARGETS jars...
-# [NAMESPACE <namespace>]
-# FILE <filename>)
-#
-# This command writes a target export file ``<filename>`` for the named jar
-# targets. Its function is similar to that of :command:`export(...)`.
-#
-# ::
-#
-# create_javadoc(<VAR>
-# PACKAGES pkg1 [pkg2 ...]
-# [SOURCEPATH <sourcepath>]
-# [CLASSPATH <classpath>]
-# [INSTALLPATH <install path>]
-# [DOCTITLE "the documentation title"]
-# [WINDOWTITLE "the title of the document"]
-# [AUTHOR TRUE|FALSE]
-# [USE TRUE|FALSE]
-# [VERSION TRUE|FALSE]
-# )
-#
-# Create java documentation based on files or packages. For more
-# details please read the javadoc manpage.
-#
-# There are two main signatures for create_javadoc. The first signature
-# works with package names on a path with source files:
-#
-# ::
-#
-# Example:
-# create_javadoc(my_example_doc
-# PACKAGES com.example.foo com.example.bar
-# SOURCEPATH "${CMAKE_CURRENT_SOURCE_DIR}"
-# CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
-# WINDOWTITLE "My example"
-# DOCTITLE "<h1>My example</h1>"
-# AUTHOR TRUE
-# USE TRUE
-# VERSION TRUE
-# )
-#
-#
-#
-# The second signature for create_javadoc works on a given list of
-# files.
-#
-# ::
-#
-# create_javadoc(<VAR>
-# FILES file1 [file2 ...]
-# [CLASSPATH <classpath>]
-# [INSTALLPATH <install path>]
-# [DOCTITLE "the documentation title"]
-# [WINDOWTITLE "the title of the document"]
-# [AUTHOR TRUE|FALSE]
-# [USE TRUE|FALSE]
-# [VERSION TRUE|FALSE]
-# )
-#
-#
-#
-# Example:
-#
-# ::
-#
-# create_javadoc(my_example_doc
-# FILES ${example_SRCS}
-# CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
-# WINDOWTITLE "My example"
-# DOCTITLE "<h1>My example</h1>"
-# AUTHOR TRUE
-# USE TRUE
-# VERSION TRUE
-# )
-#
-#
-#
-# Both signatures share most of the options. These options are the same
-# as what you can find in the javadoc manpage. Please look at the
-# manpage for CLASSPATH, DOCTITLE, WINDOWTITLE, AUTHOR, USE and VERSION.
-#
-# The documentation will be by default installed to
-#
-# ::
-#
-# ${CMAKE_INSTALL_PREFIX}/share/javadoc/<VAR>
-#
-#
-#
-# if you don't set the INSTALLPATH.
-#
-# ::
-#
-# create_javah(TARGET <target>
-# GENERATED_FILES <VAR>
-# CLASSES <class>...
-# [CLASSPATH <classpath>...]
-# [DEPENDS <depend>...]
-# [OUTPUT_NAME <path>|OUTPUT_DIR <path>]
-# )
-#
-# Create C header files from java classes. These files provide the connective glue
-# that allow your Java and C code to interact.
-#
-# This command will no longer be supported starting with version 10 of the JDK due
-# to the `suppression of javah tool <http://openjdk.java.net/jeps/313>`_.
-# Command ``add_jar(GENERATE_NATIVE_HEADERS)`` must be used instead.
-#
-# There are two main signatures for create_javah. The first signature
-# returns generated files through variable specified by GENERATED_FILES option:
-#
-# ::
-#
-# Example:
-# Create_javah(GENERATED_FILES files_headers
-# CLASSES org.cmake.HelloWorld
-# CLASSPATH hello.jar
-# )
-#
-#
-#
-# The second signature for create_javah creates a target which encapsulates
-# header files generation.
-#
-# ::
-#
-# Example:
-# Create_javah(TARGET target_headers
-# CLASSES org.cmake.HelloWorld
-# CLASSPATH hello.jar
-# )
-#
-#
-#
-# Both signatures share same options.
-#
-# ``CLASSES <class>...``
-# Specifies Java classes used to generate headers.
-#
-# ``CLASSPATH <classpath>...``
-# Specifies various paths to look up classes. Here .class files, jar files or targets
-# created by command add_jar can be used.
-#
-# ``DEPENDS <depend>...``
-# Targets on which the javah target depends
-#
-# ``OUTPUT_NAME <path>``
-# Concatenates the resulting header files for all the classes listed by option CLASSES
-# into <path>. Same behavior as option '-o' of javah tool.
-#
-# ``OUTPUT_DIR <path>``
-# Sets the directory where the header files will be generated. Same behavior as option
-# '-d' of javah tool. If not specified, ${CMAKE_CURRENT_BINARY_DIR} is used as output directory.
+#[=======================================================================[.rst:
+UseJava
+-------
+
+Use Module for Java
+
+This file provides functions for Java. It is assumed that
+:module:`FindJava` has already been loaded. See :module:`FindJava` for
+information on how to load Java into your CMake project.
+
+Creating And Installing JARs
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. code-block:: cmake
+
+ add_jar(<target_name>
+ [SOURCES] <source1> [<source2>...] [<resource1>...]
+ [INCLUDE_JARS <jar1> [<jar2>...]]
+ [ENTRY_POINT <entry>]
+ [VERSION <version>]
+ [OUTPUT_NAME <name>]
+ [OUTPUT_DIR <dir>]
+ [GENERATE_NATIVE_HEADERS <target> [DESTINATION <dir>]]
+ )
+
+This command creates a ``<target_name>.jar``. It compiles the given
+``<source>`` files and adds the given ``<resource>`` files to
+the jar file. Source files can be java files or listing files
+(prefixed by ``@``). If only resource files are given then just a jar file
+is created. The list of ``INCLUDE_JARS`` are added to the classpath when
+compiling the java sources and also to the dependencies of the target.
+``INCLUDE_JARS`` also accepts other target names created by ``add_jar()``.
+For backwards compatibility, jar files listed as sources are ignored (as
+they have been since the first version of this module).
+
+The default ``OUTPUT_DIR`` can also be changed by setting the variable
+``CMAKE_JAVA_TARGET_OUTPUT_DIR``.
+
+Optionally, using option ``GENERATE_NATIVE_HEADERS``, native header files can
+be generated for methods declared as native. These files provide the
+connective glue that allow your Java and C code to interact. An INTERFACE
+target will be created for an easy usage of generated files. Sub-option
+``DESTINATION`` can be used to specify the output directory for generated
+header files.
+
+``GENERATE_NATIVE_HEADERS`` option requires, at least, version 1.8 of the JDK.
+
+The ``add_jar()`` function sets the following target properties on
+``<target_name>``:
+
+``INSTALL_FILES``
+ The files which should be installed. This is used by ``install_jar()``.
+``JNI_SYMLINK``
+ The JNI symlink which should be installed. This is used by
+ ``install_jni_symlink()``.
+``JAR_FILE``
+ The location of the jar file so that you can include it.
+``CLASSDIR``
+ The directory where the class files can be found. For example to use them
+ with ``javah``.
+
+.. code-block:: cmake
+
+ install_jar(<target_name> <destination>)
+ install_jar(<target_name> DESTINATION <destination> [COMPONENT <component>])
+
+This command installs the ``<target_name>`` files to the given
+``<destination>``. It should be called in the same scope as ``add_jar()`` or
+it will fail.
+
+The ``install_jar()`` function sets the ``INSTALL_DESTINATION`` target
+property on jars so installed. This property holds the ``<destination>`` as
+described above, and is used by ``install_jar_exports()``. You can get this
+information with :command:`get_property` and the ``INSTALL_DESTINATION``
+property key.
+
+.. code-block:: cmake
+
+ install_jni_symlink(<target_name> <destination>)
+ install_jni_symlink(<target_name> DESTINATION <destination> [COMPONENT <component>])
+
+This command installs the ``<target_name>`` JNI symlinks to the given
+``<destination>``. It should be called in the same scope as ``add_jar()`` or
+it will fail.
+
+.. code-block:: cmake
+
+ install_jar_exports(TARGETS <jars>...
+ [NAMESPACE <namespace>]
+ FILE <filename>
+ DESTINATION <destination> [COMPONENT <component>])
+
+This command installs a target export file ``<filename>`` for the named jar
+targets to the given ``<destination>`` directory. Its function is similar to
+that of :command:`install(EXPORTS)`.
+
+.. code-block:: cmake
+
+ export_jars(TARGETS <jars>...
+ [NAMESPACE <namespace>]
+ FILE <filename>)
+
+This command writes a target export file ``<filename>`` for the named ``<jars>``
+targets. Its function is similar to that of :command:`export`.
+
+
+Examples
+""""""""
+
+To add compile flags to the target you can set these flags with the following
+variable:
+
+.. code-block:: cmake
+
+ set(CMAKE_JAVA_COMPILE_FLAGS -nowarn)
+
+
+To add a path or a jar file to the class path you can do this with the
+``CMAKE_JAVA_INCLUDE_PATH`` variable.
+
+.. code-block:: cmake
+
+ set(CMAKE_JAVA_INCLUDE_PATH /usr/share/java/shibboleet.jar)
+
+To use a different output name for the target you can set it with:
+
+.. code-block:: cmake
+
+ add_jar(foobar foobar.java OUTPUT_NAME shibboleet.jar)
+
+To use a different output directory than ``CMAKE_CURRENT_BINARY_DIR`` you can
+set it with:
+
+.. code-block:: cmake
+
+ add_jar(foobar foobar.java OUTPUT_DIR ${PROJECT_BINARY_DIR}/bin)
+
+To define an entry point in your jar you can set it with the ``ENTRY_POINT``
+named argument:
+
+.. code-block:: cmake
+
+ add_jar(example ENTRY_POINT com/examples/MyProject/Main)
+
+To define a custom manifest for the jar, you can set it with the ``MANIFEST``
+named argument:
+
+.. code-block:: cmake
+
+ add_jar(example MANIFEST /path/to/manifest)
+
+To add a version to the target output name you can set it using the ``VERSION``
+named argument to ``add_jar()``. The following example will create a jar file
+with the name ``shibboleet-1.0.0.jar`` and will create a symlink
+``shibboleet.jar`` pointing to the jar with the version information.
+
+.. code-block:: cmake
+
+ add_jar(shibboleet shibbotleet.java VERSION 1.2.0)
+
+If the target is a JNI library, utilize the following commands to
+create a JNI symbolic link:
+
+.. code-block:: cmake
+
+ set(CMAKE_JNI_TARGET TRUE)
+ add_jar(shibboleet shibbotleet.java VERSION 1.2.0)
+ install_jar(shibboleet ${LIB_INSTALL_DIR}/shibboleet)
+ install_jni_symlink(shibboleet ${JAVA_LIB_INSTALL_DIR})
+
+If a single target needs to produce more than one jar from its
+java source code, to prevent the accumulation of duplicate class
+files in subsequent jars, set/reset ``CMAKE_JAR_CLASSES_PREFIX`` prior
+to calling the ``add_jar()`` function:
+
+.. code-block:: cmake
+
+ set(CMAKE_JAR_CLASSES_PREFIX com/redhat/foo)
+ add_jar(foo foo.java)
+
+ set(CMAKE_JAR_CLASSES_PREFIX com/redhat/bar)
+ add_jar(bar bar.java)
+
+For an optimum usage of option ``GENERATE_NATIVE_HEADERS``, it is recommended to
+include module JNI before any call to ``add_jar()``. The produced target for
+native headers can then be used to compile C/C++ sources with the
+:command:`target_link_libraries` command.
+
+.. code-block:: cmake
+
+ find_package(JNI)
+ add_jar(foo foo.java GENERATE_NATIVE_HEADERS foo-native)
+ add_library(bar bar.cpp)
+ target_link_libraries(bar PRIVATE foo-native)
+
+
+Finding JARs
+^^^^^^^^^^^^
+
+.. code-block:: cmake
+
+ find_jar(<VAR>
+ <name> | NAMES <name1> [<name2>...]
+ [PATHS <path1> [<path2>... ENV <var>]]
+ [VERSIONS <version1> [<version2>]]
+ [DOC "cache documentation string"]
+ )
+
+This command is used to find a full path to the named jar. A cache
+entry named by ``<VAR>`` is created to store the result of this command.
+If the full path to a jar is found the result is stored in the
+variable and the search will not repeated unless the variable is
+cleared. If nothing is found, the result will be ``<VAR>-NOTFOUND``, and
+the search will be attempted again next time ``find_jar()`` is invoked with
+the same variable. The name of the full path to a file that is
+searched for is specified by the names listed after ``NAMES`` argument.
+Additional search locations can be specified after the ``PATHS`` argument.
+If you require special a version of a jar file you can specify it with
+the ``VERSIONS`` argument. The argument after ``DOC`` will be used for the
+documentation string in the cache.
+
+
+Javadoc
+^^^^^^^
+
+The ``create_javadoc()`` command can be used to create java documentation
+based on files or packages. For more details please read the javadoc manpage.
+
+There are two main signatures for ``create_javadoc()``. The first signature
+works with package names on a path with source files.
+
+.. code-block:: cmake
+
+ create_javadoc(<VAR>
+ PACKAGES <pkg1> [<pkg2>...]
+ [SOURCEPATH <sourcepath>]
+ [CLASSPATH <classpath>]
+ [INSTALLPATH <install path>]
+ [DOCTITLE "the documentation title"]
+ [WINDOWTITLE "the title of the document"]
+ [AUTHOR TRUE|FALSE]
+ [USE TRUE|FALSE]
+ [VERSION TRUE|FALSE]
+ )
+
+For example:
+
+.. code-block:: cmake
+
+ create_javadoc(my_example_doc
+ PACKAGES com.example.foo com.example.bar
+ SOURCEPATH "${CMAKE_CURRENT_SOURCE_DIR}"
+ CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
+ WINDOWTITLE "My example"
+ DOCTITLE "<h1>My example</h1>"
+ AUTHOR TRUE
+ USE TRUE
+ VERSION TRUE
+ )
+
+The second signature for ``create_javadoc()`` works on a given list of
+files.
+
+.. code-block:: cmake
+
+ create_javadoc(<VAR>
+ FILES <file1> [<file2>...]
+ [CLASSPATH <classpath>]
+ [INSTALLPATH <install path>]
+ [DOCTITLE "the documentation title"]
+ [WINDOWTITLE "the title of the document"]
+ [AUTHOR TRUE|FALSE]
+ [USE TRUE|FALSE]
+ [VERSION TRUE|FALSE]
+ )
+
+For example:
+
+.. code-block:: cmake
+
+ create_javadoc(my_example_doc
+ FILES ${example_SRCS}
+ CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
+ WINDOWTITLE "My example"
+ DOCTITLE "<h1>My example</h1>"
+ AUTHOR TRUE
+ USE TRUE
+ VERSION TRUE
+ )
+
+Both signatures share most of the options. These options are the same
+as what you can find in the javadoc manpage. Please look at the
+manpage for ``CLASSPATH``, ``DOCTITLE``, ``WINDOWTITLE``, ``AUTHOR``, ``USE``
+and ``VERSION``.
+
+If you don't set the ``INSTALLPATH``, then by default the documentation will
+be installed to :
+
+::
+
+ ${CMAKE_INSTALL_PREFIX}/share/javadoc/<VAR>
+
+
+Header Generation
+^^^^^^^^^^^^^^^^^
+
+.. code-block:: cmake
+
+ create_javah(TARGET <target> | GENERATED_FILES <VAR>
+ CLASSES <class>...
+ [CLASSPATH <classpath>...]
+ [DEPENDS <depend>...]
+ [OUTPUT_NAME <path>|OUTPUT_DIR <path>]
+ )
+
+Create C header files from java classes. These files provide the connective glue
+that allow your Java and C code to interact.
+
+.. deprecated:: 3.11
+
+.. note::
+
+ This command will no longer be supported starting with version 10 of the JDK
+ due to the `suppression of javah tool <http://openjdk.java.net/jeps/313>`_.
+ The ``add_jar(GENERATE_NATIVE_HEADERS)`` command should be used instead.
+
+There are two main signatures for ``create_javah()``. The first signature
+returns generated files through variable specified by the ``GENERATED_FILES``
+option. For example:
+
+.. code-block:: cmake
+
+ create_javah(GENERATED_FILES files_headers
+ CLASSES org.cmake.HelloWorld
+ CLASSPATH hello.jar
+ )
+
+The second signature for ``create_javah()`` creates a target which encapsulates
+header files generation. E.g.
+
+.. code-block:: cmake
+
+ create_javah(TARGET target_headers
+ CLASSES org.cmake.HelloWorld
+ CLASSPATH hello.jar
+ )
+
+Both signatures share same options.
+
+``CLASSES <class>...``
+ Specifies Java classes used to generate headers.
+
+``CLASSPATH <classpath>...``
+ Specifies various paths to look up classes. Here .class files, jar files or
+ targets created by command add_jar can be used.
+
+``DEPENDS <depend>...``
+ Targets on which the javah target depends.
+
+``OUTPUT_NAME <path>``
+ Concatenates the resulting header files for all the classes listed by option
+ ``CLASSES`` into ``<path>``. Same behavior as option ``-o`` of javah tool.
+
+``OUTPUT_DIR <path>``
+ Sets the directory where the header files will be generated. Same behavior
+ as option ``-d`` of javah tool. If not specified,
+ :variable:`CMAKE_CURRENT_BINARY_DIR` is used as the output directory.
+#]=======================================================================]
include(CMakeParseArguments)
@@ -446,7 +382,7 @@ function (__java_copy_file src dest comment)
endfunction ()
function(__java_lcat VAR)
- foreach(_line ${ARGN})
+ foreach(_line IN LISTS ARGN)
string(APPEND ${VAR} "${_line}\n")
endforeach()
@@ -568,7 +504,7 @@ function(add_jar _TARGET_NAME)
set(CMAKE_JAVA_INCLUDE_FLAG_SEP ":")
endif()
- foreach (JAVA_INCLUDE_DIR ${CMAKE_JAVA_INCLUDE_PATH})
+ foreach (JAVA_INCLUDE_DIR IN LISTS CMAKE_JAVA_INCLUDE_PATH)
string(APPEND CMAKE_JAVA_INCLUDE_PATH_FINAL "${CMAKE_JAVA_INCLUDE_FLAG_SEP}${JAVA_INCLUDE_DIR}")
endforeach()
@@ -592,7 +528,7 @@ function(add_jar _TARGET_NAME)
set(_JAVA_COMPILE_DEPENDS)
set(_JAVA_RESOURCE_FILES)
set(_JAVA_RESOURCE_FILES_RELATIVE)
- foreach(_JAVA_SOURCE_FILE ${_JAVA_SOURCE_FILES})
+ foreach(_JAVA_SOURCE_FILE IN LISTS _JAVA_SOURCE_FILES)
get_filename_component(_JAVA_EXT ${_JAVA_SOURCE_FILE} EXT)
get_filename_component(_JAVA_FILE ${_JAVA_SOURCE_FILE} NAME_WE)
get_filename_component(_JAVA_PATH ${_JAVA_SOURCE_FILE} PATH)
@@ -607,7 +543,7 @@ function(add_jar _TARGET_NAME)
file(RELATIVE_PATH _JAVA_REL_SOURCE_PATH ${CMAKE_CURRENT_SOURCE_DIR} ${_JAVA_FULL})
string(LENGTH ${_JAVA_REL_BINARY_PATH} _BIN_LEN)
string(LENGTH ${_JAVA_REL_SOURCE_PATH} _SRC_LEN)
- if (${_BIN_LEN} LESS ${_SRC_LEN})
+ if (_BIN_LEN LESS _SRC_LEN)
set(_JAVA_REL_PATH ${_JAVA_REL_BINARY_PATH})
else ()
set(_JAVA_REL_PATH ${_JAVA_REL_SOURCE_PATH})
@@ -637,14 +573,14 @@ function(add_jar _TARGET_NAME)
endif ()
endforeach()
- foreach(_JAVA_INCLUDE_JAR ${_add_jar_INCLUDE_JARS})
+ foreach(_JAVA_INCLUDE_JAR IN LISTS _add_jar_INCLUDE_JARS)
if (TARGET ${_JAVA_INCLUDE_JAR})
get_target_property(_JAVA_JAR_PATH ${_JAVA_INCLUDE_JAR} JAR_FILE)
if (_JAVA_JAR_PATH)
string(APPEND CMAKE_JAVA_INCLUDE_PATH_FINAL "${CMAKE_JAVA_INCLUDE_FLAG_SEP}${_JAVA_JAR_PATH}")
list(APPEND CMAKE_JAVA_INCLUDE_PATH ${_JAVA_JAR_PATH})
list(APPEND _JAVA_DEPENDS ${_JAVA_INCLUDE_JAR})
- list(APPEND _JAVA_COMPILE_DEPENDS ${_JAVA_INCLUDE_JAR})
+ list(APPEND _JAVA_COMPILE_DEPENDS ${_JAVA_JAR_PATH})
else ()
message(SEND_ERROR "add_jar: INCLUDE_JARS target ${_JAVA_INCLUDE_JAR} is not a jar")
endif ()
@@ -705,7 +641,7 @@ function(add_jar _TARGET_NAME)
# create the jar file
set(_JAVA_JAR_OUTPUT_PATH
- ${_add_jar_OUTPUT_DIR}/${_JAVA_TARGET_OUTPUT_NAME})
+ "${_add_jar_OUTPUT_DIR}/${_JAVA_TARGET_OUTPUT_NAME}")
if (CMAKE_JNI_TARGET)
add_custom_command(
OUTPUT ${_JAVA_JAR_OUTPUT_PATH}
@@ -800,7 +736,8 @@ function(add_jar _TARGET_NAME)
# this INTERFACE library depends on jar generation
add_dependencies (${_GENERATE_NATIVE_HEADERS_TARGET} ${_TARGET_NAME})
- set_property (DIRECTORY PROPERTY ADDITIONAL_MAKE_CLEAN_FILES "${_GENERATE_NATIVE_HEADERS_OUTPUT_DIR}")
+ set_property (DIRECTORY APPEND PROPERTY ADDITIONAL_CLEAN_FILES
+ "${_GENERATE_NATIVE_HEADERS_OUTPUT_DIR}")
endif()
endfunction()
@@ -903,15 +840,15 @@ function (find_jar VARIABLE)
set(_state "name")
- foreach (arg ${ARGN})
- if (${_state} STREQUAL "name")
- if (${arg} STREQUAL "VERSIONS")
+ foreach (arg IN LISTS ARGN)
+ if (_state STREQUAL "name")
+ if (arg STREQUAL "VERSIONS")
set(_state "versions")
- elseif (${arg} STREQUAL "NAMES")
+ elseif (arg STREQUAL "NAMES")
set(_state "names")
- elseif (${arg} STREQUAL "PATHS")
+ elseif (arg STREQUAL "PATHS")
set(_state "paths")
- elseif (${arg} STREQUAL "DOC")
+ elseif (arg STREQUAL "DOC")
set(_state "doc")
else ()
set(_jar_names ${arg})
@@ -919,22 +856,22 @@ function (find_jar VARIABLE)
set(_jar_doc "Finding ${arg} jar")
endif ()
endif ()
- elseif (${_state} STREQUAL "versions")
- if (${arg} STREQUAL "NAMES")
+ elseif (_state STREQUAL "versions")
+ if (arg STREQUAL "NAMES")
set(_state "names")
- elseif (${arg} STREQUAL "PATHS")
+ elseif (arg STREQUAL "PATHS")
set(_state "paths")
- elseif (${arg} STREQUAL "DOC")
+ elseif (arg STREQUAL "DOC")
set(_state "doc")
else ()
set(_jar_versions ${_jar_versions} ${arg})
endif ()
- elseif (${_state} STREQUAL "names")
- if (${arg} STREQUAL "VERSIONS")
+ elseif (_state STREQUAL "names")
+ if (arg STREQUAL "VERSIONS")
set(_state "versions")
- elseif (${arg} STREQUAL "PATHS")
+ elseif (arg STREQUAL "PATHS")
set(_state "paths")
- elseif (${arg} STREQUAL "DOC")
+ elseif (arg STREQUAL "DOC")
set(_state "doc")
else ()
set(_jar_names ${_jar_names} ${arg})
@@ -942,22 +879,22 @@ function (find_jar VARIABLE)
set(_jar_doc "Finding ${arg} jar")
endif ()
endif ()
- elseif (${_state} STREQUAL "paths")
- if (${arg} STREQUAL "VERSIONS")
+ elseif (_state STREQUAL "paths")
+ if (arg STREQUAL "VERSIONS")
set(_state "versions")
- elseif (${arg} STREQUAL "NAMES")
+ elseif (arg STREQUAL "NAMES")
set(_state "names")
- elseif (${arg} STREQUAL "DOC")
+ elseif (arg STREQUAL "DOC")
set(_state "doc")
else ()
set(_jar_paths ${_jar_paths} ${arg})
endif ()
- elseif (${_state} STREQUAL "doc")
- if (${arg} STREQUAL "VERSIONS")
+ elseif (_state STREQUAL "doc")
+ if (arg STREQUAL "VERSIONS")
set(_state "versions")
- elseif (${arg} STREQUAL "NAMES")
+ elseif (arg STREQUAL "NAMES")
set(_state "names")
- elseif (${arg} STREQUAL "PATHS")
+ elseif (arg STREQUAL "PATHS")
set(_state "paths")
else ()
set(_jar_doc ${arg})
@@ -969,8 +906,8 @@ function (find_jar VARIABLE)
message(FATAL_ERROR "find_jar: No name to search for given")
endif ()
- foreach (jar_name ${_jar_names})
- foreach (version ${_jar_versions})
+ foreach (jar_name IN LISTS _jar_names)
+ foreach (version IN LISTS _jar_versions)
set(_jar_files ${_jar_files} ${jar_name}-${version}.jar)
endforeach ()
set(_jar_files ${_jar_files} ${jar_name}.jar)
@@ -998,301 +935,301 @@ function(create_javadoc _target)
set(_state "package")
- foreach (arg ${ARGN})
- if (${_state} STREQUAL "package")
- if (${arg} STREQUAL "PACKAGES")
+ foreach (arg IN LISTS ARGN)
+ if (_state STREQUAL "package")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_packages ${arg})
set(_state "packages")
endif ()
- elseif (${_state} STREQUAL "packages")
- if (${arg} STREQUAL "FILES")
+ elseif (_state STREQUAL "packages")
+ if (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
list(APPEND _javadoc_packages ${arg})
endif ()
- elseif (${_state} STREQUAL "files")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "files")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
list(APPEND _javadoc_files ${arg})
endif ()
- elseif (${_state} STREQUAL "sourcepath")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "sourcepath")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
list(APPEND _javadoc_sourcepath ${arg})
endif ()
- elseif (${_state} STREQUAL "classpath")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "classpath")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
- set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
+ set(_state "sourcepath")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
list(APPEND _javadoc_classpath ${arg})
endif ()
- elseif (${_state} STREQUAL "installpath")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "installpath")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_installpath ${arg})
endif ()
- elseif (${_state} STREQUAL "doctitle")
+ elseif (_state STREQUAL "doctitle")
if (${arg} STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_doctitle ${arg})
endif ()
- elseif (${_state} STREQUAL "windowtitle")
+ elseif (_state STREQUAL "windowtitle")
if (${arg} STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_windowtitle ${arg})
endif ()
- elseif (${_state} STREQUAL "author")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "author")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_author ${arg})
endif ()
- elseif (${_state} STREQUAL "use")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "use")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_use ${arg})
endif ()
- elseif (${_state} STREQUAL "version")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "version")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "OVERVIEW")
+ elseif (arg STREQUAL "OVERVIEW")
set(_state "overview")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
set(_javadoc_version ${arg})
endif ()
- elseif (${_state} STREQUAL "overview")
- if (${arg} STREQUAL "PACKAGES")
+ elseif (_state STREQUAL "overview")
+ if (arg STREQUAL "PACKAGES")
set(_state "packages")
- elseif (${arg} STREQUAL "FILES")
+ elseif (arg STREQUAL "FILES")
set(_state "files")
- elseif (${arg} STREQUAL "SOURCEPATH")
+ elseif (arg STREQUAL "SOURCEPATH")
set(_state "sourcepath")
- elseif (${arg} STREQUAL "CLASSPATH")
+ elseif (arg STREQUAL "CLASSPATH")
set(_state "classpath")
- elseif (${arg} STREQUAL "INSTALLPATH")
+ elseif (arg STREQUAL "INSTALLPATH")
set(_state "installpath")
- elseif (${arg} STREQUAL "DOCTITLE")
+ elseif (arg STREQUAL "DOCTITLE")
set(_state "doctitle")
- elseif (${arg} STREQUAL "WINDOWTITLE")
+ elseif (arg STREQUAL "WINDOWTITLE")
set(_state "windowtitle")
- elseif (${arg} STREQUAL "AUTHOR")
+ elseif (arg STREQUAL "AUTHOR")
set(_state "author")
- elseif (${arg} STREQUAL "USE")
+ elseif (arg STREQUAL "USE")
set(_state "use")
- elseif (${arg} STREQUAL "VERSION")
+ elseif (arg STREQUAL "VERSION")
set(_state "version")
else ()
- list(APPEND _javadoc_overview ${arg})
+ set(_javadoc_overview ${arg})
endif ()
endif ()
endforeach ()
@@ -1302,7 +1239,7 @@ function(create_javadoc _target)
if (_javadoc_sourcepath)
set(_start TRUE)
- foreach(_path ${_javadoc_sourcepath})
+ foreach(_path IN LISTS _javadoc_sourcepath)
if (_start)
set(_sourcepath ${_path})
set(_start FALSE)
@@ -1315,7 +1252,7 @@ function(create_javadoc _target)
if (_javadoc_overview)
set(_start TRUE)
- foreach(_path ${_javadoc_overview})
+ foreach(_path IN LISTS _javadoc_overview)
if (_start)
set(_overview ${_path})
set(_start FALSE)
@@ -1328,7 +1265,7 @@ function(create_javadoc _target)
if (_javadoc_classpath)
set(_start TRUE)
- foreach(_path ${_javadoc_classpath})
+ foreach(_path IN LISTS _javadoc_classpath)
if (_start)
set(_classpath ${_path})
set(_start FALSE)
@@ -1495,7 +1432,7 @@ function(export_jars)
# Set content of generated exports file
string(REPLACE ";" " " __targets__ "${_export_jars_TARGETS}")
set(__targetdefs__ "")
- foreach(_target ${_export_jars_TARGETS})
+ foreach(_target IN LISTS _export_jars_TARGETS)
get_target_property(_jarpath ${_target} JAR_FILE)
get_filename_component(_jarpath ${_jarpath} PATH)
__java_export_jar(__targetdefs__ ${_target} "${_jarpath}")
@@ -1533,7 +1470,7 @@ function(install_jar_exports)
endif()
# Determine relative path from installed export file to install prefix
- if(IS_ABSOLUTE ${_install_jar_exports_DESTINATION})
+ if(IS_ABSOLUTE "${_install_jar_exports_DESTINATION}")
file(RELATIVE_PATH _relpath
${_install_jar_exports_DESTINATION}
${CMAKE_INSTALL_PREFIX}
@@ -1552,7 +1489,7 @@ function(install_jar_exports)
# Set content of generated exports file
string(REPLACE ";" " " __targets__ "${_install_jar_exports_TARGETS}")
set(__targetdefs__ "set(_prefix \${CMAKE_CURRENT_LIST_DIR}/${_relpath})\n\n")
- foreach(_target ${_install_jar_exports_TARGETS})
+ foreach(_target IN LISTS _install_jar_exports_TARGETS)
get_target_property(_dir ${_target} INSTALL_DESTINATION)
__java_export_jar(__targetdefs__ ${_target} "\${_prefix}/${_dir}")
endforeach()
diff --git a/config/cmake/UseJavaClassFilelist.cmake b/config/cmake/UseJavaClassFilelist.cmake
index 4420550..b98276f 100644
--- a/config/cmake/UseJavaClassFilelist.cmake
+++ b/config/cmake/UseJavaClassFilelist.cmake
@@ -1,16 +1,17 @@
# Distributed under the OSI-approved BSD 3-Clause License. See https://cmake.org/licensing for details.
-#.rst:
-# UseJavaClassFilelist
-# --------------------
-#
-#
-#
-#
-#
-# This script create a list of compiled Java class files to be added to
-# a jar file. This avoids including cmake files which get created in
-# the binary directory.
+#[=======================================================================[.rst:
+UseJavaClassFilelist
+--------------------
+
+
+
+
+
+This script create a list of compiled Java class files to be added to
+a jar file. This avoids including cmake files which get created in
+the binary directory.
+#]=======================================================================]
if (CMAKE_JAVA_CLASS_OUTPUT_PATH)
if (EXISTS "${CMAKE_JAVA_CLASS_OUTPUT_PATH}")
diff --git a/config/cmake/UseJavaSymlinks.cmake b/config/cmake/UseJavaSymlinks.cmake
index cd73348..a4db5c1 100644
--- a/config/cmake/UseJavaSymlinks.cmake
+++ b/config/cmake/UseJavaSymlinks.cmake
@@ -1,14 +1,15 @@
# Distributed under the OSI-approved BSD 3-Clause License. See https://cmake.org/licensing for details.
-#.rst:
-# UseJavaSymlinks
-# ---------------
-#
-#
-#
-#
-#
-# Helper script for UseJava.cmake
+#[=======================================================================[.rst:
+UseJavaSymlinks
+---------------
+
+
+
+
+
+Helper script for UseJava.cmake
+#]=======================================================================]
if (UNIX AND _JAVA_TARGET_OUTPUT_LINK)
if (_JAVA_TARGET_OUTPUT_NAME)
diff --git a/config/cmake/cacheinit.cmake b/config/cmake/cacheinit.cmake
index d5c5e52..5254115 100644
--- a/config/cmake/cacheinit.cmake
+++ b/config/cmake/cacheinit.cmake
@@ -19,6 +19,8 @@ set (CMAKE_INSTALL_FRAMEWORK_PREFIX "Library/Frameworks" CACHE STRING "Framework
set (HDF_PACKAGE_EXT "" CACHE STRING "Name of HDF package extension" FORCE)
+set (HDF_PACKAGE_NAMESPACE "hdf5::" CACHE STRING "Name for HDF package namespace (can be empty)" FORCE)
+
set (HDF5_BUILD_FORTRAN ON CACHE BOOL "Build FORTRAN support" FORCE)
set (HDF5_BUILD_GENERATORS ON CACHE BOOL "Build Test Generators" FORCE)
diff --git a/config/cmake/hdf5-config-version.cmake.in b/config/cmake/hdf5-config-version.cmake.in
index 8e16725..575c1ab 100644
--- a/config/cmake/hdf5-config-version.cmake.in
+++ b/config/cmake/hdf5-config-version.cmake.in
@@ -21,38 +21,38 @@
set (PACKAGE_VERSION "@HDF5_VERSION_STRING@")
-if("${PACKAGE_VERSION}" VERSION_LESS "${PACKAGE_FIND_VERSION}" )
+if(PACKAGE_VERSION VERSION_LESS PACKAGE_FIND_VERSION)
set(PACKAGE_VERSION_COMPATIBLE FALSE)
-else ()
- if ("${PACKAGE_FIND_VERSION_MAJOR}" STREQUAL "@H5_VERS_MAJOR@")
+else()
+ if("@H5_VERS_MAJOR@.@H5_VERS_MINOR@" MATCHES "^([0-9]+)\\.([0-9]+)")
+ set(CVF_VERSION_MAJOR "${CMAKE_MATCH_1}")
+ set(CVF_VERSION_MINOR "${CMAKE_MATCH_2}")
+ else()
+ set(CVF_VERSION_MAJOR "@HDF5_VERSION_STRING@")
+ set(CVF_VERSION_MINOR "")
+ endif()
+
+ if((PACKAGE_FIND_VERSION_MAJOR STREQUAL CVF_VERSION_MAJOR) AND
+ (PACKAGE_FIND_VERSION_MINOR STREQUAL CVF_VERSION_MINOR))
+ set(PACKAGE_VERSION_COMPATIBLE TRUE)
+ else()
+ set(PACKAGE_VERSION_COMPATIBLE FALSE)
+ endif()
+
+ if(PACKAGE_FIND_VERSION STREQUAL PACKAGE_VERSION)
+ set(PACKAGE_VERSION_EXACT TRUE)
+ endif()
+endif()
- # exact match for version @H5_VERS_MAJOR@.@H5_VERS_MINOR@
- if ("${PACKAGE_FIND_VERSION_MINOR}" STREQUAL "@H5_VERS_MINOR@")
-
- # compatible with any version @H5_VERS_MAJOR@.@H5_VERS_MINOR@.x
- set (PACKAGE_VERSION_COMPATIBLE TRUE)
-
- if ("${PACKAGE_FIND_VERSION_PATCH}" STREQUAL "@H5_VERS_RELEASE@")
- set (PACKAGE_VERSION_EXACT TRUE)
-
- if ("${PACKAGE_FIND_VERSION_TWEAK}" STREQUAL "@H5_VERS_SUBRELEASE@")
- # not using this yet
- endif ()
- endif ()
- else ()
- set (PACKAGE_VERSION_COMPATIBLE FALSE)
- endif ()
- endif ()
-endif ()
# if the installed or the using project don't have CMAKE_SIZEOF_VOID_P set, ignore it:
-if("${CMAKE_SIZEOF_VOID_P}" STREQUAL "" OR "@CMAKE_SIZEOF_VOID_P@" STREQUAL "")
+if("${CMAKE_SIZEOF_VOID_P}" STREQUAL "" OR "@CMAKE_SIZEOF_VOID_P@" STREQUAL "")
return()
-endif ()
+endif()
# check that the installed version has the same 32/64bit-ness as the one which is currently searching:
-if(NOT "${CMAKE_SIZEOF_VOID_P}" STREQUAL "@CMAKE_SIZEOF_VOID_P@")
+if(NOT CMAKE_SIZEOF_VOID_P STREQUAL "@CMAKE_SIZEOF_VOID_P@")
math(EXPR installedBits "@CMAKE_SIZEOF_VOID_P@ * 8")
set(PACKAGE_VERSION "${PACKAGE_VERSION} (${installedBits}bit)")
set(PACKAGE_VERSION_UNSUITABLE TRUE)
-endif ()
+endif()
diff --git a/config/cmake/hdf5-config.cmake.in b/config/cmake/hdf5-config.cmake.in
index e687a58..1803117 100644
--- a/config/cmake/hdf5-config.cmake.in
+++ b/config/cmake/hdf5-config.cmake.in
@@ -38,13 +38,17 @@ set (${HDF5_PACKAGE_NAME}_BUILD_CPP_LIB @HDF5_BUILD_CPP_LIB@)
set (${HDF5_PACKAGE_NAME}_BUILD_JAVA @HDF5_BUILD_JAVA@)
set (${HDF5_PACKAGE_NAME}_BUILD_TOOLS @HDF5_BUILD_TOOLS@)
set (${HDF5_PACKAGE_NAME}_BUILD_HL_LIB @HDF5_BUILD_HL_LIB@)
+set (${HDF5_PACKAGE_NAME}_ENABLE_THREADSAFE @HDF5_ENABLE_THREADSAFE@)
set (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT @HDF5_ENABLE_Z_LIB_SUPPORT@)
set (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT @HDF5_ENABLE_SZIP_SUPPORT@)
set (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_ENCODING @HDF5_ENABLE_SZIP_ENCODING@)
-set (${HDF5_PACKAGE_NAME}_BUILD_SHARED_LIBS @BUILD_SHARED_LIBS@)
+set (${HDF5_PACKAGE_NAME}_BUILD_SHARED_LIBS @H5_ENABLE_SHARED_LIB@)
+set (${HDF5_PACKAGE_NAME}_BUILD_STATIC_LIBS @H5_ENABLE_STATIC_LIB@)
set (${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS @HDF5_PACKAGE_EXTLIBS@)
set (${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES @HDF5_LIBRARIES_TO_EXPORT@)
set (${HDF5_PACKAGE_NAME}_TOOLSET "@CMAKE_GENERATOR_TOOLSET@")
+set (${HDF5_PACKAGE_NAME}_DEFAULT_API_VERSION "@DEFAULT_API_VERSION@")
+set (${HDF5_PACKAGE_NAME}_PARALLEL_FILTERED_WRITES "@PARALLEL_FILTERED_WRITES@")
#-----------------------------------------------------------------------------
# Dependencies
@@ -105,10 +109,10 @@ set (HDF5_VERSION_MINOR @HDF5_VERSION_MINOR@)
# project which has already built hdf5 as a subproject
#-----------------------------------------------------------------------------
if (NOT TARGET "@HDF5_PACKAGE@")
- if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "zlib")
+ if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS)
include (@PACKAGE_SHARE_INSTALL_DIR@/@ZLIB_PACKAGE_NAME@/@ZLIB_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
endif ()
- if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "szip")
+ if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS)
include (@PACKAGE_SHARE_INSTALL_DIR@/@SZIP_PACKAGE_NAME@/@SZIP_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
endif ()
include (@PACKAGE_SHARE_INSTALL_DIR@/@HDF5_PACKAGE@/@HDF5_PACKAGE@@HDF_PACKAGE_EXT@-targets.cmake)
@@ -116,22 +120,28 @@ endif ()
# Handle default component(static) :
if (NOT ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
+ if (${HDF5_PACKAGE_NAME}_BUILD_STATIC_LIBS)
set (${HDF5_PACKAGE_NAME}_LIB_TYPE)
set (${HDF5_PACKAGE_NAME}_FIND_COMPONENTS C HL static)
set (${HDF5_PACKAGE_NAME}_FIND_REQUIRED_static_C true)
+ else ()
+ set (${HDF5_PACKAGE_NAME}_LIB_TYPE)
+ set (${HDF5_PACKAGE_NAME}_FIND_COMPONENTS C HL shared)
+ set (${HDF5_PACKAGE_NAME}_FIND_REQUIRED_shared_C true)
+ endif ()
endif ()
# Handle requested components:
list (REMOVE_DUPLICATES ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
foreach (comp IN LISTS ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
- if (${comp} STREQUAL "shared")
+ if (comp STREQUAL "shared")
list (REMOVE_ITEM ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS ${comp})
set (${HDF5_PACKAGE_NAME}_LIB_TYPE ${${HDF5_PACKAGE_NAME}_LIB_TYPE} ${comp})
if (${HDF5_PACKAGE_NAME}_BUILD_FORTRAN)
set (${HDF5_PACKAGE_NAME}_INCLUDE_DIR_FORTRAN "@PACKAGE_INCLUDE_INSTALL_DIR@/shared")
endif ()
- elseif (${comp} STREQUAL "static")
+ elseif (comp STREQUAL "static")
list (REMOVE_ITEM ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS ${comp})
set (${HDF5_PACKAGE_NAME}_LIB_TYPE ${${HDF5_PACKAGE_NAME}_LIB_TYPE} ${comp})
@@ -143,32 +153,32 @@ endforeach ()
foreach (libtype IN LISTS ${HDF5_PACKAGE_NAME}_LIB_TYPE)
foreach (comp IN LISTS ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
set (hdf5_comp2)
- if (${comp} STREQUAL "C")
+ if (comp STREQUAL "C")
set (hdf5_comp "hdf5")
- elseif (${comp} STREQUAL "CXX")
+ elseif (comp STREQUAL "CXX")
set (hdf5_comp "hdf5_cpp")
- elseif (${comp} STREQUAL "HL")
+ elseif (comp STREQUAL "HL")
set (hdf5_comp "hdf5_hl")
- elseif (${comp} STREQUAL "CXX_HL")
+ elseif (comp STREQUAL "CXX_HL")
set (hdf5_comp "hdf5_hl_cpp")
- elseif (${comp} STREQUAL "Java")
+ elseif (comp STREQUAL "Java")
set (hdf5_comp "hdf5_java")
- elseif (${comp} STREQUAL "Tools")
+ elseif (comp STREQUAL "Tools")
set (hdf5_comp "hdf5_tools")
- elseif (${comp} STREQUAL "Fortran")
+ elseif (comp STREQUAL "Fortran")
set (hdf5_comp2 "hdf5_f90cstub")
set (hdf5_comp "hdf5_fortran")
- elseif (${comp} STREQUAL "Fortran_HL")
+ elseif (comp STREQUAL "Fortran_HL")
set (hdf5_comp2 "hdf5_hl_f90cstub")
set (hdf5_comp "hdf5_hl_fortran")
endif ()
- if (${comp} STREQUAL "Java")
+ if (comp STREQUAL "Java")
list (FIND ${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES "${hdf5_comp}" HAVE_COMP)
else ()
list (FIND ${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES "${hdf5_comp}-${libtype}" HAVE_COMP)
endif ()
if (${HAVE_COMP} LESS 0)
- if (${comp} STREQUAL "Java")
+ if (comp STREQUAL "Java")
set (${HDF5_PACKAGE_NAME}_${comp}_FOUND 0)
else ()
set (${HDF5_PACKAGE_NAME}_${libtype}_${comp}_FOUND 0)
@@ -183,7 +193,7 @@ foreach (libtype IN LISTS ${HDF5_PACKAGE_NAME}_LIB_TYPE)
string(TOUPPER ${HDF5_PACKAGE_NAME}_${comp}_${libtype}_LIBRARY COMP_LIBRARY)
set (${COMP_LIBRARY} ${${COMP_LIBRARY}} @HDF5_PACKAGE@::${hdf5_comp2}-${libtype} @HDF5_PACKAGE@::${hdf5_comp}-${libtype})
endif ()
- elseif (${comp} STREQUAL "Java")
+ elseif (comp STREQUAL "Java")
set (${HDF5_PACKAGE_NAME}_${comp}_FOUND 1)
string(TOUPPER ${HDF5_PACKAGE_NAME}_${comp}_LIBRARY COMP_LIBRARY)
set (${COMP_LIBRARY} ${${COMP_LIBRARY}} hdf5::${hdf5_comp})
diff --git a/config/cmake/jrunTest.cmake b/config/cmake/jrunTest.cmake
index 23f297c..44ac15b 100644
--- a/config/cmake/jrunTest.cmake
+++ b/config/cmake/jrunTest.cmake
@@ -9,7 +9,7 @@
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
-# runTest.cmake executes a command and captures the output in a file. File is then compared
+# jrunTest.cmake executes a command and captures the output in a file. File is then compared
# against a reference file. Exit status of command can also be compared.
cmake_policy(SET CMP0007 NEW)
@@ -24,7 +24,7 @@ if (NOT TEST_LIBRARY_DIRECTORY)
message (STATUS "Require TEST_LIBRARY_DIRECTORY to be defined")
endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_OUTPUT)
message (FATAL_ERROR "Require TEST_OUTPUT to be defined")
@@ -51,6 +51,8 @@ message (STATUS "COMMAND: ${TEST_TESTER} -Xmx1024M -Dorg.slf4j.simpleLogger.defa
if (WIN32 AND NOT MINGW)
set (ENV{PATH} "$ENV{PATH}\\;${TEST_LIBRARY_DIRECTORY}")
+else ()
+ set (ENV{LD_LIBRARY_PATH} "$ENV{LD_LIBRARY_PATH}:${TEST_LIBRARY_DIRECTORY}")
endif ()
# run the test program, capture the stdout/stderr and the result var
@@ -64,6 +66,7 @@ execute_process (
RESULT_VARIABLE TEST_RESULT
OUTPUT_FILE ${TEST_OUTPUT}
ERROR_FILE ${TEST_OUTPUT}.err
+ OUTPUT_VARIABLE TEST_OUT
ERROR_VARIABLE TEST_ERROR
)
@@ -126,11 +129,22 @@ if (NOT TEST_SKIP_COMPARE)
file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
endif ()
- # now compare the output with the reference
- execute_process (
- COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
- RESULT_VARIABLE TEST_RESULT
- )
+ if (NOT TEST_SORT_COMPARE)
+ # now compare the output with the reference
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+ RESULT_VARIABLE TEST_RESULT
+ )
+ else ()
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+ list (SORT v1)
+ list (SORT v2)
+ if (NOT v1 STREQUAL v2)
+ set(TEST_RESULT 1)
+ endif ()
+ endif ()
+
if (TEST_RESULT)
set (TEST_RESULT 0)
file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
@@ -142,10 +156,10 @@ if (NOT TEST_SKIP_COMPARE)
foreach (line RANGE 0 ${_FP_LEN})
list (GET test_act ${line} str_act)
list (GET test_ref ${line} str_ref)
- if (NOT ${str_act} STREQUAL ${str_ref})
- if (NOT str_act STREQUAL "")
+ if (NOT str_act STREQUAL str_ref)
+ if (str_act)
set (TEST_RESULT 1)
- message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
endif ()
endif ()
endforeach ()
@@ -194,10 +208,10 @@ if (NOT TEST_SKIP_COMPARE)
foreach (line RANGE 0 ${_FP_LEN})
list (GET test_act ${line} str_act)
list (GET test_ref ${line} str_ref)
- if (NOT ${str_act} STREQUAL ${str_ref})
- if (NOT ${str_act} STREQUAL "")
+ if (NOT str_act STREQUAL str_ref)
+ if (str_act)
set (TEST_RESULT 1)
- message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
endif ()
endif ()
endforeach ()
@@ -245,5 +259,5 @@ if (TEST_GREP_COMPARE)
endif ()
# everything went fine...
-message ("${TEST_PROGRAM} Passed")
+message (STATUS "${TEST_PROGRAM} Passed")
diff --git a/config/cmake/libhdf5.settings.cmake.in b/config/cmake/libhdf5.settings.cmake.in
index 9a534df..9e91ac0 100644
--- a/config/cmake/libhdf5.settings.cmake.in
+++ b/config/cmake/libhdf5.settings.cmake.in
@@ -32,7 +32,7 @@ Linking Options:
Languages:
----------
- C: yes
+ C: YES
C Compiler: @CMAKE_C_COMPILER@ @CMAKE_C_COMPILER_VERSION@
CPPFLAGS: @CPPFLAGS@
H5_CPPFLAGS: @H5_CPPFLAGS@
@@ -41,7 +41,7 @@ Languages:
H5_CFLAGS: @H5_CFLAGS@
AM_CFLAGS: @AM_CFLAGS@
Shared C Library: @H5_ENABLE_SHARED_LIB@
- Static C Library: YES
+ Static C Library: @H5_ENABLE_STATIC_LIB@
Fortran: @HDF5_BUILD_FORTRAN@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Fortran Compiler: @CMAKE_Fortran_COMPILER@ @CMAKE_Fortran_COMPILER_VERSION@
@@ -49,7 +49,7 @@ Languages:
@BUILD_FORTRAN_CONDITIONAL_TRUE@ H5 Fortran Flags: @H5_FCFLAGS@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ AM Fortran Flags: @AM_FCFLAGS@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Shared Fortran Library: @H5_ENABLE_SHARED_LIB@
-@BUILD_FORTRAN_CONDITIONAL_TRUE@ Static Fortran Library: YES
+@BUILD_FORTRAN_CONDITIONAL_TRUE@ Static Fortran Library: @H5_ENABLE_STATIC_LIB@
C++: @HDF5_BUILD_CPP_LIB@
@BUILD_CXX_CONDITIONAL_TRUE@ C++ Compiler: @CMAKE_CXX_COMPILER@ @CMAKE_CXX_COMPILER_VERSION@
@@ -57,10 +57,10 @@ Languages:
@BUILD_CXX_CONDITIONAL_TRUE@ H5 C++ Flags: @H5_CXXFLAGS@
@BUILD_CXX_CONDITIONAL_TRUE@ AM C++ Flags: @AM_CXXFLAGS@
@BUILD_CXX_CONDITIONAL_TRUE@ Shared C++ Library: @H5_ENABLE_SHARED_LIB@
-@BUILD_CXX_CONDITIONAL_TRUE@ Static C++ Library: YES
+@BUILD_CXX_CONDITIONAL_TRUE@ Static C++ Library: @H5_ENABLE_STATIC_LIB@
JAVA: @HDF5_BUILD_JAVA@
-@BUILD_JAVA_CONDITIONAL_TRUE@ JAVA Compiler: @CMAKE_Java_COMPILER@ @Java_VERSION@
+@BUILD_JAVA_CONDITIONAL_TRUE@ JAVA Compiler: @CMAKE_Java_COMPILER@ @Java_VERSION@
Features:
---------
diff --git a/config/cmake/mccacheinit.cmake b/config/cmake/mccacheinit.cmake
index 577144b..c35f51f 100644
--- a/config/cmake/mccacheinit.cmake
+++ b/config/cmake/mccacheinit.cmake
@@ -23,6 +23,8 @@ set (BUILD_TESTING ON CACHE BOOL "Build HDF5 Unit Testing" FORCE)
set (HDF_PACKAGE_EXT "" CACHE STRING "Name of HDF package extension" FORCE)
+set (HDF_PACKAGE_NAMESPACE "hdf5::" CACHE STRING "Name for HDF package namespace" FORCE)
+
set (HDF5_BUILD_CPP_LIB ON CACHE BOOL "Build HDF5 C++ Library" FORCE)
set (HDF5_BUILD_EXAMPLES ON CACHE BOOL "Build HDF5 Library Examples" FORCE)
diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index 0e2afc7..e1fe85a 100644
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -257,7 +257,7 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
# On Cray XC40, configuring fails in the Fortran section when using the craype-mic-knl module.
# When the configure phase is done with the craype-haswell module and the build phase is done
# with the craype-mic-knl module, configure succeeds and tests pass on the knl compute nodes
- # for Intel, Cray, GCC and Clang compilers. If the variables aren't set or if not
+ # for Intel, Cray, GCC and Clang compilers. If the variables aren't set or if not
# cross compiling, the module switch will not occur.
if (CMAKE_CROSSCOMPILING AND COMPILENODE_HWCOMPILE_MODULE AND COMPUTENODE_HWCOMPILE_MODULE)
execute_process (COMMAND module switch ${COMPILENODE_HWCOMPILE_MODULE} ${COMPUTENODE_HWCOMPILE_MODULE})
@@ -277,11 +277,15 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
else ()
file(STRINGS ${CTEST_BINARY_DIRECTORY}/Testing/TAG TAG_CONTENTS REGEX "^2([0-9]+)[-]([0-9]+)$")
- if ("${LOCAL_BATCH_SCRIPT_COMMAND}" STREQUAL "raybsub")
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
else ()
- execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
- endif ()
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "qsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME} ctestS.out)
+ else ()
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+ endif()
+ endif ()
message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
while(result)
@@ -296,10 +300,14 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/SerialTest.xml)
file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}.log ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}_Serial.log)
unset(result CACHE)
- if ("${LOCAL_BATCH_SCRIPT_COMMAND}" STREQUAL "raybsub")
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
else ()
- execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "qsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME} ctestP.out)
+ else ()
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ endif ()
endif ()
message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
diff --git a/config/cmake/scripts/HDF5config.cmake b/config/cmake/scripts/HDF5config.cmake
index 1d8d501..44ed531 100644
--- a/config/cmake/scripts/HDF5config.cmake
+++ b/config/cmake/scripts/HDF5config.cmake
@@ -34,7 +34,7 @@ cmake_minimum_required (VERSION 3.10)
# CTEST_SOURCE_NAME - source folder
##############################################################################
-set (CTEST_SOURCE_VERSION "1.11.4")
+set (CTEST_SOURCE_VERSION "1.11.6")
set (CTEST_SOURCE_VERSEXT "")
##############################################################################
@@ -44,6 +44,8 @@ set (CTEST_SOURCE_VERSEXT "")
#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
#CTEST_SOURCE_NAME - name of source folder; HDF5-1.10.0
#MODEL - CDash group name
+#HPC - run alternate configurations for HPC machines; sbatch, bsub, raybsub, qsub
+#MPI - enable MPI;
if (DEFINED CTEST_SCRIPT_ARG)
# transform ctest script arguments of the form
# script.ctest,var1=value1,var2=value2
@@ -56,6 +58,11 @@ if (DEFINED CTEST_SCRIPT_ARG)
endforeach ()
endif ()
+#HPC - run alternate configurations for HPC machines
+if (DEFINED HPC)
+ set (BUILD_GENERATOR "Unix")
+endif ()
+
# build generator must be defined
if (NOT DEFINED BUILD_GENERATOR)
message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
@@ -93,77 +100,85 @@ endif ()
###################################################################
######### Following describes compiler ############
-if (WIN32)
- set (SITE_OS_NAME "Windows")
- set (SITE_OS_VERSION "WIN7")
- if (${BUILD_GENERATOR} STREQUAL "VS201764")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017 Win64")
- set (SITE_OS_BITS "64")
- set (SITE_COMPILER_NAME "vs2017")
- set (SITE_COMPILER_VERSION "15")
- elseif (${BUILD_GENERATOR} STREQUAL "VS2017")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017")
- set (SITE_OS_BITS "32")
- set (SITE_COMPILER_NAME "vs2017")
- set (SITE_COMPILER_VERSION "15")
- elseif (${BUILD_GENERATOR} STREQUAL "VS201564")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015 Win64")
- set (SITE_OS_BITS "64")
- set (SITE_COMPILER_NAME "vs2015")
- set (SITE_COMPILER_VERSION "14")
- elseif (${BUILD_GENERATOR} STREQUAL "VS2015")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015")
- set (SITE_OS_BITS "32")
- set (SITE_COMPILER_NAME "vs2015")
- set (SITE_COMPILER_VERSION "14")
- elseif (${BUILD_GENERATOR} STREQUAL "VS201364")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
- set (SITE_OS_BITS "64")
- set (SITE_COMPILER_NAME "vs2013")
- set (SITE_COMPILER_VERSION "12")
- elseif (${BUILD_GENERATOR} STREQUAL "VS2013")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
- set (SITE_OS_BITS "32")
- set (SITE_COMPILER_NAME "vs2013")
- set (SITE_COMPILER_VERSION "12")
- elseif (${BUILD_GENERATOR} STREQUAL "VS201264")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
- set (SITE_OS_BITS "64")
- set (SITE_COMPILER_NAME "vs2012")
- set (SITE_COMPILER_VERSION "11")
- elseif (${BUILD_GENERATOR} STREQUAL "VS2012")
- set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
- set (SITE_OS_BITS "32")
- set (SITE_COMPILER_NAME "vs2012")
- set (SITE_COMPILER_VERSION "11")
+if (NOT DEFINED HPC)
+ if (NOT DEFINED BUILD_GENERATOR)
+ message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+ endif ()
+ if (WIN32)
+ set (SITE_OS_NAME "Windows")
+ set (SITE_OS_VERSION "WIN7")
+ if (BUILD_GENERATOR STREQUAL "VS201764")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017 Win64")
+ set (SITE_OS_BITS "64")
+ set (SITE_COMPILER_NAME "vs2017")
+ set (SITE_COMPILER_VERSION "15")
+ elseif (BUILD_GENERATOR STREQUAL "VS2017")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017")
+ set (SITE_OS_BITS "32")
+ set (SITE_COMPILER_NAME "vs2017")
+ set (SITE_COMPILER_VERSION "15")
+ elseif (BUILD_GENERATOR STREQUAL "VS201564")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015 Win64")
+ set (SITE_OS_BITS "64")
+ set (SITE_COMPILER_NAME "vs2015")
+ set (SITE_COMPILER_VERSION "14")
+ elseif (BUILD_GENERATOR STREQUAL "VS2015")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015")
+ set (SITE_OS_BITS "32")
+ set (SITE_COMPILER_NAME "vs2015")
+ set (SITE_COMPILER_VERSION "14")
+ elseif (BUILD_GENERATOR STREQUAL "VS201364")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
+ set (SITE_OS_BITS "64")
+ set (SITE_COMPILER_NAME "vs2013")
+ set (SITE_COMPILER_VERSION "12")
+ elseif (BUILD_GENERATOR STREQUAL "VS2013")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
+ set (SITE_OS_BITS "32")
+ set (SITE_COMPILER_NAME "vs2013")
+ set (SITE_COMPILER_VERSION "12")
+ elseif (BUILD_GENERATOR STREQUAL "VS201264")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
+ set (SITE_OS_BITS "64")
+ set (SITE_COMPILER_NAME "vs2012")
+ set (SITE_COMPILER_VERSION "11")
+ elseif (BUILD_GENERATOR STREQUAL "VS2012")
+ set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
+ set (SITE_OS_BITS "32")
+ set (SITE_COMPILER_NAME "vs2012")
+ set (SITE_COMPILER_VERSION "11")
+ else ()
+ message (FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+ endif ()
+ ## Set the following to unique id your computer ##
+ set (CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")
else ()
- message (FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+ set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
+ ## Set the following to unique id your computer ##
+ if (APPLE)
+ set (CTEST_SITE "MAC.XXXX")
+ else ()
+ set (CTEST_SITE "LINUX.XXXX")
+ endif ()
+ if (APPLE)
+ execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
+ execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
+ set (ENV{CC} "${XCODE_CC}")
+ set (ENV{CXX} "${XCODE_CXX}")
+ set (CTEST_USE_LAUNCHERS 1)
+ set (RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare")
+ set (RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized")
+ set (RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat")
+ set (RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2")
+ set (RR_FLAGS_C "${RR_FLAGS_COMMON}")
+ set (RR_FLAGS_CXX "${RR_FLAGS_COMMON}")
+ set (ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}")
+ set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
+ endif ()
endif ()
-## Set the following to unique id your computer ##
- set (CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")
else ()
+ set (CTEST_SITE "${SITE_OS_NAME}")
set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
-## Set the following to unique id your computer ##
- if (APPLE)
- set (CTEST_SITE "MAC.XXXX")
- else ()
- set (CTEST_SITE "LINUX.XXXX")
- endif ()
- if (APPLE)
- execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
- execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
- set (ENV{CC} "${XCODE_CC}")
- set (ENV{CXX} "${XCODE_CXX}")
- set (CTEST_USE_LAUNCHERS 1)
- set (RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare")
- set (RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized")
- set (RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat")
- set (RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2")
- set (RR_FLAGS_C "${RR_FLAGS_COMMON}")
- set (RR_FLAGS_CXX "${RR_FLAGS_COMMON}")
- set (ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}")
- set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
- endif ()
endif ()
###################################################################
@@ -213,6 +228,9 @@ if (WIN32)
else ()
set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
include (${CTEST_SCRIPT_DIRECTORY}/HDF5options.cmake)
+ if (DEFINED HPC)
+ include (${CTEST_SOURCE_DIRECTORY}/config/cmake/scripts/HPC/${HPC}-HDF5options.cmake)
+ endif ()
include (${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
if (APPLE)
if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg")
diff --git a/config/cmake/scripts/HDF5options.cmake b/config/cmake/scripts/HDF5options.cmake
index 45877d7..738c6c4 100644
--- a/config/cmake/scripts/HDF5options.cmake
+++ b/config/cmake/scripts/HDF5options.cmake
@@ -27,7 +27,9 @@
#############################################################################################
#### Only build static libraries ####
#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
-#### Add PICC option on linux/mac ####
+#### Only build shared libraries ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DONLY_SHARED_LIBS:BOOL=OFF")
+#### Add PIC option on linux/mac ####
#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
#############################################################################################
@@ -69,12 +71,12 @@ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRIN
#############################################################################################
### enable parallel builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-
+if (DEFINED MPI)
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+endif()
#############################################################################################
### enable thread-safety builds
diff --git a/config/cmake/scripts/HPC/bsub-HDF5options.cmake b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
new file mode 100644
index 0000000..7473e8a
--- /dev/null
+++ b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
@@ -0,0 +1,31 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "bsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
diff --git a/config/cmake/scripts/HPC/par-HDF5options.cmake b/config/cmake/scripts/HPC/par-HDF5options.cmake
deleted file mode 100644
index c7b22b9..0000000
--- a/config/cmake/scripts/HPC/par-HDF5options.cmake
+++ /dev/null
@@ -1,126 +0,0 @@
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-#############################################################################################
-#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
-#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
-#############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-#### maximum parallel processor count for build and test ####
-set (MAX_PROC_COUNT 8)
-
-#############################################################################################
-#### alternate toolsets ####
-#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
-
-#############################################################################################
-#### Only build static libraries ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
-#### Add PICC option on linux/mac ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
-
-#############################################################################################
-#### fortran enabled ####
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
-#### fortran disabled ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-
-#############################################################################################
-#### java enabled ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
-#### java disabled ####
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-
-#############################################################################################
-### change install prefix (default use INSTALLDIR value)
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")
-
-#############################################################################################
-#### ext libraries ####
-
-### ext libs from tgz
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
-### ext libs from git
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
-### ext libs on system
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=NO")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
-
-### disable using ext zlib
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
-### disable using ext szip
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
-
-#### package examples ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.12.4-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
-
-#############################################################################################
-### enable parallel builds
-
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-
-#############################################################################################
-### enable thread-safety builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
-
-#############################################################################################
-### disable test program builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
-
-#############################################################################################
-### disable packaging
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
-### Create install package with external libraries (szip, zlib)
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
-
-
-#options to run test scripts in batch commands
-set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
-set (LOCAL_BATCH_TEST "TRUE")
-set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
-set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.sl")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=ctestS.sl")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=ctestP.sl")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
-
-
-#############################################################################################
-### use a toolchain file
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/GCC.cmake")
-
-#some additions and alternatives to cross compile on haswell for knl
-#set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
-#set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
-#set (SITE_BUILDNAME_SUFFIX "knl-intel17-SHARED"
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=knl_ctestS.sl")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=knl_ctestP.sl")
-#############################################################################################
diff --git a/config/cmake/scripts/HPC/qsub-HDF5options.cmake b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
new file mode 100644
index 0000000..34eba1b
--- /dev/null
+++ b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
@@ -0,0 +1,42 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_NAME "ctest.qsub")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctest.qsub")
+if (DEFINED KNL)
+ ### some additions and alternatives to cross compile on haswell for knl
+ set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+endif ()
+set (LOCAL_BATCH_SCRIPT_COMMAND "qsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=aprun")
+# Option to suppress writing job statistics; to avoid issues with h5diff comparisons.
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_PREFLAGS:STRING=-q")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DACCOUNT_ID:STRING=${LOCAL_BATCH_SCRIPT_ARGS}")
+
+#############################################################################################
+#############################################################################################
diff --git a/config/cmake/scripts/HPC/raybsub-HDF5options.cmake b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
new file mode 100644
index 0000000..fa1ec4a
--- /dev/null
+++ b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
@@ -0,0 +1,32 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "raybsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ray_ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ray_ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_COMMAND:STRING=${LOCAL_BATCH_SCRIPT_COMMAND}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=mpirun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-np")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
diff --git a/config/cmake/scripts/HPC/sbatch-HDF5options.cmake b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
new file mode 100644
index 0000000..3205a1c
--- /dev/null
+++ b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
@@ -0,0 +1,43 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+if (DEFINED KNL)
+ ### some additions and alternatives to cross compile on haswell for knl
+ set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
+ set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+ set (LOCAL_BATCH_SCRIPT_NAME "knl_ctestS.sl")
+ set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "knl_ctestP.sl")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+else ()
+ set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
+ set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.sl")
+endif ()
+set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
+set (LOCAL_BATCH_TEST "TRUE")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+
+#############################################################################################
+#############################################################################################
diff --git a/config/cmake/scripts/HPC/ser-HDF5options.cmake b/config/cmake/scripts/HPC/ser-HDF5options.cmake
deleted file mode 100644
index 7f2e96f..0000000
--- a/config/cmake/scripts/HPC/ser-HDF5options.cmake
+++ /dev/null
@@ -1,119 +0,0 @@
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-#############################################################################################
-#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
-#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
-#############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-#### maximum parallel processor count for build and test ####
-#set (MAX_PROC_COUNT 8)
-
-#############################################################################################
-#### alternate toolsets ####
-#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
-
-#############################################################################################
-#### Only build static libraries ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
-#### Add PICC option on linux/mac ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
-
-#############################################################################################
-#### fortran enabled ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
-#### fortran disabled ####
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-
-#############################################################################################
-#### java enabled ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
-#### java disabled ####
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-
-#############################################################################################
-### change install prefix (default use INSTALLDIR value)
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")
-
-#############################################################################################
-#### ext libraries ####
-
-### ext libs from tgz
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
-### ext libs from git
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
-### ext libs on system
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=NO")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
-
-### disable using ext zlib
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
-### disable using ext szip
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
-
-#### package examples ####
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.12.4-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
-
-#############################################################################################
-### enable parallel builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-
-#############################################################################################
-### enable thread-safety builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
-
-#############################################################################################
-### disable test program builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
-
-#############################################################################################
-### disable packaging
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
-### Create install package with external libraries (szip, zlib)
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
-
-#options to run test scripts in batch commands
-set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
-set (LOCAL_BATCH_TEST "TRUE")
-set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=ctestS.sl")
-
-#############################################################################################
-### use a toolchain file
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/GCC.cmake")
-
-#some additions and alternatives to cross compile on haswell for knl
-#set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
-#set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
-#set (SITE_BUILDNAME_SUFFIX "knl-intel17-SHARED"
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=knl_ctestS.sl")
-
-#############################################################################################
diff --git a/config/cmake/userblockTest.cmake b/config/cmake/userblockTest.cmake
index 9af7e5b..0e9d01b 100644
--- a/config/cmake/userblockTest.cmake
+++ b/config/cmake/userblockTest.cmake
@@ -20,7 +20,7 @@ if (NOT TEST_GET_PROGRAM)
message (FATAL_ERROR "Require TEST_GET_PROGRAM getub to be defined")
endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_HFILE)
message (FATAL_ERROR "Require TEST_HFILE the hdf file to be defined")
@@ -62,7 +62,7 @@ if (TEST_CHECKUB STREQUAL "YES")
OUTPUT_VARIABLE TEST_OUT
ERROR_VARIABLE TEST_ERROR
)
- if (NOT ${TEST_RESULT} STREQUAL "0")
+ if (TEST_RESULT)
message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} ${TEST_OFILE} is: ${TEST_ERROR}")
endif ()
file (READ ${TEST_HFILE}.len.txt TEST_O_STRING_LEN)
@@ -70,7 +70,7 @@ if (TEST_CHECKUB STREQUAL "YES")
math( EXPR TEST_STRING_SIZE "${TEST_U_STRING_LEN} + ${TEST_O_STRING_LEN}" )
- if (NOT TEST_O_STRING_LEN STREQUAL "0")
+ if (TEST_O_STRING_LEN)
#$JAM_BIN/getub -c $s2 $origfile > $cmpfile
EXECUTE_PROCESS (
COMMAND ${TEST_GET_PROGRAM} -c ${TEST_O_STRING_LEN} ${TEST_OFILE}
@@ -108,7 +108,7 @@ if (TEST_CHECKUB STREQUAL "YES")
message (STATUS "COMPARE Result: ${TEST_RESULT}: ${TEST_STRING_SIZE}=${TEST_U_STRING_LEN}+${TEST_O_STRING_LEN}")
# if the return value is !=${TEST_EXPECT} bail out
- if (NOT ${TEST_RESULT} STREQUAL ${TEST_EXPECT})
+ if (NOT TEST_RESULT EQUAL TEST_EXPECT)
message (FATAL_ERROR "Failed: The output of ${TEST_HFILE}-ub did not match ${TEST_HFILE}.\n${TEST_ERROR}")
endif ()
else ()
@@ -121,11 +121,11 @@ else ()
OUTPUT_VARIABLE TEST_OUT
ERROR_VARIABLE TEST_ERROR
)
- if (NOT TEST_H_STRING_LEN STREQUAL "0")
+ if (TEST_H_STRING_LEN)
message (FATAL_ERROR "Failed: The output of ${TEST_HFILE} was NOT empty")
endif ()
endif ()
# everything went fine...
-message ("Passed: The output of CHECK matched expectation")
+message (STATUS "Passed: The output of CHECK matched expectation")
diff --git a/config/cmake/vfdTest.cmake b/config/cmake/vfdTest.cmake
index b616958..8e186e9 100644
--- a/config/cmake/vfdTest.cmake
+++ b/config/cmake/vfdTest.cmake
@@ -17,7 +17,7 @@ if (NOT TEST_PROGRAM)
message (FATAL_ERROR "Require TEST_PROGRAM to be defined")
endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_VFD)
message (FATAL_ERROR "Require TEST_VFD to be defined")
@@ -73,4 +73,4 @@ endif ()
message (STATUS "COMMAND Error: ${TEST_ERROR}")
# everything went fine...
-message ("Passed: The ${TEST_PROGRAM} program used vfd ${TEST_VFD}")
+message (STATUS "Passed: The ${TEST_PROGRAM} program used vfd ${TEST_VFD}")
diff --git a/config/cmake/volTest.cmake b/config/cmake/volTest.cmake
index d8c82a4..a9dd756 100644
--- a/config/cmake/volTest.cmake
+++ b/config/cmake/volTest.cmake
@@ -17,7 +17,7 @@ if (NOT TEST_PROGRAM)
message (FATAL_ERROR "Require TEST_PROGRAM to be defined")
endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_VOL)
message (FATAL_ERROR "Require TEST_VOL to be defined")
@@ -73,4 +73,4 @@ endif ()
message (STATUS "COMMAND Error: ${TEST_ERROR}")
# everything went fine...
-message ("Passed: The ${TEST_PROGRAM} program used vol ${TEST_VOL}")
+message (STATUS "Passed: The ${TEST_PROGRAM} program used vol ${TEST_VOL}")
diff --git a/config/cmake_ext_mod/ConfigureChecks.cmake b/config/cmake_ext_mod/ConfigureChecks.cmake
index 986280f..63d9ee9 100644
--- a/config/cmake_ext_mod/ConfigureChecks.cmake
+++ b/config/cmake_ext_mod/ConfigureChecks.cmake
@@ -28,7 +28,7 @@ if (APPLE)
list (LENGTH CMAKE_OSX_ARCHITECTURES ARCH_LENGTH)
if (ARCH_LENGTH GREATER 1)
set (CMAKE_OSX_ARCHITECTURES "" CACHE STRING "" FORCE)
- message(FATAL_ERROR "Building Universal Binaries on OS X is NOT supported by the HDF5 project. This is"
+ message (FATAL_ERROR "Building Universal Binaries on OS X is NOT supported by the HDF5 project. This is"
"due to technical reasons. The best approach would be build each architecture in separate directories"
"and use the 'lipo' tool to combine them into a single executable or library. The 'CMAKE_OSX_ARCHITECTURES'"
"variable has been set to a blank value which will build the default architecture for this system.")
@@ -229,7 +229,7 @@ macro (HDF_FUNCTION_TEST OTHER_TEST)
endif ()
#message (STATUS "Performing ${OTHER_TEST}")
- TRY_COMPILE (${OTHER_TEST}
+ try_compile (${OTHER_TEST}
${CMAKE_BINARY_DIR}
${HDF_RESOURCES_EXT_DIR}/HDFTests.c
COMPILE_DEFINITIONS "${MACRO_CHECK_FUNCTION_DEFINITIONS}"
@@ -274,12 +274,10 @@ if (NOT WINDOWS)
# functionality so clock_gettime and CLOCK_MONOTONIC are defined
# correctly. This was later updated to 200112L so that
# posix_memalign() is visible for the direct VFD code on Linux
- # systems. Even later, this was changed to 200809L to support
- # pread/pwrite in VFDs.
- #
+ # systems.
# POSIX feature information can be found in the gcc manual at:
# http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.html
- set (HDF_EXTRA_C_FLAGS -D_POSIX_C_SOURCE=200809L)
+ set (HDF_EXTRA_C_FLAGS -D_POSIX_C_SOURCE=200112L)
# Need to add this so that O_DIRECT is visible for the direct
# VFD on Linux systems.
@@ -288,7 +286,7 @@ if (NOT WINDOWS)
option (HDF_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON)
if (HDF_ENABLE_LARGE_FILE AND NOT DEFINED TEST_LFS_WORKS_RUN)
set (msg "Performing TEST_LFS_WORKS")
- TRY_RUN (TEST_LFS_WORKS_RUN TEST_LFS_WORKS_COMPILE
+ try_run (TEST_LFS_WORKS_RUN TEST_LFS_WORKS_COMPILE
${CMAKE_BINARY_DIR}
${HDF_RESOURCES_EXT_DIR}/HDFTests.c
COMPILE_DEFINITIONS "-DTEST_LFS_WORKS"
@@ -445,7 +443,7 @@ if (NOT WINDOWS)
# Check a bunch of time functions
#-----------------------------------------------------------------------------
CHECK_FUNCTION_EXISTS (gettimeofday ${HDF_PREFIX}_HAVE_GETTIMEOFDAY)
- foreach (test
+ foreach (time_test
HAVE_TM_GMTOFF
HAVE___TM_GMTOFF
# HAVE_TIMEZONE
@@ -455,7 +453,7 @@ if (NOT WINDOWS)
HAVE_TM_ZONE
HAVE_STRUCT_TM_TM_ZONE
)
- HDF_FUNCTION_TEST (${test})
+ HDF_FUNCTION_TEST (${time_test})
endforeach ()
if (NOT CYGWIN AND NOT MINGW)
HDF_FUNCTION_TEST (HAVE_TIMEZONE)
@@ -559,7 +557,7 @@ endif ()
# Check a bunch of other functions
#-----------------------------------------------------------------------------
if (NOT WINDOWS)
- foreach (test
+ foreach (other_test
HAVE_ATTRIBUTE
HAVE_C99_FUNC
# STDC_HEADERS
@@ -568,7 +566,7 @@ if (NOT WINDOWS)
SYSTEM_SCOPE_THREADS
HAVE_SOCKLEN_T
)
- HDF_FUNCTION_TEST (${test})
+ HDF_FUNCTION_TEST (${other_test})
endforeach ()
endif ()
@@ -658,7 +656,7 @@ if (NOT ${HDF_PREFIX}_PRINTF_LL_WIDTH OR ${HDF_PREFIX}_PRINTF_LL_WIDTH MATCHES "
set (${HDF_PREFIX}_PRINTF_LL_WIDTH "\"${${HDF_PREFIX}_PRINTF_LL}\"" CACHE INTERNAL "Width for printf for type `long long' or `__int64', us. `ll")
set (PRINT_LL_FOUND 1)
else ()
- message ("Width test failed with result: ${${HDF_PREFIX}_PRINTF_LL_TEST_RUN}")
+ message (STATUS "Width test failed with result: ${${HDF_PREFIX}_PRINTF_LL_TEST_RUN}")
endif ()
else ()
file (APPEND ${CMAKE_BINARY_DIR}/CMakeFiles/CMakeError.log
diff --git a/config/cmake_ext_mod/FindSZIP.cmake b/config/cmake_ext_mod/FindSZIP.cmake
index 699be85..152f8ac 100644
--- a/config/cmake_ext_mod/FindSZIP.cmake
+++ b/config/cmake_ext_mod/FindSZIP.cmake
@@ -9,136 +9,108 @@
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
+#########################################################################
+
+# - Derived from the FindTiff.cmake and FindJPEG.cmake that is included with cmake
+# FindSZIP
-# - Find SZIP library
-# - Derived from the FindTiff.cmake that is included with cmake
# Find the native SZIP includes and library
-# This module defines
-# SZIP_INCLUDE_DIRS, where to find tiff.h, etc.
-# SZIP_LIBRARIES, libraries to link against to use SZIP.
-# SZIP_FOUND, If false, do not try to use SZIP.
-# also defined, but not for general use are
-# SZIP_LIBRARY, where to find the SZIP library.
-# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
-# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
-# message (STATUS "Finding SZIP library and headers..." )
+# Imported targets
+##################
-############################################
+# This module defines the following :prop_tgt:`IMPORTED` targets:
#
-# Check the existence of the libraries.
+# SZIP::SZIP
+# The SZIP library, if found.
#
-############################################
-# This macro was taken directly from the FindQt4.cmake file that is included
-# with the CMake distribution. This is NOT my work. All work was done by the
-# original authors of the FindQt4.cmake file. Only minor modifications were
-# made to remove references to Qt and make this file more generally applicable
-#########################################################################
+# Result variables
+###################
-macro (SZIP_ADJUST_LIB_VARS basename)
- if (${basename}_INCLUDE_DIR)
+# This module will set the following variables in your project:
- # if only the release version was found, set the debug variable also to the release version
- if (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
- set (${basename}_LIBRARY_DEBUG ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_RELEASE})
- endif ()
+# SZIP_FOUND, true if the SZIP headers and libraries were found.
+# SZIP_INCLUDE_DIR, the directory containing the SZIP headers.
+# SZIP_INCLUDE_DIRS, the directory containing the SZIP headers.
+# SZIP_LIBRARIES, libraries to link against to use SZIP.
- # if only the debug version was found, set the release variable also to the debug version
- if (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
- set (${basename}_LIBRARY_RELEASE ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_DEBUG})
- endif ()
- if (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
- # if the generator supports configuration types then set
- # optimized and debug libraries, or if the CMAKE_BUILD_TYPE has a value
- if (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
- set (${basename}_LIBRARY optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- else ()
- # if there are no configuration types and CMAKE_BUILD_TYPE has no value
- # then just use the release libraries
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE} )
- endif ()
- set (${basename}_LIBRARIES optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- endif ()
+# Cache variables
+#################
- set (${basename}_LIBRARY ${${basename}_LIBRARY} CACHE FILEPATH "The ${basename} library")
+# The following variables may also be set:
- if (${basename}_LIBRARY)
- set (${basename}_FOUND 1)
- endif ()
- endif ()
+# SZIP_LIBRARY, where to find the SZIP library.
+# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
+# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
- # Make variables changeble to the advanced user
- MARK_AS_ADVANCED (${basename}_LIBRARY ${basename}_LIBRARY_RELEASE ${basename}_LIBRARY_DEBUG ${basename}_INCLUDE_DIR )
-endmacro ()
-
-
-# Look for the header file.
-set (SZIP_INCLUDE_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/include
- $ENV{SZIP_INSTALL}/include/szip
- /usr/include
- /usr/include/szip
-)
-
-set (SZIP_LIB_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/lib
- /usr/lib
-)
-
-set (SZIP_BIN_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/bin
- /usr/bin
-)
-
-FIND_PATH (SZIP_INCLUDE_DIR
- NAMES szlib.h
- PATHS ${SZIP_INCLUDE_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-if (WIN32)
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d;libsz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;libsz;libszip")
-else ()
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;szip")
-endif ()
+# message (STATUS "Finding SZIP library and headers..." )
+#########################################################################
-# Look for the library.
-FIND_LIBRARY (SZIP_LIBRARY_DEBUG
- NAMES ${SZIP_SEARCH_DEBUG_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-FIND_LIBRARY (SZIP_LIBRARY_RELEASE
- NAMES ${SZIP_SEARCH_RELEASE_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-SZIP_ADJUST_LIB_VARS (SZIP)
-
-if (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
- set (SZIP_FOUND 1)
- set (SZIP_LIBRARIES ${SZIP_LIBRARY})
- set (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR})
- if (SZIP_LIBRARY_DEBUG)
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_DEBUG} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- elseif ()
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_RELEASE} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- endif ()
-else ()
- set (SZIP_FOUND 0)
- set (SZIP_LIBRARIES)
- set (SZIP_INCLUDE_DIRS)
-endif ()
+
+find_path(SZIP_INCLUDE_DIR szlib.h)
+
+set(szip_names ${SZIP_NAMES} sz szip szip-static libsz libszip libszip-static)
+foreach(name ${szip_names})
+ list(APPEND szip_names_debug "${name}d")
+endforeach()
+
+if(NOT SZIP_LIBRARY)
+ find_library(SZIP_LIBRARY_RELEASE NAMES ${szip_names})
+ find_library(SZIP_LIBRARY_DEBUG NAMES ${szip_names_debug})
+ include(${CMAKE_CURRENT_LIST_DIR}/SelectLibraryConfigurations.cmake)
+ select_library_configurations(SZIP)
+ mark_as_advanced(SZIP_LIBRARY_RELEASE SZIP_LIBRARY_DEBUG)
+endif()
+unset(szip_names)
+unset(szip_names_debug)
+
+if(SZIP_INCLUDE_DIR AND EXISTS "${SZIP_INCLUDE_DIR}/SZconfig.h")
+ file(STRINGS "${SZIP_INCLUDE_DIR}/SZconfig.h" szip_version_str
+ REGEX "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+.*")
+
+ string(REGEX REPLACE "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+([0-9]+).*"
+ "\\1" SZIP_VERSION "${szip_version_str}")
+ unset(szip_version_str)
+endif()
+
+include(${CMAKE_CURRENT_LIST_DIR}/FindPackageHandleStandardArgs.cmake)
+find_package_handle_standard_args(SZIP
+ REQUIRED_VARS SZIP_LIBRARY SZIP_INCLUDE_DIR
+ VERSION_VAR SZIP_VERSION)
+
+if(SZIP_FOUND)
+ set(SZIP_LIBRARIES ${SZIP_LIBRARY})
+ set(SZIP_INCLUDE_DIRS "${SZIP_INCLUDE_DIR}")
+
+ if(NOT TARGET SZIP::SZIP)
+ add_library(SZIP::SZIP UNKNOWN IMPORTED)
+ if(SZIP_INCLUDE_DIRS)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ INTERFACE_INCLUDE_DIRECTORIES "${SZIP_INCLUDE_DIRS}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY}")
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES "C"
+ IMPORTED_LOCATION "${SZIP_LIBRARY}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_RELEASE}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS RELEASE)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_RELEASE "C"
+ IMPORTED_LOCATION_RELEASE "${SZIP_LIBRARY_RELEASE}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_DEBUG}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS DEBUG)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_DEBUG "C"
+ IMPORTED_LOCATION_DEBUG "${SZIP_LIBRARY_DEBUG}")
+ endif()
+ endif()
+endif()
+
+mark_as_advanced(SZIP_LIBRARY SZIP_INCLUDE_DIR)
# Report the results.
if (NOT SZIP_FOUND)
@@ -153,29 +125,3 @@ if (NOT SZIP_FOUND)
endif ()
endif ()
endif ()
-
-if (SZIP_FOUND)
- include (CheckSymbolExists)
- #############################################
- # Find out if SZIP was build using dll's
- #############################################
- # Save required variable
- set (CMAKE_REQUIRED_INCLUDES_SAVE ${CMAKE_REQUIRED_INCLUDES})
- set (CMAKE_REQUIRED_FLAGS_SAVE ${CMAKE_REQUIRED_FLAGS})
- # Add SZIP_INCLUDE_DIR to CMAKE_REQUIRED_INCLUDES
- set (CMAKE_REQUIRED_INCLUDES "${CMAKE_REQUIRED_INCLUDES};${SZIP_INCLUDE_DIRS}")
-
- # Restore CMAKE_REQUIRED_INCLUDES and CMAKE_REQUIRED_FLAGS variables
- set (CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES_SAVE})
- set (CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS_SAVE})
- #
- #############################################
-endif ()
-
-if (FIND_SZIP_DEBUG)
- message (STATUS "SZIP_INCLUDE_DIR: ${SZIP_INCLUDE_DIR}")
- message (STATUS "SZIP_INCLUDE_DIRS: ${SZIP_INCLUDE_DIRS}")
- message (STATUS "SZIP_LIBRARY_DEBUG: ${SZIP_LIBRARY_DEBUG}")
- message (STATUS "SZIP_LIBRARY_RELEASE: ${SZIP_LIBRARY_RELEASE}")
- message (STATUS "CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
-endif ()
diff --git a/config/cmake_ext_mod/HDFLibMacros.cmake b/config/cmake_ext_mod/HDFLibMacros.cmake
index 2eda66c..9df2b4b 100644
--- a/config/cmake_ext_mod/HDFLibMacros.cmake
+++ b/config/cmake_ext_mod/HDFLibMacros.cmake
@@ -14,25 +14,7 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
# May need to build JPEG with PIC on x64 machines with gcc
# Need to use CMAKE_ANSI_CFLAGS define so that compiler test works
- if (${compress_type} MATCHES "SVN")
- EXTERNALPROJECT_ADD (JPEG
- SVN_REPOSITORY ${JPEG_URL}
- # [SVN_REVISION rev]
- INSTALL_COMMAND ""
- CMAKE_ARGS
- -DBUILD_SHARED_LIBS:BOOL=${BUILD_SHARED_LIBS}
- -DJPEG_PACKAGE_EXT:STRING=${HDF_PACKAGE_EXT}
- -DJPEG_EXTERNALLY_CONFIGURED:BOOL=OFF
- -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
- -DCMAKE_INSTALL_PREFIX:PATH=${CMAKE_INSTALL_PREFIX}
- -DCMAKE_RUNTIME_OUTPUT_DIRECTORY:PATH=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}
- -DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
- -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
- -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
- -DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
- -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
- )
- elseif (${compress_type} MATCHES "GIT")
+ if (${compress_type} MATCHES "GIT")
EXTERNALPROJECT_ADD (JPEG
GIT_REPOSITORY ${JPEG_URL}
GIT_TAG ${JPEG_BRANCH}
@@ -49,6 +31,7 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
-DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
-DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
elseif (${compress_type} MATCHES "TGZ")
EXTERNALPROJECT_ADD (JPEG
@@ -67,23 +50,24 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
-DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
-DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
endif ()
externalproject_get_property (JPEG BINARY_DIR SOURCE_DIR)
##include (${BINARY_DIR}/${JPEG_PACKAGE_NAME}${HDF_PACKAGE_EXT}-targets.cmake)
# Create imported target jpeg-static
- add_library(jpeg-static STATIC IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (jpeg-static "jpeg" STATIC "")
- add_dependencies (jpeg-static JPEG)
- set (JPEG_STATIC_LIBRARY "jpeg-static")
+ add_library(${HDF_PACKAGE_NAMESPACE}jpeg-static STATIC IMPORTED)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}jpeg-static "jpeg" STATIC "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}jpeg-static JPEG)
+ set (JPEG_STATIC_LIBRARY "${HDF_PACKAGE_NAMESPACE}jpeg-static")
set (JPEG_LIBRARIES ${JPEG_STATIC_LIBRARY})
if (BUILD_SHARED_LIBS)
# Create imported target jpeg-shared
- add_library(jpeg-shared SHARED IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (jpeg-shared "jpeg" SHARED "")
- add_dependencies (jpeg-shared JPEG)
- set (JPEG_SHARED_LIBRARY "jpeg-shared")
+ add_library(${HDF_PACKAGE_NAMESPACE}jpeg-shared SHARED IMPORTED)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}jpeg-shared "jpeg" SHARED "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}jpeg-shared JPEG)
+ set (JPEG_SHARED_LIBRARY "${HDF_PACKAGE_NAMESPACE}jpeg-shared")
set (JPEG_LIBRARIES ${JPEG_LIBRARIES} ${JPEG_SHARED_LIBRARY})
endif ()
@@ -100,33 +84,14 @@ macro (PACKAGE_JPEG_LIBRARY compress_type)
COMMENT "Copying ${JPEG_INCLUDE_DIR_GEN}/jconfig.h to ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/"
)
set (EXTERNAL_HEADER_LIST ${EXTERNAL_HEADER_LIST} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/jconfig.h)
- if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "SVN" OR ${compress_type} MATCHES "TGZ")
+ if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "TGZ")
add_dependencies (JPEG-GenHeader-Copy JPEG)
endif ()
endmacro ()
#-------------------------------------------------------------------------------
macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
- if (${compress_type} MATCHES "SVN")
- EXTERNALPROJECT_ADD (SZIP
- SVN_REPOSITORY ${SZIP_URL}
- # [SVN_REVISION rev]
- INSTALL_COMMAND ""
- CMAKE_ARGS
- -DBUILD_SHARED_LIBS:BOOL=${BUILD_SHARED_LIBS}
- -DSZIP_PACKAGE_EXT:STRING=${HDF_PACKAGE_EXT}
- -DSZIP_EXTERNALLY_CONFIGURED:BOOL=OFF
- -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
- -DCMAKE_INSTALL_PREFIX:PATH=${CMAKE_INSTALL_PREFIX}
- -DCMAKE_RUNTIME_OUTPUT_DIRECTORY:PATH=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}
- -DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
- -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
- -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
- -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
- -DSZIP_ENABLE_ENCODING:BOOL=${encoding}
- -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
- )
- elseif (${compress_type} MATCHES "GIT")
+ if (${compress_type} MATCHES "GIT")
EXTERNALPROJECT_ADD (SZIP
GIT_REPOSITORY ${SZIP_URL}
GIT_TAG ${SZIP_BRANCH}
@@ -144,6 +109,7 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
-DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
-DSZIP_ENABLE_ENCODING:BOOL=${encoding}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
elseif (${compress_type} MATCHES "TGZ")
EXTERNALPROJECT_ADD (SZIP
@@ -163,23 +129,24 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
-DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
-DSZIP_ENABLE_ENCODING:BOOL=${encoding}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
endif ()
externalproject_get_property (SZIP BINARY_DIR SOURCE_DIR)
##include (${BINARY_DIR}/${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT}-targets.cmake)
# Create imported target szip-static
- add_library(szip-static STATIC IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (szip-static "szip" STATIC "")
- add_dependencies (szip-static SZIP)
- set (SZIP_STATIC_LIBRARY "szip-static")
+ add_library(${HDF_PACKAGE_NAMESPACE}szip-static STATIC IMPORTED)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}szip-static "szip" STATIC "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}szip-static SZIP)
+ set (SZIP_STATIC_LIBRARY "${HDF_PACKAGE_NAMESPACE}szip-static")
set (SZIP_LIBRARIES ${SZIP_STATIC_LIBRARY})
if (BUILD_SHARED_LIBS)
# Create imported target szip-shared
- add_library(szip-shared SHARED IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (szip-shared "szip" SHARED "")
- add_dependencies (szip-shared SZIP)
- set (SZIP_SHARED_LIBRARY "szip-shared")
+ add_library(${HDF_PACKAGE_NAMESPACE}szip-shared SHARED IMPORTED)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}szip-shared "szip" SHARED "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}szip-shared SZIP)
+ set (SZIP_SHARED_LIBRARY "${HDF_PACKAGE_NAMESPACE}szip-shared")
set (SZIP_LIBRARIES ${SZIP_LIBRARIES} ${SZIP_SHARED_LIBRARY})
endif ()
@@ -196,32 +163,14 @@ macro (PACKAGE_SZIP_LIBRARY compress_type)
COMMENT "Copying ${SZIP_INCLUDE_DIR_GEN}/SZconfig.h to ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/"
)
set (EXTERNAL_HEADER_LIST ${EXTERNAL_HEADER_LIST} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/SZconfig.h)
- if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "SVN" OR ${compress_type} MATCHES "TGZ")
+ if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "TGZ")
add_dependencies (SZIP-GenHeader-Copy SZIP)
endif ()
endmacro ()
#-------------------------------------------------------------------------------
macro (EXTERNAL_ZLIB_LIBRARY compress_type)
- if (${compress_type} MATCHES "SVN")
- EXTERNALPROJECT_ADD (ZLIB
- SVN_REPOSITORY ${ZLIB_URL}
- # [SVN_REVISION rev]
- INSTALL_COMMAND ""
- CMAKE_ARGS
- -DBUILD_SHARED_LIBS:BOOL=${BUILD_SHARED_LIBS}
- -DZLIB_PACKAGE_EXT:STRING=${HDF_PACKAGE_EXT}
- -DZLIB_EXTERNALLY_CONFIGURED:BOOL=OFF
- -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
- -DCMAKE_INSTALL_PREFIX:PATH=${CMAKE_INSTALL_PREFIX}
- -DCMAKE_RUNTIME_OUTPUT_DIRECTORY:PATH=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}
- -DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
- -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
- -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
- -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
- -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
- )
- elseif (${compress_type} MATCHES "GIT")
+ if (${compress_type} MATCHES "GIT")
EXTERNALPROJECT_ADD (ZLIB
GIT_REPOSITORY ${ZLIB_URL}
GIT_TAG ${ZLIB_BRANCH}
@@ -238,6 +187,7 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
-DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
-DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
elseif (${compress_type} MATCHES "TGZ")
EXTERNALPROJECT_ADD (ZLIB
@@ -256,6 +206,7 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
-DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
-DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
-DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
+ -DPACKAGE_NAMESPACE=${HDF_PACKAGE_NAMESPACE}
)
endif ()
externalproject_get_property (ZLIB BINARY_DIR SOURCE_DIR)
@@ -267,17 +218,18 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
endif ()
##include (${BINARY_DIR}/${ZLIB_PACKAGE_NAME}${HDF_PACKAGE_EXT}-targets.cmake)
# Create imported target zlib-static
- add_library(zlib-static STATIC IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (zlib-static ${ZLIB_LIB_NAME} STATIC "")
- add_dependencies (zlib-static ZLIB)
- set (ZLIB_STATIC_LIBRARY "zlib-static")
+ add_library(${HDF_PACKAGE_NAMESPACE}zlib-static STATIC IMPORTED)
+# add_library(${HDF_PACKAGE_NAMESPACE}zlib-static ALIAS zlib-static)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}zlib-static ${ZLIB_LIB_NAME} STATIC "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}zlib-static ZLIB)
+ set (ZLIB_STATIC_LIBRARY "${HDF_PACKAGE_NAMESPACE}zlib-static")
set (ZLIB_LIBRARIES ${ZLIB_STATIC_LIBRARY})
if (BUILD_SHARED_LIBS)
# Create imported target zlib-shared
- add_library(zlib-shared SHARED IMPORTED)
- HDF_IMPORT_SET_LIB_OPTIONS (zlib-shared ${ZLIB_LIB_NAME} SHARED "")
- add_dependencies (zlib-shared ZLIB)
- set (ZLIB_SHARED_LIBRARY "zlib-shared")
+ add_library(${HDF_PACKAGE_NAMESPACE}zlib-shared SHARED IMPORTED)
+ HDF_IMPORT_SET_LIB_OPTIONS (${HDF_PACKAGE_NAMESPACE}zlib-shared ${ZLIB_LIB_NAME} SHARED "")
+ add_dependencies (${HDF_PACKAGE_NAMESPACE}zlib-shared ZLIB)
+ set (ZLIB_SHARED_LIBRARY "${HDF_PACKAGE_NAMESPACE}zlib-shared")
set (ZLIB_LIBRARIES ${ZLIB_LIBRARIES} ${ZLIB_SHARED_LIBRARY})
endif ()
@@ -294,7 +246,7 @@ macro (PACKAGE_ZLIB_LIBRARY compress_type)
COMMENT "Copying ${ZLIB_INCLUDE_DIR_GEN}/zconf.h to ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/"
)
set (EXTERNAL_HEADER_LIST ${EXTERNAL_HEADER_LIST} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/zconf.h)
- if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "SVN" OR ${compress_type} MATCHES "TGZ")
+ if (${compress_type} MATCHES "GIT" OR ${compress_type} MATCHES "TGZ")
add_dependencies (ZLIB-GenHeader-Copy ZLIB)
endif ()
endmacro ()
diff --git a/config/cmake_ext_mod/HDFMacros.cmake b/config/cmake_ext_mod/HDFMacros.cmake
index 2f4ce52..9da5006 100644
--- a/config/cmake_ext_mod/HDFMacros.cmake
+++ b/config/cmake_ext_mod/HDFMacros.cmake
@@ -28,7 +28,7 @@ macro (SET_HDF_BUILD_TYPE)
endif()
endif()
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
- message(STATUS "Setting build type to 'RelWithDebInfo' as none was specified.")
+ message (STATUS "Setting build type to 'RelWithDebInfo' as none was specified.")
set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Choose the type of build." FORCE)
# Set the possible values of build type for cmake-gui
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release"
@@ -224,10 +224,9 @@ macro (TARGET_C_PROPERTIES wintarget libtype)
$<$<C_COMPILER_ID:MSVC>:${WIN_COMPILE_FLAGS}>
$<$<CXX_COMPILER_ID:MSVC>:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries(${wintarget} INTERFACE
- $<$<C_COMPILER_ID:MSVC>:${WIN_LINK_FLAGS}>
- $<$<CXX_COMPILER_ID:MSVC>:${WIN_LINK_FLAGS}>
- )
+ if(MSVC)
+ set_property(TARGET ${wintarget} APPEND PROPERTY LINK_FLAGS "${WIN_LINK_FLAGS}")
+ endif()
endmacro ()
#-----------------------------------------------------------------------------
@@ -294,7 +293,9 @@ macro (HDF_README_PROPERTIES target_fortran)
set (BINARY_PLATFORM "${BINARY_PLATFORM} / ${CMAKE_Fortran_COMPILER_ID} Fortran")
endif ()
- if (BUILD_SHARED_LIBS)
+ if (ONLY_SHARED_LIBS)
+ set (LIB_TYPE "Shared")
+ elseif (BUILD_SHARED_LIBS)
set (LIB_TYPE "Static and Shared")
else ()
set (LIB_TYPE "Static")
diff --git a/config/cmake_ext_mod/HDFUseCXX.cmake b/config/cmake_ext_mod/HDFUseCXX.cmake
index efaa556..8d98147 100644
--- a/config/cmake_ext_mod/HDFUseCXX.cmake
+++ b/config/cmake_ext_mod/HDFUseCXX.cmake
@@ -96,7 +96,7 @@ endmacro ()
# Check a bunch of cxx functions
#-----------------------------------------------------------------------------
if (CMAKE_CXX_COMPILER_LOADED)
- foreach (test
+ foreach (cxx_test
OLD_HEADER_FILENAME
HDF_NO_NAMESPACE
HDF_NO_STD
@@ -104,6 +104,6 @@ if (CMAKE_CXX_COMPILER_LOADED)
NO_STATIC_CAST
CXX_HAVE_OFFSETOF
)
- HDF_CXX_FUNCTION_TEST (${test})
+ HDF_CXX_FUNCTION_TEST (${cxx_test})
endforeach ()
endif ()
diff --git a/config/cmake_ext_mod/HDFUseFortran.cmake b/config/cmake_ext_mod/HDFUseFortran.cmake
index c68c921..bed1fc1 100644
--- a/config/cmake_ext_mod/HDFUseFortran.cmake
+++ b/config/cmake_ext_mod/HDFUseFortran.cmake
@@ -13,7 +13,7 @@
# This file provides functions for Fortran support.
#
#-------------------------------------------------------------------------------
-ENABLE_LANGUAGE (Fortran)
+enable_language (Fortran)
set (HDF_PREFIX "H5")
#-------------------------------------------------------------------------------
@@ -65,9 +65,9 @@ macro (CHECK_FORTRAN_FEATURE FUNCTION CODE VARIABLE)
OUTPUT_VARIABLE OUTPUT
)
-# message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
-# message ( "Test result ${OUTPUT}")
-# message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
+# message (STATUS "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
+# message (STATUS "Test result ${OUTPUT}")
+# message (STATUS "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
if (${RESULT_VAR})
set (${VARIABLE} 1 CACHE INTERNAL "Have Fortran function ${FUNCTION}")
diff --git a/config/cmake_ext_mod/grepTest.cmake b/config/cmake_ext_mod/grepTest.cmake
index 1417204..4b58639 100644
--- a/config/cmake_ext_mod/grepTest.cmake
+++ b/config/cmake_ext_mod/grepTest.cmake
@@ -20,7 +20,7 @@ endif ()
# message (STATUS "Require TEST_ARGS to be defined")
#endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_OUTPUT)
message (FATAL_ERROR "Require TEST_OUTPUT to be defined")
@@ -29,14 +29,35 @@ endif ()
# message (STATUS "Require TEST_EXPECT to be defined")
#endif ()
if (NOT TEST_FILTER)
- message (STATUS "Require TEST_FILTER to be defined")
+ message (STATUS "Optional TEST_FILTER to be defined")
endif ()
if (NOT TEST_REFERENCE)
message (FATAL_ERROR "Require TEST_REFERENCE to be defined")
endif ()
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
+ file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT})
+endif ()
+
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+ file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+endif ()
+
message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
+if (TEST_LIBRARY_DIRECTORY)
+ if (WIN32 AND NOT MINGW)
+ set (ENV{PATH} "$ENV{PATH};${TEST_LIBRARY_DIRECTORY}")
+ else ()
+ set (ENV{LD_LIBRARY_PATH} "$ENV{LD_LIBRARY_PATH}:${TEST_LIBRARY_DIRECTORY}")
+ endif ()
+endif ()
+
+if (TEST_ENV_VAR)
+ set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
+ #message (STATUS "ENV:${TEST_ENV_VAR}=$ENV{${TEST_ENV_VAR}}")
+endif ()
+
# run the test program, capture the stdout/stderr and the result var
execute_process (
COMMAND ${TEST_PROGRAM} ${TEST_ARGS}
@@ -49,27 +70,117 @@ execute_process (
)
message (STATUS "COMMAND Result: ${TEST_RESULT}")
+
message (STATUS "COMMAND Error: ${TEST_ERROR}")
-# now grep the output with the reference
+# remove special output
file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+string (FIND TEST_STREAM "_pmi_alps" "${TEST_FIND_RESULT}")
+if (TEST_FIND_RESULT GREATER 0)
+ string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_STREAM})
+endif ()
-# TEST_REFERENCE should always be matched
-string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
-string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
-if (NOT TEST_RESULT)
- message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
+# if the TEST_ERRREF exists grep the error output with the error reference
+if (TEST_ERRREF)
+ # if the .err file exists grep the error output with the error reference before comparing stdout
+ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_ERR_STREAM)
+
+ # TEST_ERRREF should always be matched
+ string (REGEX MATCH "${TEST_ERRREF}" TEST_MATCH ${TEST_ERR_STREAM})
+ string (COMPARE EQUAL "${TEST_ERRREF}" "${TEST_MATCH}" TEST_RESULT)
+ if (NOT TEST_RESULT)
+ message (FATAL_ERROR "Failed: The error output of ${TEST_PROGRAM} did not contain ${TEST_ERRREF}")
+ endif ()
+ endif ()
+
+ #always compare output file to reference unless this must be skipped
+ if (NOT TEST_SKIP_COMPARE)
+ if (EXISTS ${TEST_FOLDER}/${TEST_REFERENCE})
+ if (WIN32 AND NOT MINGW)
+ file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+ file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
+ endif ()
+ if (NOT TEST_SORT_COMPARE)
+ # now compare the output with the reference
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+ RESULT_VARIABLE TEST_RESULT
+ )
+ else ()
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+ list (SORT v1)
+ list (SORT v2)
+ if (NOT v1 STREQUAL v2)
+ set(TEST_RESULT 1)
+ endif ()
+ endif ()
+
+ if (TEST_RESULT)
+ set (TEST_RESULT 0)
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
+ list (LENGTH test_act len_act)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
+ list (LENGTH test_ref len_ref)
+ if (len_act GREATER 0 AND len_ref GREATER 0)
+ math (EXPR _FP_LEN "${len_ref} - 1")
+ foreach (line RANGE 0 ${_FP_LEN})
+ list (GET test_act ${line} str_act)
+ list (GET test_ref ${line} str_ref)
+ if (NOT str_act STREQUAL str_ref)
+ if (str_act)
+ set (TEST_RESULT 1)
+ message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ endif ()
+ endif ()
+ endforeach ()
+ else ()
+ if (len_act EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
+ endif ()
+ if (len_ref EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
+ endif ()
+ endif ()
+ if (NOT len_act EQUAL len_ref)
+ set (TEST_RESULT 1)
+ endif ()
+ endif ()
+
+ message (STATUS "COMPARE Result: ${TEST_RESULT}")
+
+ # again, if return value is !=0 scream and shout
+ if (TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
+ endif ()
+ endif ()
+ endif ()
+else ()
+ # else grep the output with the reference
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+
+ # TEST_REFERENCE should always be matched
+ string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
+ string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
+ if (NOT TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
+ endif ()
endif ()
-string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
-if (TEST_EXPECT)
- # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match
- string (LENGTH "${TEST_MATCH}" TEST_RESULT)
- if (TEST_RESULT)
- message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
+
+if (TEST_FILTER)
+ string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
+ if (TEST_EXPECT)
+ # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match
+ string (LENGTH "${TEST_MATCH}" TEST_RESULT)
+ if (TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
+ endif ()
endif ()
endif ()
# everything went fine...
-message ("Passed: The output of ${TEST_PROGRAM} matched")
+message (STATUS "Passed: The output of ${TEST_PROGRAM} matched")
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index 48402a2..c9508f3 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -18,7 +18,7 @@ if (NOT TEST_PROGRAM)
message (FATAL_ERROR "Require TEST_PROGRAM to be defined")
endif ()
if (NOT TEST_FOLDER)
- message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+ message (FATAL_ERROR "Require TEST_FOLDER to be defined")
endif ()
if (NOT TEST_OUTPUT)
message (FATAL_ERROR "Require TEST_OUTPUT to be defined")
@@ -218,10 +218,10 @@ if (NOT TEST_SKIP_COMPARE)
foreach (line RANGE 0 ${_FP_LEN})
list (GET test_act ${line} str_act)
list (GET test_ref ${line} str_ref)
- if (NOT ${str_act} STREQUAL ${str_ref})
- if (NOT str_act STREQUAL "")
+ if (NOT str_act STREQUAL str_ref)
+ if (str_act)
set (TEST_RESULT 1)
- message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
endif ()
endif ()
endforeach ()
@@ -270,10 +270,10 @@ if (NOT TEST_SKIP_COMPARE)
foreach (line RANGE 0 ${_FP_LEN})
list (GET test_act ${line} str_act)
list (GET test_ref ${line} str_ref)
- if (NOT ${str_act} STREQUAL ${str_ref})
- if (NOT ${str_act} STREQUAL "")
+ if (NOT str_act STREQUAL str_ref)
+ if (str_act)
set (TEST_RESULT 1)
- message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
endif ()
endif ()
endforeach ()
@@ -321,5 +321,5 @@ if (TEST_GREP_COMPARE)
endif ()
# everything went fine...
-message ("${TEST_PROGRAM} Passed")
+message (STATUS "${TEST_PROGRAM} Passed")
diff --git a/config/commence.am b/config/commence.am
index 5d88a88..a16eee5 100644
--- a/config/commence.am
+++ b/config/commence.am
@@ -97,8 +97,8 @@ CHECK_CLEANFILES=*.chkexe *.chklog *.clog *.clog2
# exists.
.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
build-tests check-clean check-install check-p check-s check-vfd \
- check-vol install-doc lib progs tests uninstall-doc _exec_check-s \
- _test help
+ check-passthrough-vol install-doc lib progs tests uninstall-doc \
+ _exec_check-s _test help
help:
@$(top_srcdir)/bin/makehelp
diff --git a/config/conclude.am b/config/conclude.am
index 9da1da5..2eec03a 100644
--- a/config/conclude.am
+++ b/config/conclude.am
@@ -282,8 +282,10 @@ check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
fi; \
done
-# Run test with different Virtual Object Layer Connector
-check-vol: $(LIB) $(PROGS) $(chk_TESTS)
+# Run test with different passthrough Virtual Object Layer Connector
+# NOTE: Will only succeed with passthrough VOL connectors that use
+# the native VOL connector as the terminal connector.
+check-passthrough-vol: $(LIB) $(PROGS) $(chk_TESTS)
@for vol in $(VOL_LIST) dummy; do \
if test "$$vol" != dummy; then \
echo "============================"; \
diff --git a/config/gnu-flags b/config/gnu-flags
index 225f072..c55391d 100644
--- a/config/gnu-flags
+++ b/config/gnu-flags
@@ -1,4 +1,4 @@
-# -*- shell-script -*-
+# -*- shell-script -*-
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
@@ -37,10 +37,10 @@ if test X = "X$cc_flags_set"; then
cc_vendor=`echo $cc_version |sed 's/\([a-z]*\).*/\1/'`
cc_version=`echo $cc_version |sed 's/[-a-z]//g'`
if test X = "X$cc_vendor" -a X != "X$cc_version"; then
- cc_vendor=gcc
+ cc_vendor=gcc
fi
if test "-" != "$cc_vendor-$cc_version"; then
- echo "compiler '$CC' is GNU $cc_vendor-$cc_version"
+ echo "compiler '$CC' is GNU $cc_vendor-$cc_version"
fi
# Some version numbers
@@ -87,7 +87,7 @@ case "$cc_vendor-$cc_version" in
case "$host_os-$host_cpu" in
# cygwin needs the "-std=c99" flag removed, so make
# a specific case for Cygwin without the flag and a default
- # case to add the flag everywhere else
+ # case to add the flag everywhere else
cygwin-*)
;;
@@ -111,13 +111,13 @@ case "$cc_vendor-$cc_version" in
# know if they do start showing up.
#
# NOTE: Don't add -Wpadded here since we can't/won't fix the (many)
- # warnings that are emitted. If you need it, add it from the
+ # warnings that are emitted. If you need it, add it from the
# environment variable at configure time.
H5_CFLAGS="$H5_CFLAGS $arch -pedantic -Wall -Wextra -Wbad-function-cast -Wc++-compat -Wcast-align"
H5_CFLAGS="$H5_CFLAGS -Wcast-qual -Wconversion -Wdeclaration-after-statement -Wdisabled-optimization -Wfloat-equal"
H5_CFLAGS="$H5_CFLAGS -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-include-dirs"
H5_CFLAGS="$H5_CFLAGS -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-arith"
- H5_CFLAGS="$H5_CFLAGS -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-default -Wswitch-enum"
+ H5_CFLAGS="$H5_CFLAGS -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-enum -Wswitch-default"
H5_CFLAGS="$H5_CFLAGS -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings"
# Production
@@ -126,7 +126,7 @@ case "$cc_vendor-$cc_version" in
gcc-4.*)
PROD_CFLAGS=
;;
- gcc-[56].*)
+ gcc-[56789].*)
PROD_CFLAGS="-fstdarg-opt"
;;
*)
@@ -140,7 +140,7 @@ case "$cc_vendor-$cc_version" in
# NDEBUG is handled explicitly by the configure script
# -g is handled by the symbols flags
case "$cc_vendor-$cc_version" in
- gcc-[56].*)
+ gcc-[56789].*)
DEBUG_CFLAGS="-ftrapv -fno-common"
;;
*)
@@ -165,7 +165,7 @@ case "$cc_vendor-$cc_version" in
HIGH_OPT_CFLAGS="-O3"
DEBUG_OPT_CFLAGS=
;;
- gcc-[56].*)
+ gcc-[56789].*)
HIGH_OPT_CFLAGS="-O3"
DEBUG_OPT_CFLAGS="-Og"
;;
@@ -187,9 +187,53 @@ esac
# the information from the previous version and adding modifications to that.
case "$cc_vendor-$cc_version" in
-# When the gcc 7.x release is out, we should check for additional flags to
+# When the gcc 8.x release is out, we should check for additional flags to
# include and break it out into it's own section, like the other versions
# below. -QAK
+ gcc-[789].*)
+ # Append warning flags that only gcc 4.2+ knows about
+ # (none, or incorporated in -Wall / -Wextra now)
+
+ # Append warning flags that only gcc 4.3+ knows about
+ #
+ # Technically, variable-length arrays are part of the C99 standard, but
+ # we should approach them a bit cautiously... -QAK
+ H5_CFLAGS="$H5_CFLAGS -Wlogical-op -Wlarger-than=2048 -Wvla"
+
+ # Append warning flags that only gcc 4.4+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat"
+
+ # Append warning flags that only gcc 4.5+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants"
+
+ # Append warning flags that only gcc 4.6+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wdouble-promotion -Wtrampolines"
+ DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wsuggest-attribute=const"
+ NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-suggest-attribute=const"
+
+ # Append warning flags that only gcc 4.7+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wstack-usage=8192 -Wvector-operation-performance"
+ DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wsuggest-attribute=pure -Wsuggest-attribute=noreturn"
+ NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn"
+
+ # Append warning flags that only gcc 4.8+ knows about
+ DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wsuggest-attribute=format"
+ NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-suggest-attribute=format"
+
+ # Append warning flags that only gcc 4.9+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wdate-time"
+
+ # Append warning flags that only gcc 5.x+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Warray-bounds=2 -Wc99-c11-compat"
+
+ # Append warning flags that only gcc 6.x+ knows about
+ H5_CFLAGS="$H5_CFLAGS -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa -Wnormalized"
+
+ # Append warning flags that only gcc 7.x+ knows about
+ DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wstringop-overflow=2"
+ H5_CFLAGS="$H5_CFLAGS -Walloc-zero -Walloca -Wduplicated-branches -Wformat-overflow=2 -Wformat-truncation=2 -Wimplicit-fallthrough=5 -Wrestrict"
+ ;;
+
gcc-6*)
# Append warning flags that only gcc 4.2+ knows about
# (none, or incorporated in -Wall / -Wextra now)
@@ -227,7 +271,7 @@ case "$cc_vendor-$cc_version" in
H5_CFLAGS="$H5_CFLAGS -Warray-bounds=2 -Wc99-c11-compat"
# Append warning flags that only gcc 6.x+ knows about
- H5_CFLAGS="$H5_CFLAGS -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa"
+ H5_CFLAGS="$H5_CFLAGS -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa -Wnormalized"
;;
gcc-5*)
diff --git a/config/toolchain/crayle.cmake b/config/toolchain/crayle.cmake
index 159f43a..bf7cf69 100644
--- a/config/toolchain/crayle.cmake
+++ b/config/toolchain/crayle.cmake
@@ -8,13 +8,3 @@ set(CMAKE_Fortran_COMPILER ftn)
# the following is used if cross-compiling
set(CMAKE_CROSSCOMPILING_EMULATOR "")
-
-# option to use pre-generated H5Tinit.c file
-set(HDF5_USE_PREGEN OFF)
-# directory where H5Tinit.c file will be found
-#set(HDF5_USE_PREGEN_DIR "/lscratch1/lknox/HDF5_1_10_4/CMake-hdf5-1.10.4")
-
-# option to generate H5Tinit.c by running H5detect on knl compute node during build
-#set(HDF5_BATCH_H5DETECT ON)
-#set(HDF5_BATCH_CMD "sbatch")
-#set(HDF5_BATCH_H5DETECT_SCRIPT "knl_H5detect.sl")
diff --git a/configure.ac b/configure.ac
index 30fe725..33b3251 100644
--- a/configure.ac
+++ b/configure.ac
@@ -24,7 +24,7 @@ AC_PREREQ([2.69])
## NOTE: Do not forget to change the version number here when we do a
## release!!!
##
-AC_INIT([HDF5], [1.11.4], [help@hdfgroup.org])
+AC_INIT([HDF5], [1.11.6], [help@hdfgroup.org])
AC_CONFIG_SRCDIR([src/H5.c])
AC_CONFIG_HEADERS([src/H5config.h])
@@ -48,7 +48,7 @@ m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES([yes])]) # use silent rules where a
##
## By default, it is enabled. Users can configure with
## --disable-maintainer-mode to prevent running the autotools.
-AM_MAINTAINER_MODE([enable])
+AM_MAINTAINER_MODE([disable])
## ----------------------------------------------------------------------
## Set prefix default (install directory) to a directory in the build area.
@@ -943,6 +943,48 @@ fi
AM_CONDITIONAL([FORTRAN_SHARED_CONDITIONAL], [test "X$H5_FORTRAN_SHARED" = "Xyes"])
## ----------------------------------------------------------------------
+## Check if they would like to disable building tests
+##
+
+## This needs to be exposed for the library info file.
+AC_SUBST([HDF5_TESTS])
+
+## Default is to build tests
+HDF5_TESTS=yes
+
+AC_MSG_CHECKING([if building tests is disabled])
+
+AC_ARG_ENABLE([tests],
+ [AS_HELP_STRING([--enable-tests],
+ [Compile the HDF5 tests [default=yes]])],
+ [HDF5_TESTS=$enableval])
+
+if test "X$HDF5_TESTS" = "Xno"; then
+ echo "Building HDF5 tests is disabled"
+fi
+
+## ----------------------------------------------------------------------
+## Check if they would like to disable building tools
+##
+
+## This needs to be exposed for the library info file.
+AC_SUBST([HDF5_TOOLS])
+
+## Default is to build tests and tools
+HDF5_TOOLS=yes
+
+AC_MSG_CHECKING([if building tools is disabled])
+
+AC_ARG_ENABLE([tools],
+ [AS_HELP_STRING([--enable-tools],
+ [Compile the HDF5 tools [default=yes]])],
+ [HDF5_TOOLS=$enableval])
+
+if test "X$HDF5_TOOLS" = "Xno"; then
+ echo "Building HDF5 tools is disabled"
+fi
+
+## ----------------------------------------------------------------------
## Create libtool. If shared/static libraries are going to be enabled
## or disabled, it should happen before these macros.
LT_PREREQ([2.2])
@@ -2511,8 +2553,10 @@ AC_SUBST([PARALLEL_FILTERED_WRITES])
AC_SUBST([LARGE_PARALLEL_IO])
if test -n "$PARALLEL"; then
- ## The 'testpar' directory should participate in the build
- TESTPARALLEL=testpar
+ if test "X$HDF5_TESTS" = "Xyes"; then
+ ## The 'testpar' directory should participate in the build
+ TESTPARALLEL=testpar
+ fi
## We are building a parallel library
AC_DEFINE([HAVE_PARALLEL], [1], [Define if we have parallel support])
@@ -3361,11 +3405,13 @@ LDFLAGS="$saved_user_LDFLAGS"
## need to be compiled
AM_CONDITIONAL([BUILD_CXX_CONDITIONAL], [test "X$HDF_CXX" = "Xyes"])
-AM_CONDITIONAL([BUILD_PARALLEL_CONDITIONAL], [test -n "$TESTPARALLEL"])
+AM_CONDITIONAL([BUILD_PARALLEL_CONDITIONAL], [test "X$PARALLEL" = "Xyes"])
AM_CONDITIONAL([BUILD_FORTRAN_CONDITIONAL], [test "X$HDF_FORTRAN" = "Xyes"])
AM_CONDITIONAL([BUILD_JAVA_CONDITIONAL], [test "X$HDF_JAVA" = "Xyes"])
AM_CONDITIONAL([BUILD_HDF5_HL_CONDITIONAL], [test "X$HDF5_HL" = "Xyes"])
-
+AM_CONDITIONAL([BUILD_TESTS_CONDITIONAL], [test "X$HDF5_TESTS" = "Xyes"])
+AM_CONDITIONAL([BUILD_TESTS_PARALLEL_CONDITIONAL], [test -n "$TESTPARALLEL"])
+AM_CONDITIONAL([BUILD_TOOLS_CONDITIONAL], [test "X$HDF5_TOOLS" = "Xyes"])
## ----------------------------------------------------------------------
## Build the Makefiles.
@@ -3477,10 +3523,12 @@ AC_CONFIG_FILES([src/libhdf5.settings
test/testabort_fail.sh
test/testcheck_version.sh
test/testerror.sh
+ test/testexternal_env.sh
test/testflushrefresh.sh
test/testlibinfo.sh
test/testlinks_env.sh
test/testswmr.sh
+ test/testvds_env.sh
test/testvdsswmr.sh
test/test_filter_plugin.sh
test/test_usecases.sh
@@ -3498,7 +3546,6 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/src/h5ls/Makefile
tools/src/h5copy/Makefile
tools/src/misc/Makefile
- tools/src/misc/h5cc
tools/src/h5stat/Makefile
tools/test/Makefile
tools/test/h5dump/Makefile
@@ -3538,6 +3585,8 @@ AC_CONFIG_FILES([src/libhdf5.settings
examples/Makefile
examples/run-c-ex.sh
examples/testh5cc.sh
+ bin/h5cc
+ bin/Makefile
c++/Makefile
c++/src/Makefile
c++/src/h5c++
@@ -3600,7 +3649,7 @@ AC_CONFIG_COMMANDS([.classes], [], [$MKDIR_P java/src/.classes;
AC_OUTPUT
-chmod 755 tools/src/misc/h5cc
+chmod 755 src/h5cc
if test "X$HDF_CXX" = "Xyes"; then
chmod 755 c++/src/h5c++
fi
diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt
index 2239d64..6e1f79d 100644
--- a/examples/CMakeLists.txt
+++ b/examples/CMakeLists.txt
@@ -41,32 +41,28 @@ set (examples
foreach (example ${examples})
add_executable (${example} ${HDF5_EXAMPLES_SOURCE_DIR}/${example}.c)
- target_include_directories(${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (${example} STATIC)
- target_link_libraries (${example} PRIVATE ${HDF5_LIB_TARGET})
- set_target_properties (${example} PROPERTIES FOLDER examples)
- if (BUILD_SHARED_LIBS)
- add_executable (${example}-shared ${HDF5_EXAMPLES_SOURCE_DIR}/${example}.c)
- target_include_directories(${example}-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (${example}-shared SHARED)
- target_link_libraries (${example}-shared PRIVATE ${HDF5_LIBSH_TARGET})
- set_target_properties (${example}-shared PROPERTIES FOLDER examples)
+ target_include_directories (${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (${example} STATIC)
+ target_link_libraries (${example} PRIVATE ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (${example} SHARED)
+ target_link_libraries (${example} PRIVATE ${HDF5_LIBSH_TARGET})
endif ()
+ set_target_properties (${example} PROPERTIES FOLDER examples)
endforeach ()
if (H5_HAVE_PARALLEL)
add_executable (ph5example ${HDF5_EXAMPLES_SOURCE_DIR}/ph5example.c)
- target_include_directories(ph5example PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (ph5example STATIC)
- target_link_libraries (ph5example PRIVATE ${HDF5_LIB_TARGET} ${MPI_C_LIBRARIES})
- set_target_properties (ph5example PROPERTIES FOLDER examples)
- if (BUILD_SHARED_LIBS)
- add_executable (ph5example-shared ${HDF5_EXAMPLES_SOURCE_DIR}/ph5example.c)
- target_include_directories(ph5example-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (ph5example-shared SHARED)
- target_link_libraries (ph5example-shared PRIVATE ${HDF5_LIBSH_TARGET} ${MPI_C_LIBRARIES})
- set_target_properties (ph5example-shared PROPERTIES FOLDER examples)
+ target_include_directories (ph5example PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (ph5example STATIC)
+ target_link_libraries (ph5example PRIVATE ${HDF5_LIB_TARGET} ${MPI_C_LIBRARIES})
+ else ()
+ TARGET_C_PROPERTIES (ph5example SHARED)
+ target_link_libraries (ph5example PRIVATE ${HDF5_LIBSH_TARGET} ${MPI_C_LIBRARIES})
endif ()
+ set_target_properties (ph5example PROPERTIES FOLDER examples)
endif ()
if (BUILD_TESTING)
diff --git a/examples/CMakeTests.cmake b/examples/CMakeTests.cmake
index dd1e03b..6cab7dd 100644
--- a/examples/CMakeTests.cmake
+++ b/examples/CMakeTests.cmake
@@ -16,93 +16,8 @@
##############################################################################
##############################################################################
file (MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/red ${PROJECT_BINARY_DIR}/blue ${PROJECT_BINARY_DIR}/u2w)
- if (BUILD_SHARED_LIBS)
- file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/H5EX-shared")
- file (MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/H5EX-shared/red ${PROJECT_BINARY_DIR}/H5EX-shared/blue ${PROJECT_BINARY_DIR}/H5EX-shared/u2w)
- endif ()
- # Remove any output file left over from previous test run
- add_test (
- NAME EXAMPLES-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- Attributes.h5
- btrees_file.h5
- cmprss.h5
- default_file.h5
- dset.h5
- extend.h5
- extlink_prefix_source.h5
- extlink_source.h5
- extlink_target.h5
- group.h5
- groups.h5
- hard_link.h5
- mount1.h5
- mount2.h5
- one_index_file.h5
- only_dspaces_and_attrs_file.h5
- only_huge_mesgs_file.h5
- REF_REG.h5
- refere.h5
- SDS.h5
- SDScompound.h5
- SDSextendible.h5
- Select.h5
- separate_indexes_file.h5
- small_lists_file.h5
- soft_link.h5
- subset.h5
- unix2win.h5
- blue/prefix_target.h5
- red/prefix_target.h5
- u2w/u2w_target.h5
- vds.h5
- vds-exc.h5
- vds-excalibur.h5
- vds-exclim.h5
- vds-percival.h5
- vds-percival-unlim.h5
- vds-percival-unlim-maxmin.h5
- a.h5
- b.h5
- c.h5
- d.h5
- vds-simpleIO.h5
- vds-eiger.h5
- )
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES-clear-objects PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES-clear-objects")
-
- foreach (example ${examples})
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME EXAMPLES-${example} COMMAND $<TARGET_FILE:${example}>)
- else ()
- add_test (NAME EXAMPLES-${example} COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:${example}>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_OUTPUT=${example}.txt"
- #-D "TEST_REFERENCE=${example}.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES-${example} PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES-${example}")
- endforeach ()
-
- if (BUILD_SHARED_LIBS)
- # Remove any output file left over from previous test run
- add_test (
- NAME EXAMPLES-shared-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
+ set (test_CLEANFILES
Attributes.h5
btrees_file.h5
cmprss.h5
@@ -131,6 +46,9 @@
soft_link.h5
subset.h5
unix2win.h5
+ blue/prefix_target.h5
+ red/prefix_target.h5
+ u2w/u2w_target.h5
vds.h5
vds-exc.h5
vds-excalibur.h5
@@ -144,46 +62,46 @@
d.h5
vds-simpleIO.h5
vds-eiger.h5
- blue/prefix_target.h5
- red/prefix_target.h5
- u2w/u2w_target.h5
- WORKING_DIRECTORY
- ${PROJECT_BINARY_DIR}/H5EX-shared
- )
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES-shared-clear-objects PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES-shared-clear-objects")
+ )
- foreach (example ${examples})
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME EXAMPLES-shared-${example} COMMAND $<TARGET_FILE:${example}-shared>)
- else ()
- add_test (NAME EXAMPLES-shared-${example} COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:${example}>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_OUTPUT=${example}.txt"
- #-D "TEST_REFERENCE=${example}.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/H5EX-shared"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
- set_tests_properties (EXAMPLES-shared-${example} PROPERTIES WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/H5EX-shared)
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES-shared-${example} PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES-shared-${example}")
- endforeach ()
+ # Remove any output file left over from previous test run
+ add_test (
+ NAME EXAMPLES-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove ${test_CLEANFILES}
+ )
+ if (last_test)
+ set_tests_properties (EXAMPLES-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
+ set (last_test "EXAMPLES-clear-objects")
+
+ foreach (example ${examples})
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (NAME EXAMPLES-${example} COMMAND $<TARGET_FILE:${example}>)
+ else ()
+ add_test (NAME EXAMPLES-${example} COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:${example}>"
+ -D "TEST_ARGS:STRING="
+ -D "TEST_EXPECT=0"
+ -D "TEST_SKIP_COMPARE=TRUE"
+ -D "TEST_OUTPUT=${example}.txt"
+ #-D "TEST_REFERENCE=${example}.out"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ endif ()
+ if (last_test)
+ set_tests_properties (EXAMPLES-${example} PROPERTIES DEPENDS ${last_test})
+ endif ()
+ set (last_test "EXAMPLES-${example}")
+ endforeach ()
### Windows pops up a modal permission dialog on this test
if (H5_HAVE_PARALLEL AND NOT WIN32)
if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME EXAMPLES_PAR-ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:ph5example> ${MPIEXEC_POSTFLAGS})
+ add_test (NAME MPI_TEST_EXAMPLES-ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:ph5example> ${MPIEXEC_POSTFLAGS})
else ()
- add_test (NAME EXAMPLES_PAR-ph5example COMMAND "${CMAKE_COMMAND}"
+ add_test (NAME MPI_TEST_EXAMPLES-ph5example COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=${MPIEXEC_EXECUTABLE};${MPIEXEC_NUMPROC_FLAG};${MPIEXEC_MAX_NUMPROCS};${MPIEXEC_PREFLAGS};$<TARGET_FILE:ph5example>;${MPIEXEC_POSTFLAGS}"
-D "TEST_ARGS:STRING="
-D "TEST_EXPECT=0"
@@ -194,29 +112,8 @@
-P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES_PAR-ph5example PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES_PAR-ph5example")
- if (BUILD_SHARED_LIBS)
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME EXAMPLES_PAR-shared-ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:ph5example-shared> ${MPIEXEC_POSTFLAGS})
- else ()
- add_test (NAME EXAMPLES_PAR-shared-ph5example COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=${MPIEXEC_EXECUTABLE};${MPIEXEC_NUMPROC_FLAG};${MPIEXEC_MAX_NUMPROCS};${MPIEXEC_PREFLAGS};$<TARGET_FILE:ph5example-shared>;${MPIEXEC_POSTFLAGS}"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_OUTPUT=ph5example-shared.out"
- -D "TEST_REFERENCE:STRING=PHDF5 tests finished with no errors"
- -D "TEST_FILTER:STRING=PHDF5 tests finished with no errors"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/H5EX-shared"
- -P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake"
- )
- endif ()
- set_tests_properties (EXAMPLES_PAR-shared-ph5example PROPERTIES WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/H5EX-shared)
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (EXAMPLES_PAR-shared-ph5example PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "EXAMPLES_PAR-shared-ph5example")
+ if (last_test)
+ set_tests_properties (MPI_TEST_EXAMPLES-ph5example PROPERTIES DEPENDS ${last_test})
endif ()
+ set (last_test "MPI_TEST_EXAMPLES-ph5example")
endif ()
diff --git a/fortran/Makefile.am b/fortran/Makefile.am
index 38084b9..c07fa3e 100644
--- a/fortran/Makefile.am
+++ b/fortran/Makefile.am
@@ -22,14 +22,27 @@
include $(top_srcdir)/config/commence.am
-if BUILD_PARALLEL_CONDITIONAL
+if BUILD_TESTS_PARALLEL_CONDITIONAL
TESTPARALLEL_DIR=testpar
+else
+ TESTPARALLEL_DIR=
+endif
+if BUILD_TESTS_CONDITIONAL
+ TESTSERIAL_DIR=test
+else
+ TESTSERIAL_DIR=
endif
# Subdirectories in build order, not including examples directory
## Only recurse into subdirectories if HDF5 is configured to use Fortran.
if BUILD_FORTRAN_CONDITIONAL
- SUBDIRS=src test $(TESTPARALLEL_DIR)
+ SUBDIRS=src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR)
+
+# Test with just the native connector, with a single pass-through connector
+# and with a doubly-stacked pass-through.
+VOL_LIST = native "pass_through under_vol=0;under_info={}" \
+ "pass_through under_vol=505;under_info={under_vol=0;under_info={}}"
+
endif
# All directories that have Makefiles
diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt
index 0c570c6..e8dddd3 100644
--- a/fortran/examples/CMakeLists.txt
+++ b/fortran/examples/CMakeLists.txt
@@ -35,56 +35,43 @@ set (F2003_examples
foreach (example ${examples})
add_executable (f90_ex_${example} ${HDF5_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
- target_include_directories (f90_ex_${example}
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
- )
target_compile_options(f90_ex_${example}
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries (f90_ex_${example}
- PRIVATE
- ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
- )
# set_property(TARGET f90_ex_${example} APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
# )
# set_property(TARGET f90_ex_${example} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:>
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
# )
if(MSVC)
set_property(TARGET f90_ex_${example} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
- set_target_properties (f90_ex_${example} PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER examples/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
- )
- if (BUILD_SHARED_LIBS)
- add_executable (f90_ex_${example}-shared ${HDF5_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
- target_include_directories (f90_ex_${example}-shared
+ if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (f90_ex_${example}
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
)
- target_compile_options(f90_ex_${example}-shared
+ target_link_libraries (f90_ex_${example}
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
+ )
+ set_target_properties (f90_ex_${example} PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER examples/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
)
- target_link_libraries (f90_ex_${example}-shared
+ else ()
+ target_include_directories (f90_ex_${example}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ )
+ target_link_libraries (f90_ex_${example}
PRIVATE
${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}
)
-# set_property(TARGET f90_ex_${example}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET f90_ex_${example}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET f90_ex_${example}-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (f90_ex_${example}-shared PROPERTIES
+ set_target_properties (f90_ex_${example} PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER examples/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
@@ -94,18 +81,10 @@ endforeach ()
foreach (example ${F2003_examples})
add_executable (f03_ex_${example} ${HDF5_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
- target_include_directories (f03_ex_${example}
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
- )
target_compile_options(f03_ex_${example}
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries (f03_ex_${example}
- PRIVATE
- ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
- )
# set_property(TARGET f03_ex_${example} APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
# )
@@ -115,35 +94,30 @@ foreach (example ${F2003_examples})
if(MSVC)
set_property(TARGET f03_ex_${example} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
- set_target_properties (f03_ex_${example} PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER examples/fortran03
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
- )
- if (BUILD_SHARED_LIBS)
- add_executable (f03_ex_${example}-shared ${HDF5_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
- target_include_directories (f03_ex_${example}-shared
+ if (NOT ONLY_SHARED_LIBS)
+ target_include_directories (f03_ex_${example}
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
)
- target_compile_options(f03_ex_${example}-shared
+ target_link_libraries (f03_ex_${example}
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
)
- target_link_libraries (f03_ex_${example}-shared
+ set_target_properties (f03_ex_${example} PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER examples/fortran03
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ else ()
+ target_include_directories (f03_ex_${example}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ )
+ target_link_libraries (f03_ex_${example}
PRIVATE
${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}
)
-# set_property(TARGET f03_ex_${example}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET f03_ex_${example}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET f03_ex_${example}-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (f03_ex_${example}-shared PROPERTIES
+ set_target_properties (f03_ex_${example} PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER examples/fortran03
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
@@ -153,19 +127,10 @@ endforeach ()
if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND)
add_executable (f90_ex_ph5example ${HDF5_F90_EXAMPLES_SOURCE_DIR}/ph5example.f90)
- target_include_directories (f90_ex_ph5example
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
- )
target_compile_options(f90_ex_ph5example
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries (f90_ex_ph5example
- PRIVATE
- ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
- $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}>
- )
# set_property(TARGET f90_ex_ph5example APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
# )
@@ -175,36 +140,32 @@ if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND)
if(MSVC)
set_property(TARGET f90_ex_ph5example PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
- set_target_properties (f90_ex_ph5example PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER examples/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
- )
- if (BUILD_SHARED_LIBS)
- add_executable (f90_ex_ph5example-shared ${HDF5_F90_EXAMPLES_SOURCE_DIR}/ph5example.f90)
- target_include_directories (f90_ex_ph5example-shared
+ if (NOT ONLY_SHARED_LIBS)
+ target_include_directories (f90_ex_ph5example
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
)
- target_compile_options(f90_ex_ph5example-shared
+ target_link_libraries (f90_ex_ph5example
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
+ $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}>
+ )
+ set_target_properties (f90_ex_ph5example PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER examples/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ else ()
+ target_include_directories (f90_ex_ph5example
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
)
- target_link_libraries (f90_ex_ph5example-shared
+ target_link_libraries (f90_ex_ph5example
PRIVATE
${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}
$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}>
)
-# set_property(TARGET f90_ex_ph5example-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET f90_ex_ph5example-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET f90_ex_ph5example-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (f90_ex_ph5example-shared PROPERTIES
+ set_target_properties (f90_ex_ph5example PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER examples/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
diff --git a/fortran/examples/CMakeTests.cmake b/fortran/examples/CMakeTests.cmake
index 323cf91..1ad606c 100644
--- a/fortran/examples/CMakeTests.cmake
+++ b/fortran/examples/CMakeTests.cmake
@@ -16,36 +16,7 @@
##############################################################################
##############################################################################
- # Remove any output file left over from previous test run
- add_test (
- NAME f90_ex-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- compound.h5
- copy1.h5
- copy2.h5
- dsetf.h5
- extend.h5
- FORTRAN.h5
- groupf.h5
- groupsf.h5
- h5_cmprss.h5
- mount1.h5
- mount2.h5
- sdsf.h5
- subset.h5
- SDScompound.h5
- test.h5
- )
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (f90_ex-clear-objects PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "f90_ex-clear-objects")
- if (BUILD_SHARED_LIBS)
- add_test (
- NAME f90_ex-shared-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
+ set (test_CLEANFILES
compound.h5
copy1.h5
copy2.h5
@@ -61,12 +32,18 @@
subset.h5
SDScompound.h5
test.h5
- )
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (f90_ex-shared-clear-objects PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "f90_ex-shared-clear-objects")
+ )
+
+ # Remove any output file left over from previous test run
+ add_test (
+ NAME f90_ex-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove ${test_CLEANFILES}
+ )
+ if (last_test)
+ set_tests_properties (f90_ex-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
+ set (last_test "f90_ex-clear-objects")
foreach (example ${examples})
if (HDF5_ENABLE_USING_MEMCHECKER)
@@ -83,30 +60,10 @@ foreach (example ${examples})
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (f90_ex_${example} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "f90_ex_${example}")
- if (BUILD_SHARED_LIBS)
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME f90_ex-shared_${example} COMMAND $<TARGET_FILE:f90_ex_${example}-shared>)
- else ()
- add_test (NAME f90_ex-shared_${example} COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:f90_ex_${example}-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_OUTPUT=f90_ex_${example}-shared.txt"
- #-D "TEST_REFERENCE=f90_ex_${example}-shared.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (f90_ex-shared_${example} PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "f90_ex-shared_${example}")
- endif ()
endforeach ()
foreach (example ${F2003_examples})
@@ -124,35 +81,12 @@ foreach (example ${F2003_examples})
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (f03_ex_${example} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "f03_ex_${example}")
- if (BUILD_SHARED_LIBS)
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME f03_ex-shared_${example} COMMAND $<TARGET_FILE:f03_ex_${example}-shared>)
- else ()
- add_test (NAME f03_ex-shared_${example} COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_OUTPUT=f03_ex_${example}-shared.txt"
- #-D "TEST_REFERENCE=f03_ex_${example}-shared.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (f03_ex-shared_${example} PROPERTIES DEPENDS ${last_test})
- endif ()
- set (last_test "f03_ex-shared_${example}")
- endif ()
endforeach ()
if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND)
- add_test (NAME f90_ex_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS})
- if (BUILD_SHARED_LIBS)
- add_test (NAME f90_ex-shared_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS})
- endif ()
+ add_test (NAME MPI_TEST_f90_ex_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS})
endif ()
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index f71e820..b01e4d4 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -40,7 +40,7 @@ set (Fortran_COMPILER_ID CMAKE_Fortran_COMPILER_ID)
#-----------------------------------------------------------------------------
add_executable (H5_buildiface ${HDF5_F90_SRC_SOURCE_DIR}/H5_buildiface.F90)
-target_include_directories(H5_buildiface
+target_include_directories (H5_buildiface
PRIVATE
"${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}"
)
@@ -69,24 +69,28 @@ if (BUILD_SHARED_LIBS)
file (MAKE_DIRECTORY "${HDF5_F90_BINARY_DIR}/shared")
set (MODSH_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/shared/${HDF_CFG_BUILD_TYPE})
endif ()
-file (MAKE_DIRECTORY "${HDF5_F90_BINARY_DIR}/static")
-set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
+if (NOT ONLY_SHARED_LIBS)
+ file (MAKE_DIRECTORY "${HDF5_F90_BINARY_DIR}/static")
+ set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
+endif ()
#-----------------------------------------------------------------------------
add_executable (H5match_types
${HDF5_F90_BINARY_DIR}/H5fort_type_defines.h
${HDF5_F90_SRC_SOURCE_DIR}/H5match_types.c
)
-target_include_directories(H5match_types PRIVATE "${HDF5_BINARY_DIR};${HDF5_SRC_DIR};${HDF5_F90_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-add_custom_command (
- OUTPUT ${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h
- ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90
- COMMAND $<TARGET_FILE:H5match_types>
- WORKING_DIRECTORY ${HDF5_F90_BINARY_DIR}/static
- DEPENDS H5match_types
-)
-set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h PROPERTIES GENERATED TRUE)
-set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90 PROPERTIES GENERATED TRUE)
+target_include_directories (H5match_types PRIVATE "${HDF5_BINARY_DIR};${HDF5_SRC_DIR};${HDF5_F90_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+if (NOT ONLY_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h
+ ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90
+ COMMAND $<TARGET_FILE:H5match_types>
+ WORKING_DIRECTORY ${HDF5_F90_BINARY_DIR}/static
+ DEPENDS H5match_types
+ )
+ set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h PROPERTIES GENERATED TRUE)
+ set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90 PROPERTIES GENERATED TRUE)
+endif ()
if (BUILD_SHARED_LIBS)
add_custom_command (
OUTPUT ${HDF5_F90_BINARY_DIR}/shared/H5f90i_gen.h
@@ -131,24 +135,26 @@ set (f90CStub_C_SHHDRS
${HDF5_F90_BINARY_DIR}/shared/H5f90i_gen.h
)
-add_library (${HDF5_F90_C_LIB_TARGET} STATIC ${f90CStub_C_SOURCES} ${f90CStub_C_HDRS})
-target_include_directories(${HDF5_F90_C_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-TARGET_C_PROPERTIES (${HDF5_F90_C_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_F90_C_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_F90_C_LIB_TARGET}")
-H5_SET_LIB_OPTIONS (${HDF5_F90_C_LIB_TARGET} ${HDF5_F90_C_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_F90_C_LIB_TARGET} PROPERTIES
- FOLDER libraries/fortran
- LINKER_LANGUAGE C
-)
-set (install_targets ${HDF5_F90_C_LIB_TARGET})
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_F90_C_LIB_TARGET} STATIC ${f90CStub_C_SOURCES} ${f90CStub_C_HDRS})
+ target_include_directories (${HDF5_F90_C_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ TARGET_C_PROPERTIES (${HDF5_F90_C_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_F90_C_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_F90_C_LIB_TARGET}")
+ H5_SET_LIB_OPTIONS (${HDF5_F90_C_LIB_TARGET} ${HDF5_F90_C_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_F90_C_LIB_TARGET} PROPERTIES
+ FOLDER libraries/fortran
+ LINKER_LANGUAGE C
+ )
+ set (install_targets ${HDF5_F90_C_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_F90_C_LIBSH_TARGET} SHARED ${f90CStub_C_SOURCES} ${f90CStub_C_SHHDRS})
- target_include_directories(${HDF5_F90_C_LIBSH_TARGET}
+ target_include_directories (${HDF5_F90_C_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -174,17 +180,19 @@ set (f90_F_GEN_SOURCES
${HDF5_F90_SRC_SOURCE_DIR}/H5Dff.F90
${HDF5_F90_SRC_SOURCE_DIR}/H5Pff.F90
)
-add_custom_command (
- OUTPUT ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
- COMMAND $<TARGET_FILE:H5_buildiface>
- WORKING_DIRECTORY ${HDF5_F90_BINARY_DIR}/static
- DEPENDS ${f90_F_GEN_SOURCES}
- COMMENT "Generating the H5_gen.F90 file"
-)
-add_custom_target (H5gen ALL
- DEPENDS ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
-)
-set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5_gen.F90 PROPERTIES GENERATED TRUE)
+if (NOT ONLY_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
+ COMMAND $<TARGET_FILE:H5_buildiface>
+ WORKING_DIRECTORY ${HDF5_F90_BINARY_DIR}/static
+ DEPENDS ${f90_F_GEN_SOURCES}
+ COMMENT "Generating the H5_gen.F90 file"
+ )
+ add_custom_target (H5gen ALL
+ DEPENDS ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
+ )
+ set_source_files_properties (${HDF5_F90_BINARY_DIR}/static/H5_gen.F90 PROPERTIES GENERATED TRUE)
+endif ()
if (BUILD_SHARED_LIBS)
add_custom_command (
@@ -217,21 +225,24 @@ set (f90_F_BASE_SOURCES
${HDF5_F90_SRC_SOURCE_DIR}/H5Rff.F90
${HDF5_F90_SRC_SOURCE_DIR}/H5Sff.F90
${HDF5_F90_SRC_SOURCE_DIR}/H5Tff.F90
+ ${HDF5_F90_SRC_SOURCE_DIR}/H5VLff.F90
${HDF5_F90_SRC_SOURCE_DIR}/H5Zff.F90
)
-set (f90_F_SOURCES
- # generated file
- ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90
+if (NOT ONLY_SHARED_LIBS)
+ set (f90_F_SOURCES
+ # generated file
+ ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90
- ${f90_F_BASE_SOURCES}
+ ${f90_F_BASE_SOURCES}
- # generated file
- ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
+ # generated file
+ ${HDF5_F90_BINARY_DIR}/static/H5_gen.F90
- # normal distribution
- ${HDF5_F90_SRC_SOURCE_DIR}/HDF5.F90
-)
+ # normal distribution
+ ${HDF5_F90_SRC_SOURCE_DIR}/HDF5.F90
+ )
+endif ()
if (BUILD_SHARED_LIBS)
set (f90_F_SOURCES_SHARED
# generated file
@@ -250,43 +261,45 @@ endif ()
#-----------------------------------------------------------------------------
# Add Main fortran library
#-----------------------------------------------------------------------------
-add_library (${HDF5_F90_LIB_TARGET} STATIC ${f90_F_SOURCES})
-target_include_directories (${HDF5_F90_LIB_TARGET}
- PRIVATE
- "${HDF5_F90_SRC_SOURCE_DIR};${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
- INTERFACE
- "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-target_compile_definitions(${HDF5_F90_LIB_TARGET}
- PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
-)
-target_link_libraries (${HDF5_F90_LIB_TARGET}
- PUBLIC
- ${HDF5_F90_C_LIB_TARGET}
- PRIVATE
- ${LINK_Fortran_LIBS}
- $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}>
-)
-#set_property(TARGET ${HDF5_F90_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-#)
-#set_property(TARGET ${HDF5_F90_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-#)
-if(MSVC)
- set_property(TARGET ${HDF5_F90_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
-endif()
-set_target_properties (${HDF5_F90_LIB_TARGET} PROPERTIES
- FOLDER libraries/fortran
- LINKER_LANGUAGE Fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-H5_SET_LIB_OPTIONS (${HDF5_F90_LIB_TARGET} ${HDF5_F90_LIB_NAME} STATIC 0)
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_F90_LIB_TARGET}")
-set (install_targets ${install_targets} ${HDF5_F90_LIB_TARGET})
-add_dependencies(${HDF5_F90_LIB_TARGET} H5gen)
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_F90_LIB_TARGET} STATIC ${f90_F_SOURCES})
+ target_include_directories (${HDF5_F90_LIB_TARGET}
+ PRIVATE
+ "${HDF5_F90_SRC_SOURCE_DIR};${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
+ INTERFACE
+ "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ target_compile_definitions(${HDF5_F90_LIB_TARGET}
+ PRIVATE
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ )
+ target_link_libraries (${HDF5_F90_LIB_TARGET}
+ PUBLIC
+ ${HDF5_F90_C_LIB_TARGET}
+ PRIVATE
+ ${LINK_Fortran_LIBS}
+ $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}>
+ )
+# set_property(TARGET ${HDF5_F90_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
+# )
+# set_property(TARGET ${HDF5_F90_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
+# )
+ if(MSVC)
+ set_property(TARGET ${HDF5_F90_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
+ endif()
+ set_target_properties (${HDF5_F90_LIB_TARGET} PROPERTIES
+ FOLDER libraries/fortran
+ LINKER_LANGUAGE Fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ H5_SET_LIB_OPTIONS (${HDF5_F90_LIB_TARGET} ${HDF5_F90_LIB_NAME} STATIC 0)
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_F90_LIB_TARGET}")
+ set (install_targets ${install_targets} ${HDF5_F90_LIB_TARGET})
+ add_dependencies(${HDF5_F90_LIB_TARGET} H5gen)
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_F90_LIBSH_TARGET} SHARED ${f90_F_SOURCES_SHARED})
@@ -351,35 +364,38 @@ install (
fortheaders
)
-set (mod_files
- ${MOD_BUILD_DIR}/h5fortran_types.mod
- ${MOD_BUILD_DIR}/hdf5.mod
- ${MOD_BUILD_DIR}/h5fortkit.mod
- ${MOD_BUILD_DIR}/h5global.mod
- ${MOD_BUILD_DIR}/h5a.mod
- ${MOD_BUILD_DIR}/h5d.mod
- ${MOD_BUILD_DIR}/h5e.mod
- ${MOD_BUILD_DIR}/h5f.mod
- ${MOD_BUILD_DIR}/h5g.mod
- ${MOD_BUILD_DIR}/h5i.mod
- ${MOD_BUILD_DIR}/h5l.mod
- ${MOD_BUILD_DIR}/h5lib.mod
- ${MOD_BUILD_DIR}/h5o.mod
- ${MOD_BUILD_DIR}/h5p.mod
- ${MOD_BUILD_DIR}/h5r.mod
- ${MOD_BUILD_DIR}/h5s.mod
- ${MOD_BUILD_DIR}/h5t.mod
- ${MOD_BUILD_DIR}/h5z.mod
- ${MOD_BUILD_DIR}/h5_gen.mod
-)
-install (
- FILES
- ${mod_files}
- DESTINATION
- ${HDF5_INSTALL_INCLUDE_DIR}/static
- COMPONENT
- fortheaders
-)
+if (NOT ONLY_SHARED_LIBS)
+ set (mod_files
+ ${MOD_BUILD_DIR}/h5fortran_types.mod
+ ${MOD_BUILD_DIR}/hdf5.mod
+ ${MOD_BUILD_DIR}/h5fortkit.mod
+ ${MOD_BUILD_DIR}/h5global.mod
+ ${MOD_BUILD_DIR}/h5a.mod
+ ${MOD_BUILD_DIR}/h5d.mod
+ ${MOD_BUILD_DIR}/h5e.mod
+ ${MOD_BUILD_DIR}/h5f.mod
+ ${MOD_BUILD_DIR}/h5g.mod
+ ${MOD_BUILD_DIR}/h5i.mod
+ ${MOD_BUILD_DIR}/h5l.mod
+ ${MOD_BUILD_DIR}/h5lib.mod
+ ${MOD_BUILD_DIR}/h5o.mod
+ ${MOD_BUILD_DIR}/h5p.mod
+ ${MOD_BUILD_DIR}/h5r.mod
+ ${MOD_BUILD_DIR}/h5s.mod
+ ${MOD_BUILD_DIR}/h5t.mod
+ ${MOD_BUILD_DIR}/h5vl.mod
+ ${MOD_BUILD_DIR}/h5z.mod
+ ${MOD_BUILD_DIR}/h5_gen.mod
+ )
+ install (
+ FILES
+ ${mod_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}/static
+ COMPONENT
+ fortheaders
+ )
+endif ()
if (BUILD_SHARED_LIBS)
set (modsh_files
@@ -400,6 +416,7 @@ if (BUILD_SHARED_LIBS)
${MODSH_BUILD_DIR}/h5r.mod
${MODSH_BUILD_DIR}/h5s.mod
${MODSH_BUILD_DIR}/h5t.mod
+ ${MODSH_BUILD_DIR}/h5vl.mod
${MODSH_BUILD_DIR}/h5z.mod
${MODSH_BUILD_DIR}/h5_gen.mod
)
@@ -421,8 +438,10 @@ if (HDF5_EXPORTED_TARGETS)
INSTALL_TARGET_PDB (${HDF5_F90_C_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
#INSTALL_TARGET_PDB (${HDF5_F90_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_F90_C_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
- #INSTALL_TARGET_PDB (${HDF5_F90_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_F90_C_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
+ #INSTALL_TARGET_PDB (${HDF5_F90_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} fortlibraries)
+ endif ()
install (
TARGETS
@@ -436,3 +455,53 @@ if (HDF5_EXPORTED_TARGETS)
INCLUDES DESTINATION include
)
endif ()
+
+#-----------------------------------------------------------------------------
+# Create pkgconfig files
+#-----------------------------------------------------------------------------
+set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
+set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
+set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}")
+set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
+
+set (_PKG_CONFIG_LIBS_PRIVATE)
+
+if (NOT ONLY_SHARED_LIBS)
+ set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_F90_LIB_CORENAME}")
+endif ()
+if (BUILD_SHARED_LIBS)
+ set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_F90_LIB_CORENAME}")
+endif ()
+
+set (_PKG_CONFIG_REQUIRES "${HDF5_LIB_CORENAME}")
+set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_LIB_CORENAME}")
+
+configure_file (
+ ${HDF_RESOURCES_DIR}/libhdf5.pc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_F90_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+ @ONLY
+)
+install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_F90_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+ DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig
+ COMPONENT fortlibraries
+)
+
+if (NOT WIN32)
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5fc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5fc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT fortlibraries
+ )
+endif ()
+
+
diff --git a/fortran/src/H5Ff.c b/fortran/src/H5Ff.c
index a4e786e..12fb7ed 100644
--- a/fortran/src/H5Ff.c
+++ b/fortran/src/H5Ff.c
@@ -632,6 +632,40 @@ done:
return ret_value;
}
+/****if* H5Ff/h5fget_fileno_c
+ * NAME
+ * h5fget_fileno_c
+ * PURPOSE
+ * Call H5Fget_fileno to get file number
+ * INPUTS
+ * file_id - file identifier
+ * OUTPUTS
+ * fileno - file number for open file
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * Quincey Koziol
+ * Saturday, April 13, 2019
+ * SOURCE
+*/
+int_f
+h5fget_fileno_c(hid_t_f *file_id, int_f *fileno)
+/******/
+{
+ unsigned long fileno_c;
+ herr_t ret_value=0; /* Return value */
+
+ /*
+ * Call H5Fget_filesize function
+ */
+ if ((ret_value = H5Fget_fileno((hid_t)*file_id, &fileno_c)) < 0)
+ HGOTO_DONE(FAIL);
+ *fileno = (hsize_t_f)fileno_c;
+
+done:
+ return ret_value;
+}
+
/****if* H5Ff/h5fget_file_image_c
* NAME
* h5fget_file_image_c
diff --git a/fortran/src/H5Fff.F90 b/fortran/src/H5Fff.F90
index cc51f37..8574c06 100644
--- a/fortran/src/H5Fff.F90
+++ b/fortran/src/H5Fff.F90
@@ -591,7 +591,6 @@ CONTAINS
! is an HDF5 file
INTEGER, INTENT(OUT) :: hdferr ! Error code
!*****
- INTEGER(HID_T) :: access_prp_default
CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name
INTEGER(C_INT) :: flag ! "TRUE/FALSE/ERROR" flag from C routine
! to define status value.
@@ -886,6 +885,44 @@ CONTAINS
hdferr = h5fget_filesize_c(file_id, size)
END SUBROUTINE h5fget_filesize_f
+!****s* H5F/h5fget_fileno_f
+!
+! NAME
+! h5fget_fileno_f
+!
+! PURPOSE
+! Retrieves the file number of the HDF5 file.
+!
+! INPUTS
+! file_id - file identifier
+! OUTPUTS
+! fileno - file number
+! hdferr - Returns 0 if successful and -1 if fails
+!
+! AUTHOR
+! Quincey Koziol
+! April 13, 2019
+!
+! SOURCE
+ SUBROUTINE h5fget_fileno_f(file_id, fileno, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: file_id ! file identifier
+ INTEGER, INTENT(OUT) :: fileno ! File number
+ INTEGER, INTENT(OUT) :: hdferr ! Error code: 0 on success,
+ ! -1 if fail
+!*****
+ INTERFACE
+ INTEGER FUNCTION h5fget_fileno_c(file_id, fileno) &
+ BIND(C,NAME='h5fget_fileno_c')
+ IMPORT :: HID_T, HSIZE_T
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: file_id
+ INTEGER, INTENT(OUT) :: fileno
+ END FUNCTION h5fget_fileno_c
+ END INTERFACE
+ hdferr = h5fget_fileno_c(file_id, fileno)
+ END SUBROUTINE h5fget_fileno_f
+
!****s* H5F (F03)/h5fget_file_image_f_F03
!
! NAME
diff --git a/fortran/src/H5Pff.F90 b/fortran/src/H5Pff.F90
index 13a2953..0c0500d 100644
--- a/fortran/src/H5Pff.F90
+++ b/fortran/src/H5Pff.F90
@@ -9,7 +9,7 @@
! COPYRIGHT
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
! Copyright by The HDF Group. *
-! Copyright by the Board of Trustees of the University of Illinois. *S
+! Copyright by the Board of Trustees of the University of Illinois. *
! All rights reserved. *
! *
! This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -7929,7 +7929,7 @@ SUBROUTINE h5pget_virtual_filename_f(dcpl_id, index, name, hdferr, name_len)
INTERFACE
INTEGER(SIZE_T) FUNCTION h5pget_virtual_filename(dcpl_id, index, name, size) BIND(C, NAME='H5Pget_virtual_filename')
- IMPORT :: HID_T, SIZE_T, C_PTR, C_CHAR
+ IMPORT :: HID_T, SIZE_T, C_PTR
IMPLICIT NONE
INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
INTEGER(SIZE_T), INTENT(IN), VALUE :: index
@@ -7997,7 +7997,7 @@ SUBROUTINE h5pget_virtual_dsetname_f(dcpl_id, index, name, hdferr, name_len)
INTERFACE
INTEGER(SIZE_T) FUNCTION h5pget_virtual_dsetname(dcpl_id, index, name, size) BIND(C, NAME='H5Pget_virtual_dsetname')
- IMPORT :: HID_T, SIZE_T, C_PTR, C_CHAR
+ IMPORT :: HID_T, SIZE_T, C_PTR
IMPLICIT NONE
INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
INTEGER(SIZE_T), INTENT(IN), VALUE :: index
@@ -8018,7 +8018,6 @@ SUBROUTINE h5pget_virtual_dsetname_f(dcpl_id, index, name, hdferr, name_len)
ELSE
CALL HD5c2fstring(name,c_name,LEN(name))
ENDIF
-
ENDIF
END SUBROUTINE h5pget_virtual_dsetname_f
@@ -8115,5 +8114,97 @@ END SUBROUTINE h5pget_virtual_dsetname_f
END SUBROUTINE h5pset_dset_no_attrs_hint_f
+!****s* H5P/H5Pset_vol_f
+!
+! NAME
+! H5Pset_vol_f
+!
+! PURPOSE
+! Set the file VOL connector (VOL_ID) for a file access
+! property list (PLIST_ID)
+! INPUTS
+! plist_id - access property list identifier.
+! new_vol_id - VOL connector id.
+!
+! OUTPUTS
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! OPTIONAL
+! new_vol_info - VOL connector info.
+!
+! AUTHOR
+! M.S. Breitenfeld
+! May 2019
+!
+! Fortran Interface:
+ SUBROUTINE h5pset_vol_f(plist_id, new_vol_id, hdferr, new_vol_info)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: plist_id
+ INTEGER(HID_T) , INTENT(IN) :: new_vol_id
+ INTEGER , INTENT(OUT) :: hdferr
+ TYPE(C_PTR) , OPTIONAL :: new_vol_info
+!*****
+
+ TYPE(C_PTR) :: new_vol_info_default
+
+ INTERFACE
+ INTEGER FUNCTION h5pset_vol(plist_id, new_vol_id, new_vol_info) BIND(C, NAME='H5Pset_vol')
+ IMPORT :: HID_T, C_PTR
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: plist_id
+ INTEGER(HID_T), INTENT(IN), VALUE :: new_vol_id
+ TYPE(C_PTR) , INTENT(IN), VALUE :: new_vol_info
+ END FUNCTION h5pset_vol
+ END INTERFACE
+
+ new_vol_info_default = C_NULL_PTR
+ IF(PRESENT(new_vol_info)) new_vol_info_default=new_vol_info
+
+ hdferr = INT(h5pset_vol(plist_id, new_vol_id, new_vol_info_default))
+
+ END SUBROUTINE h5pset_vol_f
+
+!****s* H5P/H5Pget_vol_id_f
+!
+! NAME
+! H5Pget_vol_id_f
+!
+! PURPOSE
+! Get the file VOL connector (VOL_ID) for a file access
+! property list (PLIST_ID)
+! INPUTS
+! plist_id - access property list identifier.
+!
+! OUTPUTS
+! vol_id - VOL connector id.
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! AUTHOR
+! M.S. Breitenfeld
+! May 2019
+!
+! Fortran Interface:
+ SUBROUTINE h5pget_vol_id_f(plist_id, vol_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: plist_id
+ INTEGER(HID_T) , INTENT(OUT) :: vol_id
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+
+ INTERFACE
+ INTEGER FUNCTION h5pget_vol_id(plist_id, vol_id) BIND(C, NAME='H5Pget_vol_id')
+ IMPORT :: HID_T, C_PTR
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: plist_id
+ INTEGER(HID_T), INTENT(OUT) :: vol_id
+ END FUNCTION h5pget_vol_id
+ END INTERFACE
+
+ hdferr = INT(h5pget_vol_id(plist_id, vol_id))
+
+ END SUBROUTINE h5pget_vol_id_f
+
END MODULE H5P
diff --git a/fortran/src/H5Sf.c b/fortran/src/H5Sf.c
index 2eae0d9..1031914 100644
--- a/fortran/src/H5Sf.c
+++ b/fortran/src/H5Sf.c
@@ -994,8 +994,6 @@ done:
return ret_value;
}
-
-#ifdef NEW_HYPERSLAB_API
/****if* H5Sf/h5scombine_hyperslab_c
* NAME
* h5scombine_hyperslab_c
@@ -1119,11 +1117,11 @@ h5scombine_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_
ret_value = 0;
return ret_value;
}
-/****if* H5Sf/h5sselect_select_c
+/****if* H5Sf/h5smodify_select_c
* NAME
- * h5sselect_select_c
+ * h5smodify_select_c
* PURPOSE
- * Call H5Sselect_ select
+ * Call H5Smodify_select
* INPUTS
* space1_id - identifier of the first dataspace to modify
* operator - defines how the new selection is combined
@@ -1139,7 +1137,7 @@ h5scombine_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_
*/
int_f
-h5sselect_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id)
+h5smodify_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id)
/******/
{
int ret_value = -1;
@@ -1151,11 +1149,11 @@ h5sselect_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id)
c_space1_id = (hid_t)*space1_id;
c_space2_id = (hid_t)*space2_id;
- if( H5Sselect_select(c_space1_id, c_op, c_space2_id)< 0) return ret_value;
+ if( H5Smodify_select(c_space1_id, c_op, c_space2_id)< 0) return ret_value;
ret_value = 0;
return ret_value;
}
-#endif /*NEW_HYPERSLAB_API*/
+
/****if* H5Sf/h5sget_select_type_c
* NAME
* h5sget_select_type_c
@@ -1310,7 +1308,7 @@ h5sdecode_c ( _fcd buf, hid_t_f *obj_id )
*/
int_f
-h5sencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc )
+h5sencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc, hid_t_f *fapl_id )
/******/
{
int ret_value = -1;
@@ -1323,7 +1321,7 @@ h5sencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc )
if (*nalloc == 0) {
- if(H5Sencode((hid_t)*obj_id, c_buf, &c_size) < 0)
+ if(H5Sencode2((hid_t)*obj_id, c_buf, &c_size, (hid_t)*fapl_id) < 0)
return ret_value;
*nalloc = (size_t_f)c_size;
@@ -1341,7 +1339,7 @@ h5sencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc )
/*
* Call H5Sencode function.
*/
- if(H5Sencode((hid_t)*obj_id, c_buf, &c_size) < 0){
+ if(H5Sencode2((hid_t)*obj_id, c_buf, &c_size, (hid_t)*fapl_id) < 0){
return ret_value;
}
diff --git a/fortran/src/H5Sff.F90 b/fortran/src/H5Sff.F90
index 3434fba..e6f8e4c 100644
--- a/fortran/src/H5Sff.F90
+++ b/fortran/src/H5Sff.F90
@@ -1506,7 +1506,7 @@ CONTAINS
! !$!****s* H5S/
! !$!
! !$! NAME
-! !$! h5sselect_select_f
+! !$! h5smodify_select_f
! !$!
! !$! PURPOSE
! !$! Refine a hyperslab selection with an operation
@@ -1543,7 +1543,7 @@ CONTAINS
! !$!
! ! SOURCE
-! SUBROUTINE h5sselect_select_f(space1_id, operator, space2_id, &
+! SUBROUTINE h5smodify_select_f(space1_id, operator, space2_id, &
! hdferr)
! IMPLICIT NONE
! INTEGER(HID_T), INTENT(INOUT) :: space1_id ! Dataspace identifier to
@@ -1563,22 +1563,22 @@ CONTAINS
! INTEGER, INTENT(OUT) :: hdferr ! Error code
! INTERFACE
-! INTEGER FUNCTION h5sselect_select_c(space1_id, operator, &
+! INTEGER FUNCTION h5smodify_select_c(space1_id, operator, &
! space2_id)
! USE H5GLOBAL
! !DEC$IF DEFINED(HDF5F90_WINDOWS)
-! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SSELECT_SELECT_C'::h5sselect_select_c
+! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SMODIFY_SELECT_C'::h5smodify_select_c
! !DEC$ENDIF
! INTEGER(HID_T), INTENT(INOUT) :: space1_id
! INTEGER(HID_T), INTENT(IN) :: space2_id
! INTEGER, INTENT(IN) :: operator
-! END FUNCTION h5sselect_select_c
+! END FUNCTION h5smodify_select_c
! END INTERFACE
-! hdferr = h5sselect_select_c(space1_id, operator, space2_id)
+! hdferr = h5smodify_select_c(space1_id, operator, space2_id)
! return
-! END SUBROUTINE h5sselect_select_f
+! END SUBROUTINE h5smodify_select_f
!
!****s* H5S/h5sget_select_type_f
@@ -1683,25 +1683,32 @@ CONTAINS
! M. Scot Breitenfeld
! March 26, 2008
! SOURCE
- SUBROUTINE h5sencode_f(obj_id, buf, nalloc, hdferr)
+ SUBROUTINE h5sencode_f(obj_id, buf, nalloc, hdferr, fapl_id)
IMPLICIT NONE
INTEGER(HID_T), INTENT(IN) :: obj_id
CHARACTER(LEN=*), INTENT(OUT) :: buf
INTEGER(SIZE_T), INTENT(INOUT) :: nalloc
INTEGER, INTENT(OUT) :: hdferr
+ INTEGER(HID_T), OPTIONAL, INTENT(IN) :: fapl_id ! File access property list
!*****
+ INTEGER(HID_T) :: fapl_id_default
INTERFACE
- INTEGER FUNCTION h5sencode_c(buf, obj_id, nalloc) BIND(C,NAME='h5sencode_c')
+ INTEGER FUNCTION h5sencode_c(buf, obj_id, nalloc, fapl_id_default) BIND(C,NAME='h5sencode_c')
IMPORT :: C_CHAR
IMPORT :: HID_T, SIZE_T
INTEGER(HID_T), INTENT(IN) :: obj_id
CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(OUT) :: buf
INTEGER(SIZE_T), INTENT(INOUT) :: nalloc
+ INTEGER(HID_T) :: fapl_id_default
END FUNCTION h5sencode_c
END INTERFACE
- hdferr = h5sencode_c(buf, obj_id, nalloc)
+ fapl_id_default = H5P_DEFAULT_F
+
+ IF(PRESENT(fapl_id)) fapl_id_default = fapl_id
+
+ hdferr = h5sencode_c(buf, obj_id, nalloc, fapl_id_default)
END SUBROUTINE h5sencode_f
diff --git a/fortran/src/H5VLff.F90 b/fortran/src/H5VLff.F90
new file mode 100644
index 0000000..e21f38f
--- /dev/null
+++ b/fortran/src/H5VLff.F90
@@ -0,0 +1,315 @@
+!****h* ROBODoc/H5VL
+!
+! NAME
+! MODULE H5VL
+!
+! PURPOSE
+! This file contains Fortran interfaces for H5VL (VOL) functions.
+!
+! COPYRIGHT
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by The HDF Group. *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the COPYING file, which can be found at the root of the source code *
+! distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+! If you do not have access to either file, you may request a copy from *
+! help@hdfgroup.org. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+!
+! NOTES
+! _____ __ __ _____ ____ _____ _______ _ _ _______
+! |_ _| \/ | __ \ / __ \| __ \__ __|/\ | \ | |__ __|
+! **** | | | \ / | |__) | | | | |__) | | | / \ | \| | | | ****
+! **** | | | |\/| | ___/| | | | _ / | | / /\ \ | . ` | | | ****
+! **** _| |_| | | | | | |__| | | \ \ | |/ ____ \| |\ | | | ****
+! |_____|_| |_|_| \____/|_| \_\ |_/_/ \_\_| \_| |_|
+!
+! If you add a new H5VL function you must add the function name to the
+! Windows dll file 'hdf5_fortrandll.def.in' in the fortran/src directory.
+! This is needed for Windows based operating systems.
+!
+!*****
+
+MODULE H5VL
+
+ USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_PTR, C_FUNPTR, C_CHAR, C_INT64_T, C_INT
+ USE H5GLOBAL
+ USE H5fortkit
+
+ IMPLICIT NONE
+
+CONTAINS
+
+! H5VLregister_connector
+
+!
+!****s* H5VL/H5VLregister_connector_by_name_f
+!
+! NAME
+! H5VLregister_connector_by_name_f
+!
+! PURPOSE
+! Registers a new VOL connector as a member of the virtual object
+! layer class by name.
+!
+! INPUTS
+! name - Connector name
+! OUTPUTS
+! vol_id - VOL id
+! hdferr - Returns 0 if successful and -1 if fails
+! SOURCE
+
+ SUBROUTINE H5VLregister_connector_by_name_f(name, vol_id, hdferr, vipl_id)
+ IMPLICIT NONE
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER(HID_T), INTENT(OUT) :: vol_id
+ INTEGER, INTENT(OUT) :: hdferr
+ INTEGER(HID_T), OPTIONAL, INTENT(IN) :: vipl_id
+!*****
+ CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name
+ INTEGER(HID_T) :: vipl_id_default
+
+ INTERFACE
+ INTEGER(HID_T) FUNCTION H5VLregister_connector_by_name(name, vipl_id) &
+ BIND(C,NAME='H5VLregister_connector_by_name')
+ IMPORT :: C_CHAR
+ IMPORT :: HID_T
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name
+ INTEGER(HID_T), INTENT(IN), VALUE :: vipl_id
+ END FUNCTION H5VLregister_connector_by_name
+ END INTERFACE
+
+ vipl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(vipl_id)) vipl_id_default = vipl_id
+
+ c_name = TRIM(name)//C_NULL_CHAR
+ vol_id = H5VLregister_connector_by_name(c_name, vipl_id_default)
+
+ hdferr = 0
+ IF(vol_id.LT.0) hdferr = H5I_INVALID_HID_F
+
+ END SUBROUTINE H5VLregister_connector_by_name_f
+
+ SUBROUTINE H5VLregister_connector_by_value_f(connector_value, vol_id, hdferr, vipl_id)
+ IMPLICIT NONE
+ INTEGER, INTENT(IN) :: connector_value
+ INTEGER(HID_T), INTENT(OUT) :: vol_id
+ INTEGER, INTENT(OUT) :: hdferr
+ INTEGER(HID_T), OPTIONAL, INTENT(IN) :: vipl_id
+!*****
+ INTEGER(HID_T) :: vipl_id_default
+
+ INTERFACE
+ INTEGER(HID_T) FUNCTION H5VLregister_connector_by_value(connector_value, vipl_id) &
+ BIND(C,NAME='H5VLregister_connector_by_value')
+ IMPORT :: HID_T
+ IMPORT :: C_INT
+ INTEGER(C_INT), VALUE :: connector_value
+ INTEGER(HID_T), INTENT(IN), VALUE :: vipl_id
+ END FUNCTION H5VLregister_connector_by_value
+ END INTERFACE
+
+ vipl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(vipl_id)) vipl_id_default = vipl_id
+
+ vol_id = H5VLregister_connector_by_value(INT(connector_value,C_INT), vipl_id_default)
+
+ hdferr = 0
+ IF(vol_id.LT.0) hdferr = H5I_INVALID_HID_F
+
+ END SUBROUTINE H5VLregister_connector_by_value_f
+
+!
+!****s* H5VL/H5VLis_connector_registered_f
+!
+! NAME
+! H5VLis_connector_registered_f
+!
+! PURPOSE
+! Tests whether a VOL class has been registered or not.
+!
+! INPUTS
+! name - Connector name
+! OUTPUTS
+! registered - state of VOL class registration
+! hdferr - Returns 0 if successful and -1 if fails
+! SOURCE
+
+ SUBROUTINE H5VLis_connector_registered_f(name, registered, hdferr)
+ IMPLICIT NONE
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ LOGICAL, INTENT(OUT) :: registered
+ INTEGER, INTENT(OUT) :: hdferr
+!*****
+ CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name
+ INTEGER(C_INT) :: registered_c
+
+ INTERFACE
+ INTEGER(C_INT) FUNCTION H5VLis_connector_registered(name) BIND(C,NAME='H5VLis_connector_registered')
+ IMPORT :: C_CHAR
+ IMPORT :: C_INT
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name
+ END FUNCTION H5VLis_connector_registered
+ END INTERFACE
+
+ c_name = TRIM(name)//C_NULL_CHAR
+ registered_c = H5VLis_connector_registered(c_name)
+
+ hdferr = 0
+ registered = .FALSE.
+ IF(registered_c .GT. 0) registered = .TRUE.
+ IF(registered_c .LT. 0) hdferr = INT(registered_c)
+
+ END SUBROUTINE H5VLis_connector_registered_f
+
+!
+!****s* H5VL/H5VLis_connector_registered_f
+!
+! NAME
+! H5VLis_connector_registered_f
+!
+! PURPOSE
+! Retrieves the ID for a registered VOL connector.
+!
+! INPUTS
+! name - Connector name
+! OUTPUTS
+! vol_id - Connector id
+! hdferr - Returns 0 if successful and -1 if fails
+! SOURCE
+
+ SUBROUTINE H5VLget_connector_id_f(name, vol_id, hdferr)
+ IMPLICIT NONE
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER(HID_T), INTENT(OUT) :: vol_id
+ INTEGER, INTENT(OUT) :: hdferr
+!*****
+ CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name
+
+ INTERFACE
+ INTEGER(HID_T) FUNCTION H5VLget_connector_id(name) BIND(C,NAME='H5VLget_connector_id')
+ IMPORT :: C_CHAR
+ IMPORT :: HID_T
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name
+ END FUNCTION H5VLget_connector_id
+ END INTERFACE
+
+ c_name = TRIM(name)//C_NULL_CHAR
+ vol_id = H5VLget_connector_id(c_name)
+
+ IF(vol_id.LT.0)THEN
+ hdferr = -1
+ vol_id = H5I_INVALID_HID_F
+ ENDIF
+
+ END SUBROUTINE H5VLget_connector_id_f
+
+ SUBROUTINE H5VLget_connector_name_f(obj_id, name, hdferr, name_len)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: obj_id
+ CHARACTER(LEN=*), INTENT(OUT) :: name
+ INTEGER, INTENT(OUT) :: hdferr
+ INTEGER(SIZE_T), OPTIONAL :: name_len
+!*****
+ CHARACTER(LEN=1,KIND=C_CHAR), DIMENSION(1:LEN(name)+1), TARGET :: c_name
+ INTEGER(SIZE_T) :: l
+
+ INTERFACE
+ INTEGER(SIZE_T) FUNCTION H5VLget_connector_name(obj_id, name, size) BIND(C,NAME='H5VLget_connector_name')
+ IMPORT :: HID_T, SIZE_T, C_PTR, C_CHAR
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN), VALUE :: obj_id
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(OUT) :: name
+ ! TYPE(C_PTR), value :: name
+ INTEGER(SIZE_T), INTENT(IN), VALUE :: size
+ END FUNCTION H5VLget_connector_name
+ END INTERFACE
+
+ hdferr = 0
+ IF(PRESENT(name_len))THEN
+ c_name(1:1)(1:1) = C_NULL_CHAR
+ name_len = INT(H5VLget_connector_name(obj_id, c_name, 1_SIZE_T), SIZE_T)
+ IF(name_len.LT.0) hdferr = H5I_INVALID_HID_F
+ ELSE
+ l = INT(LEN(name)+1,SIZE_T)
+ IF(INT(H5VLget_connector_name(obj_id, c_name, l), SIZE_T).LT.0)THEN
+ hdferr = H5I_INVALID_HID_F
+ ELSE
+ CALL HD5c2fstring(name,c_name,LEN(name))
+ ENDIF
+ ENDIF
+
+ END SUBROUTINE H5VLget_connector_name_f
+
+!
+!
+!****s* H5VL/H5VLclose_f
+!
+! NAME
+! H5VLclose_f
+!
+! PURPOSE
+! Closes a VOL connector ID.
+!
+! INPUTS
+! vol_id - A valid identifier of the connectory to unregister.
+!
+! OUTPUTS
+! hdferr - Returns 0 if successful and -1 if fails
+! SOURCE
+
+ SUBROUTINE H5VLclose_f(vol_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: vol_id
+ INTEGER, INTENT(OUT) :: hdferr
+!*****
+
+ INTERFACE
+ INTEGER FUNCTION H5VLclose(vol_id) BIND(C, NAME='H5VLclose')
+ IMPORT :: HID_T
+ INTEGER(HID_T), INTENT(IN), VALUE :: vol_id
+ END FUNCTION H5VLclose
+ END INTERFACE
+
+ hdferr = INT(H5VLclose(vol_id))
+
+ END SUBROUTINE H5VLclose_f
+
+!
+!****s* H5VL/H5VLunregister_connector_f
+!
+! NAME
+! H5VLunregister_connector_f
+!
+! PURPOSE
+! Removes a VOL connector ID from the library.
+!
+! INPUTS
+! plugin_id - A valid identifier of the connector to unregister.
+!
+! OUTPUTS
+! hdferr - Returns 0 if successful and -1 if fails
+! SOURCE
+
+ SUBROUTINE H5VLunregister_connector_f(plugin_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: plugin_id
+ INTEGER, INTENT(OUT) :: hdferr
+!*****
+
+ INTERFACE
+ INTEGER FUNCTION H5VLunregister_connector(plugin_id) BIND(C, NAME='H5VLunregister_connector')
+ IMPORT :: HID_T
+ INTEGER(HID_T), INTENT(IN), VALUE :: plugin_id
+ END FUNCTION H5VLunregister_connector
+ END INTERFACE
+
+ hdferr = INT(H5VLunregister_connector(plugin_id))
+
+ END SUBROUTINE H5VLunregister_connector_f
+
+END MODULE H5VL
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index 69ba8b3..2d1c6e7 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -498,6 +498,16 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
h5i_flags[4] = (int_f)H5I_DATASET;
h5i_flags[5] = (int_f)H5I_ATTR;
h5i_flags[6] = (int_f)H5I_BADID;
+ h5i_flags[7] = (int_f)H5I_UNINIT;
+ h5i_flags[8] = (int_f)H5I_VFL;
+ h5i_flags[9] = (int_f)H5I_VOL;
+ h5i_flags[10] = (int_f)H5I_GENPROP_CLS;
+ h5i_flags[11] = (int_f)H5I_GENPROP_LST;
+ h5i_flags[12] = (int_f)H5I_ERROR_CLASS;
+ h5i_flags[13] = (int_f)H5I_ERROR_MSG;
+ h5i_flags[14] = (int_f)H5I_ERROR_STACK;
+ h5i_flags[15] = (int_f)H5I_NTYPES;
+ h5i_flags[16] = (int_f)H5I_INVALID_HID;
/*
* H5L flags
*/
@@ -632,7 +642,6 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
h5s_flags[15] = (int_f)H5S_SEL_POINTS;
h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS;
h5s_flags[17] = (int_f)H5S_SEL_ALL;
-
/*
* H5T flags
*/
@@ -671,7 +680,6 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
h5t_flags[32] = (int_f)H5T_ARRAY;
h5t_flags[33] = (int_f)H5T_DIR_ASCEND;
h5t_flags[34] = (int_f)H5T_DIR_DESCEND;
-
/*
* H5Z flags
*/
@@ -695,10 +703,6 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
h5z_flags[17] = (int_f)H5Z_SO_FLOAT_ESCALE;
h5z_flags[18] = (int_f)H5Z_SO_INT;
h5z_flags[19] = (int_f)H5Z_SO_INT_MINBITS_DEFAULT;
-/*
- * H5A flags
- */
-
/*
* H5 Generic flags introduced in version 1.8
diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90
index 84529e4..443be79 100644
--- a/fortran/src/H5_ff.F90
+++ b/fortran/src/H5_ff.F90
@@ -88,7 +88,7 @@ MODULE H5LIB
!
! H5I flags declaration
!
- INTEGER, PARAMETER :: H5I_FLAGS_LEN = 7
+ INTEGER, PARAMETER :: H5I_FLAGS_LEN = 17
INTEGER, DIMENSION(1:H5I_FLAGS_LEN) :: H5I_flags
!
! H5L flags declaration
@@ -129,6 +129,7 @@ MODULE H5LIB
!
INTEGER, PARAMETER :: H5T_FLAGS_LEN = 35
INTEGER, DIMENSION(1:H5T_FLAGS_LEN) :: H5T_flags
+
!
! H5Z flags declaration
!
@@ -443,13 +444,23 @@ CONTAINS
!
! H5I flags declaration
!
- H5I_FILE_F = H5I_flags(1)
- H5I_GROUP_F = H5I_flags(2)
- H5I_DATATYPE_F = H5I_flags(3)
- H5I_DATASPACE_F = H5I_flags(4)
- H5I_DATASET_F = H5I_flags(5)
- H5I_ATTR_F = H5I_flags(6)
- H5I_BADID_F = H5I_flags(7)
+ H5I_FILE_F = H5I_flags(1)
+ H5I_GROUP_F = H5I_flags(2)
+ H5I_DATATYPE_F = H5I_flags(3)
+ H5I_DATASPACE_F = H5I_flags(4)
+ H5I_DATASET_F = H5I_flags(5)
+ H5I_ATTR_F = H5I_flags(6)
+ H5I_BADID_F = H5I_flags(7)
+ H5I_UNINIT_F = H5I_flags(8)
+ H5I_VFL_F = H5I_flags(9)
+ H5I_VOL_F = H5I_flags(10)
+ H5I_GENPROP_CLS_F = H5I_flags(11)
+ H5I_GENPROP_LST_F = H5I_flags(12)
+ H5I_ERROR_CLASS_F = H5I_flags(13)
+ H5I_ERROR_MSG_F = H5I_flags(14)
+ H5I_ERROR_STACK_F = H5I_flags(15)
+ H5I_NTYPES_F = H5I_flags(16)
+ H5I_INVALID_HID_F = H5I_flags(17)
!
! H5L flags
!
diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90
index b705cc1..02e3bc3 100644
--- a/fortran/src/H5f90global.F90
+++ b/fortran/src/H5f90global.F90
@@ -435,15 +435,36 @@ MODULE H5GLOBAL
!DEC$ATTRIBUTES DLLEXPORT :: H5I_DATASET_F
!DEC$ATTRIBUTES DLLEXPORT :: H5I_ATTR_F
!DEC$ATTRIBUTES DLLEXPORT :: H5I_BADID_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_UNINIT_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_VFL_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_VOL_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_GENPROP_CLS_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_GENPROP_LST_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_ERROR_CLASS_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_ERROR_MSG_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_ERROR_STACK_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_NTYPES_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5I_INVALID_HID_F
!DEC$endif
- INTEGER :: H5I_FILE_F
- INTEGER :: H5I_GROUP_F
- INTEGER :: H5I_DATATYPE_F
- INTEGER :: H5I_DATASPACE_F
- INTEGER :: H5I_DATASET_F
- INTEGER :: H5I_ATTR_F
- INTEGER :: H5I_BADID_F
+ INTEGER :: H5I_FILE_F
+ INTEGER :: H5I_GROUP_F
+ INTEGER :: H5I_DATATYPE_F
+ INTEGER :: H5I_DATASPACE_F
+ INTEGER :: H5I_DATASET_F
+ INTEGER :: H5I_ATTR_F
+ INTEGER :: H5I_BADID_F
+ INTEGER :: H5I_UNINIT_F
+ INTEGER :: H5I_VFL_F
+ INTEGER :: H5I_VOL_F
+ INTEGER :: H5I_GENPROP_CLS_F
+ INTEGER :: H5I_GENPROP_LST_F
+ INTEGER :: H5I_ERROR_CLASS_F
+ INTEGER :: H5I_ERROR_MSG_F
+ INTEGER :: H5I_ERROR_STACK_F
+ INTEGER :: H5I_NTYPES_F
+ INTEGER :: H5I_INVALID_HID_F
+
!
! H5L flags declaration
!
diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h
index 56b7f22..5faf4b4 100644
--- a/fortran/src/H5f90proto.h
+++ b/fortran/src/H5f90proto.h
@@ -91,6 +91,7 @@ H5_FCDLL int_f h5fget_file_image_c(hid_t_f *file_id, void *buf_ptr, size_t_f *bu
H5_FCDLL int_f h5fflush_c(hid_t_f *obj_id, int_f *scope);
H5_FCDLL int_f h5fget_name_c(hid_t_f *obj_id, size_t_f *size, _fcd buf, size_t_f *buflen);
H5_FCDLL int_f h5fget_filesize_c(hid_t_f *file_id, hsize_t_f *size);
+H5_FCDLL int_f h5fget_fileno_c(hid_t_f *file_id, int_f *fileno);
/*
* Functions from H5Sf.c
@@ -122,9 +123,9 @@ H5_FCDLL int_f h5sget_select_type_c( hid_t_f *space_id , int_f *op);
H5_FCDLL int_f h5sselect_elements_c( hid_t_f *space_id , int_f *op, size_t_f *nelements, hsize_t_f *coord);
H5_FCDLL int_f h5scombine_hyperslab_c( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id);
H5_FCDLL int_f h5scombine_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id);
-H5_FCDLL int_f h5sselect_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id);
+H5_FCDLL int_f h5smodify_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id);
H5_FCDLL int_f h5sdecode_c( _fcd buf, hid_t_f *obj_id );
-H5_FCDLL int_f h5sencode_c(_fcd buf, hid_t_f *obj_id, size_t_f *nalloc );
+H5_FCDLL int_f h5sencode_c(_fcd buf, hid_t_f *obj_id, size_t_f *nalloc, hid_t_f *fapl_id );
H5_FCDLL int_f h5sextent_equal_c( hid_t_f * space1_id, hid_t_f *space2_id, hid_t_f *c_equal);
/*
diff --git a/fortran/src/HDF5.F90 b/fortran/src/HDF5.F90
index 0370224..fe38b7d 100644
--- a/fortran/src/HDF5.F90
+++ b/fortran/src/HDF5.F90
@@ -38,6 +38,7 @@ MODULE HDF5
USE H5O
USE H5P
USE H5R
+ USE H5VL
USE H5Z
USE H5_gen
USE H5LIB
diff --git a/fortran/src/Makefile.am b/fortran/src/Makefile.am
index 666f6cb..4009439 100644
--- a/fortran/src/Makefile.am
+++ b/fortran/src/Makefile.am
@@ -44,7 +44,7 @@ endif
libhdf5_fortran_la_SOURCES=H5f90global.F90 \
H5fortran_types.F90 H5_ff.F90 H5Aff.F90 H5Dff.F90 H5Eff.F90 \
H5Fff.F90 H5Gff.F90 H5Iff.F90 H5Lff.F90 H5Off.F90 H5Pff.F90 H5Rff.F90 H5Sff.F90 \
- H5Tff.F90 H5Zff.F90 H5_gen.F90 H5fortkit.F90 \
+ H5Tff.F90 H5VLff.F90 H5Zff.F90 H5_gen.F90 H5fortkit.F90 \
H5f90kit.c H5_f.c H5Af.c H5Df.c H5Ef.c H5Ff.c H5Gf.c \
H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c HDF5.F90
@@ -155,6 +155,7 @@ H5Pff.lo: $(srcdir)/H5Pff.F90 H5f90global.lo H5fortkit.lo
H5Rff.lo: $(srcdir)/H5Rff.F90 H5f90global.lo
H5Sff.lo: $(srcdir)/H5Sff.F90 H5f90global.lo
H5Tff.lo: $(srcdir)/H5Tff.F90 H5f90global.lo
+H5VLff.lo: $(srcdir)/H5VLff.F90 H5f90global.lo
H5Zff.lo: $(srcdir)/H5Zff.F90 H5f90global.lo
H5_gen.lo: H5_gen.F90 H5f90global.lo H5Aff.lo H5Dff.lo H5Pff.lo
HDF5.lo: $(srcdir)/HDF5.F90 H5f90global.lo H5_ff.lo H5Aff.lo \
diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in
index a99efad..e31a582 100644
--- a/fortran/src/hdf5_fortrandll.def.in
+++ b/fortran/src/hdf5_fortrandll.def.in
@@ -98,6 +98,7 @@ H5F_mp_H5FGET_ACCESS_PLIST_F
H5F_mp_H5FIS_ACCESSIBLE_F
H5F_mp_H5FIS_HDF5_F
H5F_mp_H5FGET_NAME_F
+H5F_mp_H5FGET_FILENO_F
H5F_mp_H5FGET_FILESIZE_F
H5F_mp_H5FGET_FILE_IMAGE_F
H5F_mp_H5FGET_DSET_NO_ATTRS_HINT_F
@@ -334,6 +335,8 @@ H5P_mp_H5PGET_VIRTUAL_FILENAME_F
H5P_mp_H5PGET_VIRTUAL_DSETNAME_F
H5P_mp_H5PGET_DSET_NO_ATTRS_HINT_F
H5P_mp_H5PSET_DSET_NO_ATTRS_HINT_F
+H5P_mp_H5PSET_VOL_F
+H5P_mp_H5PGET_VOL_ID_F
; Parallel
@H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F
@H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F
@@ -451,6 +454,14 @@ H5T_mp_H5TGET_NATIVE_TYPE_F
H5T_mp_H5TCONVERT_F
H5T_mp_H5TENUM_INSERT_F90
H5T_mp_H5TENUM_INSERT_F03
+; H5VL
+H5VL_mp_H5VLREGISTER_CONNECTOR_BY_NAME_F
+H5VL_mp_H5VLREGISTER_CONNECTOR_BY_VALUE_F
+H5VL_mp_H5VLIS_CONNECTOR_REGISTERED_F
+H5VL_mp_H5VLGET_CONNECTOR_ID_F
+H5VL_mp_H5VLGET_CONNECTOR_NAME_F
+H5VL_mp_H5VLCLOSE_F
+H5VL_mp_H5VLUNREGISTER_CONNECTOR_F
; H5Z
H5Z_mp_H5ZUNREGISTER_F
H5Z_mp_H5ZFILTER_AVAIL_F
diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt
index b862fcd..9c68860 100644
--- a/fortran/test/CMakeLists.txt
+++ b/fortran/test/CMakeLists.txt
@@ -7,7 +7,7 @@ project (HDF5_FORTRAN_TESTS C Fortran)
#-----------------------------------------------------------------------------
add_executable (H5_test_buildiface ${HDF5_F90_SRC_DIR}/test/H5_test_buildiface.F90)
-target_include_directories(H5_test_buildiface
+target_include_directories (H5_test_buildiface
PRIVATE
${HDF5_BINARY_DIR} ${HDF5_F90_BINARY_DIR}
)
@@ -31,35 +31,37 @@ set_target_properties (H5_test_buildiface PROPERTIES
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}
)
-if (BUILD_SHARED_LIBS)
+if (NOT BUILD_SHARED_LIBS)
+ file (MAKE_DIRECTORY "${HDF5_FORTRAN_TESTS_BINARY_DIR}/static")
+ set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
+else ()
file (MAKE_DIRECTORY "${HDF5_FORTRAN_TESTS_BINARY_DIR}/shared")
set (MODSH_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/shared/${HDF_CFG_BUILD_TYPE})
endif ()
-file (MAKE_DIRECTORY "${HDF5_FORTRAN_TESTS_BINARY_DIR}/static")
-set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
#-----------------------------------------------------------------------------
# Add Test Lib
#-----------------------------------------------------------------------------
-add_library (${HDF5_F90_C_TEST_LIB_TARGET} STATIC t.c)
-set_source_files_properties (t.c PROPERTIES LANGUAGE C)
-target_include_directories(${HDF5_F90_C_TEST_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-TARGET_C_PROPERTIES (${HDF5_F90_C_TEST_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_F90_C_TEST_LIB_TARGET} PRIVATE
- ${HDF5_F90_C_LIB_TARGET}
- ${HDF5_TEST_LIB_TARGET}
-)
-H5_SET_LIB_OPTIONS (${HDF5_F90_C_TEST_LIB_TARGET} ${HDF5_F90_C_TEST_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_F90_C_TEST_LIB_TARGET} PROPERTIES
- FOLDER libraries/test/fortran
- LINKER_LANGUAGE C
-)
-if (BUILD_SHARED_LIBS)
+if (NOT BUILD_SHARED_LIBS)
+ add_library (${HDF5_F90_C_TEST_LIB_TARGET} STATIC t.c)
+ set_source_files_properties (t.c PROPERTIES LANGUAGE C)
+ target_include_directories (${HDF5_F90_C_TEST_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ TARGET_C_PROPERTIES (${HDF5_F90_C_TEST_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_F90_C_TEST_LIB_TARGET}
+ PRIVATE ${HDF5_F90_C_LIB_TARGET}
+ PUBLIC ${HDF5_TEST_LIB_TARGET}
+ )
+ H5_SET_LIB_OPTIONS (${HDF5_F90_C_TEST_LIB_TARGET} ${HDF5_F90_C_TEST_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_F90_C_TEST_LIB_TARGET} PROPERTIES
+ FOLDER libraries/test/fortran
+ LINKER_LANGUAGE C
+ )
+else ()
add_library (${HDF5_F90_C_TEST_LIBSH_TARGET} SHARED t.c)
- target_include_directories(${HDF5_F90_C_TEST_LIBSH_TARGET}
+ target_include_directories (${HDF5_F90_C_TEST_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -67,9 +69,9 @@ if (BUILD_SHARED_LIBS)
PUBLIC "H5_BUILT_AS_DYNAMIC_LIB"
)
TARGET_C_PROPERTIES (${HDF5_F90_C_TEST_LIBSH_TARGET} SHARED)
- target_link_libraries (${HDF5_F90_C_TEST_LIBSH_TARGET} PRIVATE
- ${HDF5_F90_C_LIBSH_TARGET}
- ${HDF5_TEST_LIBSH_TARGET}
+ target_link_libraries (${HDF5_F90_C_TEST_LIBSH_TARGET}
+ PRIVATE ${HDF5_F90_C_LIBSH_TARGET}
+ PUBLIC ${HDF5_TEST_LIBSH_TARGET}
)
H5_SET_LIB_OPTIONS (${HDF5_F90_C_TEST_LIBSH_TARGET} ${HDF5_F90_C_TEST_LIB_NAME} SHARED "F")
set_target_properties (${HDF5_F90_C_TEST_LIBSH_TARGET} PROPERTIES
@@ -78,19 +80,19 @@ if (BUILD_SHARED_LIBS)
)
endif ()
-add_custom_command (
- OUTPUT ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
- COMMAND $<TARGET_FILE:H5_test_buildiface>
- WORKING_DIRECTORY ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static
- DEPENDS H5_test_buildiface
- COMMENT "Generating the tf_gen.F90 file"
-)
-add_custom_target (H5testgen ALL
- DEPENDS ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
-)
-set_source_files_properties (${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90 PROPERTIES GENERATED TRUE)
-
-if (BUILD_SHARED_LIBS)
+if (NOT BUILD_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
+ COMMAND $<TARGET_FILE:H5_test_buildiface>
+ WORKING_DIRECTORY ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static
+ DEPENDS H5_test_buildiface
+ COMMENT "Generating the tf_gen.F90 file"
+ )
+ add_custom_target (H5testgen ALL
+ DEPENDS ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
+ )
+ set_source_files_properties (${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90 PROPERTIES GENERATED TRUE)
+else ()
add_custom_command (
OUTPUT ${HDF5_FORTRAN_TESTS_BINARY_DIR}/shared/tf_gen.F90
COMMAND $<TARGET_FILE:H5_test_buildiface>
@@ -104,15 +106,16 @@ if (BUILD_SHARED_LIBS)
set_source_files_properties (${HDF5_FORTRAN_TESTS_BINARY_DIR}/shared/tf_gen.F90 PROPERTIES GENERATED TRUE)
endif ()
-set (HDF5_F90_TF_SOURCES
- # generated files
- ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
+if (NOT BUILD_SHARED_LIBS)
+ set (HDF5_F90_TF_SOURCES
+ # generated files
+ ${HDF5_FORTRAN_TESTS_BINARY_DIR}/static/tf_gen.F90
- # normal distribution
- tf.F90
-)
-set_source_files_properties (${HDF5_F90_TF_SOURCES} PROPERTIES LANGUAGE Fortran)
-if (BUILD_SHARED_LIBS)
+ # normal distribution
+ tf.F90
+ )
+ set_source_files_properties (${HDF5_F90_TF_SOURCES} PROPERTIES LANGUAGE Fortran)
+else ()
set (HDF5_F90_TF_SOURCES_SHARED
# generated file
${HDF5_FORTRAN_TESTS_BINARY_DIR}/shared/tf_gen.F90
@@ -123,40 +126,40 @@ if (BUILD_SHARED_LIBS)
set_source_files_properties (${HDF5_F90_TF_SOURCES_SHARED} PROPERTIES LANGUAGE Fortran)
endif ()
-add_library (${HDF5_F90_TEST_LIB_TARGET} STATIC ${HDF5_F90_TF_SOURCES})
-target_include_directories (${HDF5_F90_TEST_LIB_TARGET}
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
- INTERFACE
- "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-target_compile_definitions(${HDF5_F90_TEST_LIB_TARGET}
- PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
-)
-target_link_libraries (${HDF5_F90_TEST_LIB_TARGET}
- PUBLIC
- ${HDF5_F90_C_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
-)
-#set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-#)
-#set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-#)
-if(MSVC)
- set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
-endif()
-set_target_properties (${HDF5_F90_TEST_LIB_TARGET} PROPERTIES
- FOLDER libraries/test/fortran
- LINKER_LANGUAGE Fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-H5_SET_LIB_OPTIONS (${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_TEST_LIB_NAME} STATIC 0)
-add_dependencies(${HDF5_F90_TEST_LIB_TARGET} H5testgen)
-
-if (BUILD_SHARED_LIBS)
+if (NOT BUILD_SHARED_LIBS)
+ add_library (${HDF5_F90_TEST_LIB_TARGET} STATIC ${HDF5_F90_TF_SOURCES})
+ target_include_directories (${HDF5_F90_TEST_LIB_TARGET}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
+ INTERFACE
+ "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ target_compile_definitions(${HDF5_F90_TEST_LIB_TARGET}
+ PRIVATE
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ )
+ target_link_libraries (${HDF5_F90_TEST_LIB_TARGET}
+ PUBLIC
+ ${HDF5_F90_C_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
+ )
+# set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
+# )
+# set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
+# )
+ if(MSVC)
+ set_property(TARGET ${HDF5_F90_TEST_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
+ endif()
+ set_target_properties (${HDF5_F90_TEST_LIB_TARGET} PROPERTIES
+ FOLDER libraries/test/fortran
+ LINKER_LANGUAGE Fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ H5_SET_LIB_OPTIONS (${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_TEST_LIB_NAME} STATIC 0)
+ add_dependencies(${HDF5_F90_TEST_LIB_TARGET} H5testgen)
+else ()
add_library (${HDF5_F90_TEST_LIBSH_TARGET} SHARED ${HDF5_F90_TF_SOURCES_SHARED})
target_include_directories (${HDF5_F90_TEST_LIBSH_TARGET}
PRIVATE
@@ -218,18 +221,10 @@ add_executable (testhdf5_fortran
tH5Z.F90
tHDF5.F90
)
-target_include_directories (testhdf5_fortran
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
-)
target_compile_options(testhdf5_fortran
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
-target_link_libraries (testhdf5_fortran
- PRIVATE
- ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
-)
#set_property(TARGET testhdf5_fortran APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
#)
@@ -239,58 +234,36 @@ target_link_libraries (testhdf5_fortran
if(MSVC)
set_property(TARGET testhdf5_fortran PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
-set_target_properties (testhdf5_fortran PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-add_dependencies (testhdf5_fortran ${HDF5_F90_TEST_LIB_TARGET})
-
-if (BUILD_SHARED_LIBS)
- add_executable (testhdf5_fortran-shared
- fortranlib_test.F90
- tH5A.F90
- tH5D.F90
- tH5E.F90
- tH5F.F90
- tH5G.F90
- tH5I.F90
- tH5P.F90
- tH5R.F90
- tH5S.F90
- tH5Sselect.F90
- tH5T.F90
- tH5VL.F90
- tH5Z.F90
- tHDF5.F90
- )
- target_include_directories (testhdf5_fortran-shared
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (testhdf5_fortran
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
)
- target_compile_options(testhdf5_fortran-shared
+ target_link_libraries (testhdf5_fortran
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (testhdf5_fortran PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ add_dependencies (testhdf5_fortran ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (testhdf5_fortran
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
)
- target_link_libraries (testhdf5_fortran-shared
+ target_link_libraries (testhdf5_fortran
PRIVATE
${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
)
-# set_property(TARGET testhdf5_fortran-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET testhdf5_fortran-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET testhdf5_fortran-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (testhdf5_fortran-shared PROPERTIES
+ set_target_properties (testhdf5_fortran PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- add_dependencies (testhdf5_fortran-shared ${HDF5_F90_TEST_LIBSH_TARGET})
+ add_dependencies (testhdf5_fortran ${HDF5_F90_TEST_LIBSH_TARGET})
endif ()
#-- Adding test for testhdf5_fortran_1_8
@@ -302,18 +275,10 @@ add_executable (testhdf5_fortran_1_8
tH5MISC_1_8.F90
tHDF5_1_8.F90
)
-target_include_directories (testhdf5_fortran_1_8
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
-)
target_compile_options(testhdf5_fortran_1_8
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
-target_link_libraries (testhdf5_fortran_1_8
- PRIVATE
- ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
-)
#set_property(TARGET testhdf5_fortran_1_8 APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
#)
@@ -323,49 +288,36 @@ target_link_libraries (testhdf5_fortran_1_8
if(MSVC)
set_property(TARGET testhdf5_fortran_1_8 PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
-set_target_properties (testhdf5_fortran_1_8 PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-add_dependencies (testhdf5_fortran_1_8 ${HDF5_F90_TEST_LIB_TARGET})
-
-if (BUILD_SHARED_LIBS)
- add_executable (testhdf5_fortran_1_8-shared
- fortranlib_test_1_8.F90
- tH5O.F90
- tH5A_1_8.F90
- tH5G_1_8.F90
- tH5MISC_1_8.F90
- tHDF5_1_8.F90
- )
- target_include_directories (testhdf5_fortran_1_8-shared
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (testhdf5_fortran_1_8
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
)
- target_compile_options(testhdf5_fortran_1_8-shared
+ target_link_libraries (testhdf5_fortran_1_8
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (testhdf5_fortran_1_8 PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
)
- target_link_libraries (testhdf5_fortran_1_8-shared
+ add_dependencies (testhdf5_fortran_1_8 ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (testhdf5_fortran_1_8
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ )
+ target_link_libraries (testhdf5_fortran_1_8
PRIVATE
${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
)
-# set_property(TARGET testhdf5_fortran_1_8-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET testhdf5_fortran_1_8-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET testhdf5_fortran_1_8-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (testhdf5_fortran_1_8-shared PROPERTIES
+ set_target_properties (testhdf5_fortran_1_8 PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- add_dependencies (testhdf5_fortran_1_8-shared ${HDF5_F90_TEST_LIBSH_TARGET})
+ add_dependencies (testhdf5_fortran_1_8 ${HDF5_F90_TEST_LIBSH_TARGET})
endif ()
#-- Adding test for fortranlib_test_F03
@@ -379,18 +331,10 @@ add_executable (fortranlib_test_F03
tH5T_F03.F90
tHDF5_F03.F90
)
-target_include_directories (fortranlib_test_F03
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
-)
target_compile_options(fortranlib_test_F03
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
-target_link_libraries (fortranlib_test_F03
- PRIVATE
- ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
-)
#set_property(TARGET fortranlib_test_F03 APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
#)
@@ -400,67 +344,44 @@ target_link_libraries (fortranlib_test_F03
if(MSVC)
set_property(TARGET fortranlib_test_F03 PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
-set_target_properties (fortranlib_test_F03 PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-add_dependencies (fortranlib_test_F03 ${HDF5_F90_TEST_LIB_TARGET})
-
-if (BUILD_SHARED_LIBS)
- add_executable (fortranlib_test_F03-shared
- fortranlib_test_F03.F90
- tH5E_F03.F90
- tH5F_F03.F90
- tH5L_F03.F90
- tH5O_F03.F90
- tH5P_F03.F90
- tH5T_F03.F90
- tHDF5_F03.F90
- )
- target_include_directories (fortranlib_test_F03-shared
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (fortranlib_test_F03
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static"
)
- target_compile_options(fortranlib_test_F03-shared
+ target_link_libraries (fortranlib_test_F03
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (fortranlib_test_F03 PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ add_dependencies (fortranlib_test_F03 ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (fortranlib_test_F03
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared"
)
- target_link_libraries (fortranlib_test_F03-shared
+ target_link_libraries (fortranlib_test_F03
PRIVATE
${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
)
-# set_property(TARGET fortranlib_test_F03-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET fortranlib_test_F03-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET fortranlib_test_F03-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (fortranlib_test_F03-shared PROPERTIES
+ set_target_properties (fortranlib_test_F03 PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- add_dependencies (fortranlib_test_F03-shared ${HDF5_F90_TEST_LIBSH_TARGET})
+ add_dependencies (fortranlib_test_F03 ${HDF5_F90_TEST_LIBSH_TARGET})
endif ()
#-- Adding test for fflush1
add_executable (fflush1 fflush1.F90)
-target_include_directories (fflush1
- PRIVATE
- ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
target_compile_options(fflush1
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
-target_link_libraries (fflush1
- PRIVATE
- ${HDF5_F90_LIB_TARGET} ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
-)
#set_property(TARGET fflush1 APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
#)
@@ -470,58 +391,44 @@ target_link_libraries (fflush1
if(MSVC)
set_property(TARGET fflush1 PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
-set_target_properties (fflush1 PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-add_dependencies (fflush1 ${HDF5_F90_TEST_LIB_TARGET})
-
-if (BUILD_SHARED_LIBS)
- add_executable (fflush1-shared fflush1.F90)
- target_include_directories (fflush1-shared
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (fflush1
PRIVATE
- ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/static
)
- target_compile_options(fflush1-shared
+ target_link_libraries (fflush1
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_LIB_TARGET} ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (fflush1 PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
)
- target_link_libraries (fflush1-shared
+ add_dependencies (fflush1 ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (fflush1
+ PRIVATE
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ )
+ target_link_libraries (fflush1
PRIVATE
${HDF5_F90_LIBSH_TARGET} ${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
)
-# set_property(TARGET fflush1-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET fflush1-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET fflush1-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (fflush1-shared PROPERTIES
+ set_target_properties (fflush1 PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- add_dependencies (fflush1-shared ${HDF5_F90_TEST_LIBSH_TARGET})
+ add_dependencies (fflush1 ${HDF5_F90_TEST_LIBSH_TARGET})
endif ()
#-- Adding test for fflush2
add_executable (fflush2 fflush2.F90)
-target_include_directories (fflush2
- PRIVATE
- ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
target_compile_options (fflush2
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
-target_link_libraries (fflush2
- PRIVATE
- ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
-)
#set_property(TARGET fflush2 APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
#)
@@ -531,42 +438,83 @@ target_link_libraries (fflush2
if(MSVC)
set_property(TARGET fflush2 PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
-set_target_properties (fflush2 PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-add_dependencies (fflush2 ${HDF5_F90_TEST_LIB_TARGET})
-
-if (BUILD_SHARED_LIBS)
- add_executable (fflush2-shared fflush2.F90)
- target_include_directories (fflush2-shared
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (fflush2
PRIVATE
- ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/static
)
- target_compile_options(fflush2-shared
+ target_link_libraries (fflush2
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (fflush2 PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ add_dependencies (fflush2 ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (fflush2
+ PRIVATE
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- target_link_libraries (fflush2-shared
+ target_link_libraries (fflush2
PRIVATE
${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
)
-# set_property(TARGET fflush2-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET fflush2-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET fflush2-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (fflush2-shared PROPERTIES
+ set_target_properties (fflush2 PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ )
+ add_dependencies (fflush2 ${HDF5_F90_TEST_LIBSH_TARGET})
+endif ()
+
+#-- Adding test for vol_connector
+add_executable (vol_connector vol_connector.F90)
+target_compile_options(vol_connector
+ PRIVATE
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+)
+#set_property(TARGET vol_connector APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
+#)
+#set_property(TARGET vol_connector APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
+#)
+if(MSVC)
+ set_property(TARGET vol_connector PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
+endif()
+if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (vol_connector
+ PRIVATE
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ target_link_libraries (vol_connector
+ PRIVATE
+ ${HDF5_F90_LIB_TARGET} ${HDF5_F90_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (vol_connector PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ add_dependencies (vol_connector ${HDF5_F90_TEST_LIB_TARGET})
+else ()
+ target_include_directories (vol_connector
+ PRIVATE
+ ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ )
+ target_link_libraries (vol_connector
+ PRIVATE
+ ${HDF5_F90_LIBSH_TARGET} ${HDF5_F90_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} $<$<PLATFORM_ID:Windows>:ws2_32.lib>
+ )
+ set_target_properties (vol_connector PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
)
- add_dependencies (fflush2-shared ${HDF5_F90_TEST_LIBSH_TARGET})
+ add_dependencies (vol_connector ${HDF5_F90_TEST_LIBSH_TARGET})
endif ()
include (CMakeTests.cmake)
diff --git a/fortran/test/CMakeTests.cmake b/fortran/test/CMakeTests.cmake
index 2824ef7..20fb7e3 100644
--- a/fortran/test/CMakeTests.cmake
+++ b/fortran/test/CMakeTests.cmake
@@ -15,50 +15,51 @@
### T E S T I N G ###
##############################################################################
##############################################################################
-if (BUILD_SHARED_LIBS)
- file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/fshared")
-endif ()
+
+set (test_CLEANFILES
+ a.h5
+ b.h5
+ c.h5
+ d.h5
+ dsetf_F03.h5
+ enum1.h5
+ extern_1a.raw
+ extern_2a.raw
+ extern_3a.raw
+ extern_4a.raw
+ extren_raw.raw
+ get_info.h5
+ nbit.h5
+ t_array_F03.h5
+ t_bit_F03.h5
+ t_controlchar_F03.h5
+ t_enum_F03.h5
+ t_objref_F03.h5
+ t_opaque_F03.h5
+ t_regref_F03.h5
+ t_string_F03.h5
+ t_vlen_F03.h5
+ t_vlstring_F03.h5
+ t_vlstringrw_F03.h5
+ tarray1.h5
+ tarray2.h5
+ tarray3.h5
+ test_create.h5
+ tget_file_image.h5
+ th5o_ref.h5
+ titerate.h5
+ vds.h5
+ visit.h5
+)
# Remove any output file left over from previous test run
add_test (
NAME FORTRAN_testhdf5-clear-objects
COMMAND ${CMAKE_COMMAND}
-E remove
- a.h5
- b.h5
- c.h5
- d.h5
- dsetf_F03.h5
- enum1.h5
- extern_1a.raw
- extern_2a.raw
- extern_3a.raw
- extern_4a.raw
- extren_raw.raw
- get_info.h5
- nbit.h5
- t_array_F03.h5
- t_bit_F03.h5
- t_controlchar_F03.h5
- t_enum_F03.h5
- t_objref_F03.h5
- t_opaque_F03.h5
- t_regref_F03.h5
- t_string_F03.h5
- t_vlen_F03.h5
- t_vlstring_F03.h5
- t_vlstringrw_F03.h5
- tarray1.h5
- tarray2.h5
- tarray3.h5
- test_create.h5
- tget_file_image.h5
- th5o_ref.h5
- titerate.h5
- vds.h5
- visit.h5
+ ${test_CLEANFILES}
)
-if (NOT "${last_test}" STREQUAL "")
+if (last_test)
set_tests_properties (FORTRAN_testhdf5-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "FORTRAN_testhdf5-clear-objects")
@@ -122,6 +123,24 @@ endif ()
# set_tests_properties (FORTRAN_fortranlib_test_F03 PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s")
set_tests_properties (FORTRAN_fortranlib_test_F03 PROPERTIES DEPENDS FORTRAN_testhdf5_fortran_1_8)
+#-- Adding test for vol_connector
+if (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (NAME FORTRAN_vol_connector COMMAND $<TARGET_FILE:vol_connector>)
+else ()
+ add_test (NAME FORTRAN_vol_connector COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:vol_connector>"
+ -D "TEST_ARGS:STRING="
+ -D "TEST_EXPECT=0"
+ -D "TEST_SKIP_COMPARE=TRUE"
+ -D "TEST_REGEX= 0 error.s."
+ -D "TEST_MATCH= 0 error(s)"
+ -D "TEST_OUTPUT=vol_connector.txt"
+ #-D "TEST_REFERENCE=vol_connector.out"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+endif ()
+
#-- Adding test for fflush1
add_test (NAME FORTRAN_fflush1 COMMAND $<TARGET_FILE:fflush1>)
set_tests_properties (FORTRAN_fflush1 PROPERTIES DEPENDS FORTRAN_testhdf5-clear-objects)
@@ -129,114 +148,3 @@ set_tests_properties (FORTRAN_fflush1 PROPERTIES DEPENDS FORTRAN_testhdf5-clear-
#-- Adding test for fflush2
add_test (NAME FORTRAN_fflush2 COMMAND $<TARGET_FILE:fflush2>)
set_tests_properties (FORTRAN_fflush2 PROPERTIES DEPENDS FORTRAN_fflush1)
-
-if (BUILD_SHARED_LIBS)
- add_test (
- NAME FORTRAN_testhdf5-shared-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- a.h5
- b.h5
- c.h5
- d.h5
- dsetf_F03.h5
- enum1.h5
- extern_1a.raw
- extern_2a.raw
- extern_3a.raw
- extern_4a.raw
- extren_raw.raw
- get_info.h5
- nbit.h5
- t_array_F03.h5
- t_bit_F03.h5
- t_controlchar_F03.h5
- t_enum_F03.h5
- t_objref_F03.h5
- t_opaque_F03.h5
- t_regref_F03.h5
- t_string_F03.h5
- t_vlen_F03.h5
- t_vlstring_F03.h5
- t_vlstringrw_F03.h5
- tarray1.h5
- tarray2.h5
- tarray3.h5
- test_create.h5
- tget_file_image.h5
- th5o_ref.h5
- titerate.h5
- vds.h5
- visit.h5
- WORKING_DIRECTORY
- ${PROJECT_BINARY_DIR}/fshared
- )
- set_tests_properties (FORTRAN_testhdf5-shared-clear-objects PROPERTIES DEPENDS FORTRAN_testhdf5-clear-objects)
-
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME FORTRAN_testhdf5_fortran-shared COMMAND $<TARGET_FILE:testhdf5_fortran-shared>)
- else ()
- add_test (NAME FORTRAN_testhdf5_fortran-shared COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:testhdf5_fortran-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_REGEX= 0 error.s."
- -D "TEST_MATCH= 0 error(s)"
- -D "TEST_OUTPUT=testhdf5_fortran.txt"
- #-D "TEST_REFERENCE=testhdf5_fortran.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/fshared"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
-# set_tests_properties (FORTRAN_testhdf5_fortran-shared PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s")
- set_tests_properties (FORTRAN_testhdf5_fortran-shared PROPERTIES DEPENDS "FORTRAN_testhdf5_fortran;FORTRAN_testhdf5-shared-clear-objects")
-
- #-- Adding test for testhdf5_fortran_1_8
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME FORTRAN_testhdf5_fortran_1_8-shared COMMAND $<TARGET_FILE:testhdf5_fortran_1_8-shared>)
- else ()
- add_test (NAME FORTRAN_testhdf5_fortran_1_8-shared COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:testhdf5_fortran_1_8-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_REGEX= 0 error.s."
- -D "TEST_MATCH= 0 error(s)"
- -D "TEST_OUTPUT=testhdf5_fortran_1_8.txt"
- #-D "TEST_REFERENCE=testhdf5_fortran_1_8.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/fshared"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
-# set_tests_properties (FORTRAN_testhdf5_fortran_1_8-shared PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s")
- set_tests_properties (FORTRAN_testhdf5_fortran_1_8-shared PROPERTIES DEPENDS FORTRAN_testhdf5_fortran_1_8)
-
- #-- Adding test for fortranlib_test_F03
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND $<TARGET_FILE:fortranlib_test_F03-shared>)
- else ()
- add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:fortranlib_test_F03-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_REGEX= 0 error.s."
- -D "TEST_MATCH= 0 error(s)"
- -D "TEST_OUTPUT=fortranlib_test_F03.txt"
- #-D "TEST_REFERENCE=fortranlib_test_F03.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/fshared"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
-# set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s")
- set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES DEPENDS FORTRAN_fortranlib_test_F03)
-
- #-- Adding test for fflush1
- add_test (NAME FORTRAN_fflush1-shared COMMAND $<TARGET_FILE:fflush1-shared>)
- set_tests_properties (FORTRAN_fflush1-shared PROPERTIES DEPENDS FORTRAN_fflush2)
-
- #-- Adding test for fflush2
- add_test (NAME FORTRAN_fflush2-shared COMMAND $<TARGET_FILE:fflush2-shared>)
- set_tests_properties (FORTRAN_fflush2-shared PROPERTIES DEPENDS FORTRAN_fflush1-shared)
-endif ()
diff --git a/fortran/test/Makefile.am b/fortran/test/Makefile.am
index 8613cf9..f0d7f03 100644
--- a/fortran/test/Makefile.am
+++ b/fortran/test/Makefile.am
@@ -35,7 +35,7 @@ else
endif
# Our main targets, the tests themselves
-TEST_PROG=fortranlib_test fflush1 fflush2 fortranlib_test_1_8 fortranlib_test_F03
+TEST_PROG=fortranlib_test fflush1 fflush2 fortranlib_test_1_8 fortranlib_test_F03 vol_connector
check_PROGRAMS=$(TEST_PROG)
@@ -50,6 +50,7 @@ fortranlib_test_1_8_SOURCES = tH5O.F90 tH5A_1_8.F90 tH5G_1_8.F90 tH5MISC_1_8.F90
fortranlib_test_F03_SOURCES = tH5E_F03.F90 tH5F_F03.F90 tH5L_F03.F90 \
tH5O_F03.F90 tH5P_F03.F90 tH5T_F03.F90 tHDF5_F03.F90 fortranlib_test_F03.F90
+vol_connector_SOURCES=vol_connector.F90
fflush1_SOURCES=fflush1.F90
fflush2_SOURCES=fflush2.F90
diff --git a/fortran/test/tH5F.F90 b/fortran/test/tH5F.F90
index 2501996..b898c21 100644
--- a/fortran/test/tH5F.F90
+++ b/fortran/test/tH5F.F90
@@ -105,6 +105,10 @@ CONTAINS
INTEGER(SIZE_T) :: obj_count
INTEGER(HID_T) :: t1, t2, t3, t4
+ ! File numbers
+ INTEGER :: file_num1
+ INTEGER :: file_num2
+
!
!data buffers
!
@@ -287,6 +291,18 @@ CONTAINS
IF(obj_count.NE.2)THEN
total_error = total_error + 1
ENDIF
+
+ !
+ !Check file numbers
+ !
+ CALL h5fget_fileno_f(file1_id, file_num1, error)
+ CALL check("h5fget_fileno_f",error,total_error)
+ CALL h5fget_fileno_f(file2_id, file_num2, error)
+ CALL check("h5fget_fileno_f",error,total_error)
+ IF(file_num1 .EQ. file_num2) THEN
+ write(*,*) "file numbers aren't supposed to match"
+ END IF
+
!
!mount the second file under the first file's "/G" group.
!
@@ -431,6 +447,8 @@ CONTAINS
INTEGER, DIMENSION(4,6) :: dset_data, data_out
INTEGER(HSIZE_T), DIMENSION(2) :: data_dims
INTEGER(HSIZE_T) :: file_size
+ INTEGER :: file_num1
+ INTEGER :: file_num2
CHARACTER(LEN=80) :: file_name
INTEGER(SIZE_T) :: name_size
@@ -499,6 +517,17 @@ CONTAINS
CALL check("h5fget_filesize_f",error,total_error)
!
+ !Check file numbers
+ !
+ CALL h5fget_fileno_f(file_id, file_num1, error)
+ CALL check("h5fget_fileno_f",error,total_error)
+ CALL h5fget_fileno_f(reopen_id, file_num2, error)
+ CALL check("h5fget_fileno_f",error,total_error)
+ IF(file_num1 .NE. file_num2) THEN
+ write(*,*) "file numbers don't match"
+ END IF
+
+ !
!Open the dataset based on the reopen_id.
!
CALL h5dopen_f(reopen_id, dsetname, dset_id, error)
diff --git a/fortran/test/tH5MISC_1_8.F90 b/fortran/test/tH5MISC_1_8.F90
index 79fbf3e..b8c777c 100644
--- a/fortran/test/tH5MISC_1_8.F90
+++ b/fortran/test/tH5MISC_1_8.F90
@@ -189,8 +189,9 @@ SUBROUTINE test_h5s_encode(total_error)
INTEGER(hid_t) :: sid1, sid3! Dataspace ID
INTEGER(hid_t) :: decoded_sid1, decoded_sid3
+ INTEGER(hid_t) :: fapl ! File access property
INTEGER :: rank ! LOGICAL rank of dataspace
- INTEGER(size_t) :: sbuf_size=0, scalar_size=0
+ INTEGER(size_t) :: new_size = 0, old_size = 0, orig_size=0, scalar_size=0
! Make sure the size is large
CHARACTER(LEN=288) :: sbuf
@@ -228,18 +229,36 @@ SUBROUTINE test_h5s_encode(total_error)
! Encode simple data space in a buffer
- ! First find the buffer size
- CALL H5Sencode_f(sid1, sbuf, sbuf_size, error)
- CALL check("H5Sencode", error, total_error)
+ ! Find the buffer size without fapl
+ CALL H5Sencode_f(sid1, sbuf, orig_size, error)
+ CALL check("H5Sencode_f", error, total_error)
+ CALL verify("H5Sencode_f", INT(orig_size), 279, total_error)
+
+ ! Create file access property list
+ CALL h5pcreate_f(H5P_FILE_ACCESS_F, fapl, error)
+ CALL check("h5pcreate_f", error, total_error)
+
+ ! Find the buffer size with fapl (default old format)
+ CALL H5Sencode_f(sid1, sbuf, old_size, error, fapl)
+ CALL check("H5Sencode_f", error, total_error)
+ CALL verify("H5Sencode_f", INT(old_size), 279, total_error)
+ ! Set fapl to latest file format
+ CALL H5Pset_libver_bounds_f(fapl, H5F_LIBVER_LATEST_F, H5F_LIBVER_LATEST_F, error)
+ CALL check("H5Pset_libver_bounds_f",error, total_error)
- ! Try decoding bogus buffer
+ ! Find the buffer size with fapl set to latest format
+ CALL H5Sencode_f(sid1, sbuf, new_size, error, fapl)
+ CALL check("H5Sencode_f", error, total_error)
+ CALL verify("H5Sencode_f", INT(new_size), 101, total_error)
+ ! Try decoding bogus buffer
CALL H5Sdecode_f(sbuf, decoded_sid1, error)
CALL verify("H5Sdecode", error, -1, total_error)
- CALL H5Sencode_f(sid1, sbuf, sbuf_size, error)
- CALL check("H5Sencode", error, total_error)
+ ! Encode according to the latest file format
+ CALL H5Sencode_f(sid1, sbuf, new_size, error, fapl)
+ CALL check("H5Sencode_f", error, total_error)
! Decode from the dataspace buffer and return an object handle
CALL H5Sdecode_f(sbuf, decoded_sid1, error)
diff --git a/fortran/test/tH5O_F03.F90 b/fortran/test/tH5O_F03.F90
index d1a9ddb..78b6453 100644
--- a/fortran/test/tH5O_F03.F90
+++ b/fortran/test/tH5O_F03.F90
@@ -270,8 +270,6 @@ CONTAINS
! A(8) = tm_yday int days since January 1 0-365
! A(9) = tm_isdst int Daylight Saving Time flag
!
- INTEGER(C_INT), DIMENSION(:), POINTER :: c_atime, c_btime, c_ctime, c_mtime
- INTEGER(C_INT), DIMENSION(1:8) :: atime, btime, ctime, mtime
INTEGER :: len, i
INTEGER :: idx
INTEGER :: ierr
diff --git a/fortran/test/vol_connector.F90 b/fortran/test/vol_connector.F90
new file mode 100644
index 0000000..aabb2b8
--- /dev/null
+++ b/fortran/test/vol_connector.F90
@@ -0,0 +1,284 @@
+!****h* root/fortran/test/vol_connector.F90
+!
+! NAME
+! vol_connector.F90
+!
+! FUNCTION
+!
+! Tests basic Fortran VOL plugin operations (registration, etc.).
+! Uses the null VOL connector (built with the testing code)
+! which is loaded as a dynamic plugin.
+!
+! COPYRIGHT
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by The HDF Group. *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the COPYING file, which can be found at the root of the source code *
+! distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+! If you do not have access to either file, you may request a copy from *
+! help@hdfgroup.org. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+!
+!*****
+
+MODULE VOL_TMOD
+
+ USE HDF5
+ USE TH5_MISC
+ USE TH5_MISC_GEN
+ IMPLICIT NONE
+
+ INTEGER, PARAMETER :: NATIVE_VOL_CONNECTOR_VALUE = 0
+ CHARACTER(LEN=180) :: NATIVE_VOL_CONNECTOR_NAME
+
+CONTAINS
+
+ !-------------------------------------------------------------------------
+ ! Function: test_registration_by_name()
+ !
+ ! Purpose: Tests if we can load, register, and close a VOL
+ ! connector by name.
+ !
+ !-------------------------------------------------------------------------
+ !
+
+ SUBROUTINE test_registration_by_name(total_error)
+
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+ INTEGER :: error = 0
+
+ LOGICAL :: is_registered = .FALSE.
+ INTEGER(hid_t) :: vol_id = 0, vol_id_out = 1
+ CHARACTER(LEN=64) :: name
+ CHARACTER(LEN=1) :: name_null
+ INTEGER(SIZE_T) :: name_len
+ INTEGER(hid_t) :: file_id
+
+ ! The null VOL connector should not be registered at the start of the test
+ CALL H5VLis_connector_registered_f( "FAKE_VOL_CONNECTOR_NAME", is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .FALSE., total_error)
+
+ ! Register the connector by name
+ CALL H5VLregister_connector_by_name_f(NATIVE_VOL_CONNECTOR_NAME, vol_id, error)
+ CALL check("H5VLregister_connector_by_name_f",error,total_error)
+
+ ! The connector should be registered now
+ CALL H5VLis_connector_registered_f(NATIVE_VOL_CONNECTOR_NAME, is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .TRUE., total_error)
+
+ CALL H5VLget_connector_id_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error)
+ CALL check("H5VLget_connector_id_f",error,total_error)
+
+ CALL H5Fcreate_f("voltest.h5",H5F_ACC_TRUNC_F, file_id, error)
+ CALL check("H5F_create_f",error,total_error)
+
+ CALL H5VLget_connector_name_f(file_id, name, error, name_len)
+ CALL check("H5VLget_connector_name_f",error,total_error)
+ CALL VERIFY("H5VLget_connector_name_f", INT(name_len), LEN_TRIM(NATIVE_VOL_CONNECTOR_NAME), total_error)
+
+ CALL H5VLget_connector_name_f(file_id, name, error)
+ CALL check("H5VLget_connector_name_f",error,total_error)
+ CALL VERIFY("H5VLget_connector_name_f", TRIM(name), NATIVE_VOL_CONNECTOR_NAME, total_error)
+
+ CALL H5VLget_connector_name_f(file_id, name_null, error, name_len)
+ CALL check("H5VLget_connector_name_f",error,total_error)
+ CALL VERIFY("H5VLget_connector_name_f", INT(name_len), LEN_TRIM(NATIVE_VOL_CONNECTOR_NAME), total_error)
+
+ CALL H5VLget_connector_name_f(file_id, name_null, error)
+ CALL check("H5VLget_connector_name_f",error,total_error)
+ CALL VERIFY("H5VLget_connector_name_f", name_null, NATIVE_VOL_CONNECTOR_NAME(1:1), total_error)
+
+ CALL H5Fclose_f(file_id, error)
+ CALL check("H5Fclose_f",error,total_error)
+
+ CALL H5VLclose_f(vol_id_out, error)
+ CALL check("H5VLclose_f",error, total_error)
+
+ END SUBROUTINE test_registration_by_name
+
+ !-------------------------------------------------------------------------
+ ! Function: test_registration_by_value()
+ !
+ ! Purpose: Tests if we can load, register, and close a VOL
+ ! connector by value.
+ !
+ !-------------------------------------------------------------------------
+
+ SUBROUTINE test_registration_by_value(total_error)
+
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+ INTEGER :: error = 0
+
+ LOGICAL :: is_registered = .FALSE.
+ INTEGER(hid_t) :: vol_id = 0
+
+
+ ! The null VOL connector should not be registered at the start of the test
+ CALL H5VLis_connector_registered_f( "FAKE_VOL_CONNECTOR_NAME", is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .FALSE., total_error)
+
+ ! Register the connector by value
+ CALL H5VLregister_connector_by_value_f(NATIVE_VOL_CONNECTOR_VALUE, vol_id, error)
+ CALL check("H5VLregister_connector_by_value_f", error, total_error)
+
+ ! The connector should be registered now
+ CALL H5VLis_connector_registered_f(NATIVE_VOL_CONNECTOR_NAME, is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .TRUE., total_error)
+
+ END SUBROUTINE test_registration_by_value
+
+
+ !-------------------------------------------------------------------------
+ ! Function: test_registration_by_name()
+ !
+ ! Purpose: Tests if we can load, register, and close a VOL
+ ! connector by name.
+ !
+ !-------------------------------------------------------------------------
+ !
+
+ SUBROUTINE test_registration_by_fapl(total_error)
+
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+ INTEGER :: error = 0
+
+ LOGICAL :: is_registered = .FALSE.
+ INTEGER(hid_t) :: vol_id = 0, vol_id_out = 1
+ INTEGER(hid_t) :: file_id
+ INTEGER(hid_t) :: fapl_id
+ TYPE(C_PTR) :: f_ptr
+
+ CALL H5VLis_connector_registered_f( "FAKE_VOL_CONNECTOR_NAME", is_registered, error)
+
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .FALSE., total_error)
+
+ ! The null VOL connector should not be registered at the start of the test
+ CALL H5VLis_connector_registered_f( "FAKE_VOL_CONNECTOR_NAME", is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .FALSE., total_error)
+
+ CALL H5VLregister_connector_by_name_f(NATIVE_VOL_CONNECTOR_NAME, vol_id, error)
+ CALL check("H5VLregister_connector_by_name_f",error,total_error)
+
+ ! The connector should be registered now
+ CALL H5VLis_connector_registered_f(NATIVE_VOL_CONNECTOR_NAME, is_registered, error)
+ CALL check("H5VLis_connector_registered_f",error,total_error)
+ CALL VERIFY("H5VLis_connector_registered_f", is_registered, .TRUE., total_error)
+
+ ! Register the connector
+ CALL H5Pcreate_f(H5P_FILE_ACCESS_F, fapl_id, error)
+ CALL check("H5Pcreate_f",error,total_error)
+
+ IF(TRIM(NATIVE_VOL_CONNECTOR_NAME) .EQ. "native")THEN
+ CALL H5Pset_vol_f(fapl_id, vol_id, error)
+ CALL check("H5Pset_vol_f",error,total_error)
+
+ CALL H5Pget_vol_id_f(fapl_id, vol_id_out, error)
+ CALL check("H5Pget_vol_id_f",error,total_error)
+ CALL VERIFY("H5Pget_vol_id_f", vol_id_out, vol_id, total_error)
+
+ f_ptr = C_NULL_PTR
+ CALL H5Pset_vol_f(fapl_id, vol_id, error, f_ptr)
+ CALL check("H5Pset_vol_f",error,total_error)
+
+ CALL H5Pget_vol_id_f(fapl_id, vol_id_out, error)
+ CALL check("H5Pget_vol_id_f",error,total_error)
+ CALL VERIFY("H5Pget_vol_id_f", vol_id_out, vol_id, total_error)
+ ENDIF
+
+ CALL H5VLget_connector_id_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error)
+ CALL check("H5VLget_connector_id_f",error,total_error)
+ CALL VERIFY("H5VLget_connector_id_f", vol_id_out, vol_id, total_error)
+ CALL H5Fcreate_f("voltest.h5",H5F_ACC_TRUNC_F, file_id, error, H5P_DEFAULT_F, fapl_id)
+
+ CALL check("H5F_create_f",error,total_error)
+
+ CALL H5VLclose_f(vol_id_out, error)
+ CALL check("H5VLclose_f",error, total_error)
+
+ CALL H5VLclose_f(vol_id, error)
+ CALL check("H5VLclose_f",error, total_error)
+
+ CALL H5Fclose_f(file_id, error)
+ CALL check("H5Fclose_f",error,total_error)
+
+ CALL H5Pclose_f(fapl_id, error)
+ CALL check("H5Pclose_f",error,total_error)
+
+ END SUBROUTINE test_registration_by_fapl
+
+
+END MODULE VOL_TMOD
+
+
+PROGRAM vol_connector
+
+ USE HDF5
+ USE VOL_TMOD
+
+ IMPLICIT NONE
+ INTEGER :: total_error = 0
+ INTEGER :: error
+ INTEGER :: ret_total_error
+ LOGICAL :: cleanup, status
+ CHARACTER(LEN=12) :: VOL_CONNECTOR_ENV
+ INTEGER :: LEN = 0
+
+ CALL h5open_f(error)
+ cleanup = .TRUE.
+ CALL h5_env_nocleanup_f(status)
+ IF(status) cleanup=.FALSE.
+
+ WRITE(*,'(18X,A)') '=============================='
+ WRITE(*,'(24X,A)') 'FORTRAN VOL tests'
+ WRITE(*,'(18X,A)') '=============================='
+
+ WRITE(*,'(A)') "Testing VOL connector plugin functionality."
+
+ ! Check to see if the VOL connector was set with an env variable
+ CALL GET_ENVIRONMENT_VARIABLE("HDF5_VOL_CONNECTOR", VOL_CONNECTOR_ENV, LEN)
+ IF(LEN.NE.0)THEN
+ NATIVE_VOL_CONNECTOR_NAME = TRIM(VOL_CONNECTOR_ENV)
+ ELSE
+ NATIVE_VOL_CONNECTOR_NAME = "native"
+ ENDIF
+
+ ret_total_error = 0
+ CALL test_registration_by_name(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing VOL registration by name', total_error)
+
+ ret_total_error = 0
+ CALL test_registration_by_value(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing VOL registration by value', total_error)
+
+ ret_total_error = 0
+ CALL test_registration_by_fapl(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing VOL registration by fapl', total_error)
+
+ WRITE(*, fmt = '(/18X,A)') '============================================'
+ WRITE(*, fmt = '(19X, A)', advance='NO') ' FORTRAN VOL tests completed with '
+ WRITE(*, fmt = '(I4)', advance='NO') total_error
+ WRITE(*, fmt = '(A)' ) ' error(s) ! '
+ WRITE(*,'(18X,A)') '============================================'
+
+ CALL h5close_f(error)
+
+ ! if errors detected, exit with non-zero code.
+ IF (total_error .NE. 0) CALL h5_exit_f(1)
+
+END PROGRAM vol_connector
diff --git a/fortran/testpar/CMakeTests.cmake b/fortran/testpar/CMakeTests.cmake
index d00a6fc..d0abe0e 100644
--- a/fortran/testpar/CMakeTests.cmake
+++ b/fortran/testpar/CMakeTests.cmake
@@ -15,4 +15,4 @@
### T E S T I N G ###
##############################################################################
##############################################################################
-add_test (NAME FORT_parallel_test COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:parallel_test> ${MPIEXEC_POSTFLAGS})
+add_test (NAME MPI_TEST_FORT_parallel_test COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:parallel_test> ${MPIEXEC_POSTFLAGS})
diff --git a/hl/Makefile.am b/hl/Makefile.am
index aee1f86..ded7aa0 100644
--- a/hl/Makefile.am
+++ b/hl/Makefile.am
@@ -31,11 +31,27 @@ endif
if BUILD_CXX_CONDITIONAL
CXX_DIR = c++
endif
+if BUILD_TESTS_CONDITIONAL
+ TEST_DIR = test
+else
+ TEST_DIR =
+endif
+if BUILD_TOOLS_CONDITIONAL
+ TOOLS_DIR = tools
+else
+ TOOLS_DIR =
+endif
## Don't recurse into any subdirectories if HDF5 is not configured to
## use the HL library
if BUILD_HDF5_HL_CONDITIONAL
- SUBDIRS=src test tools $(CXX_DIR) $(FORTRAN_DIR)
+ SUBDIRS=src $(TEST_DIR) $(TOOLS_DIR) $(CXX_DIR) $(FORTRAN_DIR)
+
+# Test with just the native connector, with a single pass-through connector
+# and with a doubly-stacked pass-through.
+VOL_LIST = native "pass_through under_vol=0;under_info={}" \
+ "pass_through under_vol=505;under_info={under_vol=0;under_info={}}"
+
endif
DIST_SUBDIRS=src test tools c++ fortran examples
diff --git a/hl/c++/Makefile.am b/hl/c++/Makefile.am
index 1968bf5..f9ea328 100644
--- a/hl/c++/Makefile.am
+++ b/hl/c++/Makefile.am
@@ -18,7 +18,13 @@
include $(top_srcdir)/config/commence.am
-SUBDIRS=src test
+if BUILD_TESTS_CONDITIONAL
+ TESTSERIAL_DIR =test
+else
+ TESTSERIAL_DIR=
+endif
+
+SUBDIRS=src $(TESTSERIAL_DIR)
DIST_SUBDIRS=src test examples
# Install examples
diff --git a/hl/c++/examples/CMakeLists.txt b/hl/c++/examples/CMakeLists.txt
index 8e64239..50e08e8 100644
--- a/hl/c++/examples/CMakeLists.txt
+++ b/hl/c++/examples/CMakeLists.txt
@@ -5,13 +5,22 @@ project (HDF5_HL_CPP_EXAMPLES CXX)
# Add in the examples for the Packet Table codes
# --------------------------------------------------------------------
add_executable (ptExampleFL ${HDF5_HL_CPP_EXAMPLES_SOURCE_DIR}/ptExampleFL.cpp)
-target_include_directories(ptExampleFL PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (ptExampleFL STATIC)
-target_link_libraries (ptExampleFL PRIVATE
- ${HDF5_HL_CPP_LIB_TARGET}
- ${HDF5_HL_LIB_TARGET}
- ${HDF5_LIB_TARGET}
-)
+target_include_directories (ptExampleFL PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (ptExampleFL STATIC)
+ target_link_libraries (ptExampleFL PRIVATE
+ ${HDF5_HL_CPP_LIB_TARGET}
+ ${HDF5_HL_LIB_TARGET}
+ ${HDF5_LIB_TARGET}
+ )
+else ()
+ TARGET_C_PROPERTIES (ptExampleFL SHARED)
+ target_link_libraries (ptExampleFL PRIVATE
+ ${HDF5_HL_CPP_LIBSH_TARGET}
+ ${HDF5_HL_LIBSH_TARGET}
+ ${HDF5_LIBSH_TARGET}
+ )
+endif ()
set_target_properties (ptExampleFL PROPERTIES FOLDER examples/hl/cpp)
if (BUILD_TESTING)
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 77419c6..eb83d8c 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -8,21 +8,23 @@ project (HDF5_HL_CPP_SRC CXX)
set (HDF5_HL_CPP_SOURCES ${HDF5_HL_CPP_SRC_SOURCE_DIR}/H5PacketTable.cpp)
set (HDF5_HL_CPP_HDRS ${HDF5_HL_CPP_SRC_SOURCE_DIR}/H5PacketTable.h)
-add_library (${HDF5_HL_CPP_LIB_TARGET} STATIC ${HDF5_HL_CPP_SOURCES})
-target_include_directories(${HDF5_HL_CPP_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-TARGET_C_PROPERTIES (${HDF5_HL_CPP_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_HL_CPP_LIB_TARGET} PUBLIC ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_CPP_LIB_TARGET}")
-H5_SET_LIB_OPTIONS (${HDF5_HL_CPP_LIB_TARGET} ${HDF5_HL_CPP_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_HL_CPP_LIB_TARGET} PROPERTIES FOLDER libraries/hl)
-set (install_targets ${HDF5_HL_CPP_LIB_TARGET})
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_HL_CPP_LIB_TARGET} STATIC ${HDF5_HL_CPP_SOURCES})
+ target_include_directories (${HDF5_HL_CPP_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ TARGET_C_PROPERTIES (${HDF5_HL_CPP_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_HL_CPP_LIB_TARGET} PUBLIC ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_CPP_LIB_TARGET}")
+ H5_SET_LIB_OPTIONS (${HDF5_HL_CPP_LIB_TARGET} ${HDF5_HL_CPP_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_HL_CPP_LIB_TARGET} PROPERTIES FOLDER libraries/hl)
+ set (install_targets ${HDF5_HL_CPP_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_HL_CPP_LIBSH_TARGET} SHARED ${HDF5_HL_CPP_SOURCES})
- target_include_directories(${HDF5_HL_CPP_LIBSH_TARGET}
+ target_include_directories (${HDF5_HL_CPP_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -56,7 +58,9 @@ if (HDF5_EXPORTED_TARGETS)
if (BUILD_SHARED_LIBS)
INSTALL_TARGET_PDB (${HDF5_HL_CPP_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} hlcpplibraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_HL_CPP_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlcpplibraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_HL_CPP_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlcpplibraries)
+ endif ()
install (
TARGETS
@@ -83,7 +87,9 @@ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
set (_PKG_CONFIG_LIBS_PRIVATE)
-set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_CPP_LIB_CORENAME}")
+if (NOT ONLY_SHARED_LIBS)
+ set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_CPP_LIB_CORENAME}")
+endif ()
if (BUILD_SHARED_LIBS)
set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_HL_CPP_LIB_CORENAME}")
endif ()
diff --git a/hl/c++/test/CMakeLists.txt b/hl/c++/test/CMakeLists.txt
index 68c049c..cfb24a8 100644
--- a/hl/c++/test/CMakeLists.txt
+++ b/hl/c++/test/CMakeLists.txt
@@ -2,15 +2,26 @@ cmake_minimum_required (VERSION 3.10)
project (HDF5_HL_CPP_TEST CXX)
add_executable (hl_ptableTest ${HDF5_HL_CPP_TEST_SOURCE_DIR}/ptableTest.cpp)
-target_include_directories(hl_ptableTest PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (hl_ptableTest STATIC)
-target_link_libraries (hl_ptableTest PRIVATE
- ${HDF5_LIB_TARGET}
- ${HDF5_TEST_LIB_TARGET}
- ${HDF5_CPP_LIB_TARGET}
- ${HDF5_HL_LIB_TARGET}
- ${HDF5_HL_CPP_LIB_TARGET}
-)
+target_include_directories (hl_ptableTest PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (hl_ptableTest STATIC)
+ target_link_libraries (hl_ptableTest PRIVATE
+ ${HDF5_LIB_TARGET}
+ ${HDF5_TEST_LIB_TARGET}
+ ${HDF5_CPP_LIB_TARGET}
+ ${HDF5_HL_LIB_TARGET}
+ ${HDF5_HL_CPP_LIB_TARGET}
+ )
+else ()
+ TARGET_C_PROPERTIES (hl_ptableTest SHARED)
+ target_link_libraries (hl_ptableTest PRIVATE
+ ${HDF5_LIBSH_TARGET}
+ ${HDF5_TEST_LIBSH_TARGET}
+ ${HDF5_CPP_LIBSH_TARGET}
+ ${HDF5_HL_LIBSH_TARGET}
+ ${HDF5_HL_CPP_LIBSH_TARGET}
+ )
+endif ()
set_target_properties (hl_ptableTest PROPERTIES FOLDER test/hl/cpp)
include (CMakeTests.cmake)
diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt
index 97c6de5..86c1770 100644
--- a/hl/examples/CMakeLists.txt
+++ b/hl/examples/CMakeLists.txt
@@ -28,9 +28,14 @@ set (examples
foreach (example ${examples})
add_executable (hl_ex_${example} ${HDF5_HL_EXAMPLES_SOURCE_DIR}/${example}.c)
- target_include_directories(hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (hl_ex_${example} STATIC)
- target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
+ target_include_directories (hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (hl_ex_${example} STATIC)
+ target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (hl_ex_${example} SHARED)
+ target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
set_target_properties (hl_ex_${example} PROPERTIES FOLDER examples/hl)
endforeach ()
diff --git a/hl/examples/CMakeTests.cmake b/hl/examples/CMakeTests.cmake
index 166fa7c..c1fd6c2 100644
--- a/hl/examples/CMakeTests.cmake
+++ b/hl/examples/CMakeTests.cmake
@@ -51,7 +51,7 @@ add_custom_target(hl_ex_ex_ds1_files ALL COMMENT "Copying files needed by hl_ex_
ex_table_12.h5
ex_ds1.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (HL_ex-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "HL_ex-clear-objects")
@@ -71,7 +71,7 @@ foreach (example ${examples})
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (HL_ex_${example} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "HL_ex_${example}")
diff --git a/hl/fortran/Makefile.am b/hl/fortran/Makefile.am
index ad18a21..7d24770 100644
--- a/hl/fortran/Makefile.am
+++ b/hl/fortran/Makefile.am
@@ -23,7 +23,13 @@
include $(top_srcdir)/config/commence.am
-SUBDIRS=src test
+if BUILD_TESTS_CONDITIONAL
+ TESTSERIAL_DIR =test
+else
+ TESTSERIAL_DIR=
+endif
+
+SUBDIRS=src $(TESTSERIAL_DIR)
DIST_SUBDIRS=src test examples
# Install examples
diff --git a/hl/fortran/examples/CMakeLists.txt b/hl/fortran/examples/CMakeLists.txt
index 27971b2..e41b8fe 100644
--- a/hl/fortran/examples/CMakeLists.txt
+++ b/hl/fortran/examples/CMakeLists.txt
@@ -8,18 +8,10 @@ set (examples
foreach (example ${examples})
add_executable (hl_f90_ex_${example} ${HDF5_HL_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
- target_include_directories (hl_f90_ex_${example}
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
- )
target_compile_options(hl_f90_ex_${example}
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries (hl_f90_ex_${example}
- PRIVATE
- ${HDF5_HL_F90_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
- )
# set_property(TARGET hl_f90_ex_${example} APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
# )
@@ -29,11 +21,35 @@ foreach (example ${examples})
if(MSVC)
set_property(TARGET hl_f90_ex_${example} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
- set_target_properties (hl_f90_ex_${example} PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER examples/hl/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
- )
+ if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (hl_f90_ex_${example}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
+ )
+ target_link_libraries (hl_f90_ex_${example}
+ PRIVATE
+ ${HDF5_HL_F90_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET}
+ )
+ set_target_properties (hl_f90_ex_${example} PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER examples/hl/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ else ()
+ target_include_directories (hl_f90_ex_${example}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
+ )
+ target_link_libraries (hl_f90_ex_${example}
+ PRIVATE
+ ${HDF5_HL_F90_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}
+ )
+ set_target_properties (hl_f90_ex_${example} PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER examples/hl/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
+ )
+ endif ()
endforeach ()
if (BUILD_TESTING)
diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
index 7ec3b63..a684088 100644
--- a/hl/fortran/src/CMakeLists.txt
+++ b/hl/fortran/src/CMakeLists.txt
@@ -16,7 +16,7 @@ endif ()
#-----------------------------------------------------------------------------
add_executable (H5HL_buildiface ${HDF5_HL_F90_SRC_SOURCE_DIR}/H5HL_buildiface.F90 )
-target_include_directories(H5HL_buildiface PRIVATE "${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}")
+target_include_directories (H5HL_buildiface PRIVATE "${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}")
if (WIN32 AND MSVC)
if (BUILD_SHARED_LIBS)
set_target_properties (H5HL_buildiface PROPERTIES COMPILE_FLAGS "/MT")
@@ -37,8 +37,10 @@ if (BUILD_SHARED_LIBS)
file (MAKE_DIRECTORY "${HDF5_HL_F90_BINARY_DIR}/shared")
set (MODSH_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/shared/${HDF_CFG_BUILD_TYPE})
endif ()
-file (MAKE_DIRECTORY "${HDF5_HL_F90_BINARY_DIR}/static")
-set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
+if (NOT ONLY_SHARED_LIBS)
+ file (MAKE_DIRECTORY "${HDF5_HL_F90_BINARY_DIR}/static")
+ set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE})
+endif ()
#-----------------------------------------------------------------------------
# hl_f90CStub lib
@@ -54,24 +56,25 @@ set_source_files_properties (${HDF5_HL_F90_C_SOURCES} PROPERTIES LANGUAGE C)
set (HDF5_HL_F90_HEADERS ${HDF5_HL_F90_SRC_SOURCE_DIR}/H5LTf90proto.h)
-add_library (${HDF5_HL_F90_C_LIB_TARGET} STATIC ${HDF5_HL_F90_C_SOURCES} ${HDF5_HL_F90_HEADERS})
-target_include_directories(${HDF5_HL_F90_C_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-TARGET_C_PROPERTIES (${HDF5_HL_F90_C_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_HL_F90_C_LIB_TARGET} PUBLIC ${HDF5_F90_C_LIB_TARGET} ${HDF5_HL_LIB_TARGET})
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_F90_C_LIB_TARGET}")
-H5_SET_LIB_OPTIONS (${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_HL_F90_C_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_HL_F90_C_LIB_TARGET} PROPERTIES
- FOLDER libraries/hl/fortran
- LINKER_LANGUAGE C
-)
-set (install_targets ${HDF5_HL_F90_C_LIB_TARGET})
-
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_HL_F90_C_LIB_TARGET} STATIC ${HDF5_HL_F90_C_SOURCES} ${HDF5_HL_F90_HEADERS})
+ target_include_directories (${HDF5_HL_F90_C_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ TARGET_C_PROPERTIES (${HDF5_HL_F90_C_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_HL_F90_C_LIB_TARGET} PUBLIC ${HDF5_F90_C_LIB_TARGET} ${HDF5_HL_LIB_TARGET})
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_F90_C_LIB_TARGET}")
+ H5_SET_LIB_OPTIONS (${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_HL_F90_C_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_HL_F90_C_LIB_TARGET} PROPERTIES
+ FOLDER libraries/hl/fortran
+ LINKER_LANGUAGE C
+ )
+ set (install_targets ${HDF5_HL_F90_C_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_HL_F90_C_LIBSH_TARGET} SHARED ${HDF5_HL_F90_C_SOURCES} ${HDF5_HL_F90_HEADERS})
- target_include_directories(${HDF5_HL_F90_C_LIBSH_TARGET}
+ target_include_directories (${HDF5_HL_F90_C_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -99,21 +102,23 @@ set (HDF5_HL_F90_F_BASE_SOURCES
${HDF5_HL_F90_SRC_SOURCE_DIR}/H5IMff.F90
)
-add_custom_command (
- OUTPUT ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90 ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
- COMMAND $<TARGET_FILE:H5HL_buildiface>
- WORKING_DIRECTORY ${HDF5_HL_F90_BINARY_DIR}/static
- DEPENDS ${HDF5_HL_F90_F_BASE_SOURCES}
- COMMENT "Generating the H5LTff_gen.F90, H5TBff_gen.F90 files"
-)
-add_custom_target (H5HLgen ALL
- DEPENDS ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90 ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
-)
-set_source_files_properties (
- ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90
- ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
- PROPERTIES GENERATED TRUE
-)
+if (NOT ONLY_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90 ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
+ COMMAND $<TARGET_FILE:H5HL_buildiface>
+ WORKING_DIRECTORY ${HDF5_HL_F90_BINARY_DIR}/static
+ DEPENDS ${HDF5_HL_F90_F_BASE_SOURCES}
+ COMMENT "Generating the H5LTff_gen.F90, H5TBff_gen.F90 files"
+ )
+ add_custom_target (H5HLgen ALL
+ DEPENDS ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90 ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
+ )
+ set_source_files_properties (
+ ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90
+ ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
+ PROPERTIES GENERATED TRUE
+ )
+endif ()
if (BUILD_SHARED_LIBS)
add_custom_command (
OUTPUT ${HDF5_HL_F90_BINARY_DIR}/shared/H5LTff_gen.F90 ${HDF5_HL_F90_BINARY_DIR}/shared/H5TBff_gen.F90
@@ -132,15 +137,16 @@ if (BUILD_SHARED_LIBS)
)
endif ()
-set (HDF5_HL_F90_F_SOURCES
- ${HDF5_HL_F90_F_BASE_SOURCES}
-
- # generated files
- ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90
- ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
-)
-set_source_files_properties (${HDF5_HL_F90_F_SOURCES} PROPERTIES LANGUAGE Fortran)
+if (NOT ONLY_SHARED_LIBS)
+ set (HDF5_HL_F90_F_SOURCES
+ ${HDF5_HL_F90_F_BASE_SOURCES}
+ # generated files
+ ${HDF5_HL_F90_BINARY_DIR}/static/H5LTff_gen.F90
+ ${HDF5_HL_F90_BINARY_DIR}/static/H5TBff_gen.F90
+ )
+ set_source_files_properties (${HDF5_HL_F90_F_SOURCES} PROPERTIES LANGUAGE Fortran)
+endif ()
if (BUILD_SHARED_LIBS)
set (HDF5_HL_F90_F_SOURCES_SHARED
${HDF5_HL_F90_F_BASE_SOURCES}
@@ -152,42 +158,43 @@ if (BUILD_SHARED_LIBS)
set_source_files_properties (${HDF5_HL_F90_F_SOURCES_SHARED} PROPERTIES LANGUAGE Fortran)
endif ()
-add_library (${HDF5_HL_F90_LIB_TARGET} STATIC ${HDF5_HL_F90_F_SOURCES})
-target_include_directories (${HDF5_HL_F90_LIB_TARGET}
- PRIVATE
- "${HDF5_F90_BINARY_DIR};${CMAKE_Fortran_MODULE_DIRECTORY}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
- INTERFACE
- "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-target_compile_definitions(${HDF5_HL_F90_LIB_TARGET}
- PUBLIC
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
- PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
-)
-target_link_libraries (${HDF5_HL_F90_LIB_TARGET}
- PUBLIC
- ${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_F90_LIB_TARGET}
-)
-#set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-#)
-#set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-#)
-if(MSVC)
- set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
-endif()
-set_target_properties (${HDF5_HL_F90_LIB_TARGET} PROPERTIES
- FOLDER libraries/hl/fortran
- LINKER_LANGUAGE Fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
-)
-H5_SET_LIB_OPTIONS (${HDF5_HL_F90_LIB_TARGET} ${HDF5_HL_F90_LIB_NAME} STATIC 0)
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_F90_LIB_TARGET}")
-set (install_targets ${install_targets} ${HDF5_HL_F90_LIB_TARGET})
-add_dependencies(${HDF5_HL_F90_LIB_TARGET} H5HLgen)
-
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_HL_F90_LIB_TARGET} STATIC ${HDF5_HL_F90_F_SOURCES})
+ target_include_directories (${HDF5_HL_F90_LIB_TARGET}
+ PRIVATE
+ "${HDF5_F90_BINARY_DIR};${CMAKE_Fortran_MODULE_DIRECTORY}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>"
+ INTERFACE
+ "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ target_compile_definitions(${HDF5_HL_F90_LIB_TARGET}
+ PUBLIC
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:HDF5F90_WINDOWS>
+ PRIVATE
+ $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ )
+ target_link_libraries (${HDF5_HL_F90_LIB_TARGET}
+ PUBLIC
+ ${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_F90_LIB_TARGET}
+ )
+# set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
+# )
+# set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} APPEND PROPERTY
+# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
+# )
+ if(MSVC)
+ set_property(TARGET ${HDF5_HL_F90_LIB_TARGET} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
+ endif()
+ set_target_properties (${HDF5_HL_F90_LIB_TARGET} PROPERTIES
+ FOLDER libraries/hl/fortran
+ LINKER_LANGUAGE Fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ H5_SET_LIB_OPTIONS (${HDF5_HL_F90_LIB_TARGET} ${HDF5_HL_F90_LIB_NAME} STATIC 0)
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_F90_LIB_TARGET}")
+ set (install_targets ${install_targets} ${HDF5_HL_F90_LIB_TARGET})
+ add_dependencies(${HDF5_HL_F90_LIB_TARGET} H5HLgen)
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_HL_F90_LIBSH_TARGET} SHARED ${HDF5_HL_F90_F_SOURCES_SHARED})
target_include_directories (${HDF5_HL_F90_LIBSH_TARGET}
@@ -240,24 +247,25 @@ endif ()
#-----------------------------------------------------------------------------
-set (mod_files
- ${MOD_BUILD_DIR}/h5ds.mod
- ${MOD_BUILD_DIR}/h5tb.mod
- ${MOD_BUILD_DIR}/h5tb_const.mod
- ${MOD_BUILD_DIR}/h5lt.mod
- ${MOD_BUILD_DIR}/h5lt_const.mod
- ${MOD_BUILD_DIR}/h5im.mod
-)
-
-install (
- FILES
- ${mod_files}
- DESTINATION
- ${HDF5_INSTALL_INCLUDE_DIR}/static
- COMPONENT
- fortheaders
-)
+if (NOT ONLY_SHARED_LIBS)
+ set (mod_files
+ ${MOD_BUILD_DIR}/h5ds.mod
+ ${MOD_BUILD_DIR}/h5tb.mod
+ ${MOD_BUILD_DIR}/h5tb_const.mod
+ ${MOD_BUILD_DIR}/h5lt.mod
+ ${MOD_BUILD_DIR}/h5lt_const.mod
+ ${MOD_BUILD_DIR}/h5im.mod
+ )
+ install (
+ FILES
+ ${mod_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}/static
+ COMPONENT
+ fortheaders
+ )
+endif ()
if (BUILD_SHARED_LIBS)
set (modsh_files
${MODSH_BUILD_DIR}/h5ds.mod
@@ -285,8 +293,10 @@ if (HDF5_EXPORTED_TARGETS)
INSTALL_TARGET_PDB (${HDF5_HL_F90_C_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
#INSTALL_TARGET_PDB (${HDF5_HL_F90_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
- #INSTALL_TARGET_PDB (${HDF5_HL_F90_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
+ #INSTALL_TARGET_PDB (${HDF5_HL_F90_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hlfortlibraries)
+ endif ()
install (
TARGETS
diff --git a/hl/fortran/src/H5DSff.F90 b/hl/fortran/src/H5DSff.F90
index 2dca479..5488bb2 100644
--- a/hl/fortran/src/H5DSff.F90
+++ b/hl/fortran/src/H5DSff.F90
@@ -304,7 +304,7 @@ CONTAINS
IMPLICIT NONE
INTEGER(hid_t), INTENT(in) :: did ! The dataset
INTEGER , INTENT(in) :: idx ! The dimension
- CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(in) :: label ! The label
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(in) :: label ! The label
INTEGER(SIZE_T), INTENT(in) :: label_len ! Length of label
END FUNCTION H5DSset_label_c
END INTERFACE
@@ -337,11 +337,11 @@ CONTAINS
IMPLICIT NONE
- INTEGER(hid_t), INTENT(in) :: did ! The dataget
- INTEGER , INTENT(in) :: idx ! The dimension
- CHARACTER(LEN=*), INTENT(in) :: label ! The label
- INTEGER(size_t) , INTENT(inout) :: size ! The length of the label buffer
- INTEGER :: errcode ! Error code
+ INTEGER(hid_t), INTENT(in) :: did ! The dataget
+ INTEGER , INTENT(in) :: idx ! The dimension
+ CHARACTER(LEN=*), INTENT(INOUT) :: label ! The label
+ INTEGER(size_t) , INTENT(INOUT) :: size ! The length of the label buffer
+ INTEGER :: errcode ! Error code
INTEGER :: c_idx
INTERFACE
@@ -352,7 +352,7 @@ CONTAINS
IMPLICIT NONE
INTEGER(hid_t), INTENT(in) :: did ! The dataget
INTEGER , INTENT(in) :: idx ! The dimension
- CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(in) :: label ! The label
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(INOUT) :: label ! The label
INTEGER(SIZE_T), INTENT(inout) :: size ! Length of label
END FUNCTION H5DSget_label_c
END INTERFACE
@@ -386,8 +386,8 @@ CONTAINS
IMPLICIT NONE
INTEGER(hid_t), INTENT(in) :: did ! The dataget
- CHARACTER(LEN=*), INTENT(out) :: name ! The name
- INTEGER(size_t) , INTENT(inout) :: size ! The length of the name buffer
+ CHARACTER(LEN=*), INTENT(INOUT) :: name ! The name
+ INTEGER(size_t) , INTENT(INOUT) :: size ! The length of the name buffer
INTEGER :: errcode ! Error code
INTERFACE
@@ -397,7 +397,7 @@ CONTAINS
IMPORT :: HID_T, SIZE_T
IMPLICIT NONE
INTEGER(hid_t), INTENT(in) :: did ! The dataget
- CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(out) :: name ! The name
+ CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(INOUT) :: name ! The name
INTEGER(SIZE_T), INTENT(inout) :: size ! Length of name
END FUNCTION H5DSget_scale_name_c
END INTERFACE
@@ -426,10 +426,10 @@ CONTAINS
SUBROUTINE H5DSget_num_scales_f( did, idx, num_scales, errcode)
IMPLICIT NONE
- INTEGER(hid_t), INTENT(in) :: did ! the dataset
- INTEGER , INTENT(in) :: idx ! the dimension of did to query
- INTEGER , INTENT(out) :: num_scales ! the number of Dimension Scales associated with did
- INTEGER :: errcode ! error code
+ INTEGER(hid_t), INTENT(in) :: did ! the dataset
+ INTEGER , INTENT(in) :: idx ! the dimension of did to query
+ INTEGER , INTENT(INOUT) :: num_scales ! the number of Dimension Scales associated with did
+ INTEGER :: errcode ! error code
INTEGER :: c_idx
INTERFACE
@@ -437,9 +437,9 @@ CONTAINS
BIND(C,NAME='h5dsget_num_scales_c')
IMPORT :: HID_T
IMPLICIT NONE
- INTEGER(hid_t), INTENT(in) :: did ! the dataset
- INTEGER , INTENT(in) :: idx ! the dimension of did to query
- INTEGER , INTENT(out) :: num_scales ! the number of Dimension Scales associated with did
+ INTEGER(hid_t), INTENT(in) :: did ! the dataset
+ INTEGER , INTENT(in) :: idx ! the dimension of did to query
+ INTEGER , INTENT(INOUT) :: num_scales ! the number of Dimension Scales associated with did
END FUNCTION H5DSget_num_scales_c
END INTERFACE
diff --git a/hl/fortran/src/H5HL_buildiface.F90 b/hl/fortran/src/H5HL_buildiface.F90
index dda8d56..1c5d9c8 100644
--- a/hl/fortran/src/H5HL_buildiface.F90
+++ b/hl/fortran/src/H5HL_buildiface.F90
@@ -293,7 +293,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(IN) :: dset_name'
WRITE(11,'(A)') ' INTEGER(hid_t), INTENT(in) :: type_id'
WRITE(11,'(A)') ' INTEGER(hsize_t), DIMENSION(*), INTENT(in) :: dims'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
@@ -354,7 +354,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' INTEGER(hid_t) , INTENT(IN) :: loc_id'
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(IN) :: dset_name'
WRITE(11,'(A)') ' INTEGER(hsize_t), DIMENSION(*), INTENT(in) :: dims'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
@@ -414,7 +414,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' INTEGER(hid_t) , INTENT(IN) :: loc_id'
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(IN) :: dset_name'
WRITE(11,'(A)') ' INTEGER(hsize_t), DIMENSION(*), INTENT(in) :: dims'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
@@ -510,7 +510,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(IN) :: dset_name'
WRITE(11,'(A)') ' INTEGER(hsize_t), DIMENSION(*), INTENT(in) :: dims'
WRITE(11,'(A)') ' INTEGER(hid_t), INTENT(in) :: type_id'
- WRITE(11,'(A)') ' INTEGER(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
+ WRITE(11,'(A)') ' INTEGER(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
@@ -540,7 +540,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' INTEGER(hid_t) , INTENT(IN) :: loc_id'
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(IN) :: dset_name'
WRITE(11,'(A)') ' INTEGER(hsize_t), DIMENSION(*), INTENT(in) :: dims'
- WRITE(11,'(A)') ' INTEGER(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
+ WRITE(11,'(A)') ' INTEGER(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT)'//TRIM(rank_dim_line(j))//', TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
@@ -712,7 +712,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' INTEGER(hsize_t), INTENT(in) :: start'
WRITE(11,'(A)') ' INTEGER(hsize_t), INTENT(in) :: nrecords'
WRITE(11,'(A)') ' INTEGER(size_t), INTENT(in) :: type_size'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN), DIMENSION(*), TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT), DIMENSION(*), TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen1'
@@ -778,7 +778,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' INTEGER(hsize_t), INTENT(in) :: start'
WRITE(11,'(A)') ' INTEGER(hsize_t), INTENT(in) :: nrecords'
WRITE(11,'(A)') ' INTEGER(size_t), INTENT(in) :: type_size'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(IN), DIMENSION(*), TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'),INTENT(INOUT), DIMENSION(*), TARGET :: buf'
WRITE(11,'(A)') ' INTEGER :: errcode '
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
WRITE(11,'(A)') ' TYPE(C_PTR) :: f_ptr'
@@ -809,7 +809,7 @@ PROGRAM H5HL_buildiface
WRITE(11,'(A)') ' CHARACTER(LEN=*), INTENT(in) :: field_name'
WRITE(11,'(A)') ' INTEGER(hid_t), INTENT(in) :: field_type'
WRITE(11,'(A)') ' INTEGER, INTENT(in) :: field_index'
- WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'), INTENT(in), DIMENSION(*), TARGET :: buf'
+ WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//'), INTENT(IN), DIMENSION(*), TARGET :: buf'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen'
WRITE(11,'(A)') ' INTEGER(size_t) :: namelen1'
WRITE(11,'(A)') ' INTEGER :: errcode'
diff --git a/hl/fortran/src/H5IMff.F90 b/hl/fortran/src/H5IMff.F90
index 6646828..ac4b794 100644
--- a/hl/fortran/src/H5IMff.F90
+++ b/hl/fortran/src/H5IMff.F90
@@ -539,7 +539,7 @@ CONTAINS
INTEGER, INTENT(in) :: pal_number ! palette number
INTEGER(hsize_t), DIMENSION(*), INTENT(inout) :: dims ! dimensions
INTEGER :: errcode ! error code
- INTEGER(size_t) :: namelen ! name length
+ INTEGER(size_t) :: namelen ! name length
INTERFACE
INTEGER FUNCTION h5imget_palette_info_c(loc_id,namelen,dset_name,pal_number,dims) &
@@ -551,7 +551,7 @@ CONTAINS
CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(in) :: dset_name ! name of the dataset
INTEGER, INTENT(in) :: pal_number ! palette number
INTEGER(hsize_t), DIMENSION(*), INTENT(inout) :: dims ! dimensions
- INTEGER(size_t) :: namelen ! name length
+ INTEGER(size_t) :: namelen ! name length
END FUNCTION h5imget_palette_info_c
END INTERFACE
diff --git a/hl/fortran/src/H5TBff.F90 b/hl/fortran/src/H5TBff.F90
index 2575b24..40adf95 100644
--- a/hl/fortran/src/H5TBff.F90
+++ b/hl/fortran/src/H5TBff.F90
@@ -532,7 +532,7 @@ CONTAINS
INTEGER(hsize_t), INTENT(in) :: start ! start record
INTEGER(hsize_t), INTENT(in) :: nrecords ! records
INTEGER(size_t), INTENT(in) :: type_size ! type size
- INTEGER, INTENT(in), DIMENSION(*), TARGET :: buf ! data buffer
+ INTEGER, INTENT(INOUT), DIMENSION(*), TARGET :: buf ! data buffer
INTEGER :: errcode ! error code
INTEGER(size_t) :: namelen ! name length
INTEGER(size_t) :: namelen1
@@ -564,7 +564,7 @@ CONTAINS
INTEGER(hsize_t), INTENT(in) :: start ! start record
INTEGER(hsize_t), INTENT(in) :: nrecords ! records
INTEGER(size_t), INTENT(in) :: type_size ! type size
- CHARACTER(LEN=*), INTENT(in), DIMENSION(*), TARGET :: buf ! data buffer
+ CHARACTER(LEN=*), INTENT(INOUT), DIMENSION(*), TARGET :: buf ! data buffer
INTEGER :: errcode ! error code
INTEGER(size_t) :: namelen ! name length
INTEGER(size_t) :: namelen1 ! name length
@@ -687,7 +687,7 @@ CONTAINS
INTEGER(hsize_t), INTENT(in) :: start ! start record
INTEGER(hsize_t), INTENT(in) :: nrecords ! records
INTEGER(size_t), INTENT(in) :: type_size ! type size
- INTEGER, INTENT(in), DIMENSION(*), TARGET :: buf ! data buffer
+ INTEGER, INTENT(INOUT), DIMENSION(*), TARGET :: buf ! data buffer
INTEGER :: errcode ! error code
INTEGER(size_t) :: namelen ! name length
TYPE(C_PTR) :: f_ptr
@@ -716,7 +716,7 @@ CONTAINS
INTEGER(hsize_t), INTENT(in) :: start ! start record
INTEGER(hsize_t), INTENT(in) :: nrecords ! records
INTEGER(size_t), INTENT(in) :: type_size ! type size
- CHARACTER(LEN=*), INTENT(in), DIMENSION(*), TARGET :: buf ! data buffer
+ CHARACTER(LEN=*), INTENT(INOUT), DIMENSION(*), TARGET :: buf ! data buffer
INTEGER :: errcode ! error code
INTEGER(size_t) :: namelen ! name length
TYPE(C_PTR) :: f_ptr
@@ -939,10 +939,10 @@ CONTAINS
INTEGER(size_t), DIMENSION(nfields), INTENT(inout) :: field_offsets ! field offsets
INTEGER(size_t), INTENT(inout):: type_size ! type size
INTEGER :: errcode ! error code
- INTEGER, OPTIONAL :: maxlen_out ! maximum character len of the field names
+ INTEGER(size_t), OPTIONAL :: maxlen_out ! maximum character len of the field names
INTEGER(size_t) :: namelen ! name length
INTEGER(size_t), DIMENSION(nfields) :: namelen2 ! name lengths
- INTEGER(hsize_t) :: i ! general purpose integer
+ INTEGER(hsize_t) :: i ! general purpose integer
INTEGER(size_t) :: maxlen
INTEGER(size_t) :: c_maxlen_out
diff --git a/hl/fortran/test/CMakeLists.txt b/hl/fortran/test/CMakeLists.txt
index 923989d..c152142 100644
--- a/hl/fortran/test/CMakeLists.txt
+++ b/hl/fortran/test/CMakeLists.txt
@@ -13,18 +13,10 @@ set (H5_TESTS
macro (ADD_H5_FORTRAN_EXE file)
add_executable (hl_f90_${file} ${file}.F90)
- target_include_directories (hl_f90_${file}
- PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
- )
target_compile_options(hl_f90_${file}
PRIVATE
$<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
)
- target_link_libraries (hl_f90_${file}
- PRIVATE
- ${HDF5_HL_F90_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_F90_TEST_LIB_TARGET}
- )
# set_property(TARGET hl_f90_${file} APPEND PROPERTY
# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
# )
@@ -34,35 +26,30 @@ macro (ADD_H5_FORTRAN_EXE file)
if(MSVC)
set_property(TARGET hl_f90_${file} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
endif()
- set_target_properties (hl_f90_${file} PROPERTIES
- LINKER_LANGUAGE Fortran
- FOLDER test/hl/fortran
- Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
- )
- if (BUILD_SHARED_LIBS)
- add_executable (hl_f90_${file}-shared ${file}.F90)
- target_include_directories (hl_f90_${file}-shared
+ if (NOT BUILD_SHARED_LIBS)
+ target_include_directories (hl_f90_${file}
PRIVATE
- "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
)
- target_compile_options(hl_f90_${file}-shared
+ target_link_libraries (hl_f90_${file}
PRIVATE
- $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}>
+ ${HDF5_HL_F90_LIB_TARGET} ${HDF5_F90_LIB_TARGET} ${HDF5_F90_TEST_LIB_TARGET}
+ )
+ set_target_properties (hl_f90_${file} PROPERTIES
+ LINKER_LANGUAGE Fortran
+ FOLDER test/hl/fortran
+ Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/static
+ )
+ else ()
+ target_include_directories (hl_f90_${file}
+ PRIVATE
+ "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_F90_BINARY_DIR};${HDF5_F90_SRC_DIR}/src"
)
- target_link_libraries (hl_f90_${file}-shared
+ target_link_libraries (hl_f90_${file}
PRIVATE
${HDF5_HL_F90_LIBSH_TARGET} ${HDF5_F90_LIBSH_TARGET} ${HDF5_F90_TEST_LIBSH_TARGET}
)
-# set_property(TARGET hl_f90_${file}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE">
-# )
-# set_property(TARGET hl_f90_${file}-shared APPEND PROPERTY
-# LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_LINK_FLAGS}>
-# )
- if(MSVC)
- set_property(TARGET hl_f90_${file}-shared PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}")
- endif()
- set_target_properties (hl_f90_${file}-shared PROPERTIES
+ set_target_properties (hl_f90_${file} PROPERTIES
LINKER_LANGUAGE Fortran
FOLDER test/hl/fortran
Fortran_MODULE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}/shared
@@ -70,8 +57,8 @@ macro (ADD_H5_FORTRAN_EXE file)
endif ()
endmacro ()
-foreach (test ${H5_TESTS})
- ADD_H5_FORTRAN_EXE(${test})
+foreach (h5_test ${H5_TESTS})
+ ADD_H5_FORTRAN_EXE(${h5_test})
endforeach ()
include (CMakeTests.cmake)
diff --git a/hl/fortran/test/CMakeTests.cmake b/hl/fortran/test/CMakeTests.cmake
index 04a49dc..2137d1a 100644
--- a/hl/fortran/test/CMakeTests.cmake
+++ b/hl/fortran/test/CMakeTests.cmake
@@ -16,6 +16,18 @@
##############################################################################
##############################################################################
+set (test_CLEANFILES
+ dsetf1.h5
+ dsetf2.h5
+ dsetf3.h5
+ dsetf4.h5
+ dsetf5.h5
+ f1img.h5
+ f1tab.h5
+ f2tab.h5
+ tstds.h5
+)
+
macro (ADD_H5_FORTRAN_TEST file)
if (HDF5_ENABLE_USING_MEMCHECKER)
add_test (NAME HL_FORTRAN_f90_${file} COMMAND $<TARGET_FILE:hl_f90_${file}>)
@@ -32,61 +44,15 @@ macro (ADD_H5_FORTRAN_TEST file)
)
endif ()
set_tests_properties (HL_FORTRAN_f90_${file} PROPERTIES DEPENDS HL_FORTRAN_test-clear-objects)
- if (BUILD_SHARED_LIBS)
- if (HDF5_ENABLE_USING_MEMCHECKER)
- add_test (NAME HL_FORTRAN_f90_${file}-shared COMMAND $<TARGET_FILE:hl_f90_${file}-shared>)
- else ()
- add_test (NAME HL_FORTRAN_f90_${file}-shared COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:hl_f90_${file}-shared>"
- -D "TEST_ARGS:STRING="
- -D "TEST_EXPECT=0"
- -D "TEST_SKIP_COMPARE=TRUE"
- -D "TEST_OUTPUT=hl_f90_${file}-shared.txt"
- #-D "TEST_REFERENCE=hl_f90_${file}-shared.out"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
- )
- endif ()
- set_tests_properties (HL_FORTRAN_f90_${file}-shared PROPERTIES DEPENDS HL_FORTRAN_test-shared-clear-objects)
- endif ()
endmacro ()
# Remove any output file left over from previous test run
add_test (
NAME HL_FORTRAN_test-clear-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
- dsetf1.h5
- dsetf2.h5
- dsetf3.h5
- dsetf4.h5
- dsetf5.h5
- f1img.h5
- f1tab.h5
- f2tab.h5
- tstds.h5
+ -E remove ${test_CLEANFILES}
)
-if (BUILD_SHARED_LIBS)
- add_test (
- NAME HL_FORTRAN_test-shared-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- dsetf1.h5
- dsetf2.h5
- dsetf3.h5
- dsetf4.h5
- dsetf5.h5
- f1img.h5
- f1tab.h5
- f2tab.h5
- tstds.h5
- )
- set_tests_properties (HL_FORTRAN_test-shared-clear-objects
- PROPERTIES DEPENDS "HL_FORTRAN_f90_tsttable;HL_FORTRAN_f90_tstimage;HL_FORTRAN_f90_tstlite;HL_FORTRAN_f90_tstds"
- )
-endif ()
-
-foreach (test ${H5_TESTS})
- ADD_H5_FORTRAN_TEST(${test})
+foreach (h5_test ${H5_TESTS})
+ ADD_H5_FORTRAN_TEST(${h5_test})
endforeach ()
diff --git a/hl/fortran/test/tstimage.F90 b/hl/fortran/test/tstimage.F90
index d6bd1e2..8586e68 100644
--- a/hl/fortran/test/tstimage.F90
+++ b/hl/fortran/test/tstimage.F90
@@ -62,7 +62,7 @@ character(len=4), parameter :: dsetname2 = "img2" ! dataset name
character(len=15), parameter :: il ="INTERLACE_PIXEL"! dataset name
integer(hid_t) :: file_id ! file identifier
integer(hsize_t), parameter :: width = 500 ! width of image
-integer(hsize_t), parameter :: height = 200 ! height of image
+integer(hsize_t), parameter :: height = 270 ! height of image
integer, parameter :: pal_entries = 9 ! palette number of entries
integer, dimension(width*height) :: buf1 ! data buffer
integer, dimension(width*height) :: bufr1 ! data buffer
diff --git a/hl/fortran/test/tsttable.F90 b/hl/fortran/test/tsttable.F90
index 38cfa86..840d33d 100644
--- a/hl/fortran/test/tsttable.F90
+++ b/hl/fortran/test/tsttable.F90
@@ -93,7 +93,7 @@ SUBROUTINE test_table1()
INTEGER(SIZE_T), DIMENSION(1:nfields) :: field_offsetr ! field offset
INTEGER(SIZE_T), DIMENSION(1:nfields) :: field_sizesr ! field sizes
INTEGER(SIZE_T) :: type_sizeout = 0 ! size of the datatype
- INTEGER :: maxlen = 0 ! max chararter length of a field name
+ INTEGER(SIZE_T) :: maxlen = 0 ! max character length of a field name
INTEGER :: Cs_sizeof_double = H5_SIZEOF_DOUBLE ! C's sizeof double
INTEGER :: SIZEOF_X
LOGICAL :: Exclude_double
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index bf0f6ff..7125403 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -32,21 +32,23 @@ set (HL_PRIVATE_HEADERS
${HDF5_HL_SRC_SOURCE_DIR}/H5LTparse.h
)
-add_library (${HDF5_HL_LIB_TARGET} STATIC ${HL_SOURCES} ${HL_HEADERS} ${HL_PRIVATE_HEADERS})
-target_include_directories(${HDF5_HL_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-TARGET_C_PROPERTIES (${HDF5_HL_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_HL_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
-H5_SET_LIB_OPTIONS (${HDF5_HL_LIB_TARGET} ${HDF5_HL_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_HL_LIB_TARGET} PROPERTIES FOLDER libraries/hl)
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_LIB_TARGET}")
-set (install_targets ${HDF5_HL_LIB_TARGET})
+if (NOT ONLY_SHARED_LIBS)
+ add_library (${HDF5_HL_LIB_TARGET} STATIC ${HL_SOURCES} ${HL_HEADERS} ${HL_PRIVATE_HEADERS})
+ target_include_directories (${HDF5_HL_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ TARGET_C_PROPERTIES (${HDF5_HL_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_HL_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
+ H5_SET_LIB_OPTIONS (${HDF5_HL_LIB_TARGET} ${HDF5_HL_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_HL_LIB_TARGET} PROPERTIES FOLDER libraries/hl)
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_HL_LIB_TARGET}")
+ set (install_targets ${HDF5_HL_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
add_library (${HDF5_HL_LIBSH_TARGET} SHARED ${HL_SOURCES} ${HL_HEADERS} ${HL_PRIVATE_HEADERS})
- target_include_directories(${HDF5_HL_LIBSH_TARGET}
+ target_include_directories (${HDF5_HL_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -80,7 +82,9 @@ if (HDF5_EXPORTED_TARGETS)
if (BUILD_SHARED_LIBS)
INSTALL_TARGET_PDB (${HDF5_HL_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} hllibraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_HL_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hllibraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_HL_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} hllibraries)
+ endif ()
install (
TARGETS
@@ -107,7 +111,9 @@ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
set (_PKG_CONFIG_LIBS_PRIVATE)
-set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_LIB_CORENAME}")
+if (NOT ONLY_SHARED_LIBS)
+ set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_LIB_CORENAME}")
+endif ()
if (BUILD_SHARED_LIBS)
set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_HL_LIB_CORENAME}")
endif ()
diff --git a/hl/src/H5LDprivate.h b/hl/src/H5LDprivate.h
index b52928b..203bcea 100644
--- a/hl/src/H5LDprivate.h
+++ b/hl/src/H5LDprivate.h
@@ -19,9 +19,9 @@
#include "H5LDpublic.h"
/* Store information for a field in <list_of_fields> for a compound data type */
-/*
+/*
* Note: This data structure is used by both H5LD.c and hl/tools/h5watch
- * This declaration is repeated in tools/lib/h5tools_str.c
+ * This declaration is repeated in tools/lib/h5tools_str.c
*/
typedef struct H5LD_memb_t {
size_t tot_offset;
@@ -30,7 +30,10 @@ typedef struct H5LD_memb_t {
char **names;
} H5LD_memb_t;
-/*
+#ifdef __cplusplus
+extern "C" {
+#endif
+/*
* Note that these two private routines are called by hl/tools/h5watch.
* Have considered the following options:
* 1) Repeat the coding in both H5LD.c and h5watch
@@ -40,8 +43,12 @@ typedef struct H5LD_memb_t {
* #2: these two routines are too specific to be made as public routines
* Decide to do #3 at this point of time after some discussion.
*/
-void H5LD_clean_vector(H5LD_memb_t *listv[]);
-int H5LD_construct_vector(char *fields, H5LD_memb_t *listv[], hid_t par_tid);
+H5_HLDLL void H5LD_clean_vector(H5LD_memb_t *listv[]);
+H5_HLDLL int H5LD_construct_vector(char *fields, H5LD_memb_t *listv[], hid_t par_tid);
+
+#ifdef __cplusplus
+}
+#endif
#endif /* end _H5LDprivate_H */
diff --git a/hl/src/H5LT.c b/hl/src/H5LT.c
index 0074d02..3ebca95 100644
--- a/hl/src/H5LT.c
+++ b/hl/src/H5LT.c
@@ -2264,7 +2264,7 @@ out:
*-------------------------------------------------------------------------
*/
static char*
-realloc_and_append(hbool_t _no_user_buf, size_t *len, char *buf, char *str_to_add)
+realloc_and_append(hbool_t _no_user_buf, size_t *len, char *buf, const char *str_to_add)
{
size_t size_str_to_add, size_str;
@@ -2360,7 +2360,6 @@ print_enum(hid_t type, char* str, size_t *str_len, hbool_t no_ubuf, size_t indt)
{
char **name = NULL; /*member names */
unsigned char *value = NULL; /*value array */
- unsigned char *copy = NULL; /*a pointer to value array */
int nmembs; /*number of members */
char tmp_str[TMP_LEN];
int nchars; /*number of output characters */
@@ -2418,17 +2417,15 @@ print_enum(hid_t type, char* str, size_t *str_len, hbool_t no_ubuf, size_t indt)
nchars = HDsnprintf(tmp_str, TMP_LEN, "\"%s\"", name[i]);
if(!(str = realloc_and_append(no_ubuf, str_len, str, tmp_str)))
goto out;
- HDsnprintf(tmp_str, TMP_LEN, "%*s ", MAX(0, 16 - nchars), "");
+ HDmemset(tmp_str, ' ', (size_t)MAX(3, 19 - nchars) + 1);
+ tmp_str[MAX(3, 19 - nchars)] = '\0';
if(!(str = realloc_and_append(no_ubuf, str_len, str, tmp_str)))
goto out;
- /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
- *strangely, unless use another pointer "copy".*/
- copy = value + (size_t)i * dst_size;
if (H5T_SGN_NONE == H5Tget_sign(native))
- HDsnprintf(tmp_str, TMP_LEN, "%u", *((unsigned int*)((void *)copy)));
+ HDsnprintf(tmp_str, TMP_LEN, "%u", *((unsigned int*)(value + (size_t)i * dst_size)));
else
- HDsnprintf(tmp_str, TMP_LEN, "%d", *((int*)((void *)copy)));
+ HDsnprintf(tmp_str, TMP_LEN, "%d", *((int*)(value + (size_t)i * dst_size)));
if(!(str = realloc_and_append(no_ubuf, str_len, str, tmp_str)))
goto out;
@@ -2450,8 +2447,12 @@ print_enum(hid_t type, char* str, size_t *str_len, hbool_t no_ubuf, size_t indt)
out:
if(0 == nmembs) {
- HDsnprintf(tmp_str, TMP_LEN, "\n%*s <empty>", (int)(indt + 4), "");
+ str = realloc_and_append(no_ubuf, str_len, str, "\n");
+ HDassert((indt + 4) < TMP_LEN);
+ HDmemset(tmp_str, ' ', (indt + 4) + 1);
+ tmp_str[(indt + 4)] = '\0';
str = realloc_and_append(no_ubuf, str_len, str, tmp_str);
+ str = realloc_and_append(no_ubuf, str_len, str, " <empty>");
} /* end if */
/* Release resources */
diff --git a/hl/test/CMakeLists.txt b/hl/test/CMakeLists.txt
index 238b5e1..2959c6c 100644
--- a/hl/test/CMakeLists.txt
+++ b/hl/test/CMakeLists.txt
@@ -17,29 +17,26 @@ configure_file (${HDF5_HL_TEST_SOURCE_DIR}/H5srcdir_str.h.in H5srcdir_str.h @ON
# --------------------------------------------------------------------
# Macro used to add a unit test
# --------------------------------------------------------------------
-MACRO (HL_ADD_EXE hl_name)
+macro (HL_ADD_EXE hl_name)
add_executable (hl_${hl_name} ${hl_name}.c)
- target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (hl_${hl_name} STATIC)
- target_link_libraries (hl_${hl_name} PRIVATE
- ${HDF5_HL_LIB_TARGET}
- ${HDF5_TEST_LIB_TARGET}
- ${HDF5_LIB_TARGET}
- )
- set_target_properties (hl_${hl_name} PROPERTIES FOLDER test/hl)
-ENDMACRO ()
-
-MACRO (HL_ADD_SHEXE hl_name)
- add_executable (hl_${hl_name} ${hl_name}.c)
- target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (hl_${hl_name} SHARED)
- target_link_libraries (hl_${hl_name} PRIVATE
- ${HDF5_HL_LIBSH_TARGET}
- ${HDF5_TEST_LIBSH_TARGET}
- ${HDF5_LIBSH_TARGET}
- )
+ target_include_directories (hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (hl_${hl_name} STATIC)
+ target_link_libraries (hl_${hl_name} PRIVATE
+ ${HDF5_HL_LIB_TARGET}
+ ${HDF5_TEST_LIB_TARGET}
+ ${HDF5_LIB_TARGET}
+ )
+ else ()
+ TARGET_C_PROPERTIES (hl_${hl_name} SHARED)
+ target_link_libraries (hl_${hl_name} PRIVATE
+ ${HDF5_HL_LIBSH_TARGET}
+ ${HDF5_TEST_LIBSH_TARGET}
+ ${HDF5_LIBSH_TARGET}
+ )
+ endif ()
set_target_properties (hl_${hl_name} PROPERTIES FOLDER test/hl)
-ENDMACRO ()
+endmacro ()
HL_ADD_EXE (test_lite)
HL_ADD_EXE (test_image)
@@ -52,22 +49,31 @@ HL_ADD_EXE (test_h5do_compat)
# test_packet has two source files
add_executable (hl_test_packet test_packet.c test_packet_vlen.c)
-target_include_directories(hl_test_packet PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (hl_test_packet STATIC)
-target_link_libraries (hl_test_packet PRIVATE
- ${HDF5_HL_LIB_TARGET}
- ${HDF5_TEST_LIB_TARGET}
- ${HDF5_LIB_TARGET}
-)
+target_include_directories (hl_test_packet PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+if (NOT BUILD_SHARED_LIBS)
+ TARGET_C_PROPERTIES (hl_test_packet STATIC)
+ target_link_libraries (hl_test_packet PRIVATE
+ ${HDF5_HL_LIB_TARGET}
+ ${HDF5_TEST_LIB_TARGET}
+ ${HDF5_LIB_TARGET}
+ )
+else ()
+ TARGET_C_PROPERTIES (hl_test_packet SHARED)
+ target_link_libraries (hl_test_packet PRIVATE
+ ${HDF5_HL_LIBSH_TARGET}
+ ${HDF5_TEST_LIBSH_TARGET}
+ ${HDF5_LIBSH_TARGET}
+ )
+endif ()
set_target_properties (hl_test_packet PROPERTIES FOLDER test/hl)
# --------------------------------------------------------------------
# This executable is used to generate test files for the test_ds test.
# It should only be run during development when new test files are needed
# --------------------------------------------------------------------
-if (HDF5_BUILD_GENERATORS)
+if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS)
add_executable (hl_gen_test_ds gen_test_ds.c)
- target_include_directories(hl_gen_test_ds PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (hl_gen_test_ds PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
TARGET_C_PROPERTIES (hl_gen_test_ds STATIC)
target_link_libraries (hl_gen_test_ds PRIVATE
${HDF5_HL_LIB_TARGET}
@@ -77,7 +83,7 @@ if (HDF5_BUILD_GENERATORS)
set_target_properties (hl_gen_test_ds PROPERTIES FOLDER test/hl/gen)
add_executable (hl_gen_test_ld gen_test_ld.c)
- target_include_directories(hl_gen_test_ld PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (hl_gen_test_ld PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
TARGET_C_PROPERTIES (hl_gen_test_ld STATIC)
target_link_libraries (hl_gen_test_ld PRIVATE
${HDF5_HL_LIB_TARGET}
diff --git a/hl/test/CMakeTests.cmake b/hl/test/CMakeTests.cmake
index 4e945bc..477a165 100644
--- a/hl/test/CMakeTests.cmake
+++ b/hl/test/CMakeTests.cmake
@@ -61,7 +61,7 @@ macro (HL_ADD_TEST hl_name)
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (HL_${hl_name} PROPERTIES DEPENDS ${last_test}
ENVIRONMENT "srcdir=${HDF5_HL_TEST_BINARY_DIR}"
WORKING_DIRECTORY ${HDF5_HL_TEST_BINARY_DIR}
@@ -104,7 +104,7 @@ add_test (
testfl_packet_table_vlen.h5
test_table.h5
)
-if (NOT "${last_test}" STREQUAL "")
+if (last_test)
set_tests_properties (HL_test-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "HL_test-clear-objects")
diff --git a/hl/test/test_ds.c b/hl/test/test_ds.c
index 95178fc..d7af9e9 100644
--- a/hl/test/test_ds.c
+++ b/hl/test/test_ds.c
@@ -1138,7 +1138,7 @@ static int test_detachscales(void)
int rank3 = 3;
hsize_t dims[] = {1,2,3}; /*some bogus numbers, not important for the test*/
int *buf = NULL;
- char dname[10];
+ char dname[16];
int i;
/* This tests creates two three dimensional datasets; then it creates
diff --git a/hl/tools/gif2h5/CMakeLists.txt b/hl/tools/gif2h5/CMakeLists.txt
index a27ab18..14a5f5f 100644
--- a/hl/tools/gif2h5/CMakeLists.txt
+++ b/hl/tools/gif2h5/CMakeLists.txt
@@ -14,24 +14,58 @@ set (GIF2H5_SOURCES
)
#-- Add gif2hdf5 program
-add_executable (gif2h5 ${GIF2H5_SOURCES})
-target_include_directories(gif2h5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (gif2h5 STATIC)
-target_link_libraries (gif2h5 PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
-set_target_properties (gif2h5 PROPERTIES FOLDER tools/hl)
-set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};gif2h5")
+if (NOT ONLY_SHARED_LIBS)
+ add_executable (gif2h5 ${GIF2H5_SOURCES})
+ target_include_directories (gif2h5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (gif2h5 STATIC)
+ target_link_libraries (gif2h5 PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ set_target_properties (gif2h5 PROPERTIES FOLDER tools/hl)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};gif2h5")
+ set (H5_DEP_EXECUTABLES
+ gif2h5
+ )
+endif ()
+
+if (BUILD_SHARED_LIBS)
+ add_executable (gif2h5-shared ${GIF2H5_SOURCES})
+ target_include_directories (gif2h5-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (gif2h5-shared SHARED)
+ target_link_libraries (gif2h5-shared PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} ${HDF5_TOOLS_LIBSH_TARGET})
+ set_target_properties (gif2h5-shared PROPERTIES FOLDER tools/hl)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};gif2h5-shared")
+ set (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES}
+ gif2h5-shared
+ )
+endif ()
#-- Add h52gif program
set (hdf2gif_SOURCES
${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/hdf2gif.c
${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/hdfgifwr.c
)
-add_executable (h52gif ${hdf2gif_SOURCES})
-target_include_directories(h52gif PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (h52gif STATIC)
-target_link_libraries (h52gif PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
-set_target_properties (h52gif PROPERTIES FOLDER tools/hl)
-set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h52gif")
+if (NOT ONLY_SHARED_LIBS)
+ add_executable (h52gif ${hdf2gif_SOURCES})
+ target_include_directories (h52gif PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (h52gif STATIC)
+ target_link_libraries (h52gif PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ set_target_properties (h52gif PROPERTIES FOLDER tools/hl)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h52gif")
+ set (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES}
+ h52gif
+ )
+endif ()
+
+if (BUILD_SHARED_LIBS)
+ add_executable (h52gif-shared ${hdf2gif_SOURCES})
+ target_include_directories (h52gif-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (h52gif-shared SHARED)
+ target_link_libraries (h52gif-shared PRIVATE ${HDF5_HL_LIBSH_TARGET} PRIVATE ${HDF5_LIBSH_TARGET} ${HDF5_TOOLS_LIBSH_TARGET})
+ set_target_properties (h52gif-shared PROPERTIES FOLDER tools/hl)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h52gif-shared")
+ set (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES}
+ h52gif-shared
+ )
+endif ()
if (BUILD_TESTING)
# --------------------------------------------------------------------
@@ -39,9 +73,9 @@ if (BUILD_TESTING)
# used in the CMake Build system as we rely on the test files that are
# shipped with HDF5 source archives
# --------------------------------------------------------------------
- if (HDF5_BUILD_GENERATORS)
+ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS)
add_executable (hl_h52gifgentest ${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/h52gifgentst.c)
- target_include_directories(hl_h52gifgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (hl_h52gifgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
TARGET_C_PROPERTIES (hl_h52gifgentest STATIC)
target_link_libraries (hl_h52gifgentest PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
set_target_properties (hl_h52gifgentest PROPERTIES FOLDER generator/tools/hl)
@@ -58,8 +92,7 @@ endif ()
if (HDF5_EXPORTED_TARGETS)
install (
TARGETS
- gif2h5
- h52gif
+ ${H5_DEP_EXECUTABLES}
EXPORT
${HDF5_EXPORTED_TARGETS}
RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT hltoolsapplications
diff --git a/hl/tools/gif2h5/CMakeTests.cmake b/hl/tools/gif2h5/CMakeTests.cmake
index 61c004e..1cc989c 100644
--- a/hl/tools/gif2h5/CMakeTests.cmake
+++ b/hl/tools/gif2h5/CMakeTests.cmake
@@ -27,6 +27,12 @@ HDFTEST_COPY_FILE("${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/testfiles/h52giftst.h5" "$
HDFTEST_COPY_FILE("${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/testfiles/ex_image2.h5" "${PROJECT_BINARY_DIR}/testfiles/ex_image2.h5" "gif2h5_files")
add_custom_target(gif2h5_files ALL COMMENT "Copying files needed by gif2h5 tests" DEPENDS ${gif2h5_files_list})
+if (NOT BUILD_SHARED_LIBS)
+ set (tgt_ext "")
+else ()
+ set (tgt_ext "-shared")
+endif ()
+
# Remove any output file left over from previous test run
add_test (
NAME HL_TOOLS-clear-objects
@@ -38,19 +44,19 @@ add_test (
image24.gif
)
-add_test (NAME HL_TOOLS_gif2h5 COMMAND $<TARGET_FILE:gif2h5> testfiles/image1.gif image1.h5)
+add_test (NAME HL_TOOLS_gif2h5 COMMAND $<TARGET_FILE:gif2h5${tgt_ext}> testfiles/image1.gif image1.h5)
set_tests_properties (HL_TOOLS_gif2h5 PROPERTIES DEPENDS HL_TOOLS-clear-objects)
-add_test (NAME HL_TOOLS_h52gif COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image1.gif -i image)
+add_test (NAME HL_TOOLS_h52gif COMMAND $<TARGET_FILE:h52gif${tgt_ext}> testfiles/h52giftst.h5 image1.gif -i image)
set_tests_properties (HL_TOOLS_h52gif PROPERTIES DEPENDS HL_TOOLS-clear-objects)
-add_test (NAME HL_TOOLS_h52gif_none COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image.gif -i nosuch_image)
+add_test (NAME HL_TOOLS_h52gif_none COMMAND $<TARGET_FILE:h52gif${tgt_ext}> testfiles/h52giftst.h5 image.gif -i nosuch_image)
set_tests_properties (HL_TOOLS_h52gif_none PROPERTIES WILL_FAIL "true")
set_tests_properties (HL_TOOLS_h52gif_none PROPERTIES DEPENDS HL_TOOLS-clear-objects)
-#add_test (NAME HL_TOOLS_h52gifpal COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image.gif -i palette)
+#add_test (NAME HL_TOOLS_h52gifpal COMMAND $<TARGET_FILE:h52gif${tgt_ext}> testfiles/h52giftst.h5 image.gif -i palette)
#set_tests_properties (HL_TOOLS_h52gifpal PROPERTIES WILL_FAIL "true")
-add_test (NAME HL_TOOLS_h52gif24bits COMMAND $<TARGET_FILE:h52gif> testfiles/ex_image2.h5 image24.gif -i image24bitpixel)
+add_test (NAME HL_TOOLS_h52gif24bits COMMAND $<TARGET_FILE:h52gif${tgt_ext}> testfiles/ex_image2.h5 image24.gif -i image24bitpixel)
set_tests_properties (HL_TOOLS_h52gif24bits PROPERTIES WILL_FAIL "true")
set_tests_properties (HL_TOOLS_h52gif24bits PROPERTIES DEPENDS HL_TOOLS-clear-objects)
diff --git a/hl/tools/gif2h5/Makefile.am b/hl/tools/gif2h5/Makefile.am
index d30d66a..9ffde58 100644
--- a/hl/tools/gif2h5/Makefile.am
+++ b/hl/tools/gif2h5/Makefile.am
@@ -23,11 +23,7 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/sr
# These are our main targets, the tools
-TEST_SCRIPT=h52giftest.sh
-check_SCRIPTS=$(TEST_SCRIPT)
-
bin_PROGRAMS=gif2h5 h52gif
-noinst_PROGRAMS=h52gifgentst
# Add h52gif and gif2h5 specific linker flags here
h52gif_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
@@ -37,12 +33,18 @@ gif2h5_SOURCES=gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c
h52gif_SOURCES=hdf2gif.c hdfgifwr.c
-h52gifgentst_SOURCES=h52gifgentst.c
# Programs all depend on the hdf5 library, the tools library, and the HL
# library.
LDADD=$(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5)
+if BUILD_TESTS_CONDITIONAL
+ TEST_SCRIPT=h52giftest.sh
+ check_SCRIPTS=$(TEST_SCRIPT)
+ noinst_PROGRAMS=h52gifgentst
+ h52gifgentst_SOURCES=h52gifgentst.c
+endif
+
CHECK_CLEANFILES+=*.h5
CHECK_CLEANFILES+=*.gif
diff --git a/hl/tools/h5watch/CMakeLists.txt b/hl/tools/h5watch/CMakeLists.txt
index 1d1c341..b3d65f7 100644
--- a/hl/tools/h5watch/CMakeLists.txt
+++ b/hl/tools/h5watch/CMakeLists.txt
@@ -9,11 +9,22 @@ set (H5WATCH_SOURCES
)
#-- Add h5watch program
-add_executable (h5watch ${H5WATCH_SOURCES})
-target_include_directories(h5watch PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-TARGET_C_PROPERTIES (h5watch STATIC)
-target_link_libraries (h5watch PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
-set_target_properties (h5watch PROPERTIES FOLDER tools/hl)
+if (NOT ONLY_SHARED_LIBS)
+ add_executable (h5watch ${H5WATCH_SOURCES})
+ target_include_directories (h5watch PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (h5watch STATIC)
+ target_link_libraries (h5watch PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ set_target_properties (h5watch PROPERTIES FOLDER tools/hl)
+ set (H5_DEP_EXECUTABLES h5watch)
+endif ()
+if (BUILD_SHARED_LIBS)
+ add_executable (h5watch-shared ${H5WATCH_SOURCES})
+ target_include_directories (h5watch-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ TARGET_C_PROPERTIES (h5watch-shared SHARED)
+ target_link_libraries (h5watch-shared PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} ${HDF5_TOOLS_LIBSH_TARGET})
+ set_target_properties (h5watch-shared PROPERTIES FOLDER tools/hl)
+ set (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} h5watch-shared)
+endif ()
if (BUILD_TESTING)
#-- Add swmr_check_compat_vfd program
@@ -21,9 +32,14 @@ if (BUILD_TESTING)
${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/swmr_check_compat_vfd.c
)
add_executable (hl_swmr_check_compat_vfd ${hl_swmr_check_compat_vfd_SOURCES})
- target_include_directories(hl_swmr_check_compat_vfd PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (hl_swmr_check_compat_vfd STATIC)
- target_link_libraries (hl_swmr_check_compat_vfd PRIVATE ${HDF5_LIB_TARGET})
+ target_include_directories (hl_swmr_check_compat_vfd PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (hl_swmr_check_compat_vfd STATIC)
+ target_link_libraries (hl_swmr_check_compat_vfd PRIVATE ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (hl_swmr_check_compat_vfd SHARED)
+ target_link_libraries (hl_swmr_check_compat_vfd PRIVATE ${HDF5_LIBSH_TARGET})
+ endif ()
set_target_properties (hl_swmr_check_compat_vfd PROPERTIES FOLDER tools/hl)
#-- Add extend_dset program
@@ -31,15 +47,25 @@ if (BUILD_TESTING)
${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/extend_dset.c
)
add_executable (extend_dset ${extend_dset_SOURCES})
- target_include_directories(extend_dset PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (extend_dset STATIC)
- target_link_libraries (extend_dset PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ target_include_directories (extend_dset PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (extend_dset STATIC)
+ target_link_libraries (extend_dset PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (extend_dset SHARED)
+ target_link_libraries (extend_dset PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} ${HDF5_TOOLS_LIBSH_TARGET})
+ endif ()
set_target_properties (extend_dset PROPERTIES FOLDER tools/hl)
add_executable (h5watchgentest ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/h5watchgentest.c)
- target_include_directories(h5watchgentest PRIVATE "${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- TARGET_C_PROPERTIES (h5watchgentest STATIC)
- target_link_libraries (h5watchgentest PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
+ target_include_directories (h5watchgentest PRIVATE "${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (h5watchgentest STATIC)
+ target_link_libraries (h5watchgentest PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (h5watchgentest SHARED)
+ target_link_libraries (h5watchgentest PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
set_target_properties (h5watchgentest PROPERTIES FOLDER generator/tools/hl)
include (CMakeTests.cmake)
@@ -51,7 +77,7 @@ endif ()
if (HDF5_EXPORTED_TARGETS)
install (
TARGETS
- h5watch
+ ${H5_DEP_EXECUTABLES}
EXPORT
${HDF5_EXPORTED_TARGETS}
RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT hltoolsapplications
diff --git a/hl/tools/h5watch/CMakeTests.cmake b/hl/tools/h5watch/CMakeTests.cmake
index 13d5e47..fba8484 100644
--- a/hl/tools/h5watch/CMakeTests.cmake
+++ b/hl/tools/h5watch/CMakeTests.cmake
@@ -68,12 +68,18 @@ add_custom_target(H5WATCH_files ALL COMMENT "Copying files needed by H5WATCH tes
##############################################################################
##############################################################################
+ if (NOT BUILD_SHARED_LIBS)
+ set (tgt_ext "")
+ else ()
+ set (tgt_ext "-shared")
+ endif ()
+
macro (ADD_H5_TEST resultfile resultcode)
if (NOT HDF5_ENABLE_USING_MEMCHECKER)
add_test (
NAME H5WATCH_ARGS-h5watch-${resultfile}
COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:h5watch>"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5watch${tgt_ext}>"
-D "TEST_ARGS:STRING=${ARGN}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles"
-D "TEST_OUTPUT=${resultfile}.out"
@@ -91,7 +97,7 @@ add_custom_target(H5WATCH_files ALL COMMENT "Copying files needed by H5WATCH tes
add_test (
NAME H5WATCH_ARGS-h5watch-${resultfile}
COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:h5watch>"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5watch${tgt_ext}>"
-D "TEST_ARGS:STRING=${ARGN}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles"
-D "TEST_OUTPUT=${resultfile}.out"
@@ -110,14 +116,13 @@ add_custom_target(H5WATCH_files ALL COMMENT "Copying files needed by H5WATCH tes
add_test (
NAME H5WATCH-${resultfile}-clear-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
- ${resultfile}.h5
+ -E remove ${resultfile}.h5
)
set_tests_properties (H5WATCH-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
add_test (
NAME H5WATCH-${resultfile}
COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:h5watch>"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5watch${tgt_ext}>"
-D "TEST_ARGS:STRING=${ARGN}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles"
-D "TEST_OUTPUT=${resultfile}.out"
@@ -147,7 +152,7 @@ if (NOT SWMR_INCOMPAT)
-E remove
WATCH.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (H5WATCH-clearall-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "H5WATCH-clearall-objects")
diff --git a/hl/tools/h5watch/Makefile.am b/hl/tools/h5watch/Makefile.am
index c60fceb..0bf265e 100644
--- a/hl/tools/h5watch/Makefile.am
+++ b/hl/tools/h5watch/Makefile.am
@@ -19,15 +19,12 @@
include $(top_srcdir)/config/commence.am
# Include src and tools/lib directories
-AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src -I$(top_srcdir)/hl/test
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src
# These are our main targets, the tools
-TEST_SCRIPT=testh5watch.sh
-check_SCRIPTS=$(TEST_SCRIPT)
-SCRIPT_DEPEND=swmr_check_compat_vfd$(EXEEXT) extend_dset$(EXEEXT) h5watch$(EXEEXT)
bin_PROGRAMS=h5watch
-noinst_PROGRAMS=swmr_check_compat_vfd h5watchgentest extend_dset
+noinst_PROGRAMS=swmr_check_compat_vfd
# Add h5watch specific linker flags here
h5watch_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
@@ -36,13 +33,19 @@ h5watch_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# library.
LDADD=$(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5)
-# Add extend_dset specific preprocessor flags here
-# (add the main test subdirectory to the include file path)
-extend_dset_CPPFLAGS=$(AM_CPPFLAGS) -I$(top_srcdir)/test
-# Add extend_dset specific library flags here
-# (add the main test library to the list of libraries)
-extend_dset_LDADD=$(LDADD) $(LIBH5TEST) $(LIBHDF5)
-
+if BUILD_TESTS_CONDITIONAL
+ AM_CPPFLAGS+=-I$(top_srcdir)/hl/test
+ TEST_SCRIPT=testh5watch.sh
+ check_SCRIPTS=$(TEST_SCRIPT)
+ SCRIPT_DEPEND=swmr_check_compat_vfd$(EXEEXT) extend_dset$(EXEEXT) h5watch$(EXEEXT)
+ noinst_PROGRAMS+=h5watchgentest extend_dset
+ # Add extend_dset specific preprocessor flags here
+ # (add the main test subdirectory to the include file path)
+ extend_dset_CPPFLAGS=$(AM_CPPFLAGS) -I$(top_srcdir)/test
+ # Add extend_dset specific library flags here
+ # (add the main test library to the list of libraries)
+ extend_dset_LDADD=$(LDADD) $(LIBH5TEST) $(LIBHDF5)
+endif
#
CHECK_CLEANFILES+=*.h5
DISTCLEANFILES=testh5watch.sh
diff --git a/java/CMakeLists.txt b/java/CMakeLists.txt
index ffc3b94..528b24f 100644
--- a/java/CMakeLists.txt
+++ b/java/CMakeLists.txt
@@ -11,8 +11,8 @@ include (${HDF_RESOURCES_DIR}/UseJava.cmake)
message (STATUS "JAVA: JAVA_HOME=$ENV{JAVA_HOME} JAVA_ROOT=$ENV{JAVA_ROOT}")
find_package (JNI)
-message ("JNI_LIBRARIES=${JNI_LIBRARIES}")
-message ("JNI_INCLUDE_DIRS=${JNI_INCLUDE_DIRS}")
+message (STATUS "JNI_LIBRARIES=${JNI_LIBRARIES}")
+message (STATUS "JNI_INCLUDE_DIRS=${JNI_INCLUDE_DIRS}")
if (WIN32)
diff --git a/java/Makefile.am b/java/Makefile.am
index 7d0e2f0..51398f2 100644
--- a/java/Makefile.am
+++ b/java/Makefile.am
@@ -23,13 +23,26 @@
include $(top_srcdir)/config/commence.am
+if BUILD_TESTS_CONDITIONAL
+ TESTSERIAL_DIR =test
+ TESTEXAMPLES_DIR =examples
+else
+ TESTSERIAL_DIR=
+ TESTEXAMPLES_DIR=
+endif
+
## Only recurse into subdirectories if the Java (JNI) interface is enabled.
if BUILD_JAVA_CONDITIONAL
# Mark this directory as part of the JNI API
JAVA_API=yes
-SUBDIRS=src test examples
+SUBDIRS=src $(TESTSERIAL_DIR) $(TESTEXAMPLES_DIR)
+
+# Test with just the native connector, with a single pass-through connector
+# and with a doubly-stacked pass-through.
+VOL_LIST = native "pass_through under_vol=0;under_info={}" \
+ "pass_through under_vol=505;under_info={under_vol=0;under_info={}}"
endif
diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt
index 1375372..c327c86 100644
--- a/java/examples/datasets/CMakeLists.txt
+++ b/java/examples/datasets/CMakeLists.txt
@@ -71,7 +71,7 @@ foreach (HDFJAVA_JAR ${CMAKE_JAVA_INCLUDE_PATH})
set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${HDFJAVA_JAR}")
endforeach ()
-MACRO (ADD_H5_TEST resultfile resultcode)
+macro (ADD_H5_TEST resultfile resultcode)
set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=$<TARGET_PROPERTY:${HDF5_JAVA_JNI_LIB_TARGET},OUTPUT_NAME$<$<CONFIG:Debug>:_DEBUG>>;")
add_test (
NAME JAVA_datasets-${resultfile}
@@ -87,16 +87,15 @@ MACRO (ADD_H5_TEST resultfile resultcode)
-D "TEST_REFERENCE=datasets/${resultfile}.txt"
-P "${HDF_RESOURCES_DIR}/jrunTest.cmake"
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_datasets-${resultfile} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_datasets-${resultfile}")
-ENDMACRO ()
+endmacro ()
if (BUILD_TESTING)
-
foreach (example ${HDF_JAVA_EXAMPLES})
- if ("${example}" STREQUAL "H5Ex_D_External")
+ if (example STREQUAL "H5Ex_D_External")
add_test (
NAME JAVA_datasets-${example}-clear-objects
COMMAND ${CMAKE_COMMAND}
@@ -112,7 +111,7 @@ if (BUILD_TESTING)
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_datasets-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
add_test (
diff --git a/java/examples/datatypes/CMakeLists.txt b/java/examples/datatypes/CMakeLists.txt
index 4a8b2a4..0fef370 100644
--- a/java/examples/datatypes/CMakeLists.txt
+++ b/java/examples/datatypes/CMakeLists.txt
@@ -72,7 +72,7 @@ MACRO (ADD_H5_TEST resultfile resultcode)
-D "TEST_REFERENCE=datatypes/${resultfile}.txt"
-P "${HDF_RESOURCES_DIR}/jrunTest.cmake"
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_datatypes-${resultfile} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_datatypes-${resultfile}")
@@ -86,7 +86,7 @@ if (BUILD_TESTING)
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_datatypes-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
add_test (
diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt
index 2c5d33b..b31a186 100644
--- a/java/examples/groups/CMakeLists.txt
+++ b/java/examples/groups/CMakeLists.txt
@@ -55,7 +55,7 @@ foreach (h5_file ${HDF_JAVA_TEST_FILES})
endforeach ()
add_custom_target(H5Ex_G_Visit_files ALL COMMENT "Copying files needed by H5Ex_G_Visit tests" DEPENDS ${H5Ex_G_Visit_files_list})
-MACRO (ADD_H5_TEST resultfile resultcode)
+macro (ADD_H5_TEST resultfile resultcode)
set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=$<TARGET_PROPERTY:${HDF5_JAVA_JNI_LIB_TARGET},OUTPUT_NAME$<$<CONFIG:Debug>:_DEBUG>>;")
add_test (
NAME JAVA_groups-${resultfile}
@@ -71,16 +71,16 @@ MACRO (ADD_H5_TEST resultfile resultcode)
-D "TEST_REFERENCE=groups/${resultfile}.txt"
-P "${HDF_RESOURCES_DIR}/jrunTest.cmake"
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_groups-${resultfile} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_groups-${resultfile}")
-ENDMACRO ()
+endmacro ()
if (BUILD_TESTING)
foreach (example ${HDF_JAVA_EXAMPLES})
- if (NOT "${example}" STREQUAL "H5Ex_G_Iterate" AND NOT "${example}" STREQUAL "H5Ex_G_Visit")
- if ("${example}" STREQUAL "H5Ex_G_Compact")
+ if (NOT example STREQUAL "H5Ex_G_Iterate" AND NOT example STREQUAL "H5Ex_G_Visit")
+ if (example STREQUAL "H5Ex_G_Compact")
add_test (
NAME JAVA_groups-${example}-clear-h5s
COMMAND ${CMAKE_COMMAND}
@@ -96,7 +96,7 @@ if (BUILD_TESTING)
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
)
endif ()
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_groups-${example}-clear-h5s PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_groups-${example}-clear-h5s")
@@ -108,7 +108,7 @@ if (BUILD_TESTING)
${HDFJAVA_EXAMPLES_SOURCE_DIR}/testfiles/examples.groups.${example}.txt
${HDFJAVA_EXAMPLES_GROUPS_BINARY_DIR}/${example}.txt
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_groups-${example}-copy-objects PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_groups-${example}-copy-objects")
diff --git a/java/examples/intro/CMakeLists.txt b/java/examples/intro/CMakeLists.txt
index 8d56b86..8c94a09 100644
--- a/java/examples/intro/CMakeLists.txt
+++ b/java/examples/intro/CMakeLists.txt
@@ -73,7 +73,7 @@ MACRO (ADD_H5_TEST resultfile resultcode)
-D "TEST_REFERENCE=intro/${resultfile}.txt"
-P "${HDF_RESOURCES_DIR}/jrunTest.cmake"
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_intro-${resultfile} PROPERTIES DEPENDS ${last_test})
endif ()
set (last_test "JAVA_intro-${resultfile}")
@@ -88,7 +88,7 @@ if (BUILD_TESTING)
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
)
- if (NOT "${last_test}" STREQUAL "")
+ if (last_test)
set_tests_properties (JAVA_intro-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
endif ()
add_test (
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 19ca83b..a1a8ede 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -212,7 +212,7 @@ import hdf.hdf5lib.structs.H5O_info_t;
* exception handlers to print out the HDF-5 error stack.
* <hr>
*
- * @version HDF5 1.11.4 <BR>
+ * @version HDF5 1.11.6 <BR>
* <b>See also: <a href ="./hdf.hdf5lib.HDFArray.html"> hdf.hdf5lib.HDFArray</a> </b><BR>
* <a href ="./hdf.hdf5lib.HDF5Constants.html"> hdf.hdf5lib.HDF5Constants</a><BR>
* <a href ="./hdf.hdf5lib.HDF5CDataTypes.html"> hdf.hdf5lib.HDF5CDataTypes</a><BR>
@@ -235,7 +235,7 @@ public class H5 implements java.io.Serializable {
*
* Make sure to update the versions number when a different library is used.
*/
- public final static int LIB_VERSION[] = { 1, 11, 4 };
+ public final static int LIB_VERSION[] = { 1, 11, 6 };
public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
@@ -2968,6 +2968,19 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Fget_intent(long file_id) throws HDF5LibraryException;
/**
+ * H5Fget_fileno retrieves the "file number" for an open file.
+ *
+ * @param file_id
+ * IN: File identifier for a currently-open HDF5 file
+ *
+ * @return the unique file number for the file.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Fget_fileno(long file_id) throws HDF5LibraryException;
+
+ /**
* H5Fget_mdc_hit_rate queries the metadata cache of the target file to obtain its hit rate (cache hits / (cache
* hits + cache misses)) since the last time hit rate statistics were reset.
*
@@ -3233,6 +3246,8 @@ public class H5 implements java.io.Serializable {
* @param file_id
* IN: Identifier of the target file.
*
+ * @return true if the file-level is set to create minimized dataset object headers, false if not.
+ *
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
@@ -6998,6 +7013,8 @@ public class H5 implements java.io.Serializable {
* @param dcpl_id
* IN: Dataset creation property list
*
+ * @return true if the given dcpl is set to create minimized dataset object headers, false if not.
+ *
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index a0c2ed6..cb5ed22 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -121,6 +121,7 @@ public class HDF5Constants {
public static final long H5E_CANTDEC = H5E_CANTDEC();
public static final long H5E_CANTDECODE = H5E_CANTDECODE();
public static final long H5E_CANTDELETE = H5E_CANTDELETE();
+ public static final long H5E_CANTDELETEFILE = H5E_CANTDELETEFILE();
public static final long H5E_CANTENCODE = H5E_CANTENCODE();
public static final long H5E_CANTFLUSH = H5E_CANTFLUSH();
public static final long H5E_CANTFREE = H5E_CANTFREE();
@@ -216,6 +217,7 @@ public class HDF5Constants {
public static final int H5F_LIBVER_EARLIEST = H5F_LIBVER_EARLIEST();
public static final int H5F_LIBVER_V18 = H5F_LIBVER_V18();
public static final int H5F_LIBVER_V110 = H5F_LIBVER_V110();
+ public static final int H5F_LIBVER_V112 = H5F_LIBVER_V112();
public static final int H5F_LIBVER_NBOUNDS = H5F_LIBVER_NBOUNDS();
public static final int H5F_LIBVER_LATEST = H5F_LIBVER_LATEST();
public static final int H5F_OBJ_ALL = H5F_OBJ_ALL();
@@ -373,6 +375,7 @@ public class HDF5Constants {
public static final long H5P_OBJECT_COPY = H5P_OBJECT_COPY();
public static final long H5P_LINK_CREATE = H5P_LINK_CREATE();
public static final long H5P_LINK_ACCESS = H5P_LINK_ACCESS();
+ public static final long H5P_VOL_INITIALIZE = H5P_VOL_INITIALIZE();
public static final long H5P_FILE_CREATE_DEFAULT = H5P_FILE_CREATE_DEFAULT();
public static final long H5P_FILE_ACCESS_DEFAULT = H5P_FILE_ACCESS_DEFAULT();
public static final long H5P_DATASET_CREATE_DEFAULT = H5P_DATASET_CREATE_DEFAULT();
@@ -388,6 +391,7 @@ public class HDF5Constants {
public static final long H5P_OBJECT_COPY_DEFAULT = H5P_OBJECT_COPY_DEFAULT();
public static final long H5P_LINK_CREATE_DEFAULT = H5P_LINK_CREATE_DEFAULT();
public static final long H5P_LINK_ACCESS_DEFAULT = H5P_LINK_ACCESS_DEFAULT();
+ public static final long H5P_VOL_INITIALIZE_DEFAULT = H5P_VOL_INITIALIZE_DEFAULT();
public static final int H5P_CRT_ORDER_TRACKED = H5P_CRT_ORDER_TRACKED();
public static final int H5P_CRT_ORDER_INDEXED = H5P_CRT_ORDER_INDEXED();
public static final long H5P_DEFAULT = H5P_DEFAULT();
@@ -860,6 +864,8 @@ public class HDF5Constants {
private static native final long H5E_CANTDELETE();
+ private static native final long H5E_CANTDELETEFILE();
+
private static native final long H5E_CANTENCODE();
private static native final long H5E_CANTFLUSH();
@@ -1049,6 +1055,8 @@ public class HDF5Constants {
private static native final int H5F_LIBVER_V110();
+ private static native final int H5F_LIBVER_V112();
+
private static native final int H5F_LIBVER_NBOUNDS();
private static native final int H5F_LIBVER_LATEST();
@@ -1349,6 +1357,8 @@ public class HDF5Constants {
private static native final long H5P_LINK_ACCESS();
+ private static native final long H5P_VOL_INITIALIZE();
+
private static native final long H5P_FILE_CREATE_DEFAULT();
private static native final long H5P_FILE_ACCESS_DEFAULT();
@@ -1379,6 +1389,8 @@ public class HDF5Constants {
private static native final long H5P_LINK_ACCESS_DEFAULT();
+ private static native final long H5P_VOL_INITIALIZE_DEFAULT();
+
private static native final int H5P_CRT_ORDER_TRACKED();
private static native final int H5P_CRT_ORDER_INDEXED();
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
index 3a1361a..54acbdd 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
@@ -171,6 +171,9 @@ public class HDF5LibraryException extends HDF5Exception {
else if (err_code == HDF5Constants.H5E_MOUNT) {
return "file mount error";
}
+ else if (err_code == HDF5Constants.H5E_CANTDELETEFILE) {
+ return "Unable to delete file";
+ }
else if (err_code == HDF5Constants.H5E_SEEKERROR) {
return "seek failed";
}
@@ -262,7 +265,7 @@ public class HDF5LibraryException extends HDF5Exception {
return "unrecognized message";
}
else if (err_code == HDF5Constants.H5E_CANTDELETE) {
- return " Can't delete message";
+ return "Can't delete message";
}
else if (err_code == HDF5Constants.H5E_CANTOPENOBJ) {
return "Can't open object";
diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt
index 00c2b34..a05921b 100644
--- a/java/src/jni/CMakeLists.txt
+++ b/java/src/jni/CMakeLists.txt
@@ -14,6 +14,19 @@ set (HDF5_JAVA_JNI_CSRCS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.c
@@ -36,6 +49,19 @@ set (HDF5_JAVA_JNI_CHDRS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.h
@@ -50,7 +76,7 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)
########### JNI libraries always must be built shared ###############
add_library (${HDF5_JAVA_JNI_LIB_TARGET} SHARED ${HDF5_JAVA_JNI_CSRCS} ${HDF5_JAVA_JNI_CHDRS})
-target_include_directories(${HDF5_JAVA_JNI_LIB_TARGET}
+target_include_directories (${HDF5_JAVA_JNI_LIB_TARGET}
PRIVATE "${HDF5_BINARY_DIR};${HDF5_JAVA_JNI_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
)
TARGET_C_PROPERTIES (${HDF5_JAVA_JNI_LIB_TARGET} SHARED)
diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am
index 370b08b..1ec9b94 100644
--- a/java/src/jni/Makefile.am
+++ b/java/src/jni/Makefile.am
@@ -34,7 +34,10 @@ libhdf5_java_la_LDFLAGS = -avoid-version -shared -export-dynamic -version-info $
# Source files for the library
libhdf5_java_la_SOURCES=exceptionImp.c h5Constants.c nativeData.c h5util.c h5Imp.c \
h5aImp.c h5dImp.c h5eImp.c h5fImp.c h5gImp.c h5iImp.c h5lImp.c h5oImp.c \
- h5pImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c h5vlImp.c h5zImp.c
+ h5pImp.c h5pACPLImp.c h5pDAPLImp.c h5pDCPLImp.c h5pDXPLImp.c \
+ h5pFAPLImp.c h5pFCPLImp.c h5pGAPLImp.c h5pGCPLImp.c h5pLAPLImp.c h5pLCPLImp.c \
+ h5pOCPLImp.c h5pOCpyPLImp.c h5pStrCPLImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c \
+ h5vlImp.c h5zImp.c
# HDF5 Java (JNI) library depends on HDF5 Library.
libhdf5_java_la_LIBADD=$(LIBHDF5)
diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c
index ccda0d2..0faa0cc 100644
--- a/java/src/jni/exceptionImp.c
+++ b/java/src/jni/exceptionImp.c
@@ -33,21 +33,14 @@ extern "C" {
#include "h5jni.h"
#include "exceptionImp.h"
-extern H5E_auto2_t efunc;
-extern void *edata;
+extern H5E_auto2_t efunc;
+extern void *edata;
/*******************/
/* Local Variables */
/*******************/
-/* These types are copied from H5Eprivate.h
- * They should be moved to a public include file, and deleted from
- * here.
- */
-
-#define H5E_NSLOTS 32 /*number of slots in an error stack */
-
/*
* The list of error messages in the system is kept as an array of
* error_code/message pairs, one for major error numbers and another for
@@ -73,29 +66,29 @@ typedef struct H5E_num_t {
/* Local Macros */
/********************/
-#define THROWEXCEPTION(className,args) { \
- jclass jc; \
- jmethodID jm; \
- jobject ex; \
- jc = ENVPTR->FindClass(ENVPAR (className)); \
- if (jc == NULL) { \
- return JNI_FALSE; \
- } \
- jm = ENVPTR->GetMethodID(ENVPAR jc, "<init>", "(Ljava/lang/String;)V"); \
- if (jm == NULL) { \
- printf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
- return JNI_FALSE; \
- } \
- ex = ENVPTR->NewObjectA (ENVPAR jc, jm, (jvalue*)(args)); \
- if (ex == NULL) { \
- printf("THROWEXCEPTION FATAL ERROR: %s: Creation failed\n", (className)); \
- return JNI_FALSE; \
- } \
- if (ENVPTR->Throw(ENVPAR (jthrowable)ex) < 0) { \
- printf("THROWEXCEPTION FATAL ERROR: %s: Throw failed\n", (className)); \
- return JNI_FALSE; \
- } \
- return JNI_TRUE; \
+#define THROWEXCEPTION(className, args) \
+{ \
+ jmethodID jm; \
+ jclass jc; \
+ jobject ex; \
+ \
+ if (NULL == (jc = ENVPTR->FindClass(ENVONLY, (className)))) \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ \
+ if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
+ \
+ if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
+ \
+ if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
}
/********************/
@@ -112,7 +105,9 @@ walk_error_callback
{
H5E_num_t *err_nums = (H5E_num_t *)_err_nums;
- if(err_desc) {
+ UNUSED(n);
+
+ if (err_desc) {
err_nums->maj_num = err_desc->maj_num;
err_nums->min_num = err_desc->min_num;
} /* end if */
@@ -130,8 +125,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5error_1off
(JNIEnv *env, jclass clss)
{
- H5Eget_auto2(H5E_DEFAULT, &efunc, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+ UNUSED(env);
+ UNUSED(clss);
+
+ if (H5Eget_auto2(H5E_DEFAULT, &efunc, &edata) < 0)
+ return -1;
+
+ if (H5Eset_auto2(H5E_DEFAULT, NULL, NULL) < 0)
+ return -1;
+
return 0;
} /* end Java_hdf_hdf5lib_H5_H5error_1off() */
@@ -145,10 +147,12 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5error_1on
(JNIEnv *env, jclass clss)
{
+ UNUSED(env);
+ UNUSED(clss);
+
H5Eset_auto2(H5E_DEFAULT, efunc, edata);
} /* end Java_hdf_hdf5lib_H5_H5error_1on() */
-
/*
* Class: hdf_hdf5lib_exceptions_HDFLibraryException
* Method: printStackTrace0
@@ -163,18 +167,25 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0
FILE *stream = NULL;
const char *file = NULL;
- if(file_name == NULL) {
+ UNUSED(obj);
+
+ if (NULL == file_name) {
H5Eprint2(H5E_DEFAULT, stderr);
- } /* end if */
+ }
else {
- file = ENVPTR->GetStringUTFChars(ENVPAR file_name, 0);
- stream = HDfopen(file, "a+");
- if(stream) {
+ PIN_JAVA_STRING(ENVONLY, file_name, file, NULL, "printStackTrace0: file name not pinned");
+
+ if ((stream = HDfopen(file, "a+"))) {
H5Eprint2(H5E_DEFAULT, stream);
HDfclose(stream);
- } /* end if */
- ENVPTR->ReleaseStringUTFChars(ENVPAR file_name, file);
- } /* end else */
+ }
+ }
+
+done:
+ if (file)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, file);
+
+ return;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0() */
/*
@@ -189,10 +200,15 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
+
+ UNUSED(env);
+ UNUSED(obj);
+
err_nums.maj_num = 0;
err_nums.min_num = 0;
- H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
+ if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
+ return -1;
return err_nums.maj_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber() */
@@ -209,27 +225,42 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
+
+ UNUSED(env);
+ UNUSED(obj);
+
err_nums.maj_num = 0;
err_nums.min_num = 0;
- H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
+ if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
+ return -1;
return err_nums.min_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber() */
/*
- * Routine to raise particular Java exceptions from C
+ * Routine to raise particular Java exceptions from C.
*/
static jboolean
H5JNIErrorClass
(JNIEnv *env, const char *message, const char *className)
{
- char *args[2];
- jstring str = ENVPTR->NewStringUTF(ENVPAR message);
- args[0] = (char *)str;
+ jstring str;
+ char *args[2];
+ jboolean retVal = JNI_FALSE;
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, message)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ args[0] = (char *) str;
args[1] = 0;
THROWEXCEPTION(className, args);
+
+ retVal = JNI_TRUE;
+
+done:
+ return retVal;
} /* end H5JNIErrorClass() */
/*
@@ -316,7 +347,7 @@ h5unimplemented
*/
jboolean
h5raiseException
- (JNIEnv *env, const char *exception, const char *message)
+ (JNIEnv *env, const char *message, const char *exception)
{
return H5JNIErrorClass(env, message, exception);
} /* end h5raiseException() */
@@ -336,51 +367,76 @@ jboolean
h5libraryError
(JNIEnv *env)
{
- char *args[2];
const char *exception = NULL;
- char *msg_str = NULL;
- int num_errs = 0;
- hid_t min_num;
- hid_t maj_num;
- ssize_t msg_size = 0;
H5E_type_t error_msg_type;
- jstring str = NULL;
- hid_t stk_id = -1;
H5E_num_t exceptionNumbers;
+ jstring str = NULL;
+ ssize_t msg_size = 0;
+ hid_t min_num;
+ hid_t maj_num;
+ hid_t stk_id = H5I_INVALID_HID;
+ char *args[2];
+ char *msg_str = NULL;
+ jboolean retVal = JNI_FALSE;
exceptionNumbers.maj_num = 0;
exceptionNumbers.min_num = 0;
/* Save current stack contents for future use */
- stk_id = H5Eget_current_stack(); /* This will clear current stack */
- if(stk_id >= 0)
- H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers);
+ if ((stk_id = H5Eget_current_stack()) >= 0)
+ /* This will clear current stack */
+ if (H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers) < 0)
+ goto done;
+
maj_num = exceptionNumbers.maj_num;
min_num = exceptionNumbers.min_num;
+ /*
+ * TODO: handle < 0 case.
+ */
+
+ /*
+ * No error detected in HDF5 error stack.
+ */
+ if (!maj_num && !min_num)
+ goto done;
+
exception = defineHDF5LibraryException(maj_num);
/* get the length of the name */
- msg_size = H5Eget_msg(min_num, NULL, NULL, 0);
- if(msg_size > 0) {
- msg_size++; /* add extra space for the null terminator */
- msg_str = (char*)HDcalloc((size_t)msg_size, sizeof(char));
- if(msg_str) {
- msg_size = H5Eget_msg(min_num, &error_msg_type, (char *)msg_str, (size_t)msg_size);
- str = ENVPTR->NewStringUTF(ENVPAR msg_str);
- HDfree(msg_str);
- } /* end if */
- } /* end if */
+ if ((msg_size = H5Eget_msg(min_num, NULL, NULL, 0)) < 0)
+ goto done;
+
+ if (msg_size > 0) {
+ if (NULL == (msg_str = (char *) HDcalloc((size_t)msg_size + 1, sizeof(char))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message");
+
+ if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0)
+ goto done;
+ msg_str[msg_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, msg_str)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
else
str = NULL;
- if(stk_id >= 0)
+
+ if (stk_id >= 0)
H5Eset_current_stack(stk_id);
- args[0] = (char *)str;
+ args[0] = (char *) str;
args[1] = 0;
+
THROWEXCEPTION(exception, args);
-} /* end h5libraryError() */
+ retVal = JNI_TRUE;
+
+done:
+ if (msg_str)
+ HDfree(msg_str);
+
+ return retVal;
+} /* end h5libraryError() */
/*
* defineHDF5LibraryException() returns the name of the sub-class
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index e88fa55..b9e320f 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -204,6 +204,8 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDECODE(JNIEnv *env, jclass cls) { return
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETE(JNIEnv *env, jclass cls) { return H5E_CANTDELETE; }
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETEFILE(JNIEnv *env, jclass cls) { return H5E_CANTDELETEFILE; }
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTENCODE(JNIEnv *env, jclass cls) { return H5E_CANTENCODE; }
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFLUSH(JNIEnv *env, jclass cls) { return H5E_CANTFLUSH; }
@@ -401,6 +403,8 @@ Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V18(JNIEnv *env, jclass cls){return
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V110(JNIEnv *env, jclass cls){return H5F_LIBVER_V110;}
JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V112(JNIEnv *env, jclass cls){return H5F_LIBVER_V112;}
+JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1NBOUNDS(JNIEnv *env, jclass cls){return H5F_LIBVER_NBOUNDS;}
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1LATEST(JNIEnv *env, jclass cls){return H5F_LIBVER_LATEST;}
@@ -729,6 +733,8 @@ Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE(JNIEnv *env, jclass cls){return
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS;}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE(JNIEnv *env, jclass cls){return H5P_VOL_INITIALIZE;}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_FILE_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_FILE_ACCESS_DEFAULT;}
@@ -758,6 +764,8 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS_DEFAULT;}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_VOL_INITIALIZE_DEFAULT;}
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5P_1CRT_1ORDER_1TRACKED(JNIEnv *env, jclass cls){return H5P_CRT_ORDER_TRACKED;}
JNIEXPORT jint JNICALL
@@ -1260,7 +1268,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass c
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) { return H5VL_NATIVE; }
JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVPAR H5VL_NATIVE_NAME); }
+Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVONLY, H5VL_NATIVE_NAME); }
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VALUE; }
JNIEXPORT jint JNICALL
diff --git a/java/src/jni/h5Imp.c b/java/src/jni/h5Imp.c
index 1ad6b17..f0dd691 100644
--- a/java/src/jni/h5Imp.c
+++ b/java/src/jni/h5Imp.c
@@ -35,7 +35,10 @@ extern "C" {
#include "h5jni.h"
#include "h5Imp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -46,10 +49,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5open
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5open();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+ if ((retVal = H5open()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5open */
@@ -62,10 +69,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5close
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5close();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5close()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5close */
@@ -78,10 +89,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5dont_1atexit
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5dont_atexit();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+ UNUSED(clss);
+
+ if ((retVal = H5dont_atexit()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5dont_1atexit */
@@ -94,28 +109,24 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5get_1libversion
(JNIEnv *env, jclass clss, jintArray libversion)
{
- unsigned *theArray = NULL;
- herr_t status = -1;
- jboolean isCopy;
-
- if (libversion == NULL) {
- h5nullArgument(env, "H5get_version: libversion is NULL");
- } /* end if */
- else {
- theArray = (unsigned*)ENVPTR->GetIntArrayElements(ENVPAR libversion, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5get_libversion: input not pinned");
- } /* end if */
- else {
- status = H5get_libversion(&(theArray[0]), &(theArray[1]), &(theArray[2]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray,0);
- } /* end else */
- } /* end else */
+ jboolean libversionArrayIsCopy;
+ int *libversionArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (libversion == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5get_libversion: libversion is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, libversion, libversionArray, &libversionArrayIsCopy, "H5get_libversion: libversion input not pinned");
+
+ if ((status = H5get_libversion((unsigned *) &(libversionArray[0]), (unsigned *) &(libversionArray[1]), (unsigned *) &(libversionArray[2]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (libversionArray)
+ UNPIN_INT_ARRAY(ENVONLY, libversion, libversionArray, (status < 0) ? JNI_ABORT : 0);
+
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5get_1libversion */
@@ -128,6 +139,9 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5check_1version
(JNIEnv *env, jclass clss, jint majnum, jint minnum, jint relnum)
{
+ UNUSED(env);
+ UNUSED(clss);
+
return (jint)H5check_version((unsigned)majnum, (unsigned)minnum, (unsigned)relnum);
} /* end Java_hdf_hdf5lib_H5_H5check_1version */
@@ -141,10 +155,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5garbage_1collect
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5garbage_collect();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5garbage_collect()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5garbage_1collect */
@@ -158,11 +176,15 @@ Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits
(JNIEnv *env, jclass clss, jint reg_global_lim, jint reg_list_lim,
jint arr_global_lim, jint arr_list_lim, jint blk_global_lim, jint blk_list_lim )
{
- herr_t retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
- (int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim);
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+ UNUSED(clss);
+
+ if ((retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
+ (int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits */
@@ -176,7 +198,13 @@ Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe
(JNIEnv *env, jclass clss)
{
hbool_t is_ts = false;
- H5is_library_threadsafe(&is_ts);
+
+ UNUSED(clss);
+
+ if (H5is_library_threadsafe(&is_ts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jboolean)is_ts;
} /* end Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe */
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index e0ec4ca..eaa356e 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -21,13 +21,17 @@
extern "C" {
#endif /* __cplusplus */
-#include "hdf5.h"
-#include "h5util.h"
#include <jni.h>
#include <stdlib.h>
#include <string.h>
+#include "hdf5.h"
+#include "h5util.h"
+#include "h5jni.h"
#include "h5aImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -35,28 +39,14 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
-#define CBENVPTR (cbenv)
-#define CBENVPAR
-#define JVMPTR (jvm)
-#define JVMPAR
-#define JVMPAR2
-#else
-#define CBENVPTR (*cbenv)
-#define CBENVPAR cbenv,
-#define JVMPTR (*jvm)
-#define JVMPAR jvm
-#define JVMPAR2 jvm,
-#endif
-
/********************/
/* Local Prototypes */
/********************/
-static herr_t H5AwriteVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AwriteVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AreadVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AreadVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AwriteVL_asstr(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AwriteVL_str(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AreadVL_asstr(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AreadVL_str(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data);
@@ -64,90 +54,6 @@ static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *inf
/* Local Macros */
/********************/
-#define PIN_BYTE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jbyte*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_BYTE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_SHORT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jshort*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetShortArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_SHORT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseShortArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_INT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jint*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetIntArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_INT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseIntArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_LONG_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jlong*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf,&isCopy); \
-}
-
-#define UNPIN_LONG_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_FLOAT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jfloat*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetFloatArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_FLOAT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseFloatArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_DOUBLE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jdouble*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetDoubleArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_DOUBLE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR buf, buffP, mode); \
-}
-
/*
* Class: hdf_hdf5lib_H5
@@ -159,18 +65,22 @@ Java_hdf_hdf5lib_H5__1H5Acreate
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist)
{
- hid_t attr_id = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t attr_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- attr_id = H5Acreate2((hid_t)loc_id, aName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Acreate: attribute name is NULL");
- if (attr_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate: attribute name not pinned");
+
+ if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate */
@@ -184,18 +94,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- hid_t attr_id = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t attr_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- attr_id = H5Aopen_name((hid_t)loc_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name,aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_name: attribute name is null");
- if (attr_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen_name: attribute name not pinned");
+
+ if((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1name */
@@ -209,39 +123,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jint idx)
{
- hid_t attr_id = H5Aopen_idx((hid_t)loc_id, (unsigned int) idx);
+ hid_t attr_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
- if (attr_id < 0)
- h5libraryError(env);
+ if ((attr_id = H5Aopen_idx((hid_t) loc_id, (unsigned int) idx)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1idx */
-static htri_t
-H5Tdetect_variable_str
- (hid_t tid) {
- htri_t ret_val = 0;
-
- if (H5Tget_class(tid) == H5T_COMPOUND) {
- unsigned i;
- unsigned nm = (unsigned)H5Tget_nmembers(tid);
- for(i = 0; i < nm; i++) {
- htri_t status = 0;
- hid_t mtid = 0;
- if((mtid = H5Tget_member_type(tid, i)) < 0)
- return -1; /* exit immediately on error */
- if((status = H5Tdetect_variable_str(mtid)) < 0)
- return status; /* exit immediately on error */
- ret_val |= status;
- H5Tclose (mtid);
- } /* end for */
- } /* end if */
- else
- ret_val = H5Tis_variable_str(tid);
-
- return ret_val;
-} /* end H5Tdetect_variable_str */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aread
@@ -251,46 +143,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument( env,"H5Aread: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jbyte *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
-
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
- if (status < 0) {
- UNPIN_BYTE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_BYTE_ARRAY(0); /* update java buffer for return */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread */
@@ -304,43 +198,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument( env,"H5Awrite: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jbyte *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_BYTE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not pinned");
+ }
- UNPIN_BYTE_ARRAY(JNI_ABORT); /* no need to update buffer */
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite */
@@ -354,46 +253,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1short
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_short: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jshort *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_short: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_SHORT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_SHORT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1short */
@@ -407,43 +308,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1short
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL ) {
- h5nullArgument(env, "H5Awrite_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_short: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_short: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jshort *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_short: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_short: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not pinned");
+ }
- UNPIN_SHORT_ARRAY(JNI_ABORT);
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1short */
@@ -457,46 +363,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1int
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_int: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jint *readBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (buf == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_int: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_INT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_INT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1int */
@@ -510,43 +418,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1int
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_int: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jint *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (buf == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_int: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_int: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not pinned");
+ }
- UNPIN_INT_ARRAY(JNI_ABORT);
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_INT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1int */
@@ -560,46 +473,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1long
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_long: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jlong *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_long: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_LONG_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_LONG_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1long */
@@ -613,42 +528,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1long
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_long: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jlong *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_long: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_LONG_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1long */
@@ -662,46 +583,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1float
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_float: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jfloat *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_float: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_FLOAT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1float */
@@ -715,42 +638,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1float
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_float: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jfloat *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_float: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1float */
@@ -764,46 +693,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1double
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_double: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jdouble *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_double: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_DOUBLE_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1double */
@@ -817,42 +748,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1double
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_double: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jdouble *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_double: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1double */
@@ -866,67 +803,58 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1string
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- char *cstr;
- size_t str_len;
- jsize i;
- jsize n;
- size_t pos;
- jstring jstr;
-
- c_buf = cstr = NULL;
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Aread_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Aread_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((cstr = (char*)HDmalloc(str_len + 1)) == NULL) {
- h5JNIFatalError(env, "H5Aread_string: memory allocation failed.");
- } /* end if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * str_len)) == NULL) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- h5JNIFatalError(env, "H5Aread_string: memory allocation failed.");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf);
-
- if (status < 0) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
- h5libraryError(env);
- } /* end if */
- else {
- pos = 0;
- for (i = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf+pos, str_len);
- cstr[str_len] = '\0';
- jstr = ENVPTR->NewStringUTF(ENVPAR cstr);
- ENVPTR->SetObjectArrayElement(ENVPAR j_buf, i, jstr);
- pos += str_len;
- } /* end for */
- } /* end else */
-
- if (c_buf)
- HDfree(c_buf);
- } /* end else cbuf allocation*/
-
- if (cstr)
- HDfree(cstr);
- } /* end else cstr allocation*/
- } /* end else */
+ jstring jstr;
+ size_t str_len;
+ size_t pos;
+ jsize i, n;
+ char *c_buf = NULL;
+ char *cstr = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_string: read buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_string: read buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (cstr = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, pos = 0; i < n; i++) {
+ HDmemcpy(cstr, c_buf+pos, str_len);
+ cstr[str_len] = '\0';
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ pos += str_len;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (c_buf)
+ HDfree(c_buf);
+ if (cstr)
+ HDfree(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1string */
@@ -940,52 +868,63 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1string
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- jsize str_len;
- jsize i;
- jsize n;
-
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Awrite_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Awrite_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = (jsize)H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * (size_t)str_len)) == NULL) {
- h5JNIFatalError(env, "H5Awrite_string: memory allocation failed.");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- jstring obj = (jstring)ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)j_buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
+ const char *utf8 = NULL;
+ jstring obj;
+ size_t i, str_len;
+ jsize n;
+ char *c_buf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_string: write buffer is NULL");
- if (utf8) {
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_string: write buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed");
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, c_buf);
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&c_buf[i * str_len], 0, str_len);
+ continue;
+ }
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Awrite_string: string not pinned");
+
+ HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for */
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (c_buf)
+ HDfree(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1string */
@@ -999,167 +938,201 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadVL
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5AreadVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
- }
- else if (isStr > 0) {
- status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5AreadVL: read buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1VL */
-herr_t
-H5AreadVL_asstr
+/*
+ * Helper method to read in a buffer of variable-length strings from an HDF5
+ * attribute. Each C-string is converted to a Java string and set in the output
+ * buffer in turn.
+ */
+static herr_t
+H5AreadVL_str
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- jint i;
- jint n;
- hid_t sid;
- jstring jstr;
- h5str_t h5str;
- hvl_t *rdata;
- hsize_t dims[H5S_MAX_RANK];
- size_t size;
- size_t max_len = 0;
- herr_t status = -1;
+ jstring jstr;
+ jsize i, n;
+ char **strs = NULL;
+ herr_t status = FAIL;
- /* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- /* we will need to read n number of hvl_t structures */
- rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Aread(aid, tid, rdata);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to read data");
- } /* end if */
- else {
- /* calculate the largest size of all the hvl_t structures read */
- max_len = 1;
- for (i=0; i < n; i++) {
- if ((rdata + i)->len > max_len)
- max_len = (rdata + i)->len;
- }
-
- /* create one malloc to hold largest element */
- size = H5Tget_size(tid) * max_len;
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
-
- if (h5str.s == NULL) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buf");
- } /* end if */
- else {
- H5T_class_t tclass = H5Tget_class(tid);
- /* convert each element to char string */
- for (i=0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_vlsprintf(&h5str, aid, tid, rdata+i, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- h5str_free(&h5str);
-
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- } /* end else */
- } /* end else */
- } /* end else */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_str: buf length < 0");
+ }
+
+ if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer");
+
+ if ((status = H5Aread(aid, tid, strs)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /*
+ * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < n; i++) {
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, strs[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ H5free_memory(strs[i]);
+ strs[i] = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (strs) {
+ for (i = 0; i < n; i++) {
+ if (strs[i])
+ H5free_memory(strs[i]);
+ }
+
+ HDfree(strs);
+ }
return status;
-}
+} /* end H5AreadVL_str */
-herr_t
-H5AreadVL_str
+/*
+ * Helper method to read in a buffer of variable-length (hvl_t)
+ * structures from an HDF5 attribute and convert each variable-length
+ * element's buffer into a Java string. Each string is then set
+ * in the output buffer in turn.
+ */
+static herr_t
+H5AreadVL_asstr
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- hid_t sid;
- hsize_t dims[H5S_MAX_RANK];
- herr_t status = -1;
-
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(char**)HDcalloc((size_t)n, sizeof(char*));
-
- if (strs == NULL) {
- h5JNIFatalError(env, "H5AreadVL_str: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Aread(aid, tid, strs);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs);
- H5Sclose(sid);
- HDfree(strs);
- h5JNIFatalError(env, "H5AreadVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ hsize_t dims[H5S_MAX_RANK];
+ jstring jstr;
+ h5str_t h5str;
+ size_t typeSize;
+ size_t i;
+ hid_t sid = H5I_INVALID_HID;
+ jsize n;
+ void *readBuf = NULL;
+ herr_t status = FAIL;
- /*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ /* Get size of string array */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_asstr: buf length < 0");
+ }
+
+ dims[0] = (hsize_t)n;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer");
+
+ if ((status = H5Aread(aid, tid, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Allocate a decent-sized initial string */
+ h5str_new(&h5str, 4 * typeSize);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer");
+
+ /* Convert each element to a char string */
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
- HDfree(strs);
- } /* end else */
- } /* end else */
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf) {
+ H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, readBuf);
+ HDfree(readBuf);
+ }
+ if (sid >= 0)
+ H5Sclose(sid);
return status;
-} /* end H5AreadVL_str */
+}
/*
* Class: hdf_hdf5lib_H5
@@ -1170,139 +1143,224 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AwriteVL
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5AwriteVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5AwriteVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
- }
- else if (isStr > 0) {
- status = H5AwriteVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL: write buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for(i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5AwriteVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5AwriteVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1VL */
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of C-strings.
+ * The buffer of C-strings is then written to the HDF5 attribute specified.
+ */
+static herr_t
H5AwriteVL_str
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- herr_t status = -1;
- char **wdata;
- jsize size;
- jint i;
+ const char *utf8 = NULL;
+ jstring obj;
+ jsize size;
+ jint i;
+ char **writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_str: buf length < 0");
+ }
- size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf);
+ if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer")
- wdata = (char**)HDcalloc((size_t)size + 1, sizeof(char*));
- if (!wdata) {
- h5JNIFatalError(env, "H5AwriteVL_str: cannot allocate buffer");
- } /* end if */
- else {
- HDmemset(wdata, 0, (size_t)size * sizeof(char*));
- for (i = 0; i < size; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- wdata[i] = (char*)HDmalloc((size_t)length + 1);
- if (wdata[i]) {
- HDmemset(wdata[i], 0, ((size_t)length + 1));
- HDstrncpy(wdata[i], utf8, (size_t)length);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
-
- status = H5Awrite((hid_t)aid, (hid_t)tid, wdata);
+ for (i = 0; i < size; ++i) {
+ jsize length;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ /*
+ * If the string object was NULL, skip it.
+ */
+ writeBuf[i] = NULL;
+ continue;
+ }
+
+ length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned");
+
+ if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer");
+
+ HDstrncpy(writeBuf[i], utf8, (size_t)length);
+ writeBuf[i][length] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Awrite((hid_t)aid, (hid_t)tid, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
for (i = 0; i < size; i++) {
- if(wdata[i]) {
- HDfree(wdata[i]);
- } /* end if */
- } /* end for */
- HDfree(wdata);
+ if (writeBuf[i])
+ HDfree(writeBuf[i]);
+ }
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ HDfree(writeBuf);
+ }
return (jint)status;
}
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of
+ * variable-length (hvl_t) elements. The buffer of variable-length
+ * elements is then written to the HDF5 attribute.
+ */
+static herr_t
H5AwriteVL_asstr
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- hid_t sid;
- hsize_t dims[H5S_MAX_RANK];
- herr_t status = -1;
-
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
-
- if (strs == NULL) {
- h5JNIFatalError(env, "H5AwriteVL_asstr: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Awrite(aid, tid, strs);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs);
- H5Sclose(sid);
- HDfree(strs);
- h5JNIFatalError(env, "H5AwriteVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ const char *utf8 = NULL;
+ hsize_t dims[H5S_MAX_RANK];
+ jstring jstr;
+ size_t typeSize;
+ size_t i;
+ hid_t sid = H5I_INVALID_HID;
+ jsize n;
+ void *writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_asstr: buf length < 0");
+ }
+
+ dims[0] = (hsize_t)n;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
+
+ /*
+ * When repeatedly writing a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (jstr = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize);
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, jstr);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
- HDfree(strs);
- } /* end else */
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, jstr, utf8, NULL, "H5AwriteVL_asstr: failed to pin string buffer");
+
+ /*
+ * TODO: If the string isn't a copy, we should probably make
+ * one before destroying it with h5str_convert.
+ */
+
+ if (!h5str_convert(ENVONLY, (char **) &utf8, aid, tid, &(((char *) writeBuf)[i * typeSize]), 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for (i = 0; i < n; i++) */
+
+ if ((status = H5Awrite(aid, tid, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
+ if (writeBuf) {
+ H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, writeBuf);
+ HDfree(writeBuf);
+ }
+ if (sid >= 0)
+ H5Sclose(sid);
return status;
} /* end H5AwriteVL_str */
@@ -1316,47 +1374,52 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- h5str_t h5str;
- size_t size;
- hdset_reg_ref_t *ref_data;
- jint i;
- jint n;
- jstring jstr;
+ hdset_reg_ref_t *ref_data = NULL;
+ h5str_t h5str;
+ jstring jstr;
+ jsize i, n;
+ herr_t status = FAIL;
- hid_t region = -1;
- hid_t aid = (hid_t) attr_id;
- hid_t tid = (hid_t) mem_type_id;
+ UNUSED(clss);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- size = sizeof(hdset_reg_ref_t); /*H5Tget_size(tid);*/
- ref_data = (hdset_reg_ref_t*)HDmalloc(size * (size_t)n);
+ HDmemset(&h5str, 0, sizeof(h5str_t));
- if (ref_data == NULL) {
- h5JNIFatalError(env, "H5Aread_reg_ref: failed to allocate buff for read");
- return -1;
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0");
+ }
- status = H5Aread(aid, tid, ref_data);
+ if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer");
- if (status < 0) {
- HDfree(ref_data);
- h5JNIFatalError(env, "H5Aread_reg_ref: failed to read data");
- return -1;
- } /* end if */
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDmemset(&h5str, 0, sizeof(h5str_t));
h5str_new(&h5str, 1024);
- for (i=0; i<n; i++) {
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer");
+
+ for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- h5str_sprintf(&h5str, aid, tid, ref_data[i], 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, ref_data[i], 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
} /* end for */
- h5str_free(&h5str);
- HDfree(ref_data);
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (ref_data)
+ HDfree(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref */
@@ -1370,12 +1433,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1space
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Aget_space((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aget_space((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1space */
@@ -1388,12 +1453,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1type
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Aget_type((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Aget_type((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1type */
@@ -1406,34 +1473,29 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1name
(JNIEnv *env, jclass clss, jlong attr_id)
{
- char *aName;
jstring str = NULL;
ssize_t buf_size;
+ char *attrName = NULL;
+
+ UNUSED(clss);
+
+ if ((buf_size = H5Aget_name((hid_t)attr_id, 0, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer");
+
+ if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ attrName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, attrName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (attrName)
+ HDfree(attrName);
- /* get the length of the name */
- buf_size = H5Aget_name((hid_t)attr_id, 0, NULL);
- if (buf_size <= 0) {
- h5badArgument(env, "H5Aget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Aget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Aget_name((hid_t)attr_id, (size_t)buf_size, aName);
- if (buf_size < 0) {
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- /* save the string; */
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- HDfree(aName);
- } /* end else */
- } /* end else */
- } /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1name */
@@ -1446,12 +1508,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs
(JNIEnv *env, jclass clss, jlong loc_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Aget_num_attrs((hid_t)loc_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aget_num_attrs((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs */
@@ -1464,18 +1528,22 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Adelete
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- herr_t status = -1;
- const char *aName;
+ const char *attrName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- status = H5Adelete((hid_t)loc_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Adelete: attribute name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Adelete: attribute name not pinned");
+
+ if ((status = H5Adelete((hid_t)loc_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Adelete */
@@ -1489,14 +1557,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Aclose
(JNIEnv *env, jclass clss, jlong attr_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- if (attr_id > 0)
- retVal = H5Aclose((hid_t)attr_id);
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aclose((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aclose */
@@ -1510,24 +1578,27 @@ Java_hdf_hdf5lib_H5__1H5Acreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist, jlong access_plist)
{
- hid_t status = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- status = H5Acreate2((hid_t)loc_id, aName, (hid_t)type_id,
- (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Acreate2: attribute name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate2: attribute name not pinned");
+
+ if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id,
+ (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate2 */
-
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Aopen
@@ -1538,18 +1609,22 @@ Java_hdf_hdf5lib_H5__1H5Aopen
(JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist)
{
- hid_t retVal = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- retVal = H5Aopen((hid_t)obj_id, aName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen: attribute name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen: attribute name not pinned");
+
+ if ((retVal = H5Aopen((hid_t)obj_id, attrName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen */
@@ -1563,19 +1638,23 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, jint order, jlong n, jlong aapl_id, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *aName;
+ const char *objName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- retVal = H5Aopen_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_by_idx: object name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aopen_by_idx: object name not pinned");
+
+ if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx */
@@ -1589,20 +1668,29 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, jlong aapl_id, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *aName;
- const char *attrName;
+ const char *objName = NULL;
+ const char *attrName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- retVal = H5Acreate_by_name((hid_t)loc_id, aName, attrName, (hid_t)type_id,
- (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Acreate_by_name: object name is NULL");
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Acreate_by_name: attribute name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Acreate_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Acreate_by_name: attribute name not pinned");
+
+ if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id,
+ (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name */
@@ -1616,21 +1704,30 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Aexists_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
+ const char *objName = NULL;
+ const char *attrName = NULL;
htri_t bval = JNI_FALSE;
- const char *aName;
- const char *attrName;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- bval = H5Aexists_by_name((hid_t)loc_id, aName, attrName, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aexists_by_name: object name is NULL");
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aexists_by_name: attribute name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aexists_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aexists_by_name: attribute name not pinned");
+
+ if ((bval = H5Aexists_by_name((hid_t)loc_id, objName, attrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Aexists_1by_1name */
@@ -1644,24 +1741,32 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Arename
(JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, jstring new_attr_name)
{
- herr_t retVal = -1;
- const char *oName;
- const char *nName;
+ const char *oldAttrName = NULL;
+ const char *newAttrName = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING_TWO(old_attr_name, oName, new_attr_name, nName);
- if (oName != NULL && nName != NULL) {
- retVal = H5Arename((hid_t)loc_id, oName, nName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(old_attr_name, oName, new_attr_name, nName);
+ if (NULL == old_attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename: old attribute name is NULL");
+ if (NULL == new_attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename: new attribute name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename: old attribute name not pinned");
+ PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename: new attribute name not pinned");
+
+ if ((retVal = H5Arename((hid_t)loc_id, oldAttrName, newAttrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName);
+ if (oldAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Arename */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Arename_by_name
@@ -1671,20 +1776,34 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Arename_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring old_attr_name, jstring new_attr_name, jlong lapl_id)
{
- herr_t retVal = -1;
- const char *aName;
- const char *oName;
- const char *nName;
-
- PIN_JAVA_STRING_THREE(obj_name, aName, old_attr_name, oName, new_attr_name, nName);
- if (aName != NULL && oName != NULL && nName != NULL) {
- retVal = H5Arename_by_name((hid_t)loc_id, aName, oName, nName, (hid_t)lapl_id);
-
- UNPIN_JAVA_STRING_THREE(obj_name, aName, old_attr_name, oName, new_attr_name, nName);
-
- if (retVal < 0)
- h5libraryError(env);
- }
+ const char *objName = NULL;
+ const char *oldAttrName = NULL;
+ const char *newAttrName = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename_by_name: object name is NULL");
+ if (NULL == old_attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename_by_name: old attribute name is NULL");
+ if (NULL == new_attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename_by_name: new attribute name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Arename_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename_by_name: old attribute name not pinned");
+ PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename_by_name: new attribute name not pinned");
+
+ if ((retVal = H5Arename_by_name((hid_t)loc_id, objName, oldAttrName, newAttrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName);
+ if (oldAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Arename_1by_1name */
@@ -1698,51 +1817,40 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- size_t buf_size;
- char *aValue;
- jlong status_size;
- jstring str = NULL;
- const char *aName;
-
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- /* get the length of the attribute name */
- status_size = H5Aget_name_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t) order, (hsize_t) n, (char*)NULL, (size_t)0, (hid_t)lapl_id);
-
- if(status_size < 0) {
- UNPIN_JAVA_STRING(obj_name, aName);
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)status_size + 1;/* add extra space for the null terminator */
-
- aValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (aValue == NULL) {
- UNPIN_JAVA_STRING(obj_name, aName);
- h5outOfMemory(env, "H5Aget_name_by_idx: malloc failed ");
- } /* end if */
- else {
- status_size = H5Aget_name_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t) order, (hsize_t) n, (char*)aValue, (size_t)buf_size, (hid_t)lapl_id);
-
- UNPIN_JAVA_STRING(obj_name, aName);
-
- if (status_size < 0) {
- HDfree(aValue);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aValue);
- HDfree(aValue);
- if (str == NULL) {
- /* exception -- fatal JNI error */
- h5JNIFatalError(env, "H5Aget_name_by_idx: return string not created");
- } /* end if */
- } /* end else */
- } /* end else */
- } /* end else */
- }
+ const char *objName = NULL;
+ jstring str = NULL;
+ ssize_t status_size = -1;
+ char *attrName = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aget_name_by_idx: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_name_by_idx: object name not pinned");
+
+ /* Get the length of the attribute name */
+ if ((status_size = H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t) order, (hsize_t) n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t) status_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name");
+
+ if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t) order, (hsize_t) n, (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ attrName[status_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, attrName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (attrName)
+ HDfree(attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
+
return str;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx */
@@ -1755,14 +1863,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1storage_1size
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hsize_t retVal = (hsize_t)-1;
+ hsize_t retVal = 0;
- retVal = H5Aget_storage_size((hid_t)attr_id);
-/* probably returns '0' if fails--don't do an exception */
+ UNUSED(clss);
+
+ if (!(retVal = H5Aget_storage_size((hid_t)attr_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1storage_1size */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aget_info
@@ -1772,23 +1883,23 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info
(JNIEnv *env, jclass clss, jlong attr_id)
{
- herr_t status = -1;
H5A_info_t ainfo;
- jvalue args[4];
jobject ret_obj = NULL;
+ jvalue args[4];
- status = H5Aget_info((hid_t)attr_id, &ainfo);
+ UNUSED(clss);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
+ if (H5Aget_info((hid_t)attr_id, &ainfo) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info */
@@ -1801,30 +1912,34 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- herr_t status;
+ const char *objName = NULL;
H5A_info_t ainfo;
+ herr_t status;
jvalue args[4];
jobject ret_obj = NULL;
- const char *aName;
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- status = H5Aget_info_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(obj_name, aName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aget_info_by_idx: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_idx: object name not pinned");
+
+ if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
- }
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx */
@@ -1837,30 +1952,39 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
- const char *aName;
- const char *attrName;
- herr_t status;
+ const char *objName = NULL;
+ const char *attrName = NULL;
H5A_info_t ainfo;
+ herr_t status;
jvalue args[4];
jobject ret_obj = NULL;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- status = H5Aget_info_by_name((hid_t)loc_id, aName, attrName, &ainfo, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aget_info_by_name: object name is NULL");
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aget_info_by_name: attribute name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aget_info_by_name: attribute name not pinned");
+
+ if ((status = H5Aget_info_by_name((hid_t)loc_id, objName, attrName, &ainfo, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
- }
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name */
@@ -1873,19 +1997,28 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Adelete_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
- herr_t retVal = -1;
- const char *aName;
- const char *attrName;
+ const char *objName = NULL;
+ const char *attrName = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- retVal = H5Adelete_by_name((hid_t)loc_id, aName, attrName, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Adelete_by_name: object name is NULL");
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Adelete_by_name: attribute name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Adelete_by_name: attribute name not pinned");
+
+ if ((retVal = H5Adelete_by_name((hid_t)loc_id, objName, attrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Adelete_1by_1name */
@@ -1899,20 +2032,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Aexists
(JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name)
{
+ const char *attrName = NULL;
htri_t bval = JNI_FALSE;
- const char *aName;
- PIN_JAVA_STRING(attr_name, aName);
- if (aName != NULL) {
- bval = H5Aexists((hid_t)obj_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(attr_name, aName);
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aexists: attribute name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aexists: attribute name not pinned");
+
+ if ((bval = H5Aexists((hid_t)obj_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Aexists */
@@ -1926,18 +2063,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- herr_t status = -1;
- const char *aName;
+ const char *objName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- status = H5Adelete_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(obj_name, aName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Adelete_by_idx: object name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_idx: object name not pinned");
+
+ if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
} /* end Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx */
/*
@@ -1950,19 +2091,28 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong aapl_id, jlong lapl_id)
{
- hid_t status = -1;
- const char *aName;
- const char *oName;
+ const char *attrName = NULL;
+ const char *objName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING_TWO(obj_name, oName, attr_name, aName);
- if (oName != NULL && aName != NULL) {
- status = H5Aopen_by_name((hid_t)loc_id, oName, aName, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, oName, attr_name, aName);
+ if (NULL == obj_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_by_name: object name is NULL");
+ if (NULL == attr_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_by_name: attribute name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aopen_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aopen_by_name: attribute name not pinned");
+
+ if ((status = H5Aopen_by_name((hid_t)loc_id, objName, attrName, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name */
@@ -1976,60 +2126,69 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Aget_create_plist((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aget_create_plist((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist */
static herr_t
H5A_iterate_cb
(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) {
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[4];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].z = info->corder_valid;
- args[1].j = info->corder;
- args[2].i = info->cset;
- args[3].j = (jlong)info->data_size;
- /* get a reference to your class if you don't have it already */
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5A_info_t");
- if (cls != 0) {
- /* get a reference to the constructor; the name is <init> */
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(ZJIJ)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- } /* end if (constructor != 0) */
- } /* end if (cls != 0) */
- } /* end if (mid != 0) */
- } /* end if (cls != 0) */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[4];
+ void *op_data = (void *)wrapper->op_data;
+ jint status = -1;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5A_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].z = info->corder_valid;
+ args[1].j = info->corder;
+ args[2].i = info->cset;
+ args[3].j = (jlong)info->data_size;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(ZJIJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5A_iterate_cb */
@@ -2044,22 +2203,24 @@ Java_hdf_hdf5lib_H5_H5Aiterate
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- cb_wrapper wrapper = {callback_op, op_data};
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: callback_op is NULL");
+ if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aiterate */
@@ -2073,27 +2234,31 @@ Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data, jlong access_id)
{
- const char *lName;
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ const char *objName = NULL;
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Aiterate_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate_by_name: callback_op is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate_by_name: object name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aiterate_by_name: object name not pinned");
+
+ if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name */
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 79a5d0a..5500847 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -27,8 +27,12 @@ extern "C" {
#include <string.h>
#include "hdf5.h"
#include "h5util.h"
+#include "h5jni.h"
#include "h5dImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -36,121 +40,19 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
- #ifdef _WINDOWS
- #include <direct.h>
- #endif
- #define CBENVPTR (cbenv)
- #define CBENVPAR
- #define JVMPTR (jvm)
- #define JVMPAR
- #define JVMPAR2
-#else
- #define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
- #define JVMPTR (*jvm)
- #define JVMPAR jvm
- #define JVMPAR2 jvm,
-#endif
-
/********************/
/* Local Prototypes */
/********************/
-static herr_t H5DreadVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DreadVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DreadVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
/********************/
/* Local Macros */
/********************/
-#define PIN_BYTE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jbyte*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_BYTE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_SHORT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jshort*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetShortArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_SHORT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseShortArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_INT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jint*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetIntArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_INT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseIntArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_LONG_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jlong*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf,&isCopy); \
-}
-
-#define UNPIN_LONG_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_FLOAT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jfloat*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetFloatArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_FLOAT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseFloatArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_DOUBLE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jdouble*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetDoubleArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_DOUBLE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR buf, buffP, mode); \
-}
/*
* Class: hdf_hdf5lib_H5
@@ -162,18 +64,22 @@ Java_hdf_hdf5lib_H5__1H5Dcreate
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist_id)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dcreate2((hid_t)loc_id, fileName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dcreate: dataset name is NULL");
- if (dset_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate: dataset name not pinned");
+
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate */
@@ -187,17 +93,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dopen
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dopen2((hid_t)loc_id, fileName, H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dopen: dataset name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dopen: dataset name not pinned");
+
+ if ((dset_id = H5Dopen2((hid_t)loc_id, dsetName, H5P_DEFAULT)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dopen */
@@ -211,12 +122,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1space
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Dget_space((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Dget_space((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1space */
@@ -229,12 +142,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1type
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_type((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_type((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1type */
@@ -247,40 +162,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_create_plist((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_create_plist((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist */
-static htri_t
-H5Tdetect_variable_str
- (hid_t tid) {
- htri_t ret_val = 0;
-
- if (H5Tget_class(tid) == H5T_COMPOUND) {
- unsigned i;
- unsigned nm = (unsigned)H5Tget_nmembers(tid);
- for(i = 0; i < nm; i++) {
- htri_t status = 0;
- hid_t mtid = 0;
- if((mtid = H5Tget_member_type(tid, i)) < 0)
- return -1; /* exit immediately on error */
- if((status = H5Tdetect_variable_str(mtid)) < 0)
- return status; /* exit immediately on error */
- ret_val |= status;
- H5Tclose (mtid);
- } /* end for */
- } /* end if */
- else
- ret_val = H5Tis_variable_str(tid);
-
- return ret_val;
-} /* end H5Tdetect_variable_str */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Dread
@@ -291,48 +183,49 @@ Java_hdf_hdf5lib_H5_H5Dread
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jbyte *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
-
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_BYTE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_BYTE_ARRAY(0); /* update java buffer for return */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread */
@@ -347,44 +240,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jbyte *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_BYTE_ARRAY(JNI_ABORT); /* no need to update buffer */
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite */
@@ -398,13 +296,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Dclose
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Dclose((hid_t)dataset_id);
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dclose((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dclose */
@@ -417,15 +316,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dget_1storage_1size
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hsize_t retVal = (hsize_t)-1;
+ hsize_t retVal = 0;
- if (dataset_id < 0) {
- h5badArgument(env, "H5Dget_storage_size: not a dataset");
- } /* end if */
- else {
- retVal = H5Dget_storage_size((hid_t)dataset_id);
- } /* end else */
+ UNUSED(clss);
+
+ if (dataset_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dget_storage_size: not a dataset");
+ if (!(retVal = H5Dget_storage_size((hid_t)dataset_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1storage_1size */
@@ -439,27 +340,23 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
(JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
jlong xfer_plist_id, jbyteArray buf)
{
- herr_t status = -1;
- jbyte *byteP;
- jboolean isCopy;
+ jboolean vlenBufIsCopy;
+ jbyte *vlenBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dvlen_reclaim: buf is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Dvlen_reclaim: buf not pinned");
- } /* end if */
- else {
- status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, byteP);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dvlen_reclaim: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, &vlenBufIsCopy, "H5Dvlen_reclaim: buffer not pinned");
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, byteP, JNI_ABORT);
+ if ((status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, vlenBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+done:
+ if (vlenBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim */
@@ -474,47 +371,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1short
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ jshort *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_short: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_short: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_SHORT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_SHORT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1short */
@@ -529,44 +428,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ jshort *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL ) {
- h5nullArgument(env, "H5Dwrite_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_short: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_short: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_short: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_SHORT_ARRAY(JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1short */
@@ -581,47 +485,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1int
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jint *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_int: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_int: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_INT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_INT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1int */
@@ -636,44 +542,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jint *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_int: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_int: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_INT_ARRAY(JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1int */
@@ -688,47 +599,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1long
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jlong *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_long: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_long: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_LONG_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_LONG_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1long */
@@ -743,43 +656,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jlong *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_long: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_long: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_LONG_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1long */
@@ -794,47 +713,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1float
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jfloat *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_float: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_float: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_FLOAT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1float */
@@ -849,43 +770,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jfloat *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_float: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_float: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1float */
@@ -900,47 +827,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1double
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ jdouble *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_double: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_double: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_DOUBLE_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1double */
@@ -955,43 +884,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ jdouble *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_double: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_double: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1double */
@@ -1006,68 +941,59 @@ Java_hdf_hdf5lib_H5_H5Dread_1string
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- char *cstr;
- size_t str_len;
- jsize i;
- jsize n;
- size_t pos;
- jstring jstr;
-
- c_buf = cstr = NULL;
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Dread_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Dread_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((cstr = (char*)HDmalloc(str_len + 1)) == NULL) {
- h5JNIFatalError(env, "H5Dread_string: memory allocation failed.");
- } /* end if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * str_len)) == NULL) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- h5JNIFatalError(env, "H5Dread_string: memory allocation failed.");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf);
-
- if (status < 0) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
- h5libraryError(env);
- } /* end if */
- else {
- pos = 0;
- for (i = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf+pos, str_len);
- cstr[str_len] = '\0';
- jstr = ENVPTR->NewStringUTF(ENVPAR cstr);
- ENVPTR->SetObjectArrayElement(ENVPAR j_buf, i, jstr);
- pos += str_len;
- } /* end for */
- } /* end else */
-
- if (c_buf)
- HDfree(c_buf);
- } /* end else cbuf allocation*/
-
- if (cstr)
- HDfree(cstr);
- } /* end else cstr allocation*/
- } /* end else */
+ jstring jstr;
+ size_t str_len;
+ size_t pos;
+ jsize i, n;
+ char *c_buf = NULL;
+ char *cstr = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_string: read buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_string: read buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (cstr = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, pos = 0; i < n; i++) {
+ HDmemcpy(cstr, c_buf+pos, str_len);
+ cstr[str_len] = '\0';
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ pos += str_len;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (c_buf)
+ HDfree(c_buf);
+ if (cstr)
+ HDfree(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1string */
@@ -1082,53 +1008,64 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- jsize str_len;
- jsize i;
- jsize n;
-
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Dwrite_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Dwrite_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = (jsize)H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * (size_t)str_len)) == NULL) {
- h5JNIFatalError(env, "H5Dwrite_string: memory allocation failed.");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- jstring obj = (jstring)ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)j_buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
-
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf);
-
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+ const char *utf8 = NULL;
+ jstring obj;
+ size_t i, str_len;
+ jsize n;
+ char *c_buf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_string: write buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_string: write buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed");
+
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&c_buf[i * str_len], 0, str_len);
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Dwrite_string: string not pinned");
+
+ HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for */
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (c_buf)
+ HDfree(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1string */
@@ -1143,106 +1080,216 @@ Java_hdf_hdf5lib_H5_H5DreadVL
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5DreadVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- }
- else if (isStr > 0) {
- status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DreadVL: read buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1VL */
-herr_t
+/*
+ * Helper method to read in a buffer of variable-length strings from an HDF5
+ * dataset. Each C-string is converted to a Java string and set in the output
+ * buffer in turn.
+ */
+static herr_t
+H5DreadVL_str
+ (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+{
+ jstring jstr;
+ jsize i, n;
+ char **strs = NULL;
+ herr_t status = FAIL;
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_str: buf length < 0");
+ }
+
+ if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer");
+
+ if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /*
+ * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < n; i++) {
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, strs[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ H5free_memory(strs[i]);
+ strs[i] = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (strs) {
+ for (i = 0; i < n; i++) {
+ if (strs[i])
+ H5free_memory(strs[i]);
+ }
+
+ HDfree(strs);
+ }
+
+ return status;
+} /* end H5DreadVL_str */
+
+/*
+ * Helper method to read in a buffer of variable-length (hvl_t)
+ * structures from an HDF5 dataset and convert each variable-length
+ * element's buffer into a Java string. Each string is then set
+ * in the output buffer in turn.
+ */
+static herr_t
H5DreadVL_asstr
(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
{
- jint i;
- jint n;
- jstring jstr;
- h5str_t h5str;
- hvl_t *rdata;
- size_t size;
- size_t max_len = 0;
- herr_t status = -1;
+ H5T_class_t tclass;
+ jstring jstr;
+ h5str_t h5str;
+ hbool_t close_mem_space = FALSE;
+ size_t typeSize;
+ size_t i;
+ hid_t mem_space = mem_sid;
+ jsize n;
+ void *readBuf = NULL;
+ herr_t status = FAIL;
+
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ if (mem_space == H5S_ALL) {
+ mem_space = file_sid;
+
+ if (mem_space == H5S_ALL) {
+ /*
+ * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ */
+ if ((mem_space = H5Dget_space(did)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ close_mem_space = TRUE;
+
+ if (H5Sselect_all(mem_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ }
/* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- /* we will need to read n number of hvl_t structures */
- rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, rdata);
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_asstr: buf length < 0");
+ }
- if (status < 0) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to read data");
- } /* end if */
- else {
- /* calculate the largest size of all the hvl_t structures read */
- max_len = 1;
- for (i=0; i < n; i++) {
- if ((rdata + i)->len > max_len)
- max_len = (rdata + i)->len;
- }
-
- /* create one malloc to hold largest element */
- size = H5Tget_size(tid) * max_len;
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
-
- if (h5str.s == NULL) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buf");
- } /* end if */
- else {
- H5T_class_t tclass = H5Tget_class(tid);
- /* convert each element to char string */
- for (i=0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_vlsprintf(&h5str, did, tid, rdata+i, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- h5str_free(&h5str);
-
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- } /* end else */
- } /* end else */
- } /* end else */
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer");
+
+ if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Allocate a decent-sized initial string */
+ h5str_new(&h5str, 4 * typeSize);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer");
+
+ if ((tclass = H5Tget_class(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Convert each element to a char string */
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf) {
+ H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, readBuf);
+ HDfree(readBuf);
+ }
+ if (close_mem_space)
+ H5Sclose(mem_space);
return status;
}
@@ -1264,168 +1311,265 @@ Java_hdf_hdf5lib_H5_H5Dread_1VLStrings
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isVlenStr=0;
+ htri_t isVlenStr = 0;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_VLStrings: buf is NULL");
- } /* end if */
- else {
- isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: read buffer is NULL");
- if (isVlenStr) {
- status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- } /* end if */
- else
- h5badArgument(env, "H5Dread_VLStrings: type is not variable length String");
- } /* end else */
+ if ((isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (isVlenStr) {
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: datatype is not variable length String");
+
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1VLStrings */
-herr_t
-H5DreadVL_str
- (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5DwriteVL
+ * Signature: (JJJJJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5DwriteVL
+ (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
+ jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- herr_t status = -1;
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(char**)HDcalloc((size_t)n, sizeof(char*));
+ UNUSED(clss);
- if (strs == NULL) {
- h5JNIFatalError(env, "H5DreadVL_str: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs);
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL: write buffer is NULL");
- if (status < 0) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- HDfree(strs);
- h5JNIFatalError(env, "H5DreadVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDfree(strs);
- } /* end else */
- } /* end else */
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
- return status;
-} /* end H5DreadVL_str */
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
+ }
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5DwriteVL
- * Signature: (JJJJJ[Ljava/lang/String;)I
+ * Helper method to convert an array of Java strings into a buffer of C-strings.
+ * The buffer of C-strings is then written to the HDF5 dataset specified.
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5DwriteVL
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+static herr_t
+H5DwriteVL_str
+ (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ const char *utf8 = NULL;
+ jstring obj;
+ jsize size;
+ jsize i;
+ char **writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_str: buf length < 0");
+ }
- if (buf == NULL) {
- h5nullArgument(env, "H5DwriteVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+ if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer");
+
+ for (i = 0; i < size; ++i) {
+ jsize length;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ writeBuf[i] = NULL;
+ continue;
}
- else if (isStr > 0) {
- status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+
+ length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned");
+
+ if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer");
+
+ HDstrncpy(writeBuf[i], utf8, (size_t)length + 1);
+ writeBuf[i][length] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
+ for (i = 0; i < size; i++) {
+ if (writeBuf[i])
+ HDfree(writeBuf[i]);
}
- } /* end else */
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */
+ HDfree(writeBuf);
+ }
+
+ return status;
+} /* end H5DwriteVL_str */
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of
+ * variable-length (hvl_t) elements. The buffer of variable-length
+ * elements is then written to the HDF5 dataset.
+ */
+static herr_t
H5DwriteVL_asstr
(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- hvl_t *wdata;
- jsize size;
- jint i;
- jint n;
+ const char *utf8 = NULL;
+ jstring obj;
+ hbool_t close_mem_space = FALSE;
+ size_t typeSize;
+ size_t i;
+ hid_t mem_space = mem_sid;
+ jsize n;
+ void *writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if (mem_space == H5S_ALL) {
+ mem_space = file_sid;
+
+ if (mem_space == H5S_ALL) {
+ /*
+ * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ */
+ if ((mem_space = H5Dget_space(did)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ close_mem_space = TRUE;
+
+ if (H5Sselect_all(mem_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ }
- /* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- wdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_asstr: buf length < 0");
+ }
- if (wdata == NULL) {
- h5JNIFatalError(env, "H5DwriteVL_asstr: failed to allocate buff for write");
- } /* end if */
- else {
- for (i = 0; i < n; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
+
+ for (i = 0; i < (size_t) n; ++i) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (utf8) {
- h5str_vlconvert(utf8, did, tid, wdata+i, 0);
- } /* end if */
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize);
+ continue;
+ }
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
- status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, wdata);
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_asstr: failed to pin string buffer");
- /* now free memory*/
- for (i = 0; i < n; i++) {
- if(wdata+i) {
- HDfree(wdata+i);
- } /* end if */
- } /* end for */
- HDfree(wdata);
+ /*
+ * TODO: If the string isn't a copy, we should probably make
+ * one before destroying it with h5str_convert.
+ */
+
+ if (!h5str_convert(ENVONLY, (char **) &utf8, did, tid, &(((char *) writeBuf)[i * typeSize]), 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
+ H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, writeBuf);
+ HDfree(writeBuf);
+ }
+ if (close_mem_space)
+ H5Sclose(mem_space);
return status;
} /* end H5DwriteVL_asstr */
@@ -1440,79 +1584,28 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isVlenStr=0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_VLStrings: buf is NULL");
- } /* end if */
- else {
- isVlenStr = H5Tis_variable_str((hid_t)mem_type_id);
-
- if (isVlenStr) {
- status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- } /* end if */
- else
- h5badArgument(env, "H5Dwrite_VLStrings: type is not variable length String");
- } /* end else */
+ htri_t isVlenStr = 0;
+ herr_t status = FAIL;
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */
+ UNUSED(clss);
-herr_t
-H5DwriteVL_str
- (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf)
-{
- herr_t status = -1;
- char **wdata;
- jsize size;
- jsize i;
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: write buffer is NULL");
- size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf);
- wdata = (char**)HDmalloc((size_t)size * sizeof (char*));
+ if ((isVlenStr = H5Tis_variable_str((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (!wdata) {
- h5JNIFatalError(env, "H5DwriteVL_str: cannot allocate buffer");
+ if (isVlenStr) {
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
} /* end if */
- else {
- HDmemset(wdata, 0, (size_t)size * sizeof(char*));
- for (i = 0; i < size; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- wdata[i] = (char*)HDmalloc((size_t)length + 1);
- if (wdata[i]) {
- HDmemset(wdata[i], 0, (size_t)length + 1);
- HDstrncpy(wdata[i], utf8, (size_t)length + 1);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
-
- status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, wdata);
-
- /* now free memory*/
- for (i = 0; i < size; i++) {
- if(wdata[i]) {
- HDfree(wdata[i]);
- } /* end if */
- } /* end for */
- HDfree(wdata);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: datatype is not variable length String");
- return status;
-} /* end H5DwriteVL_str */
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */
/*
* Class: hdf_hdf5lib_H5
@@ -1525,49 +1618,52 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- h5str_t h5str;
- size_t size;
- hdset_reg_ref_t *ref_data;
- jint i;
- jint n;
- jstring jstr;
+ hdset_reg_ref_t *ref_data = NULL;
+ h5str_t h5str;
+ jstring jstr;
+ jsize i, n;
+ herr_t status = FAIL;
- hid_t region = -1;
- hid_t did = (hid_t) dataset_id;
- hid_t tid = (hid_t) mem_type_id;
- hid_t mem_sid = (hid_t) mem_space_id;
- hid_t file_sid = (hid_t) file_space_id;
+ UNUSED(clss);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- size = sizeof(hdset_reg_ref_t); /*H5Tget_size(tid);*/
- ref_data = (hdset_reg_ref_t*)HDmalloc(size * (size_t)n);
+ HDmemset(&h5str, 0, sizeof(h5str_t));
- if (ref_data == NULL) {
- h5JNIFatalError(env, "H5Dread_reg_ref: failed to allocate buff for read");
- return -1;
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0");
+ }
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, ref_data);
+ if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
- if (status < 0) {
- HDfree(ref_data);
- h5JNIFatalError(env, "H5Dread_reg_ref: failed to read data");
- return -1;
- } /* end if */
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDmemset(&h5str, 0, sizeof(h5str_t));
h5str_new(&h5str, 1024);
- for (i=0; i<n; i++) {
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer");
+
+ for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- h5str_sprintf(&h5str, did, tid, ref_data[i], 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, &ref_data[i], 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
} /* end for */
- h5str_free(&h5str);
- HDfree(ref_data);
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (ref_data)
+ HDfree(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref */
@@ -1582,17 +1678,22 @@ Java_hdf_hdf5lib_H5__1H5Dcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dcreate2((hid_t)loc_id, fileName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dcreate2: dataset name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate2: dataset name not pinned");
+
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate2 */
@@ -1606,17 +1707,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dopen2((hid_t)loc_id, fileName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dopen2: dataset name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dopen2: dataset name not pinned");
+
+ if ((dset_id = H5Dopen2((hid_t)loc_id, dsetName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dopen2 */
@@ -1630,12 +1736,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dcreate_1anon
(JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id, jlong dcpl_id, jlong dapl_id)
{
- hid_t dset_id = -1;
+ hid_t dset_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
- dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id);
- if (dset_id < 0)
- h5libraryError(env);
+ if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate_1anon */
@@ -1650,9 +1758,12 @@ Java_hdf_hdf5lib_H5_H5Dget_1space_1status
{
H5D_space_status_t space_status = H5D_SPACE_STATUS_ERROR;
+ UNUSED(clss);
+
if (H5Dget_space_status((hid_t)loc_id, &space_status) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)space_status;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1space_1status */
@@ -1665,12 +1776,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dget_1access_1plist
(JNIEnv *env, jclass clss, jlong loc_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_access_plist((hid_t)loc_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_access_plist((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1access_1plist */
@@ -1685,10 +1798,12 @@ Java_hdf_hdf5lib_H5_H5Dget_1offset
{
haddr_t offset = HADDR_UNDEF;
- offset = H5Dget_offset((hid_t)loc_id);
- if (offset == HADDR_UNDEF)
- h5libraryError(env);
+ UNUSED(clss);
+ if (HADDR_UNDEF == (offset = H5Dget_offset((hid_t)loc_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)offset;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1offset */
@@ -1701,12 +1816,15 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size
(JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id, jlong space_id)
{
- hsize_t sz = 0;
+ hsize_t sz = 0;
+
+ UNUSED(clss);
- if (H5Dvlen_get_buf_size((hid_t)dataset_id, (hid_t)type_id, (hid_t)space_id, &sz) < 0)
- h5libraryError(env);
+ if (H5Dvlen_get_buf_size((hid_t)dataset_id, (hid_t)type_id, (hid_t)space_id, &sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jlong)sz;
+done:
+ return (jlong)sz;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size_1long */
/*
@@ -1718,49 +1836,36 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dfill
(JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf, jlong buf_type_id, jlong space_id)
{
- herr_t status;
- jbyte *fillP;
- jbyte *buffP;
jboolean isCopy1;
jboolean isCopy2;
+ herr_t status = FAIL;
+ jbyte *fillP = NULL;
+ jbyte *buffP = NULL;
+ UNUSED(clss);
- if (buf == NULL) {
- h5nullArgument(env, "H5Dfill: buf is NULL");
- } /* end if */
- else {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dfill: buf not pinned");
- } /* end if */
- else {
- if(fill) {
- fillP = ENVPTR->GetByteArrayElements(ENVPAR fill, &isCopy1);
- if (fillP == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5JNIFatalError( env, "H5Dfill: fill not pinned");
- return;
- } /* end if */
- } /* end if */
- else
- fillP = NULL;
-
- status = H5Dfill((const void*)fillP, (hid_t)fill_type_id, (void*)buffP, (hid_t)buf_type_id, (hid_t)space_id);
- if(fillP) {
- /* free the buffer without copying back */
- ENVPTR->ReleaseByteArrayElements(ENVPAR fill, fillP, JNI_ABORT);
- } /* end if */
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (isCopy2 == JNI_TRUE) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, 0);
- } /* end if */
- } /* end else */
- }
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dfill: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, buffP, &isCopy2, "H5Dfill: buffer not pinned");
+
+ if (fill) {
+ PIN_BYTE_ARRAY(ENVONLY, fill, fillP, &isCopy1, "H5Dfill: fill buffer not pinned");
+ }
+
+ if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id, (hid_t)space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (fillP) {
+ UNPIN_BYTE_ARRAY(ENVONLY, fill, fillP, JNI_ABORT);
+ fillP = NULL;
}
+
+done:
+ if (fillP)
+ UNPIN_BYTE_ARRAY(ENVONLY, fill, fillP, JNI_ABORT);
+ if (buffP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, buffP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Dfill */
/*
@@ -1772,106 +1877,97 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dset_1extent
(JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf)
{
+ jboolean isCopy;
+ hsize_t *dims = NULL;
herr_t status;
- hsize_t *dims;
- jlong *buffP;
jsize rank;
- jboolean isCopy;
+ jlong *dimsBuf = NULL;
int i = 0;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dset_extent: buf is NULL");
- } /* end if */
- else {
- rank = ENVPTR->GetArrayLength(ENVPAR buf);
- if (rank <= 0) {
- h5JNIFatalError(env, "H5Dset_extent: rank <=0");
- } /* end if */
- else {
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (buffP == NULL) {
- h5JNIFatalError( env, "H5Dset_extent: buf not pinned");
- } /* end if */
- else {
- dims = (hsize_t*)HDmalloc((size_t)rank * sizeof(hsize_t));
- for (i = 0; i< rank; i++)
- dims[i] = (hsize_t)buffP[i];
-
- status = H5Dset_extent((hid_t)loc_id, (hsize_t*)dims);
-
- HDfree (dims);
-
- /* free the buffer without copying back */
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, JNI_ABORT);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dset_extent: buffer is NULL");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dset_extent: buf length <= 0");
}
+
+ PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned");
+
+ if (NULL == (dims = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer");
+
+ for (i = 0; i < rank; i++)
+ dims[i] = (hsize_t)dimsBuf[i];
+
+ if ((status = H5Dset_extent((hid_t)loc_id, (hsize_t *)dims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dims)
+ HDfree(dims);
+ if (dimsBuf)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, JNI_ABORT);
} /* end Java_hdf_hdf5lib_H5_H5Dset_1extent */
static herr_t
H5D_iterate_cb
- (void* elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) {
- JNIEnv *cbenv;
- jint status;
- jclass cls;
- jmethodID mid;
- jbyteArray elemArray;
- jlongArray pointArray;
- jsize size;
+ (void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) {
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ jbyteArray elemArray;
+ jlongArray pointArray;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = FAIL;
+ jsize size;
+ void *op_data = (void *)wrapper->op_data;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5D_iterate_cb: failed to attach current thread to JVM");
+ }
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls == 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I");
- if (mid == 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (elem == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- if (point == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- size = (jsize)H5Tget_size(elem_id);
- elemArray = CBENVPTR->NewByteArray(CBENVPAR size);
- if (elemArray == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- CBENVPTR->SetByteArrayRegion(CBENVPAR elemArray, 0, size, (jbyte *)elem);
+ if (NULL == elem)
+ H5_NULL_ARGUMENT_ERROR(CBENVONLY, "H5D_iterate_cb: element buffer is NULL");
+ if (NULL == point)
+ H5_NULL_ARGUMENT_ERROR(CBENVONLY, "H5D_iterate_cb: point is NULL");
- pointArray = CBENVPTR->NewLongArray(CBENVPAR 2);
- if (pointArray == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- CBENVPTR->SetLongArrayRegion(CBENVPAR pointArray, 0, 2, (const jlong *)point);
+ if (!(size = (jsize)H5Tget_size(elem_id)))
+ H5_LIBRARY_ERROR(CBENVONLY);
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, (void*)elemArray, elem_id, ndim, pointArray, op_data);
+ if (NULL == (elemArray = CBENVPTR->NewByteArray(CBENVONLY, size)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- CBENVPTR->GetByteArrayRegion(CBENVPAR elemArray, 0, size, (jbyte *)elem);
+ CBENVPTR->SetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- JVMPTR->DetachCurrentThread(JVMPAR);
+ if (NULL == (pointArray = CBENVPTR->NewLongArray(CBENVONLY, 2)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return status;
+ CBENVPTR->SetLongArrayRegion(CBENVONLY, pointArray, 0, 2, (const jlong *)point);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim, pointArray, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ CBENVPTR->GetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
} /* end H5D_iterate_cb */
/*
@@ -1884,41 +1980,31 @@ Java_hdf_hdf5lib_H5_H5Diterate
(JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space,
jobject callback_op, jobject op_data)
{
- herr_t status = -1;
- jboolean isCopy;
- jbyte *buffP;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ jboolean isCopy;
+ jbyte *iterBuf = NULL;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if (op_data == NULL) {
- h5nullArgument(env, "H5Diterate: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Diterate: callback_op is NULL");
- } /* end if */
- else if (buf == NULL) {
- h5nullArgument(env, "H5Diterate: buf is NULL");
- } /* end if */
- else {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Diterate: buf not pinned");
- } /* end if */
- else {
- status = H5Diterate((void*)buffP, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void*)&wrapper);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (isCopy == JNI_TRUE) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, 0);
- } /* end if */
- } /* end else */
- } /* end else */
- }
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: callback_op is NULL");
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, &isCopy, "H5Diterate: buffer not pinned");
+
+ if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (iterBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT));
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Diterate */
@@ -1932,8 +2018,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Dflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/*
@@ -1945,11 +2036,14 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Drefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
- if (H5Drefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
-}
+ UNUSED(clss);
+ if (H5Drefresh((hid_t)loc_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ return;
+}
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c
index 9c80461..937323e 100644
--- a/java/src/jni/h5eImp.c
+++ b/java/src/jni/h5eImp.c
@@ -39,6 +39,9 @@ extern "C" {
#include "h5jni.h"
#include "h5eImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -46,20 +49,6 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
- #define CBENVPTR (cbenv)
- #define CBENVPAR
- #define JVMPTR (jvm)
- #define JVMPAR
- #define JVMPAR2
-#else /* __cplusplus */
- #define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
- #define JVMPTR (*jvm)
- #define JVMPAR jvm
- #define JVMPAR2 jvm,
-#endif /* __cplusplus */
-
/********************/
/* Local Prototypes */
/********************/
@@ -73,16 +62,19 @@ static herr_t H5E_walk_cb(int nindx, const H5E_error2_t *info, void *cb_data);
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2
- (JNIEnv *env, jclass cls, jlong stk_id)
+ (JNIEnv *env, jclass clss, jlong stk_id)
{
unsigned int is_stack = 0;
- if (stk_id < 0) {
- h5badArgument(env, "H5Eauto_is_v2: invalid argument");
- } /* end if */
- else if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eauto_is_v2: invalid stack ID");
+ if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jboolean)is_stack;
} /* end Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2 */
@@ -93,22 +85,36 @@ Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eregister_1class
- (JNIEnv *env, jclass cls, jstring cls_name, jstring lib_name, jstring version)
+ (JNIEnv *env, jclass clss, jstring cls_name, jstring lib_name, jstring version)
{
- hid_t ret_val = -1;
- const char* the_cls_name;
- const char* the_lib_name;
- const char* the_version;
-
- PIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
- if (the_cls_name != NULL && the_lib_name != NULL && the_version != NULL) {
- ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version);
-
- UNPIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
-
- if (ret_val < 0)
- h5libraryError(env);
- }
+ const char* the_cls_name = NULL;
+ const char* the_lib_name = NULL;
+ const char* the_version = NULL;
+ hid_t ret_val = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (NULL == cls_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eregister_class: class name is NULL");
+ if (NULL == lib_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eregister_class: lib name is NULL");
+ if (NULL == version)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eregister_class: version string is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name, NULL, "H5Eregister_class: class name not pinned");
+ PIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name, NULL, "H5Eregister_class: lib name not pinned");
+ PIN_JAVA_STRING(ENVONLY, version, the_version, NULL, "H5Eregister_class: version string not pinned");
+
+ if ((ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (the_version)
+ UNPIN_JAVA_STRING(ENVONLY, version, the_version);
+ if (the_lib_name)
+ UNPIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name);
+ if (the_cls_name)
+ UNPIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eregister_1class */
@@ -120,13 +126,18 @@ Java_hdf_hdf5lib_H5_H5Eregister_1class
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eunregister_1class
- (JNIEnv *env, jclass cls, jlong cls_id)
+ (JNIEnv *env, jclass clss, jlong cls_id)
{
- if (cls_id < 0) {
- h5badArgument(env, "H5Eunregister_class: invalid argument");
- } /* end if */
- else if (H5Eunregister_class((hid_t)cls_id) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (cls_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eunregister_class: invalid error class ID");
+
+ if (H5Eunregister_class((hid_t)cls_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eunregister_1class */
/*
@@ -136,13 +147,18 @@ Java_hdf_hdf5lib_H5_H5Eunregister_1class
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1msg
- (JNIEnv *env, jclass cls, jlong err_id)
+ (JNIEnv *env, jclass clss, jlong err_id)
{
- if (err_id < 0) {
- h5badArgument(env, "H5Eclose_msg: invalid argument");
- } /* end if */
- else if (H5Eclose_msg((hid_t)err_id) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (err_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_msg: invalid error message ID");
+
+ if (H5Eclose_msg((hid_t)err_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1msg */
/*
@@ -152,26 +168,27 @@ Java_hdf_hdf5lib_H5_H5Eclose_1msg
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1msg
- (JNIEnv *env, jclass cls, jlong err_id, jint msg_type, jstring err_msg)
+ (JNIEnv *env, jclass clss, jlong err_id, jint msg_type, jstring err_msg)
{
- hid_t ret_val = -1;
- const char *the_err_msg;
H5E_type_t error_msg_type = (H5E_type_t)msg_type;
+ const char *the_err_msg = NULL;
+ hid_t ret_val = H5I_INVALID_HID;
- if (err_id < 0) {
- h5badArgument(env, "H5Ecreate_msg: invalid argument");
- } /* end if */
- else {
- PIN_JAVA_STRING(err_msg, the_err_msg);
- if (the_err_msg != NULL) {
- ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg);
+ UNUSED(clss);
+
+ if (err_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ecreate_msg: invalid error class ID");
+ if (NULL == err_msg)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ecreate_msg: error message string is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg, NULL, "H5Ecreate_msg: error message string not pinned");
- UNPIN_JAVA_STRING(err_msg, the_err_msg);
+ if ((ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (ret_val < 0)
- h5libraryError(env);
- }
- } /* end else */
+done:
+ if (the_err_msg)
+ UNPIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1msg */
@@ -183,14 +200,16 @@ Java_hdf_hdf5lib_H5_H5Ecreate_1msg
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1stack
- (JNIEnv *env, jclass cls)
+ (JNIEnv *env, jclass clss)
{
- hid_t ret_val = -1;
+ hid_t ret_val = H5I_INVALID_HID;
- ret_val = H5Ecreate_stack();
- if (ret_val < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((ret_val = H5Ecreate_stack()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1stack */
@@ -201,14 +220,16 @@ Java_hdf_hdf5lib_H5_H5Ecreate_1stack
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1current_1stack
- (JNIEnv *env, jclass cls)
+ (JNIEnv *env, jclass clss)
{
- hid_t ret_val = -1;
+ hid_t ret_val = H5I_INVALID_HID;
+
+ UNUSED(clss);
- ret_val = H5Eget_current_stack();
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Eget_current_stack()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1current_1stack */
@@ -219,13 +240,18 @@ Java_hdf_hdf5lib_H5_H5Eget_1current_1stack
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1stack
- (JNIEnv *env, jclass cls, jlong stk_id)
+ (JNIEnv *env, jclass clss, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eclose_stack: invalid argument");
- } /* end if */
- else if (H5Eclose_stack((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_stack: invalid error stack ID");
+
+ if (H5Eclose_stack((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1stack */
/*
@@ -235,22 +261,26 @@ Java_hdf_hdf5lib_H5_H5Eclose_1stack
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eprint2
- (JNIEnv *env, jclass cls, jlong stk_id, jobject stream_obj)
+ (JNIEnv *env, jclass clss, jlong stk_id, jobject stream_obj)
{
- herr_t ret_val = -1;
+ herr_t ret_val = FAIL;
- if (stk_id < 0) {
- h5badArgument(env, "H5Eprint2: invalid argument");
- } /* end if */
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eprint2: invalid error stack ID");
+
+ if (!stream_obj) {
+ if ((ret_val = H5Eprint2((hid_t)stk_id, stdout)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
else {
- if(!stream_obj)
- ret_val = H5Eprint2((hid_t)stk_id, stdout);
- else
- ret_val = H5Eprint2((hid_t)stk_id, (FILE*)stream_obj);
-
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
+ if ((ret_val = H5Eprint2((hid_t)stk_id, (FILE *)stream_obj)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eprint2 */
/*
@@ -260,45 +290,38 @@ Java_hdf_hdf5lib_H5_H5Eprint2
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1class_1name
- (JNIEnv *env, jclass cls, jlong cls_id)
+ (JNIEnv *env, jclass clss, jlong cls_id)
{
- char *namePtr;
- jstring str = NULL;
- ssize_t buf_size;
+ jstring str = NULL;
+ ssize_t buf_size;
+ char *namePtr = NULL;
+
+ UNUSED(clss);
+
+ if (cls_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: invalid error class ID");
+
+ /* Get the length of the name */
+ if ((buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!buf_size)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name");
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_class_name: malloc failed");
+
+ if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (namePtr)
+ HDfree(namePtr);
- if (cls_id < 0) {
- h5badArgument(env, "H5Eget_class_name: invalid argument");
- } /* end if */
- else {
- /* get the length of the name */
- buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0);
-
- if (buf_size < 0) {
- h5badArgument( env, "H5Eget_class_name: buf_size < 0");
- } /* end if */
- else if (buf_size == 0) {
- h5badArgument( env, "H5Eget_class_name: No class name");
- } /* end else if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory( env, "H5Eget_class_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size);
-
- if (buf_size < 0) {
- HDfree(namePtr);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1class_1name */
@@ -309,13 +332,18 @@ Java_hdf_hdf5lib_H5_H5Eget_1class_1name
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eset_1current_1stack
- (JNIEnv *env, jclass cls, jlong stk_id)
+ (JNIEnv *env, jclass clss, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eset_current_stack: invalid argument");
- } /* end if */
- else if (H5Eset_current_stack((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eset_current_stack: invalid error stack ID");
+
+ if (H5Eset_current_stack((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eset_1current_1stack */
/*
@@ -325,13 +353,18 @@ Java_hdf_hdf5lib_H5_H5Eset_1current_1stack
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Epop
- (JNIEnv *env, jclass cls, jlong stk_id, jlong count)
+ (JNIEnv *env, jclass clss, jlong stk_id, jlong count)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Epop: invalid argument");
- } /* end if */
- else if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epop: invalid error stack ID");
+
+ if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Epop */
/*
@@ -341,38 +374,46 @@ Java_hdf_hdf5lib_H5_H5Epop
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Epush2
- (JNIEnv *env, jclass cls, jlong stk_id, jstring filename, jstring funcname,
+ (JNIEnv *env, jclass clss, jlong stk_id, jstring filename, jstring funcname,
jint linenumber, jlong class_id, jlong major_id, jlong minor_id, jstring err_desc)
{
- herr_t ret_val = -1;
- const char* fName;
- const char* fncName;
- const char* errMsg;
-
- if (stk_id < 0) {
- h5badArgument(env, "H5Epush: invalid argument");
- } /* end if */
- else if (class_id < 0) {
- h5badArgument(env, "H5Epush: invalid class_id argument");
- } /* end else if */
- else if (major_id < 0) {
- h5badArgument(env, "H5Epush: invalid major_id argument");
- } /* end else if */
- else if (minor_id < 0) {
- h5badArgument(env, "H5Epush: invalid minor_id argument");
- } /* end else if */
- else {
- PIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
- if (fName != NULL && fncName != NULL && errMsg != NULL) {
- ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
- (hid_t)major_id, (hid_t)minor_id, errMsg);
-
- UNPIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
-
- if (ret_val < 0)
- h5libraryError(env);
- }
- } /* end else */
+ const char *fName = NULL;
+ const char *fncName = NULL;
+ const char *errMsg = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush2: invalid error stack ID");
+ if (class_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush2: invalid error class ID");
+ if (major_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush2: invalid major error class ID");
+ if (minor_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush2: invalid minor error class ID");
+ if (NULL == filename)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Epush2: filename is NULL");
+ if (NULL == funcname)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Epush2: function name is NULL");
+ if (NULL == err_desc)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Epush2: error message is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, filename, fName, NULL, "H5Epush2: filename not pinned");
+ PIN_JAVA_STRING(ENVONLY, funcname, fncName, NULL, "H5Epush2: function name not pinned");
+ PIN_JAVA_STRING(ENVONLY, err_desc, errMsg, NULL, "H5Epush2: error message not pinned");
+
+ if ((ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
+ (hid_t)major_id, (hid_t)minor_id, errMsg)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (errMsg)
+ UNPIN_JAVA_STRING(ENVONLY, err_desc, errMsg);
+ if (fncName)
+ UNPIN_JAVA_STRING(ENVONLY, funcname, fncName);
+ if (fName)
+ UNPIN_JAVA_STRING(ENVONLY, filename, fName);
} /* end Java_hdf_hdf5lib_H5_H5Epush2 */
/*
@@ -382,13 +423,18 @@ Java_hdf_hdf5lib_H5_H5Epush2
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclear2
- (JNIEnv *env, jclass cls, jlong stk_id)
+ (JNIEnv *env, jclass clss, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eclear2: invalid argument");
- } /* end if */
- else if (H5Eclear2((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclear2: invalid error stack ID");
+
+ if (H5Eclear2((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclear2 */
/*
@@ -398,59 +444,47 @@ Java_hdf_hdf5lib_H5_H5Eclear2
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1msg
- (JNIEnv *env, jclass cls, jlong msg_id, jintArray error_msg_type_list)
+ (JNIEnv *env, jclass clss, jlong msg_id, jintArray error_msg_type_list)
{
- char *namePtr;
- jstring str = NULL;
- jboolean isCopy;
- ssize_t buf_size;
- jint *theArray;
- H5E_type_t error_msg_type;
-
- if (msg_id < 0) {
- h5badArgument(env, "H5Eget_msg: invalid argument");
- } /* end if */
- else if (error_msg_type_list == NULL) {
- h5nullArgument(env, "H5Eget_msg: error_msg_type_list is NULL");
- } /* end if */
- else {
- /* get the length of the name */
- buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0);
-
- if ((buf_size < 0) || (buf_size == 0)) {
- h5JNIFatalError(env, "H5Eget_msg: Invalid message");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory(env, "H5Eget_msg: malloc failed");
- } /* end if */
- else {
- theArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR error_msg_type_list, &isCopy);
- if (theArray == NULL) {
- HDfree(namePtr);
- h5JNIFatalError(env, "H5Eget_msg: error_msg_type_list not pinned");
- } /* end if */
- else {
- buf_size = H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size);
-
- if (buf_size < 0) {
- HDfree(namePtr);
- ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = error_msg_type;
- ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, 0);
-
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ H5E_type_t error_msg_type;
+ jstring str = NULL;
+ ssize_t buf_size;
+ jint *theArray = NULL;
+ char *namePtr = NULL;
+
+ UNUSED(clss);
+
+ if (msg_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid error message ID");
+ if (NULL == error_msg_type_list)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: error_msg_type_list is NULL");
+
+ /* Get the length of the name */
+ if ((buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!buf_size)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: invalid message");
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: malloc failed");
+
+ PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned");
+
+ if ((H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ theArray[0] = error_msg_type;
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, 0);
+ if (namePtr)
+ HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1msg */
@@ -462,18 +496,19 @@ Java_hdf_hdf5lib_H5_H5Eget_1msg
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1num
- (JNIEnv *env, jclass cls, jlong stk_id)
+ (JNIEnv *env, jclass clss, jlong stk_id)
{
ssize_t ret_val = -1;
- if (stk_id < 0) {
- h5badArgument(env, "H5Eget_num: invalid argument");
- } /* end if */
- else {
- ret_val = H5Eget_num((hid_t)stk_id);
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
+ UNUSED(clss);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_num: invalid error stack ID");
+
+ if ((ret_val = H5Eget_num((hid_t)stk_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1num */
@@ -481,52 +516,67 @@ static herr_t
H5E_walk_cb
(int nindx, const H5E_error2_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str1, str2, str3;
- jmethodID constructor;
- jvalue args[7];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I");
- if (mid != 0) {
- args[0].j = info->cls_id;
- args[1].j = info->maj_num;
- args[2].j = info->min_num;
- args[3].i = (jint)info->line;
- str1 = CBENVPTR->NewStringUTF(CBENVPAR info->func_name);
- args[4].l = str1;
- str2 = CBENVPTR->NewStringUTF(CBENVPAR info->file_name);
- args[5].l = str2;
- str3 = CBENVPTR->NewStringUTF(CBENVPAR info->desc);
- args[6].l = str3;
- // get a reference to your class if you don't have it already
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5E_error2_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5E_error2_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, nindx, cb_info_t, op_data);
- }
- } /* end if (constructor != 0) */
- } /* end if(cls != 0) */
- } /* end if (mid != 0) */
- } /* end if (cls != 0) */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ jmethodID constructor;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str1, str2, str3;
+ jobject cb_info_t = NULL;
+ jvalue args[7];
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ void *op_data = (void *)wrapper->op_data;
+ jint status = FAIL;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5E_walk_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].j = info->cls_id;
+ args[1].j = info->maj_num;
+ args[2].j = info->min_num;
+ args[3].i = (jint)info->line;
+
+ if (NULL == (str1 = CBENVPTR->NewStringUTF(CBENVONLY, info->func_name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[4].l = str1;
+
+ if (NULL == (str2 = CBENVPTR->NewStringUTF(CBENVONLY, info->file_name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[5].l = str2;
+
+ if (NULL == (str3 = CBENVPTR->NewStringUTF(CBENVONLY, info->desc)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[6].l = str3;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, nindx, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (CBENVONLY)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
return (herr_t)status;
} /* end H5E_walk_cb */
@@ -537,17 +587,25 @@ H5E_walk_cb
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ewalk2
- (JNIEnv *env, jclass cls, jlong stk_id, jlong direction, jobject callback_op, jobject op_data)
+ (JNIEnv *env, jclass clss, jlong stk_id, jlong direction, jobject callback_op, jobject op_data)
{
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: callback_op is NULL");
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void *)&wrapper) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Ewalk2: op_data or callback_op is NULL");
- } /* end if */
- else if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void*)&wrapper) < 0)
- h5libraryError(env);
+done:
+ return;
} /* end iJava_hdf_hdf5lib_H5_H5Ewalk2f */
#ifdef __cplusplus
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index 80adffb..4fd6807 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -28,7 +28,10 @@ extern "C" {
#include "h5fImp.h"
#include "h5util.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -39,18 +42,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fopen
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id)
{
- hid_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fopen: file name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fopen: file name not pinned");
+
+ if ((status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fopen */
@@ -64,18 +71,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fcreate
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, jlong access_id)
{
- hid_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fcreate: file name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fcreate: file name not pinned");
+
+ if ((status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fcreate */
@@ -89,12 +100,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fflush
(JNIEnv *env, jclass clss, jlong object_id, jint scope)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope );
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Fflush */
@@ -105,36 +118,31 @@ Java_hdf_hdf5lib_H5_H5Fflush
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1name
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
- char *namePtr;
- jstring str = NULL;
- ssize_t buf_size;
-
- /* get the length of the name */
- buf_size = H5Fget_name((hid_t)file_id, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5Fget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory(env, "H5Fget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size);
- if (buf_size < 0) {
- HDfree(namePtr);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- }/* end else */
- }/* end else */
- }/* end else */
+ jstring str = NULL;
+ ssize_t buf_size;
+ char *namePtr = NULL;
+
+ UNUSED(clss);
+
+ /* Get the length of the name */
+ if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed");
+
+ if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (namePtr)
+ HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1name */
@@ -148,24 +156,29 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1hdf5
(JNIEnv *env, jclass clss, jstring name)
{
+ const char *fileName = NULL;
htri_t bval = JNI_FALSE;
+
+ UNUSED(clss);
+
#ifdef H5_NO_DEPRECATED_SYMBOLS
- h5unimplemented(env, "H5Fis_hdf5: not implemented");
-#else
- const char *fileName;
+ H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented");
+#endif
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- bval = H5Fis_hdf5(fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fis_hdf5: file name is NULL");
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_hdf5: file name not pinned");
+
+ if ((bval = H5Fis_hdf5(fileName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
-#endif
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */
@@ -178,20 +191,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv *env, jclass clss, jstring name, jlong file_id)
{
+ const char *fileName = NULL;
htri_t bval = JNI_FALSE;
- const char *fileName;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- bval = H5Fis_accessible(fileName, (hid_t)file_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fis_accessible: file name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_accessible: file name not pinned");
+
+ if ((bval = H5Fis_accessible(fileName, (hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1accessible */
@@ -205,12 +222,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Fget_create_plist((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Fget_create_plist((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist */
@@ -223,12 +242,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Fget_access_plist((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Fget_access_plist((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist */
@@ -239,18 +260,41 @@ Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1intent
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
unsigned intent = 0;
+ UNUSED(clss);
+
if (H5Fget_intent((hid_t)file_id, &intent) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)intent;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1intent */
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Fget_fileno
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Fget_1fileno
+ (JNIEnv *env, jclass clss, jlong file_id)
+{
+ unsigned long fileno = 0;
+
+ UNUSED(clss);
+
+ if (H5Fget_fileno((hid_t)file_id, &fileno) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)fileno;
+} /* end Java_hdf_hdf5lib_H5_H5Fget_1fileno */
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: H5Fclose
* Signature: (J)I
*/
@@ -258,14 +302,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Fclose
(JNIEnv *env, jclass clss, jlong file_id)
{
- herr_t status = -1;
+ herr_t status = FAIL;
- if (file_id > 0)
- status = H5Fclose((hid_t)file_id );
+ UNUSED(clss);
- if (status < 0)
- h5libraryError(env);
+ if ((status = H5Fclose((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fclose */
@@ -278,18 +322,22 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, jlong plist_id)
{
- herr_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fmount: file name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fmount: file name not pinned");
+
+ if ((status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Fmount */
@@ -303,18 +351,22 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Funmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- herr_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Funmount((hid_t)loc_id, fileName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Funmount: file name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Funmount: file name not pinned");
+
+ if ((status = H5Funmount((hid_t)loc_id, fileName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Funmount */
@@ -326,13 +378,16 @@ Java_hdf_hdf5lib_H5_H5Funmount
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1freespace
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
- hssize_t ret_val = H5Fget_freespace((hid_t)file_id);
+ hssize_t ret_val = -1;
+
+ UNUSED(clss);
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Fget_freespace((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1freespace */
@@ -345,12 +400,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Freopen
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Freopen((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Freopen((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Freopen */
@@ -361,50 +418,43 @@ Java_hdf_hdf5lib_H5__1H5Freopen
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids
- (JNIEnv *env, jclass cls, jlong file_id, jint types, jlong maxObjs,
+ (JNIEnv *env, jclass clss, jlong file_id, jint types, jlong maxObjs,
jlongArray obj_id_list)
{
- ssize_t ret_val = -1;
- jlong *obj_id_listP;
- jboolean isCopy;
- hid_t *id_list;
- size_t rank;
- size_t i;
-
- if (obj_id_list == NULL) {
- h5nullArgument(env, "H5Fget_obj_ids: obj_id_list is NULL");
- } /* end if */
- else {
- obj_id_listP = ENVPTR->GetLongArrayElements(ENVPAR obj_id_list, &isCopy);
- if (obj_id_listP == NULL) {
- h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not pinned");
- } /* end if */
- else {
- rank = (size_t)ENVPTR->GetArrayLength(ENVPAR obj_id_list);
-
- id_list = (hid_t *)HDmalloc(rank * sizeof(hid_t));
- if (id_list == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
- h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not converted to hid_t");
- } /* end if */
- else {
- ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list);
-
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
- HDfree(id_list);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- obj_id_listP[i] = (jlong)id_list[i];
- } /* end for */
- HDfree(id_list);
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ ssize_t ret_val = -1;
+ size_t i;
+ jsize rank;
+ jlong *obj_id_listP = NULL;
+ hid_t *id_list = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == obj_id_list)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, &isCopy, "H5Fget_obj_ids: obj_id_list not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, obj_id_list)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0");
+ }
+
+ if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed");
+
+ if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t)rank; i++) {
+ obj_id_listP[i] = (jlong)id_list[i];
+ } /* end for */
+
+done:
+ if (id_list)
+ HDfree(id_list);
+ if (obj_id_listP)
+ UNPIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, (ret_val < 0) ? JNI_ABORT : 0);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids */
@@ -416,13 +466,16 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1obj_1count
- (JNIEnv *env, jclass cls, jlong file_id, jint types)
+ (JNIEnv *env, jclass clss, jlong file_id, jint types)
{
- ssize_t ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types);
+ ssize_t ret_val = -1;
+
+ UNUSED(clss);
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1count_1long */
@@ -437,9 +490,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize
{
hsize_t size = 0;
- if (H5Fget_filesize ((hid_t)file_id, &size) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5Fget_filesize((hid_t)file_id, &size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong) size;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1filesize */
@@ -450,13 +506,16 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize
*/
JNIEXPORT jdouble JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
double rate = 0.0;
+ UNUSED(clss);
+
if (H5Fget_mdc_hit_rate((hid_t)file_id, &rate) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jdouble)rate;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate */
@@ -467,35 +526,39 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size
- (JNIEnv *env, jclass cls, jlong file_id, jlongArray metadata_cache)
+ (JNIEnv *env, jclass clss, jlong file_id, jlongArray metadata_cache)
{
- jint size = 0;
- jlong *metadata_cache_ptr;
- size_t max_size = 0, min_clean_size = 0, cur_size = 0;
- int cur_num_entries = -1;
- jboolean isCopy;
-
- if (metadata_cache == NULL) {
- h5nullArgument(env, "H5Fget_mdc_size: metadata_cache is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR metadata_cache);
- if (size < 3) {
- h5badArgument(env, "H5Fget_mdc_size: length of metadata_cache < 3.");
- } /* end if */
- else {
- if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- metadata_cache_ptr = ENVPTR->GetLongArrayElements(ENVPAR metadata_cache, &isCopy);
- metadata_cache_ptr[0] = (jlong)max_size;
- metadata_cache_ptr[1] = (jlong)min_clean_size;
- metadata_cache_ptr[2] = (jlong)cur_size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR metadata_cache, metadata_cache_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ size_t max_size = 0, min_clean_size = 0, cur_size = 0;
+ jlong *metadata_cache_ptr = NULL;
+ jsize size = 0;
+ int cur_num_entries = -1;
+
+ UNUSED(clss);
+
+ if (NULL == metadata_cache)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata cache array is NULL");
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, metadata_cache)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata_cache length < 0");
+ }
+
+ if (size < 3)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: length of metadata_cache array < 3");
+
+ if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, "H5Fget_mdc_size: metadata_cache array not pinned");
+
+ metadata_cache_ptr[0] = (jlong)max_size;
+ metadata_cache_ptr[1] = (jlong)min_clean_size;
+ metadata_cache_ptr[2] = (jlong)cur_size;
+
+done:
+ if (metadata_cache_ptr)
+ UNPIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, 0);
return (jint)cur_num_entries;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size */
@@ -509,31 +572,36 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1info
(JNIEnv *env, jclass clss, jlong obj_id)
{
- H5F_info2_t finfo;
- jvalue args[9];
+ H5F_info2_t finfo;
jobject ihinfobuf;
+ jvalue args[9];
jobject ret_obj = NULL;
- if (H5Fget_info2((hid_t)obj_id, &finfo) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
- args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf = ret_obj;
-
- args[0].i = (jint)finfo.super.version;
- args[1].j = (jlong)finfo.super.super_size;
- args[2].j = (jlong)finfo.super.super_ext_size;
- args[3].i = (jint)finfo.free.version;
- args[4].j = (jlong)finfo.free.meta_size;
- args[5].j = (jlong)finfo.free.tot_space;
- args[6].j = (jint)finfo.sohm.version;
- args[7].j = (jlong)finfo.sohm.hdr_size;
- args[8].l = ihinfobuf;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- } /* end else */
+ UNUSED(clss);
+
+ if (H5Fget_info2((hid_t)obj_id, &finfo) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
+ args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+
+ ihinfobuf = ret_obj;
+
+ args[0].i = (jint)finfo.super.version;
+ args[1].j = (jlong)finfo.super.super_size;
+ args[2].j = (jlong)finfo.super.super_ext_size;
+ args[3].i = (jint)finfo.free.version;
+ args[4].j = (jlong)finfo.free.meta_size;
+ args[5].j = (jlong)finfo.free.tot_space;
+ args[6].j = (jint)finfo.sohm.version;
+ args[7].j = (jlong)finfo.sohm.hdr_size;
+ args[8].l = ihinfobuf;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1info */
@@ -544,10 +612,15 @@ Java_hdf_hdf5lib_H5_H5Fget_1info
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
+ UNUSED(clss);
+
if (H5Freset_mdc_hit_rate_stats((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats */
/*
@@ -557,10 +630,15 @@ Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
+ UNUSED(clss);
+
if (H5Fclear_elink_file_cache((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache */
/*
@@ -570,10 +648,15 @@ Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
+ UNUSED(clss);
+
if (H5Fstart_swmr_write((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write */
/*
@@ -583,10 +666,15 @@ Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
+ UNUSED(clss);
+
if (H5Fstart_mdc_logging((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging */
/*
@@ -596,10 +684,15 @@ Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
- (JNIEnv *env, jclass cls, jlong file_id)
+ (JNIEnv *env, jclass clss, jlong file_id)
{
+ UNUSED(clss);
+
if (H5Fstop_mdc_logging((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging */
/*
@@ -609,34 +702,40 @@ Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
- (JNIEnv *env, jclass cls, jlong file_id, jbooleanArray mdc_logging_status)
+ (JNIEnv *env, jclass clss, jlong file_id, jbooleanArray mdc_logging_status)
{
+ jboolean *mdc_logging_status_ptr = NULL;
+ jboolean isCopy;
hbool_t is_enabled;
hbool_t is_currently_logging;
- jboolean *mdc_logging_status_ptr;
- jint size;
- jboolean isCopy;
+ jsize size;
+
+ UNUSED(clss);
+
+ if (NULL == mdc_logging_status)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
- if (mdc_logging_status == NULL) {
- h5nullArgument(env, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_logging_status);
- if (size < 2) {
- h5badArgument(env, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2.");
- } /* end if */
- else {
- if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mdc_logging_status_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_logging_status, &isCopy);
- mdc_logging_status_ptr[0] = (jboolean)is_enabled;
- mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_logging_status, mdc_logging_status_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, mdc_logging_status)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status length < 0");
+ }
+
+ if (size < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2");
+
+ if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, "H5Fget_mdc_logging_status: mdc_logging_status array not pinned");
+
+ mdc_logging_status_ptr[0] = (jboolean)is_enabled;
+ mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
+
+done:
+ if (mdc_logging_status_ptr)
+ UNPIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status */
/*
@@ -648,17 +747,18 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize)
{
- herr_t retVal = -1;
- hbool_t minimize_val;
+ hbool_t minimize_val;
+ herr_t retVal = FAIL;
- if (minimize == JNI_TRUE)
- minimize_val = TRUE;
- else
- minimize_val = FALSE;
+ UNUSED(clss);
- retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val);
- if (retVal < 0)
- h5libraryError(env);
+ minimize_val = (minimize == JNI_TRUE) ? TRUE : FALSE;
+
+ if ((retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/*
@@ -670,17 +770,18 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id)
{
- hbool_t minimize = FALSE;
- jboolean bval = JNI_FALSE;
+ jboolean bval = JNI_FALSE;
+ hbool_t minimize = FALSE;
- if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0) {
- h5libraryError(env);
- }
- else {
- if (minimize == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+ UNUSED(clss);
+
+ if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (minimize == TRUE)
+ bval = JNI_TRUE;
+
+done:
return bval;
}
@@ -693,11 +794,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds
(JNIEnv *env, jclass clss, jlong file_id, jint low, jint high)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds */
diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h
index fe253f9..fc02c76 100644
--- a/java/src/jni/h5fImp.h
+++ b/java/src/jni/h5fImp.h
@@ -72,7 +72,7 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5
* Signature: (Ljava/lang/String;J)Z
*/
JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Fis_1ccessible
+Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv*, jclass, jstring, jlong);
/*
@@ -104,6 +104,15 @@ Java_hdf_hdf5lib_H5_H5Fget_1intent
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Fget_fileno
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Fget_1fileno
+ (JNIEnv*, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: H5Fclose
* Signature: (J)I
*/
diff --git a/java/src/jni/h5gImp.c b/java/src/jni/h5gImp.c
index 42c042a..79b1b65 100644
--- a/java/src/jni/h5gImp.c
+++ b/java/src/jni/h5gImp.c
@@ -29,7 +29,10 @@ extern "C" {
#include "h5util.h"
#include "h5gImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,12 +43,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Gclose
(JNIEnv *env, jclass clss, jlong group_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Gclose((hid_t)group_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Gclose((hid_t)group_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Gclose */
@@ -63,33 +68,46 @@ jobject
create_H5G_info_t
(JNIEnv *env, H5G_info_t group_info)
{
- jclass cls;
+ jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
jboolean jmounted;
+ jclass cls;
jint storage_type;
jobject obj = NULL;
- jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
- cls = ENVPTR->FindClass(ENVPAR "hdf/hdf5lib/structs/H5G_info_t");
- if (cls != NULL) {
- obj = ENVPTR->AllocObject(ENVPAR cls);
- if (obj != NULL) {
- if ((fid_storage_type = ENVPTR->GetFieldID(ENVPAR cls, "storage_type", "I")) != NULL) {
- if ((fid_nlinks = ENVPTR->GetFieldID(ENVPAR cls, "nlinks", "J")) != NULL) {
- if ((fid_max_corder = ENVPTR->GetFieldID(ENVPAR cls, "max_corder", "J")) != NULL) {
- if ((fid_mounted = ENVPTR->GetFieldID(ENVPAR cls, "mounted", "Z")) != NULL) {
- jmounted = (group_info.mounted==0) ? JNI_FALSE : JNI_TRUE;
- storage_type = (jint)group_info.storage_type;
-
- ENVPTR->SetIntField(ENVPAR obj, fid_storage_type, (jint)storage_type);
- ENVPTR->SetLongField(ENVPAR obj, fid_nlinks, (jlong)group_info.nlinks);
- ENVPTR->SetLongField(ENVPAR obj, fid_max_corder, (jlong)group_info.max_corder);
- ENVPTR->SetBooleanField(ENVPAR obj, fid_mounted, jmounted);
- }
- }
- }
- }
- }
- }
+ if (NULL == (cls = ENVPTR->FindClass(ENVONLY, "hdf/hdf5lib/structs/H5G_info_t")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (obj = ENVPTR->AllocObject(ENVONLY, cls)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_storage_type = ENVPTR->GetFieldID(ENVONLY, cls, "storage_type", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_nlinks = ENVPTR->GetFieldID(ENVONLY, cls, "nlinks", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_max_corder = ENVPTR->GetFieldID(ENVONLY, cls, "max_corder", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_mounted = ENVPTR->GetFieldID(ENVONLY, cls, "mounted", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE;
+ storage_type = (jint)group_info.storage_type;
+
+ ENVPTR->SetIntField(ENVONLY, obj, fid_storage_type, (jint)storage_type);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetLongField(ENVONLY, obj, fid_nlinks, (jlong)group_info.nlinks);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetLongField(ENVONLY, obj, fid_max_corder, (jlong)group_info.max_corder);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetBooleanField(ENVONLY, obj, fid_mounted, jmounted);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
return obj;
} /* end create_H5G_info_t */
@@ -103,17 +121,22 @@ Java_hdf_hdf5lib_H5__1H5Gcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- hid_t group_id = -1;
- const char *gName;
+ const char *grpName = NULL;
+ hid_t group_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- group_id = H5Gcreate2((hid_t)loc_id, gName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, gName);
- if (group_id < 0)
- h5libraryError(env);
- }
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gcreate2: group name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gcreate2: group name not pinned");
+
+ if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate2 */
@@ -125,14 +148,16 @@ Java_hdf_hdf5lib_H5__1H5Gcreate2
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gcreate_1anon
- (JNIEnv *env, jclass cls, jlong loc_id, jlong gcpl_id, jlong gapl_id)
+ (JNIEnv *env, jclass clss, jlong loc_id, jlong gcpl_id, jlong gapl_id)
{
- hid_t group_id = -1;
+ hid_t group_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
- group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id);
- if (group_id < 0)
- h5libraryError(env);
+ if ((group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate_1anon */
@@ -145,18 +170,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
- hid_t group_id = -1;
- const char *gName;
+ const char *grpName = NULL;
+ hid_t group_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- group_id = H5Gopen2((hid_t)loc_id, gName, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, gName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gopen2: group name is NULL");
- if (group_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gopen2: group name not pinned");
+
+ if ((group_id = H5Gopen2((hid_t)loc_id, grpName, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gopen2 */
@@ -169,13 +198,16 @@ Java_hdf_hdf5lib_H5__1H5Gopen2
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1create_1plist
- (JNIEnv *env, jclass cls, jlong loc_id)
+ (JNIEnv *env, jclass clss, jlong loc_id)
{
- hid_t plist_id = H5Gget_create_plist((hid_t)loc_id);
+ hid_t plist_id = H5I_INVALID_HID;
- if (plist_id < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((plist_id = H5Gget_create_plist((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)plist_id;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1create_1plist */
@@ -186,16 +218,20 @@ Java_hdf_hdf5lib_H5_H5Gget_1create_1plist
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info
- (JNIEnv *env, jclass cls, jlong loc_id)
+ (JNIEnv *env, jclass clss, jlong loc_id)
{
- jobject obj = NULL;
H5G_info_t group_info;
+ jobject obj = NULL;
+
+ UNUSED(clss);
if (H5Gget_info((hid_t)loc_id, &group_info) < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (obj = create_H5G_info_t(env, group_info)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info: unable to create H5G_info_t object");
+done:
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info */
@@ -206,25 +242,32 @@ Java_hdf_hdf5lib_H5_H5Gget_1info
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name
- (JNIEnv *env, jclass cls, jlong loc_id, jstring name, jlong lapl_id)
+ (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong lapl_id)
{
- jobject obj = NULL;
- herr_t ret_val = -1;
- const char *gName;
H5G_info_t group_info;
+ const char *grpName = NULL;
+ jobject obj = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- ret_val = H5Gget_info_by_name((hid_t)loc_id, gName, &group_info, (hid_t)lapl_id);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_info_by_name: group name is NULL");
- UNPIN_JAVA_STRING(name, gName);
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_name: group name not pinned");
- if (ret_val < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ if ((ret_val = H5Gget_info_by_name((hid_t)loc_id, grpName, &group_info, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (obj = create_H5G_info_t(env, group_info))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_name: unable to create H5G_info_t object");
}
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name */
@@ -235,29 +278,36 @@ Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
- (JNIEnv *env, jclass cls, jlong loc_id, jstring name, jint index_type,
+ (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_type,
jint order, jlong n, jlong lapl_id)
{
- jobject obj = NULL;
- herr_t ret_val = -1;
- const char *gName;
- H5G_info_t group_info;
- H5_index_t cindex_type = (H5_index_t)index_type;
- H5_iter_order_t corder = (H5_iter_order_t)order;
-
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- ret_val = H5Gget_info_by_idx((hid_t)loc_id, gName, cindex_type,
- corder, (hsize_t)n, &group_info, (hid_t)lapl_id);
-
- UNPIN_JAVA_STRING(name, gName);
-
- if (ret_val < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ H5_iter_order_t corder = (H5_iter_order_t)order;
+ H5_index_t cindex_type = (H5_index_t)index_type;
+ H5G_info_t group_info;
+ const char *grpName = NULL;
+ jobject obj = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_info_by_idx: group name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_idx: group name not pinned");
+
+ if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type,
+ corder, (hsize_t)n, &group_info, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (obj = create_H5G_info_t(env, group_info))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_idx: unable to create H5G_info_t object");
}
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx */
@@ -270,8 +320,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Gflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Gflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Gflush */
/*
@@ -283,8 +338,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Grefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Grefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Grefresh */
diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c
index b8bd1cd..a367802 100644
--- a/java/src/jni/h5iImp.c
+++ b/java/src/jni/h5iImp.c
@@ -27,7 +27,10 @@ extern "C" {
#include "h5jni.h"
#include "h5iImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,10 +43,12 @@ Java_hdf_hdf5lib_H5_H5Iget_1type
{
H5I_type_t retVal = H5I_BADID;
- retVal = H5Iget_type((hid_t)obj_id);
- if (retVal == H5I_BADID)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5I_BADID == (retVal = H5Iget_type((hid_t)obj_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type */
@@ -56,32 +61,32 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name_1long
(JNIEnv *env, jclass clss, jlong obj_id, jobjectArray name, jlong buf_size)
{
- char *aName;
- jstring str;
- hssize_t size = -1;
- long bs;
-
- bs = (long)buf_size;
- if (bs <= 0) {
- h5badArgument(env, "H5Iget_name: buf_size <= 0");
- } /* end if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Iget_name: malloc failed");
- } /* end if */
- else {
- size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
- if (size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
- }
- HDfree(aName);
- }
- }
+ ssize_t size = -1;
+ jstring str;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ if (buf_size < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name_long: malloc failed");
+
+ if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+
return (jlong)size;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -95,33 +100,30 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name
(JNIEnv *env, jclass clss, jlong obj_id)
{
- char *aName;
jstring str = NULL;
- ssize_t buf_size;
-
- /* get the length of the name */
- buf_size = H5Iget_name((hid_t)obj_id, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5Iget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Iget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
- if (buf_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- }
- HDfree(aName);
- }
- }
+ ssize_t buf_size = -1;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ /* Get the length of the name */
+ if ((buf_size = H5Iget_name((hid_t)obj_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name: malloc failed");
+
+ if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+
return str;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -134,12 +136,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Iget_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Iget_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1ref */
@@ -152,12 +156,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Iinc_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Iinc_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1ref */
@@ -170,12 +176,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Idec_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Idec_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1ref */
@@ -189,12 +197,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1file_1id
(JNIEnv *env, jclass clss, jlong obj_id)
{
- hid_t file_id = -1;
+ hid_t file_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
- file_id = H5Iget_file_id((hid_t)obj_id);
- if (file_id < 0)
- h5libraryError(env);
+ if ((file_id = H5Iget_file_id((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) file_id;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1file_1id */
@@ -207,12 +217,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Iget_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Iget_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type_1ref */
@@ -225,12 +237,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Idec_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Idec_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1type_1ref */
@@ -243,12 +257,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Iinc_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Iinc_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref */
@@ -261,11 +277,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Inmembers
(JNIEnv *env, jclass clss, jint type)
{
- hsize_t num_members;
+ hsize_t num_members = 0;
+
+ UNUSED(clss);
if (H5Inmembers((H5I_type_t)type, &num_members) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)num_members;
} /* end Java_hdf_hdf5lib_H5_H5Inmembers */
@@ -280,12 +299,14 @@ Java_hdf_hdf5lib_H5_H5Iis_1valid
{
htri_t bval = JNI_FALSE;
- bval = H5Iis_valid((hid_t)obj_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Iis_valid((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Iis_1valid */
/*
@@ -299,12 +320,14 @@ Java_hdf_hdf5lib_H5_H5Itype_1exists
{
htri_t bval = JNI_FALSE;
- bval = H5Itype_exists((H5I_type_t)type);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Itype_exists((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end else Java_hdf_hdf5lib_H5_H5Itype_1exists */
@@ -317,8 +340,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Iclear_1type
(JNIEnv *env, jclass clss, jint type, jboolean force)
{
- if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Iclear_1type */
/*
@@ -330,8 +358,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Idestroy_1type
(JNIEnv *env, jclass clss, jint type)
{
- if (H5Idestroy_type((H5I_type_t)type) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Idestroy_type((H5I_type_t)type) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Idestroy_1type */
#ifdef __cplusplus
diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h
index 2970e14..4a94180 100644
--- a/java/src/jni/h5jni.h
+++ b/java/src/jni/h5jni.h
@@ -27,147 +27,299 @@
#ifdef __cplusplus
#define ENVPTR (env)
- #define ENVPAR
#define ENVONLY
#define CBENVPTR (cbenv)
- #define CBENVPAR
+ #define CBENVONLY
#define JVMPTR (jvm)
#define JVMPAR
- #define JVMPAR2
#else /* __cplusplus */
#define ENVPTR (*env)
- #define ENVPAR env,
#define ENVONLY env
#define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
+ #define CBENVONLY cbenv
#define JVMPTR (*jvm)
#define JVMPAR jvm
- #define JVMPAR2 jvm,
#endif /* __cplusplus */
+/*
+ * Used to silence compiler when a particular
+ * function parameter is not used.
+ */
+#define UNUSED(o) (void) o
+
/* Macros for class access */
/* Calling code must define ret_obj as jobject */
-#define CALL_CONSTRUCTOR(classname,classsig,args) { \
- jclass cls; \
- jmethodID constructor; \
- cls = ENVPTR->FindClass(ENVPAR (classname)); \
- if (cls == 0) { \
- h5JNIFatalError(env, "JNI error: GetObjectClass\n"); \
- ret_obj = NULL; \
- } \
- constructor = ENVPTR->GetMethodID(ENVPAR cls, "<init>", (classsig)); \
- if (constructor == 0) { \
- h5JNIFatalError(env, "JNI error: GetMethodID failed\n"); \
- ret_obj = NULL; \
- } \
- ret_obj = ENVPTR->NewObjectA(ENVPAR cls, constructor, (args)); \
+#define CALL_CONSTRUCTOR(env, classname, classsig, args, ret_obj) \
+{ \
+ jmethodID constructor; \
+ jclass cls; \
+ \
+ if (NULL == (cls = ENVPTR->FindClass(env, (classname)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, "JNI error: GetObjectClass"); \
+ } \
+ if (NULL == (constructor = ENVPTR->GetMethodID(ENVONLY, cls, "<init>", (classsig)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, "JNI error: GetMethodID failed"); \
+ } \
+ if (NULL == (ret_obj = ENVPTR->NewObjectA(ENVONLY, cls, constructor, (args)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_FALSE); \
+ } \
+}
+
+/*
+ * Macros for pinning/unpinning objects.
+ */
+#define PIN_BYTE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetByteArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_BYTE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jbyte *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_BYTE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseByteArrayElements(env, pinnedArray, (jbyte *) bufToRelease, freeMode); \
+}
+
+#define PIN_SHORT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetShortArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_SHORT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jshort *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_SHORT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseShortArrayElements(env, pinnedArray, (jshort *) bufToRelease, freeMode); \
+}
+
+#define PIN_INT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetIntArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_INT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jint *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_INT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseIntArrayElements(env, pinnedArray, (jint *) bufToRelease, freeMode); \
+}
+
+#define PIN_LONG_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetLongArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_LONG_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jlong *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_LONG_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseLongArrayElements(env, pinnedArray, (jlong *) bufToRelease, freeMode); \
+}
+
+#define PIN_FLOAT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetFloatArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_FLOAT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jfloat *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_FLOAT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseFloatArrayElements(env, pinnedArray, (jfloat *) bufToRelease, freeMode); \
+}
+
+#define PIN_DOUBLE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetDoubleArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_DOUBLE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jdouble *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_DOUBLE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseDoubleArrayElements(env, pinnedArray, (jdouble *) bufToRelease, freeMode); \
+}
+
+#define PIN_BOOL_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetBooleanArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_BOOL_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jboolean *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
}
+#define UNPIN_BOOL_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseBooleanArrayElements(env, pinnedArray, (jboolean *) bufToRelease, freeMode); \
+}
+
+#define UNPIN_ARRAY_CRITICAL(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleasePrimitiveArrayCritical(env, pinnedArray, bufToRelease, freeMode); \
+}
/* Macros for string access */
-#define PIN_JAVA_STRING(javastr,localstr) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING(javastr,localstr) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
-}
-
-#define PIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- (local2str) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else if ((java2str) == NULL) { \
- h5nullArgument(env, "second java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- else { \
- (local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
- if ((local2str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- h5JNIFatalError(env, "second local c string is not pinned"); \
- } \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
-}
-
-#define PIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- (local2str) = NULL; \
- (local3str) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else if ((java2str) == NULL) { \
- h5nullArgument(env, "second java string is NULL"); \
- } \
- else if ((java3str) == NULL) { \
- h5nullArgument(env, "third java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- else { \
- (local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
- if ((local2str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- h5JNIFatalError(env, "second local c string is not pinned"); \
- } \
- else { \
- (local3str) = ENVPTR->GetStringUTFChars(ENVPAR (java3str), &isCopy); \
- if ((local3str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
- h5JNIFatalError(env, "third local c string is not pinned"); \
- } \
- } \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java3str), (local3str)); \
+#define PIN_JAVA_STRING(env, stringToPin, outString, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outString = ENVPTR->GetStringUTFChars(env, stringToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_JAVA_STRING(env, pinnedString, stringToRelease) \
+{ \
+ ENVPTR->ReleaseStringUTFChars(env, pinnedString, stringToRelease); \
+}
+
+/*
+ * Macro to check for a JNI exception after a JNI method is called.
+ * If an exception occurred, the value of 'clearException' will determine
+ * whether or not the exception will be cleared in order for the native
+ * method to do its own error handling.
+ *
+ * If the exception does not get cleared, this macro will skip to the
+ * cleanup+return section of the native method, since at that point
+ * cleaning up and returning is the only safe thing that can be done.
+ */
+#define CHECK_JNI_EXCEPTION(env, clearException) \
+{ \
+ if (JNI_TRUE == (*env)->ExceptionCheck(env)) { \
+ if (JNI_TRUE == clearException) \
+ (*env)->ExceptionClear(env); \
+ else \
+ goto done; \
+ } \
}
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
-extern jboolean h5JNIFatalError(JNIEnv *, const char *);
-extern jboolean h5nullArgument(JNIEnv *, const char *);
-extern jboolean h5badArgument (JNIEnv *, const char *);
-extern jboolean h5outOfMemory (JNIEnv *, const char *);
-extern jboolean h5libraryError(JNIEnv *env );
-extern jboolean h5raiseException(JNIEnv *, const char *, const char *);
+extern jboolean h5JNIFatalError(JNIEnv *env, const char *);
+extern jboolean h5nullArgument(JNIEnv *env, const char *);
+extern jboolean h5badArgument(JNIEnv *env, const char *);
+extern jboolean h5outOfMemory(JNIEnv *env, const char *);
+extern jboolean h5libraryError(JNIEnv *env);
+extern jboolean h5raiseException(JNIEnv *env, const char *, const char *);
extern jboolean h5unimplemented( JNIEnv *env, const char *functName);
+/*
+ * The following macros are to facilitate immediate cleanup+return
+ * from a native JNI method when an exception is to be thrown.
+ * Since, in general, the "cleanup" methods are the only safe JNI
+ * methods to call once an exception has occurred, we want to immediately
+ * cleanup and return instead of letting the native method continue.
+ *
+ * Note that a native method can clear the exception when one occurs and
+ * then do its own error handling, but we instead opt to immediately return.
+ */
+#define H5_JNI_FATAL_ERROR(env, message) \
+{ \
+ h5JNIFatalError(env, message); \
+ goto done; \
+}
+
+#define H5_NULL_ARGUMENT_ERROR(env, message) \
+{ \
+ h5nullArgument(env, message); \
+ goto done; \
+}
+
+#define H5_BAD_ARGUMENT_ERROR(env, message) \
+{ \
+ h5badArgument(env, message); \
+ goto done; \
+}
+
+#define H5_OUT_OF_MEMORY_ERROR(env, message) \
+{ \
+ h5outOfMemory(env, message); \
+ goto done; \
+}
+
+#define H5_LIBRARY_ERROR(env) \
+{ \
+ h5libraryError(env); \
+ goto done; \
+}
+
+#define H5_RAISE_EXCEPTION(env, message, exception) \
+{ \
+ h5raiseException(env, message, exception); \
+ goto done; \
+}
+
+#define H5_UNIMPLEMENTED(env, message) \
+{ \
+ h5unimplemented(env, message); \
+ goto done; \
+}
+
/* implemented at H5.c */
extern jint get_enum_value(JNIEnv *env, jobject enum_obj);
extern jobject get_enum_object(JNIEnv *env, const char* enum_class_name,
diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c
index e1ec3bd..7413023 100644
--- a/java/src/jni/h5lImp.c
+++ b/java/src/jni/h5lImp.c
@@ -27,6 +27,9 @@ extern "C" {
#include "h5jni.h"
#include "h5lImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -50,19 +53,28 @@ Java_hdf_hdf5lib_H5_H5Lcopy
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcopy: src name is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcopy: dest name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcopy: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcopy: dest name not pinned");
+
+ if ((status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lcopy */
/*
@@ -75,20 +87,34 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1external
(JNIEnv *env, jclass clss, jstring file_name, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lFileName;
- const char *lCurName;
- const char *lDstName;
-
- PIN_JAVA_STRING_THREE(file_name, lFileName, cur_name, lCurName, dst_name, lDstName);
- if (lFileName != NULL && lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
-
- UNPIN_JAVA_STRING_THREE(file_name, lFileName, cur_name, lCurName, dst_name, lDstName);
-
- if (status < 0)
- h5libraryError(env);
- }
+ const char *lFileName = NULL;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == file_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: file name is NULL");
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: object name is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: link name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, file_name, lFileName, NULL, "H5Lcreate_external: file name not pinned");
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_external: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_external: link name not pinned");
+
+ if ((status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
+ if (lFileName)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, lFileName);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1external */
/*
@@ -101,19 +127,28 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1hard
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_hard: object name is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_hard: link name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_hard: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_hard: link name not pinned");
+
+ if ((status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1hard */
/*
@@ -126,19 +161,28 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1soft
(JNIEnv *env, jclass clss, jstring cur_name, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *linkTarget = NULL;
+ const char *linkName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_soft(lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_soft: link target is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_soft: link name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, cur_name, linkTarget, NULL, "H5Lcreate_soft: link target not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, linkName, NULL, "H5Lcreate_soft: link name not pinned");
+
+ if ((status = H5Lcreate_soft(linkTarget, (hid_t)dst_loc_id, linkName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, linkName);
+ if (linkTarget)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, linkTarget);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1soft */
/*
@@ -150,18 +194,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ldelete
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
+ const char *linkName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ldelete((hid_t)loc_id, lName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ldelete: link name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Ldelete: link name not pinned");
+
+ if ((status = H5Ldelete((hid_t)loc_id, linkName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
} /* end Java_hdf_hdf5lib_H5_H5Ldelete */
/*
@@ -174,19 +222,23 @@ Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
+ const char *groupName = NULL;
hsize_t n = (hsize_t)link_n;
- herr_t status;
- const char *lName;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ldelete_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ldelete_by_idx: group name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Ldelete_by_idx: group name not pinned");
+
+ if ((status = H5Ldelete_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
} /* end Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx */
/*
@@ -198,20 +250,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Lexists
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- htri_t bval = JNI_FALSE;
- const char *lName;
+ const char *linkName = NULL;
+ htri_t bval = JNI_FALSE;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- bval = H5Lexists((hid_t)loc_id, lName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lexists: link name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lexists: link name not pinned");
+
+ if ((bval = H5Lexists((hid_t)loc_id, linkName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Lexists */
@@ -225,33 +281,34 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1info
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- jobject ret_obj = NULL;
- jvalue args[5];
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lget_info((hid_t)loc_id, lName, &infobuf, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = infobuf.type;
- args[1].z = infobuf.corder_valid;
- args[2].j = infobuf.corder;
- args[3].i = infobuf.cset;
- if(infobuf.type==0)
- args[4].j = (jlong)infobuf.u.address;
- else
- args[4].j = (jlong)infobuf.u.val_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args);
- } /* end else */
- } /* end if */
+ const char *linkName = NULL;
+ jvalue args[5];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_info: link name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_info: link name not pinned");
+
+ if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = infobuf.type;
+ args[1].z = infobuf.corder_valid;
+ args[2].j = infobuf.corder;
+ args[3].i = infobuf.cset;
+ args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
+
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1info */
@@ -265,33 +322,34 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
- jobject ret_obj = NULL;
- jvalue args[5];
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = infobuf.type;
- args[1].z = infobuf.corder_valid;
- args[2].j = infobuf.corder;
- args[3].i = infobuf.cset;
- if(infobuf.type==0)
- args[4].j = (jlong)infobuf.u.address;
- else
- args[4].j = (jlong)infobuf.u.val_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args);
- } /* end els */
- }
+ const char *groupName = NULL;
+ jvalue args[5];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_info_by_idx: group name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_info_by_idx: group name not pinned");
+
+ if ((status = H5Lget_info_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = infobuf.type;
+ args[1].z = infobuf.corder_valid;
+ args[2].j = infobuf.corder;
+ args[3].i = infobuf.cset;
+ args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
+
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx */
@@ -305,43 +363,38 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
- jlong status_size;
+ const char *groupName = NULL;
jstring str = NULL;
- size_t buf_size;
- const char *lName;
- char *lValue;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link name */
- status_size = H5Lget_name_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char*)NULL, (size_t)0, H5P_DEFAULT);
- if(status_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)status_size + 1;/* add extra space for the null terminator */
-
- lValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_name_by_idx: malloc failed ");
- } /* end if */
- else {
- status_size = H5Lget_name_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char*)lValue, (size_t)buf_size, (hid_t)access_id);
-
- if (status_size < 0) {
- HDfree(lValue);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lValue);
- HDfree(lValue);
- if (str == NULL)
- h5JNIFatalError(env, "H5Lget_name_by_idx: return string not created");
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
- }
+ ssize_t status_size = -1;
+ char *linkName = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_name_by_idx: group name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_name_by_idx: group name not pinned");
+
+ /* Get the length of the link name */
+ if ((status_size = H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)NULL, (size_t)0, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* add extra space for the null terminator */
+ if (NULL == (linkName = (char *) HDmalloc(sizeof(char) * (size_t)status_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name");
+
+ if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ linkName[status_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (linkName)
+ HDfree(linkName);
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx */
@@ -355,80 +408,83 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1value
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id)
{
- size_t buf_size;
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
- char *lValue;
- const char *file_name;
- const char *obj_name;
+ const char *file_name = NULL;
+ const char *obj_name = NULL;
+ const char *linkName = NULL;
jstring str;
+ herr_t status;
+ char *linkValue = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_value: link name is NULL");
+
+ infobuf.type = H5L_TYPE_ERROR;
+
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_value: link name not pinned");
+
+ /* Get the length of the link value */
+ if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- infobuf.type = -1;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link val */
- status = H5Lget_info((hid_t)loc_id, lName, &infobuf, H5P_DEFAULT);
- if(status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = infobuf.u.val_size + 1;/* add extra space for the null terminator */
-
- if(infobuf.type == H5L_TYPE_HARD) {
- h5JNIFatalError(env, "H5Lget_val: link is hard type");
- } /* end if */
- else {
- lValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_val: malloc failed");
- } /* end if */
- else {
- status = H5Lget_val((hid_t)loc_id, lName, (void*)lValue, buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else if(infobuf.type == H5L_TYPE_EXTERNAL) {
- status = H5Lunpack_elink_val(lValue, (size_t)infobuf.u.val_size, (unsigned*)NULL, &file_name, &obj_name);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR obj_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
-
- str = ENVPTR->NewStringUTF(ENVPAR file_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 1, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lValue);
- if (str == NULL) {
- /* exception -- fatal JNI error */
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
- } /* end else */
- } /* end else */
- HDfree(lValue);
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
+ if (H5L_TYPE_HARD == infobuf.type)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported");
+
+ if (NULL == (linkValue = (char *) HDmalloc(sizeof(char) * infobuf.u.val_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value");
+
+ if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ linkValue[infobuf.u.val_size] = '\0';
+
+ switch (infobuf.type) {
+ case H5L_TYPE_SOFT:
+ {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_EXTERNAL:
+ {
+ if ((status = H5Lunpack_elink_val(linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, &file_name, &obj_name)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_ERROR:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_HARD:
+ default:
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: invalid link type");
+ break;
}
+done:
+ if (linkValue)
+ HDfree(linkValue);
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
+
return infobuf.type;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1val */
@@ -442,78 +498,86 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order,
jlong link_n, jobjectArray link_value, jlong access_id)
{
- herr_t status;
- size_t buf_size;
H5L_info_t infobuf;
- const char *lName;
- void *lValue;
- const char *file_name;
- const char *obj_name;
+ const char *file_name = NULL;
+ const char *obj_name = NULL;
+ const char *grpName = NULL;
jstring str;
+ herr_t status;
+ void *linkValue = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: group name is NULL");
+
+ infobuf.type = H5L_TYPE_ERROR;
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lget_val_by_idx: group name not pinned");
+
+ /* Get the length of the link value */
+ if ((status = H5Lget_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5L_TYPE_HARD == infobuf.type)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported")
+
+ if (!infobuf.u.val_size)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (linkValue = (void *) HDmalloc(infobuf.u.val_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value");
+
+ if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ ((char *) linkValue)[infobuf.u.val_size] = '\0';
+
+ switch (infobuf.type) {
+ case H5L_TYPE_SOFT:
+ {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, (char *)linkValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_EXTERNAL:
+ {
+ if ((status = H5Lunpack_elink_val((char *)linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, (const char **)&file_name, (const char**)&obj_name)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- infobuf.type = -1;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link valuee */
- status = H5Lget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id);
- if(status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = infobuf.u.val_size;
- if(buf_size == 0) {
- h5libraryError(env);
- } /* end if */
- else {
- lValue = (void*)HDmalloc(buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_val_by_idx: malloc failed ");
- } /* end if */
- else {
- status = H5Lget_val_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void*)lValue, (size_t)buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else if(infobuf.type == H5L_TYPE_EXTERNAL) {
- status = H5Lunpack_elink_val((char*)lValue, (size_t)infobuf.u.val_size, (unsigned*)NULL, (const char**)&file_name, (const char**)&obj_name);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR obj_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
-
- str = ENVPTR->NewStringUTF(ENVPAR file_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 1, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR (char *)lValue);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
- } /* end else */
- } /* end else */
- HDfree(lValue);
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_ERROR:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_HARD:
+ default:
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type");
+ break;
}
+done:
+ if (linkValue)
+ HDfree(linkValue);
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return infobuf.type;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1val_1by_1idx */
@@ -527,73 +591,86 @@ Java_hdf_hdf5lib_H5_H5Lmove
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lmove: src name is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lmove: dest name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lmove: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lmove: dest name not pinned");
+ if ((status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lmove */
static herr_t
H5L_iterate_cb
(hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[5];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].i = info->type;
- args[1].z = info->corder_valid;
- args[2].j = info->corder;
- args[3].i = info->cset;
- if(info->type==0)
- args[4].j = (jlong)info->u.address;
- else
- args[4].j = (jlong)info->u.val_size;
- // get a reference to your class if you don't have it already
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5L_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(IZJIJ)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return status;
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[5];
+ void *op_data = (void *)wrapper->op_data;
+ jint status = -1;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5L_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].i = info->type;
+ args[1].z = info->corder_valid;
+ args[2].j = info->corder;
+ args[3].i = info->cset;
+ args[4].j = (info->type == H5L_TYPE_HARD) ? (jlong)info->u.address : (jlong)info->u.val_size;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IZJIJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
} /* end H5L_iterate_cb */
/*
@@ -606,20 +683,23 @@ Java_hdf_hdf5lib_H5_H5Lvisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data)
{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Lvisit: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: callback_op is NULL");
+
+ if ((status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Lvisit */
@@ -633,26 +713,30 @@ Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jobject callback_op, jobject op_data, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *grpName = NULL;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Lvisit_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lvisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: callback_op is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: group name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lvisit_by_name: group name not pinned");
+
+ if ((status = H5Lvisit_by_name((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name */
@@ -667,22 +751,24 @@ Java_hdf_hdf5lib_H5_H5Literate
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: callback_op is NULL");
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if ((status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t *)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Literate */
@@ -696,27 +782,31 @@ Java_hdf_hdf5lib_H5_H5Literate_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data, jlong access_id)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- const char *lName;
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *groupName = NULL;
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
- cb_wrapper wrapper = {callback_op, op_data};
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Literate_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: callback_op is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: group name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Literate_by_name: group name not pinned");
+
+ if ((status = H5Literate_by_name((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Literate_1by_1name */
@@ -730,11 +820,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lis_1registered
(JNIEnv *env, jclass clss, jint link_cls_id)
{
- htri_t ret_val = H5Lis_registered((H5L_type_t)link_cls_id);
+ htri_t ret_val = FAIL;
+
+ UNUSED(clss);
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Lis_registered((H5L_type_t)link_cls_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (int)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Lis_1registered */
@@ -747,8 +840,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Lunregister
(JNIEnv *env, jclass clss, jint link_cls_id)
{
+ UNUSED(clss);
+
if (H5Lunregister((H5L_type_t)link_cls_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Lunregister */
diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c
index 1de505a..cc88b81 100644
--- a/java/src/jni/h5oImp.c
+++ b/java/src/jni/h5oImp.c
@@ -26,6 +26,9 @@ extern "C" {
#include "h5jni.h"
#include "h5oImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -48,18 +51,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Oopen
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
- hid_t status = -1;
- const char *oName;
+ const char *objName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- status = H5Oopen((hid_t)loc_id, oName, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oopen: object name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oopen: object name not pinned");
+
+ if ((status = H5Oopen((hid_t)loc_id, objName, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen */
@@ -73,11 +80,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Oclose
(JNIEnv *env, jclass clss, jlong object_id)
{
- herr_t retVal = H5Oclose((hid_t)object_id);
+ herr_t retVal = FAIL;
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Oclose((hid_t)object_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oclose */
@@ -91,19 +101,28 @@ Java_hdf_hdf5lib_H5_H5Ocopy
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ if (NULL == cur_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ocopy: src name is NULL");
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ocopy: dst name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Ocopy: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Ocopy: dest name not pinned");
+
+ if ((status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Ocopy */
/*
@@ -115,57 +134,61 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1info
(JNIEnv *env, jclass clss, jlong loc_id, jint fields)
{
- herr_t status = -1;
- H5O_info_t infobuf;
- jvalue args[12];
- jobject hdrinfobuf;
- jobject ihinfobuf1;
- jobject ihinfobuf2;
- jobject ret_obj = NULL;
-
- status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
-
+ H5O_info_t infobuf;
+ jobject hdrinfobuf;
+ jobject ihinfobuf1;
+ jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ if ((status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */
@@ -178,62 +201,69 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id)
{
- const char *lName;
- herr_t status = -1;
H5O_info_t infobuf;
- jvalue args[12];
+ const char *objName = NULL;
jobject hdrinfobuf;
jobject ihinfobuf1;
jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
jobject ret_obj = NULL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Oget_info_by_name2((hid_t)loc_id, lName, &infobuf, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
- }
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_name: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned");
+
+ if ((status = H5Oget_info_by_name2((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */
@@ -248,62 +278,69 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id,
jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id)
{
- const char *lName;
- herr_t status;
H5O_info_t infobuf;
- jvalue args[12];
+ const char *grpName = NULL;
jobject hdrinfobuf;
jobject ihinfobuf1;
jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
jobject ret_obj = NULL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Oget_info_by_idx2((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
- }
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_idx: group name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned");
+
+ if ((status = H5Oget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */
@@ -318,130 +355,138 @@ Java_hdf_hdf5lib_H5_H5Olink
(JNIEnv *env, jclass clss, jlong cur_loc_id, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lDstName;
+ const char *linkDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(dst_name, lDstName);
- if (lDstName != NULL) {
- status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(dst_name, lDstName);
+ if (NULL == dst_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Olink: link destination name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, dst_name, linkDstName, NULL, "H5Olink: link destination name not pinned");
+
+ if ((status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, linkDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, linkDstName);
} /* end Java_hdf_hdf5lib_H5_H5Olink */
static herr_t
H5O_iterate_cb
(hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[12];
- jobject hdrinfobuf;
- jobject ihinfobuf1;
- jobject ihinfobuf2;
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jobject hdrinfobuf;
+ jobject ihinfobuf1;
+ jobject ihinfobuf2;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[12];
+ void *op_data = (void *)wrapper->op_data;
+ jint status = FAIL;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5O_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].i = (jint)info->hdr.version;
+ args[1].i = (jint)info->hdr.nmesgs;
+ args[2].i = (jint)info->hdr.nchunks;
+ args[3].i = (jint)info->hdr.flags;
+ args[4].j = (jlong)info->hdr.space.total;
+ args[5].j = (jlong)info->hdr.space.meta;
+ args[6].j = (jlong)info->hdr.space.mesg;
+ args[7].j = (jlong)info->hdr.space.free;
+ args[8].j = (jlong)info->hdr.mesg.present;
+ args[9].j = (jlong)info->hdr.mesg.shared;
+
+ /* Get a reference to the H5_hdr_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IIIIJJJJJJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (hdrinfobuf = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- /* printf("JNI H5O_iterate_cb error: AttachCurrentThread failed\n"); */
+ args[0].j = (jlong)info->meta_size.obj.index_size;
+ args[1].j = (jlong)info->meta_size.obj.heap_size;
+
+ /* Get a reference to the H5_ih_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (ihinfobuf1 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ args[0].j = (jlong)info->meta_size.attr.index_size;
+ args[1].j = (jlong)info->meta_size.attr.heap_size;
+
+ if (NULL == (ihinfobuf2 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ args[0].j = (jlong)info->fileno;
+ args[1].j = (jlong)info->addr;
+ args[2].i = info->type;
+ args[3].i = (jint)info->rc;
+ args[4].j = (jlong)info->num_attrs;
+ args[5].j = info->atime;
+ args[6].j = info->mtime;
+ args[7].j = info->ctime;
+ args[8].j = info->btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ /* Get a reference to the H5O_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].i = (jint)info->hdr.version;
- args[1].i = (jint)info->hdr.nmesgs;
- args[2].i = (jint)info->hdr.nchunks;
- args[3].i = (jint)info->hdr.flags;
- args[4].j = (jlong)info->hdr.space.total;
- args[5].j = (jlong)info->hdr.space.meta;
- args[6].j = (jlong)info->hdr.space.mesg;
- args[7].j = (jlong)info->hdr.space.free;
- args[8].j = (jlong)info->hdr.mesg.present;
- args[9].j = (jlong)info->hdr.mesg.shared;
- // get a reference to the H5_hdr_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5O_hdr_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(IIIIJJJJJJ)V");
- if (constructor != 0) {
- hdrinfobuf = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (hdrinfobuf == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->meta_size.obj.index_size;
- args[1].j = (jlong)info->meta_size.obj.heap_size;
- // get a reference to the H5_ih_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5_ih_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJ)V");
- if (constructor != 0) {
- ihinfobuf1 = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (ihinfobuf1 == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->meta_size.attr.index_size;
- args[1].j = (jlong)info->meta_size.attr.heap_size;
- ihinfobuf2 = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (ihinfobuf2 == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->fileno;
- args[1].j = (jlong)info->addr;
- args[2].i = info->type;
- args[3].i = (jint)info->rc;
- args[4].j = (jlong)info->num_attrs;
- args[5].j = info->atime;
- args[6].j = info->mtime;
- args[7].j = info->ctime;
- args[8].j = info->btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- // get a reference to the H5O_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5O_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- }
- }
- }
- }
- }
- }
- }
- }
- }
- }
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return status;
+ return (herr_t)status;
} /* end H5O_iterate_cb */
/*
@@ -454,24 +499,23 @@ Java_hdf_hdf5lib_H5_H5Ovisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data, jint fields)
{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Ovisit: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Ovisit: callback_op is NULL");
- } /* end if */
- else {
- status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)&wrapper, (unsigned)fields);
-
- if (status < 0)
- h5libraryError(env);
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: callback_op is NULL");
+
+ if ((status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit */
@@ -485,31 +529,30 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jobject callback_op, jobject op_data, jint fields, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Ovisit_by_name: op_data is NULL");
- return -1;
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Ovisit_by_name: callback_op is NULL");
- return -1;
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ovisit_by_name2((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)&wrapper, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0)
- h5libraryError(env);
- }
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *objName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit_by_name: callback_op is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit_by_name: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Ovisit_by_name: object name not pinned");
+
+ if ((status = H5Ovisit_by_name2((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name */
@@ -523,24 +566,20 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oset_1comment
(JNIEnv *env, jclass clss, jlong loc_id, jstring comment)
{
- herr_t status = -1;
const char *oComment = NULL;
- jboolean isCopy;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
- if (comment == NULL) {
- status = H5Oset_comment((hid_t)loc_id, oComment);
- } /* end if */
- else {
- oComment = ENVPTR->GetStringUTFChars(ENVPAR comment, &isCopy);
- if (oComment != NULL) {
- status = H5Oset_comment((hid_t)loc_id, oComment);
+ if (NULL != comment)
+ PIN_JAVA_STRING(ENVONLY, comment, oComment, NULL, "H5Oset_comment: object comment not pinned");
- ENVPTR->ReleaseStringUTFChars(ENVPAR comment, oComment);
- }
- } /* end else */
+ if ((status = H5Oset_comment((hid_t)loc_id, oComment)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
+done:
+ if (oComment)
+ UNPIN_JAVA_STRING(ENVONLY, comment, oComment);
} /* end Java_hdf_hdf5lib_H5_H5Oset_1comment */
/*
@@ -553,29 +592,29 @@ Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id,
jstring name, jstring comment, jlong access_id)
{
- herr_t status = -1;
- const char *oName;
- const char *oComment;
-
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- if (comment == NULL) {
- status = H5Oset_comment_by_name((hid_t)loc_id, oName, NULL, (hid_t)access_id);
- } /* end if */
- else {
- jboolean isCopy;
- oComment = ENVPTR->GetStringUTFChars(ENVPAR comment, &isCopy);
- if (oComment != NULL) {
- status = H5Oset_comment_by_name((hid_t)loc_id, oName, oComment, (hid_t)access_id);
- ENVPTR->ReleaseStringUTFChars(ENVPAR comment, oComment);
- } /* end if */
- } /* end else */
-
- UNPIN_JAVA_STRING(name, oName);
-
- if (status < 0)
- h5libraryError(env);
- }
+ const char *objName = NULL;
+ const char *objComment = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oset_comment_by_name: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oset_comment_by_name: object name not pinned");
+
+ if (NULL != comment)
+ PIN_JAVA_STRING(ENVONLY, comment, objComment, &isCopy, "H5Oset_comment_by_name: object comment not pinned");
+
+ if ((status = H5Oset_comment_by_name((hid_t)loc_id, objName, objComment, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objComment)
+ UNPIN_JAVA_STRING(ENVONLY, comment, objComment);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
} /* end Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name */
/*
@@ -587,39 +626,32 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1comment
(JNIEnv *env, jclass clss, jlong loc_id)
{
- char *oComment;
- ssize_t buf_size;
- ssize_t status;
jstring str = NULL;
+ ssize_t buf_size;
+ ssize_t status = -1;
+ char *oComment = NULL;
+
+ UNUSED(clss);
+
+ /* Get the length of the comment */
+ if ((buf_size = H5Oget_comment((hid_t)loc_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size) {
+ if (NULL == (oComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer");
- /* get the length of the comment */
- buf_size = H5Oget_comment((hid_t)loc_id, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Oget_comment: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (oComment == NULL) {
- /* exception -- out of memory */
- h5outOfMemory( env, "H5Oget_comment: malloc failed");
- } /* end if */
- else {
- status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR oComment);
- if (str == NULL) {
- h5JNIFatalError( env, "H5Oget_comment: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(oComment);
- }
- } /* end else if */
+ if ((status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ oComment[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oComment)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (oComment)
+ HDfree(oComment);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1comment */
@@ -633,44 +665,41 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- char *oComment;
- const char *oName;
+ const char *objName = NULL;
+ jstring str = NULL;
ssize_t buf_size;
ssize_t status;
- jstring str = NULL;
+ char *objComment = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_comment_by_name: object name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_comment_by_name: object name not pinned");
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- /* get the length of the comment */
- buf_size = H5Oget_comment_by_name((hid_t)loc_id, oName, NULL, 0, (hid_t)access_id);
- if (buf_size < 0) {
- h5badArgument( env, "H5Oget_comment_by_name: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (oComment == NULL) {
- h5outOfMemory( env, "H5Oget_comment_by_name: malloc failed");
- } /* end if */
- else {
- status = H5Oget_comment_by_name((hid_t)loc_id, oName, oComment, (size_t)buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR oComment);
- if (str == NULL) {
- h5JNIFatalError( env, "H5Oget_comment_by_name: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(oComment);
- }
- } /* end if */
- UNPIN_JAVA_STRING(name, oName);
+ /* Get the length of the comment */
+ if ((buf_size = H5Oget_comment_by_name((hid_t)loc_id, objName, NULL, 0, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size) {
+ if (NULL == (objComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment_by_name: failed to allocate buffer for object comment");
+
+ if ((status = H5Oget_comment_by_name((hid_t)loc_id, objName, objComment, (size_t)buf_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ objComment[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, objComment)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
+done:
+ if (objComment)
+ HDfree(objComment);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
+
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name */
@@ -683,20 +712,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Oexists_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
+ const char *objName = NULL;
htri_t bval = JNI_FALSE;
- const char *oName;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- bval = H5Oexists_by_name((hid_t)loc_id, oName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oexists_by_name: object name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oexists_by_name: object name not pinned");
+
+ if ((bval = H5Oexists_by_name((hid_t)loc_id, objName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Oexists_1by_1name */
@@ -710,8 +743,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Odecr_1refcount
(JNIEnv *env, jclass clss, jlong object_id)
{
+ UNUSED(clss);
+
if (H5Odecr_refcount((hid_t)object_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/* end Java_hdf_hdf5lib_H5_H5Odecr_1refcount */
/*
@@ -723,8 +761,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oincr_1refcount
(JNIEnv *env, jclass clss, jlong object_id)
{
+ UNUSED(clss);
+
if (H5Oincr_refcount((hid_t)object_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Oincr_1refcount */
/*
@@ -736,12 +779,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr
(JNIEnv *env, jclass clss, jlong loc_id, jlong addr)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr );
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr */
@@ -755,18 +800,22 @@ Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *oName;
+ const char *grpName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- retVal = H5Oopen_by_idx((hid_t)loc_id, oName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (hid_t)lapl_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oopen_by_idx: object name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oopen_by_idx: object name not pinned");
+
+ if ((retVal = H5Oopen_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx */
@@ -780,8 +829,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Oflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Oflush */
/*
@@ -793,8 +847,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Orefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Orefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Orefresh */
diff --git a/java/src/jni/h5pACPLImp.c b/java/src/jni/h5pACPLImp.c
new file mode 100644
index 0000000..f6c14e1
--- /dev/null
+++ b/java/src/jni/h5pACPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pACPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pACPLImp.h b/java/src/jni/h5pACPLImp.h
new file mode 100644
index 0000000..194afc0
--- /dev/null
+++ b/java/src/jni/h5pACPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PACPL
+#define _Included_hdf_hdf5lib_H5_H5PACPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */
diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c
new file mode 100644
index 0000000..fb39b84
--- /dev/null
+++ b/java/src/jni/h5pDAPLImp.c
@@ -0,0 +1,325 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+extern JavaVM *jvm;
+
+typedef struct _cb_wrapper {
+ jobject visit_callback;
+ jobject op_data;
+} cb_wrapper;
+
+static herr_t H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *cb_data);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_cache
+ * Signature: (JJJD)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
+ (JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots,
+ jlong rdcc_nbytes, jdouble rdcc_w0)
+{
+ UNUSED(clss);
+
+ if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_cache
+ * Signature: (J[J[J[D)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
+ (JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots,
+ jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
+{
+ jboolean isCopy;
+ jdouble *w0Array = NULL;
+ jlong *rdcc_nslotsArray = NULL;
+ jlong *nbytesArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL != rdcc_w0)
+ PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_chunk_cache: rdcc_w0 array not pinned");
+ if (NULL != rdcc_nslots)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, &isCopy, "H5Pget_chunk_cache: rdcc_nslots array not pinned");
+ if (NULL != rdcc_nbytes)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_chunk_cache: nbytesArray array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long rdcc_nslots_temp = *rdcc_nslotsArray;
+ long long nbytes_temp = *nbytesArray;
+ size_t rdcc_nslots_t = (size_t) rdcc_nslots_temp;
+ size_t nbytes_t = (size_t) nbytes_temp;
+
+ if ((status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *rdcc_nslotsArray = (jlong)rdcc_nslots_t;
+ *nbytesArray = (jlong)nbytes_t;
+ } /* end direct cast special handling */
+
+done:
+ if (nbytesArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, (status < 0) ? JNI_ABORT : 0);
+ if (rdcc_nslotsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, (status < 0) ? JNI_ABORT : 0);
+ if (w0Array)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, (status < 0) ? JNI_ABORT : 0);
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_efile_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+ const char *extFilePrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == prefix)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_efile_prefix: external file prefix is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix, NULL, "H5Pset_efile_prefix: external file prefix not pinned");
+
+ if ((retVal = H5Pset_efile_prefix((hid_t)dapl_id, extFilePrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (extFilePrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_efile_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ ssize_t prefix_size = -1;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if ((prefix_size = H5Pget_efile_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed");
+
+ if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[(size_t)prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
+ (JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data)
+{
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: callback_op is NULL");
+
+ if ((status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t *)boundary, (H5D_append_cb_t)H5D_append_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
+
+/*
+ * TODO: H5Pget_append_flush
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_view
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
+ (JNIEnv *env, jclass clss, jlong dapl_id, jint view)
+{
+ UNUSED(clss);
+
+ if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_view
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ H5D_vds_view_t virtual_view = H5D_VDS_ERROR;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)virtual_view;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_printf_gap
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
+ (JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_printf_gap
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ hsize_t gap_size = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)gap_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */
+
+static herr_t
+H5D_append_cb
+ (hid_t dataset_id, hsize_t *cur_dims, void *cb_data)
+{
+ cb_wrapper *wrapper = (cb_wrapper *)cb_data;
+ jlongArray cur_dimsArray;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ void *op_data = (void *)wrapper->op_data;
+ jint status = -1;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5D_append_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL != cur_dims) {
+ if (NULL == (cur_dimsArray = CBENVPTR->NewLongArray(CBENVONLY, 2)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ CBENVPTR->SetLongArrayRegion(CBENVONLY, cur_dimsArray, 0, 2, (const jlong *)cur_dims);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, dataset_id, cur_dims, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (CBENVONLY)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
+} /* end H5D_append_cb */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDAPLImp.h b/java/src/jni/h5pDAPLImp.h
new file mode 100644
index 0000000..a9fbadd
--- /dev/null
+++ b/java/src/jni/h5pDAPLImp.h
@@ -0,0 +1,112 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL
+#define _Included_hdf_hdf5lib_H5_H5PDAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_cache
+ * Signature: (JJJD)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
+(JNIEnv *, jclass, jlong, jlong, jlong, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_cache
+ * Signature: (J[J[J[D)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
+(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_efile_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_efile_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
+ (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
+
+/*
+ * TODO: H5Pget_append_flush
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_view
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_view
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_printf_gap
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_printf_gap
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */
diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c
new file mode 100644
index 0000000..7559c3b
--- /dev/null
+++ b/java/src/jni/h5pDCPLImp.c
@@ -0,0 +1,1415 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_layout
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1layout
+ (JNIEnv *env, jclass clss, jlong plist, jint layout)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_layout((hid_t)plist, (H5D_layout_t)layout)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1layout */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_layout
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1layout
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5D_layout_t retVal = H5D_LAYOUT_ERROR;
+
+ UNUSED(clss);
+
+ if (H5D_LAYOUT_ERROR == (retVal = H5Pget_layout((hid_t)plist)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1layout */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk
+ * Signature: (JI[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk
+ (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim)
+{
+ jboolean isCopy;
+ hsize_t *da = NULL;
+ hsize_t *lp = NULL;
+ size_t i;
+ size_t rank;
+ jsize arrLen;
+ jbyte *theArray = NULL;
+ jlong *jlp = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (ndims < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: ndims < 0");
+ if (NULL == dim)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dim)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array length < 0");
+ }
+
+ rank = (size_t) arrLen / sizeof(jlong);
+ if (rank < (size_t) ndims)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dims array rank < ndims");
+
+ PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned");
+
+ if (NULL == (da = lp = (hsize_t *) HDmalloc(rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed");
+
+ jlp = (jlong *)theArray;
+ for (i = 0; i < rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end if */
+
+ if ((status = H5Pset_chunk((hid_t)plist, (int)ndims, da)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (da)
+ HDfree(da);
+ if (theArray)
+ UNPIN_BYTE_ARRAY(ENVONLY, dim, theArray, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk
+ * Signature: (JI[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk
+ (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims)
+{
+ jboolean isCopy;
+ hsize_t *da = NULL;
+ jlong *theArray = NULL;
+ jsize arrLen;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims array length < 0");
+ }
+ if (arrLen < max_ndims)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims array < max_ndims");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned");
+
+ if (NULL == (da = (hsize_t *) HDmalloc((size_t)max_ndims * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed");
+
+ if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < max_ndims; i++)
+ theArray[i] = (jlong)da[i];
+
+done:
+ if (da)
+ HDfree(da);
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_opts
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_chunk_opts((hid_t)dcpl_id, (unsigned)opts)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_opts
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ unsigned opts = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_chunk_opts((hid_t)dcpl_id, &opts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)opts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_dset_no_attrs_hint
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
+(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize)
+{
+ hbool_t minimize_val;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ minimize_val = (JNI_TRUE == minimize) ? TRUE : FALSE;
+
+ if ((retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t)minimize_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_dset_no_attrs_hint
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
+(JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ hbool_t minimize = FALSE;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t *)&minimize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (minimize == TRUE)
+ bval = JNI_TRUE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_deflate
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1deflate
+ (JNIEnv *env, jclass clss, jlong plist, jint level)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_deflate((hid_t)plist, (unsigned)level)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1deflate */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
+{
+ jboolean isCopy;
+ jbyte *byteP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value) {
+ if ((status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else {
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Pget_fill_value: value array not pinned");
+
+ if ((status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1value */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
+{
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *byteP = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fill_value: value is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Pget_fill_value: value array not pinned");
+
+ if ((status = H5Pget_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1value */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pfill_value_defined
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
+ (JNIEnv *env, jclass clss, jlong plist, jintArray status)
+{
+ H5D_fill_value_t value = H5D_FILL_VALUE_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == status)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pfill_value_defined: status is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, status, theArray, &isCopy, "H5Pfill_value_defined: status not pinned");
+
+ if ((retVal = H5Pfill_value_defined((hid_t)plist, &value)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jint)value;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, status, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
+ (JNIEnv *env, jclass clss, jlong plist, jint fill_time)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fill_time((hid_t)plist, (H5D_fill_time_t)fill_time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
+ (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time)
+{
+ H5D_fill_time_t time = H5D_FILL_TIME_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fill_time)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fill_time: fill_time is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, fill_time, theArray, &isCopy, "H5Pget_fill_time: fill_time not pinned");
+
+ if ((retVal = H5Pget_fill_time((hid_t)plist, &time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jint)time;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, fill_time, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alloc_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
+ (JNIEnv *env, jclass clss, jlong plist, jint alloc_time)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_alloc_time((hid_t)plist, (H5D_alloc_time_t)alloc_time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alloc_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
+ (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time)
+{
+ H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == alloc_time)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_alloc_time: alloc_time is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, alloc_time, theArray, &isCopy, "H5Pget_alloc_time: alloc_time not pinned");
+
+ if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = time;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, alloc_time, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags,
+ jlong cd_nelmts, jintArray cd_values)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == cd_values) {
+ if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int)flags, (size_t)cd_nelmts, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else {
+ PIN_INT_ARRAY(ENVONLY, cd_values, theArray, &isCopy, "H5Pset_filter: input array not pinned");
+
+ if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, theArray, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pall_filters_avail
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ htri_t bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if ((bval = H5Pall_filters_avail((hid_t)dcpl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return (jboolean)bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nfilters
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nfilters
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_nfilters((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1nfilters */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags,
+ jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
+{
+ jboolean isCopy;
+ jstring str;
+ jint *flagsArray = NULL;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ char *filter = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (namelen <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: namelen <= 0");
+ if (NULL == flags)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL");
+
+ if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter: nelmts array not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter: elmts array not pinned");
+
+
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ {
+ unsigned int filter_config;
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, filter, &filter_config)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ }
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0)
+ if (filter)
+ HDfree(filter);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter2
+ (JNIEnv *env, jclass clss, jlong plist, jint filter_number,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen,
+ jobjectArray name, jintArray filter_config)
+{
+ jboolean isCopy;
+ jstring str;
+ jint *flagsArray = NULL;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *filter_configArray = NULL;
+ char *filter = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (namelen <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: namelen <= 0");
+ if (NULL == flags)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: cd_nelmts is NULL");
+ if (NULL == filter_config)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL");
+
+ if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter2: nelmts array not pinned");
+ PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter2: filter_config array not pinned");
+
+ if (NULL == cd_values && *cd_nelmtsArray == 0) {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = 0;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, NULL,
+ (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ }
+ else {
+ if (NULL == cd_values)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: cd_values is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter2: elmts array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special */
+ }
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (filter_configArray)
+ UNPIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (filter)
+ HDfree(filter);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
+{
+ jboolean isCopy;
+ jstring str;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *flagsArray = NULL;
+ char *aName = NULL;
+ long bs;
+ int rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ bs = (long)namelen;
+
+ if (bs <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: namelen <= 0");
+ if (NULL == flags)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_values is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id: cd_nelms not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id: cd_values array not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, cd_values)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_values array length < 0");
+ }
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ unsigned int filter_config;
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, (char *)aName, &filter_config)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ aName[bs - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special */
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (aName)
+ HDfree(aName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config)
+{
+ jboolean isCopy;
+ jstring str;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *flagsArray = NULL;
+ jint *filter_configArray = NULL;
+ long bs;
+ char *aName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ bs = (long)namelen;
+
+ if (bs <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: namelen <= 0");
+ if (NULL == flags)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: cd_values is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: name is NULL");
+ if (NULL == filter_config)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id2: cd_nelms not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id2: cd_values array not pinned");
+ PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter_by_id2: filter_config not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ aName[bs - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special handling */
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (filter_configArray)
+ UNPIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (aName)
+ HDfree(aName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pmodify_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pmodify_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jint flags, jlong cd_nelmts, jintArray cd_values)
+{
+ jboolean isCopy;
+ jint *cd_valuesP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pmodify_filter: cd_values is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, &isCopy, "H5Pmodify_filter: cd_values not pinned");
+
+ if ((status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter, (const unsigned int)flags,
+ (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cd_valuesP)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pmodify_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Premove_filter
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5P1remove_1filter
+ (JNIEnv *env, jclass clss, jlong obj_id, jint filter)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Premove_filter((hid_t)obj_id, (H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5P1remove_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fletcher32
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fletcher32((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nbit
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nbit
+ (JNIEnv *env, jclass clss, jlong plist_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_nbit((hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1nbit */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_scaleoffset
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
+ (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (scale_factor < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_scaleoffset: scale factor must be >= 0");
+ if (scale_type != H5Z_SO_FLOAT_DSCALE && scale_type != H5Z_SO_FLOAT_ESCALE && scale_type != H5Z_SO_INT)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_scaleoffset: invalid scale type");
+
+ if ((retVal = H5Pset_scaleoffset((hid_t)plist_id, (H5Z_SO_scale_type_t)scale_type, scale_factor)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shuffle
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shuffle
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_shuffle((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shuffle */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_szip
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1szip
+ (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_szip((hid_t)plist, (unsigned int)options_mask, (unsigned int)pixels_per_block)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1szip */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_external
+ * Signature: (JLjava/lang/String;JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1external
+ (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size)
+{
+ const char *fileName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_external: file name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Pset_external: file name not pinned");
+
+ if ((status = H5Pset_external((hid_t)plist, fileName, (off_t)offset, (hsize_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1external */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external
+ * Signature: (JIJ[Ljava/lang/String;[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external
+ (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size,
+ jobjectArray name, jlongArray size)
+{
+ jboolean isCopy;
+ jstring str;
+ hsize_t s;
+ off_t o;
+ jsize arrLen;
+ jlong *theArray = NULL;
+ char *file = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (name_size < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: name_size < 0");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size array length < 0");
+ }
+ if ((size != NULL) && (arrLen < 2))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size input array < 2");
+
+ if (name_size > 0)
+ if (NULL == (file = (char *) HDmalloc(sizeof(char) * (size_t)name_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: memory allocation failed");
+
+ if ((status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size,
+ file, (off_t *)&o, (hsize_t *)&s)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL != size) {
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_external: size array not pinned");
+
+ theArray[0] = o;
+ theArray[1] = (jlong)s;
+ }
+
+ if (NULL != file) {
+ file[name_size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+ if (file)
+ HDfree(file);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external_count
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external_1count
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_external_count((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1external_1count */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual
+ * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id,
+ jstring src_file_name, jstring src_dset_name, jlong src_space_id)
+{
+ const char *fstr = NULL;
+ const char *dstr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == src_file_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_virtual: src_file_name is NULL");
+ if (NULL == src_dset_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_virtual: src_dset_name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, src_file_name, fstr, NULL, "H5Pset_virtual: src_file_name not pinned");
+ PIN_JAVA_STRING(ENVONLY, src_dset_name, dstr, NULL, "H5Pset_virtual: src_dset_name not pinned");
+
+ if ((retVal = H5Pset_virtual((hid_t)dcpl_id, (hid_t)vspace_id, fstr, dstr, (hid_t)src_space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dstr)
+ UNPIN_JAVA_STRING(ENVONLY, src_dset_name, dstr);
+ if (fstr)
+ UNPIN_JAVA_STRING(ENVONLY, src_file_name, fstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_count
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ size_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_count((hid_t)dcpl_id, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_dsetname
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ ssize_t buf_size;
+ char *dname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ /* get the length of the filename */
+ if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (dname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed");
+
+ if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ dname[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, dname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (dname)
+ HDfree(dname);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_filename
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ ssize_t buf_size;
+ char *fname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ /* get the length of the filename */
+ if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (fname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed");
+
+ if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ fname[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, fname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (fname)
+ HDfree(fname);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_srcspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ hid_t space_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)space_id;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_vspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ hid_t space_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)space_id;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+ const char *virtPrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == prefix)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_virtual_prefix: virtual prefix is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, prefix, virtPrefix, NULL, "H5Pset_virtual_prefix: virtual prefix not pinned");
+
+ if ((retVal = H5Pset_virtual_prefix((hid_t)dapl_id, virtPrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (virtPrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, virtPrefix);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ ssize_t prefix_size = -1;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if ((prefix_size = H5Pget_virtual_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed");
+
+ if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t) prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDCPLImp.h b/java/src/jni/h5pDCPLImp.h
new file mode 100644
index 0000000..6e5c225
--- /dev/null
+++ b/java/src/jni/h5pDCPLImp.h
@@ -0,0 +1,396 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL
+#define _Included_hdf_hdf5lib_H5_H5PDCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_layout
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1layout
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_layout
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1layout
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk
+ * Signature: (JI[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk
+(JNIEnv *, jclass, jlong, jint, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk
+ * Signature: (JI[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk
+(JNIEnv *, jclass, jlong, jint, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_opts
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_opts
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_dset_no_attrs_hint
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
+ (JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_dset_no_attrs_hint
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_deflate
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1deflate
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
+(JNIEnv *, jclass, jlong, jlong, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
+(JNIEnv *, jclass, jlong, jlong, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pfill_value_defined
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alloc_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alloc_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1filter
+(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pall_filters_avail
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nfilters
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nfilters
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter2
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pmodify_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pmodify_1filter
+(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Premove_filter
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5P1remove_1filter
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fletcher32
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nbit
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nbit
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_scaleoffset
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shuffle
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shuffle
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_szip
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1szip
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_external
+ * Signature: (JLjava/lang/String;JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1external
+(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external
+ * Signature: (JIJ[Ljava/lang/String;[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external
+(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external_count
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external_1count
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual
+ * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual
+(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_count
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_dsetname
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_filename
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_srcspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_vspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */
diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c
new file mode 100644
index 0000000..323fa8c
--- /dev/null
+++ b/java/src/jni/h5pDXPLImp.c
@@ -0,0 +1,505 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDXPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer
+ * Signature: (JJ[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer
+ (JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg)
+{
+#ifdef notdef
+ jboolean isCopy;
+ jbyte *tconvP = NULL;
+ jbyte *bkgP = NULL;
+#endif
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+#ifndef notdef
+ UNUSED(plist);
+ UNUSED(size);
+ UNUSED(tconv);
+ UNUSED(bkg);
+#endif
+
+ H5_UNIMPLEMENTED(ENVONLY, "H5Pset_buffer: not implemented");
+
+ /* NOTE: DON'T IMPLEMENT THIS!!! */
+#ifdef notdef
+ if (NULL != tconv)
+ PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pset_buffer: tconv not pinned");
+ if (NULL != bkg)
+ PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pset_buffer: bkg not pinned");
+
+ if ((status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+#endif
+
+done:
+#ifdef notdef
+ if (bkgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
+ if (tconvP)
+ UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
+#endif
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer
+ * Signature: (J[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer
+ (JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg)
+{
+#ifdef notdef
+ jboolean isCopy;
+ jbyte *tconvP = NULL;
+ jbyte *bkgP = NULL;
+#endif
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+#ifndef notdef
+ UNUSED(plist);
+ UNUSED(tconv);
+ UNUSED(bkg);
+#endif
+
+ H5_UNIMPLEMENTED(ENVONLY, "H5Pget_buffer: not implemented");
+
+ /* NOTE: DON'T IMPLEMENT THIS!!! */
+#ifdef notdef
+ if (NULL == tconv)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: tconv input array is NULL");
+ if (NULL == bkg)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: bkg array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pget_buffer: tconv not pinned");
+ PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pget_buffer: bkg not pinned");
+
+ if ((status = H5Pget_buffer((hid_t)plist, tconvP, bkgP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+#endif
+
+done:
+#ifdef notdef
+ if (bkgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
+ if (tconvP)
+ UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
+#endif
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ size_t size = 0;
+
+ UNUSED(clss);
+
+ if (!(size = H5Pget_buffer((hid_t)plist, NULL, NULL)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_preserve
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1preserve
+ (JNIEnv *env, jclass clss, jlong plist, jboolean status)
+{
+ hbool_t st = JNI_FALSE;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (JNI_TRUE == status)
+ st = TRUE;
+ else if (JNI_FALSE == status)
+ st = false;
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_preserve: status not TRUE or FALSE");
+
+ if ((retVal = H5Pset_preserve((hid_t)plist, st)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_preserve
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1preserve
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_preserve((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_edc_check
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
+ (JNIEnv *env, jclass clss, jlong plist, jint check)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_edc_check
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5Z_EDC_t retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_edc_check((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */
+
+/*
+ * TODO: H5Pset_filter_callback
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_data_transform
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
+ (JNIEnv *env, jclass clss, jlong plist_id, jstring expression)
+{
+ const char *express = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == expression)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_data_transform: data transform expression is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, expression, express, NULL, "H5Pset_data_transform: data transform expression not pinned");
+
+ if ((retVal = H5Pset_data_transform((hid_t)plist_id, express)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (express)
+ UNPIN_JAVA_STRING(ENVONLY, expression, express);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_data_transform
+ * Signature: (J[Ljava/lang/String;J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
+ (JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size)
+{
+ jstring str = NULL;
+ char *express = NULL;
+ ssize_t express_size = -1;
+
+ UNUSED(clss);
+
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_data_transform: size <= 0");
+
+ if ((express_size = H5Pget_data_transform((hid_t)plist_id, (char *)NULL, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (express = (char *) HDmalloc(sizeof(char) * (size_t)express_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed");
+
+ if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ express[express_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, express))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, expression, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (express)
+ HDfree(express);
+
+ return (jlong)express_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
+
+/*
+ * TODO: H5Pset_type_conv_cb
+ */
+
+/*
+ * TODO: H5Pget_type_conv_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_hyper_vector_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong vector_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_hyper_vector_size
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size)
+{
+ jboolean isCopy;
+ size_t size;
+ jlong *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == vector_size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_hyper_vector_size: vector_size is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, vector_size, theArray, &isCopy, "H5Pget_hyper_vector_size: vector_size not pinned");
+
+ if ((retVal = H5Pget_hyper_vector_size((hid_t)plist, &size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)size;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, vector_size, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_btree_ratios
+ * Signature: (JDDD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
+ (JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_btree_ratios
+ * Signature: (J[D[D[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
+ (JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left,
+ jdoubleArray middle, jdoubleArray right)
+{
+ jboolean isCopy;
+ jdouble *leftP = NULL;
+ jdouble *middleP = NULL;
+ jdouble *rightP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == left)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: left input array is NULL");
+ if (NULL == middle)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: middle input array is NULL");
+ if (NULL == right)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: right input array is NULL");
+
+ PIN_DOUBLE_ARRAY(ENVONLY, left, leftP, &isCopy, "H5Pget_btree_ratios: left array not pinned");
+ PIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, &isCopy, "H5Pget_btree_ratios: middle array not pinned");
+ PIN_DOUBLE_ARRAY(ENVONLY, right, rightP, &isCopy, "H5Pget_btree_ratios: right array not pinned");
+
+ if ((status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP,
+ (double *)middleP, (double *)rightP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (rightP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, right, rightP, (status < 0) ? JNI_ABORT : 0);
+ if (middleP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, (status < 0) ? JNI_ABORT : 0);
+ if (leftP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, left, leftP, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */
+
+/*
+ * TODO: H5Pset_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pget_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pget_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_num
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_collective_opt
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_chunk_opt_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_io_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_no_collective_cause
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDXPLImp.h b/java/src/jni/h5pDXPLImp.h
new file mode 100644
index 0000000..d62f9c5
--- /dev/null
+++ b/java/src/jni/h5pDXPLImp.h
@@ -0,0 +1,209 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL
+#define _Included_hdf_hdf5lib_H5_H5PDXPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer
+ * Signature: (JJ[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer
+(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer
+ * Signature: (J[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer
+(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_preserve
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1preserve
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_preserve
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1preserve
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_edc_check
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_edc_check
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_filter_callback
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_data_transform
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_data_transform
+ * Signature: (J[Ljava/lang/String;J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
+(JNIEnv *, jclass, jlong, jobjectArray, jlong);
+
+/*
+ * TODO: H5Pset_type_conv_cb
+ */
+
+/*
+ * TODO: H5Pget_type_conv_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_hyper_vector_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_hyper_vector_size
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_btree_ratios
+ * Signature: (JDDD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
+(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_btree_ratios
+ * Signature: (J[D[D[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
+(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray);
+
+/*
+ * TODO: H5Pset_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pget_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pget_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_num
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_collective_opt
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_chunk_opt_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_io_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_no_collective_cause
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */
diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c
new file mode 100644
index 0000000..acfc853
--- /dev/null
+++ b/java/src/jni/h5pFAPLImp.c
@@ -0,0 +1,1647 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5util.h"
+#include "h5pFAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * TODO: H5Pset_driver
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_driver
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1driver
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_driver((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1driver */
+
+/*
+ * TODO: H5Pget_driver_info
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fclose_degree
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
+ (JNIEnv *env, jclass clss, jlong plist, jint fc_degree)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fclose_degree((hid_t)plist, (H5F_close_degree_t)fc_degree)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fclose_degree
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5F_close_degree_t degree = H5F_CLOSE_DEFAULT;
+
+ UNUSED(clss);
+
+ if (H5Pget_fclose_degree((hid_t)plist, &degree) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)degree;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_core
+ * Signature: (JJZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_core
+ * Signature: (J[J[Z)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store)
+{
+ jboolean isCopy;
+ jboolean *backArray = NULL;
+ jlong *incArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == increment)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_core: increment is NULL");
+ if (NULL == backing_store)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_core: backing_store is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, increment, incArray, &isCopy, "H5Pget_fapl_core: incArray not pinned");
+ PIN_BOOL_ARRAY(ENVONLY, backing_store, backArray, &isCopy, "H5Pget_fapl_core: backArray not pinned");
+
+ {
+ /* Direct cast (size_t *)variable fails on 32-bit environment */
+ long long inc_temp = *incArray;
+ size_t inc_t = (size_t) inc_temp;
+
+ if ((status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *incArray = (jlong)inc_t;
+ }
+
+done:
+ if (backArray)
+ UNPIN_BOOL_ARRAY(ENVONLY, backing_store, backArray, (status < 0) ? JNI_ABORT : 0);
+ if (incArray)
+ UNPIN_LONG_ARRAY(ENVONLY, increment, incArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core */
+
+/*
+ * TODO: H5Pset_core_write_tracking
+ */
+
+/*
+ * TODO: H5Pget_core_write_tracking
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_direct
+ * Signature: (JJJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment,
+ jlong block_size, jlong cbuf_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_DIRECT
+ if ((retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+ UNUSED(alignment);
+ UNUSED(block_size);
+ UNUSED(cbuf_size);
+#endif
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_direct
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info)
+{
+#ifdef H5_HAVE_DIRECT
+ jboolean isCopy;
+ jlong *theArray = NULL;
+ size_t alignment = 0;
+ size_t block_size = 0;
+ size_t cbuf_size = 0;
+ jsize arrLen;
+#endif
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_DIRECT
+ if (NULL == info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info input array is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, info)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info array length < 0");
+ }
+ if (arrLen < 3)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info input array < 3");
+
+ PIN_LONG_ARRAY(ENVONLY, info, theArray, &isCopy, "H5Pget_fapl_direct: info not pinned");
+
+ if ((retVal = H5Pget_fapl_direct((hid_t)fapl_id, &alignment, &block_size, &cbuf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)alignment;
+ theArray[1] = (jlong)block_size;
+ theArray[2] = (jlong)cbuf_size;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+ UNUSED(info);
+#endif
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_family
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
+ (JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist)
+{
+ long ms = (long)memb_size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_family((hid_t)plist, (hsize_t)ms, (hid_t)memb_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_family
+ * Signature: (J[J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
+ (JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist)
+{
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ size_t i;
+ jlong *sizeArray = NULL;
+ jlong *plistArray = NULL;
+ jsize rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == memb_size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size is NULL");
+ if (NULL == memb_plist)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_plist is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, memb_size, sizeArray, &isCopy, "H5Pget_family: sizeArray not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, memb_size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size array length < 0");
+ }
+
+ if (NULL == (sa = (hsize_t *) HDmalloc((size_t) rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_family: memory allocation failed");
+
+ PIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, &isCopy, "H5Pget_family: plistArray not pinned");
+
+ if ((status = H5Pget_fapl_family((hid_t)tid, sa, (hid_t *)plistArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) rank; i++)
+ sizeArray[i] = (jlong)sa[i];
+
+done:
+ if (plistArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, (status < 0) ? JNI_ABORT : 0);
+ if (sa)
+ HDfree(sa);
+ if (sizeArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_size, sizeArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_family_offset
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong offset)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_family_offset((hid_t)fapl_id, (hsize_t)offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1family_1offset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_family_offset
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ hsize_t offset = 0;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_family_offset((hid_t)fapl_id, &offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)offset;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1family_1offset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_log
+ * Signature: (JLjava/lang/String;JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
+ (JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size)
+{
+ const char *pLogfile = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == logfile)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_fapl_log: log file name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, logfile, pLogfile, NULL, "H5Pset_fapl_log: log file name not pinned");
+
+ if ((retVal = H5Pset_fapl_log((hid_t)fapl_id, pLogfile, (unsigned long long)flags, (size_t)buf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (pLogfile)
+ UNPIN_JAVA_STRING(ENVONLY, logfile, pLogfile);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log */
+
+/*
+ * TODO: H5Pset_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pset_fapl_mpiposix
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpiposix
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
+ (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
+ jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax)
+{
+ const char * const *mName = NULL;
+ const char *utf8 = NULL;
+ jboolean isCopy;
+ jboolean bb;
+ jobject o;
+ jstring rstring;
+ jstring obj;
+ jclass Sjc;
+ size_t i;
+ jlong *thefaplArray = NULL;
+ jlong *theaddrArray = NULL;
+ jint *themapArray = NULL;
+ char *member_name[H5FD_MEM_NTYPES];
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char *));
+
+ if (memb_map)
+ PIN_INT_ARRAY(ENVONLY, memb_map, themapArray, &isCopy, "H5Pset_fapl_multi: memb_map not pinned");
+ if (memb_fapl)
+ PIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, &isCopy, "H5Pset_fapl_multi: memb_fapl not pinned");
+ if (memb_addr)
+ PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pset_fapl_multi: memb_addr not pinned");
+
+ if (memb_name) {
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ size_t str_len;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) memb_name, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ member_name[i] = NULL;
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Pset_fapl_multi: string not pinned");
+
+ str_len = HDstrlen(utf8);
+
+ if (NULL == (member_name[i] = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed");
+
+ HDstrncpy(member_name[i], utf8, str_len + 1);
+ (member_name[i])[str_len] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ }
+
+ mName = (const char * const *)member_name;
+ }
+
+ if ((status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray,
+ mName, (const haddr_t *)theaddrArray, (hbool_t)relax)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (memb_name && mName) {
+ if (NULL == (Sjc = ENVPTR->FindClass(ENVONLY, "java/lang/String")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ if (!member_name[i]) continue;
+
+ if (NULL == (rstring = ENVPTR->NewStringUTF(ENVONLY, member_name[i]))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters");
+ }
+
+ if (NULL == (o = ENVPTR->GetObjectArrayElement(ENVONLY, memb_name, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ ENVPTR->DeleteLocalRef(ENVONLY, rstring);
+ continue;
+ }
+
+ if (JNI_TRUE == (bb = ENVPTR->IsInstanceOf(ENVONLY, o, Sjc))) {
+ ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)rstring);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ ENVPTR->DeleteLocalRef(ENVONLY, o);
+ ENVPTR->DeleteLocalRef(ENVONLY, rstring);
+
+ HDfree(member_name[i]);
+ member_name[i] = NULL;
+ }
+ }
+
+done:
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ if (member_name[i])
+ HDfree(member_name[i]);
+ }
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (theaddrArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, (status < 0) ? JNI_ABORT : 0);
+ if (thefaplArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, (status < 0) ? JNI_ABORT : 0);
+ if (themapArray)
+ UNPIN_INT_ARRAY(ENVONLY, memb_map, themapArray, (status < 0) ? JNI_ABORT : 0);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
+ (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
+ jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr)
+{
+ jboolean isCopy;
+ jstring str;
+ herr_t status = FAIL;
+ size_t i;
+ jlong *thefaplArray = NULL;
+ jlong *theaddrArray = NULL;
+ jint *themapArray = NULL;
+ char **mName = NULL;
+ int relax = 0;
+ int retVal = 0;
+
+ UNUSED(clss);
+
+ if (memb_map)
+ PIN_INT_ARRAY(ENVONLY, memb_map, themapArray, &isCopy, "H5Pget_fapl_multi: memb_map not pinned");
+ if (memb_fapl)
+ PIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, &isCopy, "H5Pget_fapl_multi: memb_fapl not pinned");
+ if (memb_addr)
+ PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pget_fapl_multi: memb_addr not pinned");
+ if (memb_name)
+ if (NULL == (mName = (char **) HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed");
+
+ if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray,
+ mName, (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (memb_name && mName) {
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ if (mName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, mName[i]))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
+ }
+ }
+ }
+
+ retVal = (relax != 0);
+
+done:
+ h5str_array_free(mName, H5FD_MEM_NTYPES);
+ if (theaddrArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, (status < 0) ? JNI_ABORT : 0);
+ if (thefaplArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, (status < 0) ? JNI_ABORT : 0);
+ if (themapArray)
+ UNPIN_INT_ARRAY(ENVONLY, memb_map, themapArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jboolean)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi */
+
+/*
+ * TODO: H5Pset_multi_type
+ */
+
+/*
+ * TODO: H5Pget_multi_type
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_split
+ * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
+ (JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id)
+{
+ const char *mstr = NULL;
+ const char *rstr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == metaext)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_fapl_split: metaext is NULL");
+ if (NULL == rawext)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_fapl_split: rawext is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, metaext, mstr, NULL, "H5Pset_fapl_split: metaext not pinned");
+ PIN_JAVA_STRING(ENVONLY, rawext, rstr, NULL, "H5Pset_fapl_split: rawext not pinned");
+
+ if ((retVal = H5Pset_fapl_split((hid_t)fapl_id, mstr, (hid_t)meta_pl_id, rstr, (hid_t)raw_pl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (rstr)
+ UNPIN_JAVA_STRING(ENVONLY, rawext, rstr);
+ if (mstr)
+ UNPIN_JAVA_STRING(ENVONLY, metaext, mstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_sec2
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_sec2((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_stdio
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_stdio((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_windows
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_WINDOWS
+ if ((retVal = H5Pset_fapl_windows((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+#endif
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows */
+
+/*
+ * TODO: H5Pset_file_image
+ */
+
+/*
+ * TODO: H5Pget_file_image
+ */
+
+/*
+ * TODO: H5Pset_file_image_callbacks
+ */
+
+/*
+ * TODO: H5Pget_file_image_callbacks
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_meta_block_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_meta_block_size((hid_t)plist, (hsize_t)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_meta_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hsize_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_meta_block_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size */
+
+/*
+ * TODO: H5Pset_page_buffer_size
+ */
+
+/*
+ * TODO: H5Pget_page_buffer_size
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sieve_buf_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ size_t sz = (size_t)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_sieve_buf_size((hid_t)plist, (size_t)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sieve_buf_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ size_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_sieve_buf_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alignment
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alignment
+ (JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment)
+{
+ long thr = (long)threshold;
+ long align = (long)alignment;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_alignment((hid_t)plist, (hsize_t)thr, (hsize_t)align)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1alignment */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alignment
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alignment
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray alignment)
+{
+ jboolean isCopy;
+ hsize_t t = 0;
+ hsize_t a = 0;
+ jsize arrLen;
+ jlong *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == alignment)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: input alignment is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, alignment)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: alignment array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: alignment input array < 2");
+
+ PIN_LONG_ARRAY(ENVONLY, alignment, theArray, &isCopy, "H5Pget_alignment: input array not pinned");
+
+ if ((status = H5Pget_alignment((hid_t)plist, &t, &a)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)t;
+ theArray[1] = (jlong)a;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, alignment, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1alignment */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_cache
+ * Signature: (JIJJD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1cache
+ (JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts,
+ jlong rdcc_nbytes, jdouble rdcc_w0)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts,
+ (size_t)rdcc_nbytes, (double) rdcc_w0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_cache
+ * Signature: (J[I[J[J[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1cache
+ (JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts,
+ jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
+{
+ jboolean isCopy;
+ jdouble *w0Array = NULL;
+ jlong *rdcc_nelmtsArray = NULL;
+ jlong *nbytesArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+ UNUSED(mdc_nelmts);
+
+ if (NULL != rdcc_w0)
+ PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_cache: rdcc_w0 array not pinned");
+ if (NULL != rdcc_nelmts)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, &isCopy, "H5Pget_cache: rdcc_nelmts array not pinned");
+ if (NULL != rdcc_nbytes)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_cache: nbytesArray array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long rdcc_nelmts_temp = *rdcc_nelmtsArray;
+ long long nbytes_temp = *nbytesArray;
+ size_t rdcc_nelmts_t = (size_t) rdcc_nelmts_temp;
+ size_t nbytes_t = (size_t) nbytes_temp;
+
+ if ((status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t,
+ &nbytes_t, (double *)w0Array)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t;
+ *nbytesArray = (jlong)nbytes_t;
+ } /* end direct cast special */
+
+done:
+ if (nbytesArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, (status < 0) ? JNI_ABORT : 0);
+ if (rdcc_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (w0Array)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_file_cache_size
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
+ (JNIEnv *env, jclass clss, jlong plist, jint size)
+{
+ unsigned sz = (unsigned)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_elink_file_cache_size((hid_t)plist, (unsigned)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_file_cache_size
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ unsigned s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_elink_file_cache_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_evict_on_close
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
+{
+ hbool_t evict_on_close_val = FALSE;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ evict_on_close_val = (evict_on_close == JNI_TRUE) ? TRUE : FALSE;
+
+ if ((retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_evict_on_close
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ hbool_t evict_on_close_val = FALSE;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (evict_on_close_val == TRUE) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts)
+{
+ UNUSED(clss);
+
+ if (attempts <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_metadata_read_attempts: attempts <= 0");
+
+ if (H5Pset_metadata_read_attempts((hid_t)plist_id, (unsigned)attempts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id)
+{
+ unsigned attempts = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_metadata_read_attempts((hid_t)plist_id, &attempts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong) attempts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_config
+ * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
+ (JNIEnv *env, jclass clss, jlong plist, jobject cache_config)
+{
+ H5AC_cache_config_t cacheinfo;
+ const char *str = NULL;
+ jfieldID fid;
+ jstring j_str;
+ jclass cls;
+ jint flash_incr_mode;
+ jint incr_mode;
+ jint decr_mode;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+
+ if (NULL == (cls = ENVPTR->GetObjectClass(ENVONLY, cache_config)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "version", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.version = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "rpt_fcn_enabled", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.rpt_fcn_enabled = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "open_trace_file", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.open_trace_file = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "close_trace_file", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.close_trace_file = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "trace_file_name", "Ljava/lang/String;")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (j_str = (jstring)ENVPTR->GetObjectField(ENVONLY, cache_config, fid)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (j_str) {
+ PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_mdc_config: cache_config not pinned");
+
+ HDstrncpy(cacheinfo.trace_file_name, str, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
+ cacheinfo.trace_file_name[H5AC__MAX_TRACE_FILE_NAME_LEN] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, j_str, str);
+ str = NULL;
+ }
+ else
+ HDmemset(cacheinfo.trace_file_name, 0, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "evictions_enabled", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.evictions_enabled = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "set_initial_size", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.set_initial_size = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "initial_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.initial_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "min_clean_fraction", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.min_clean_fraction = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "min_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.min_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "epoch_length", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.epoch_length = (long int)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "incr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_incr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.incr_mode = (enum H5C_cache_incr_mode) incr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "lower_hr_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.lower_hr_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "increment", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.increment = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_max_increment", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_max_increment = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_increment", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_increment = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_incr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ flash_incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.flash_incr_mode = (enum H5C_cache_flash_incr_mode) flash_incr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_multiple", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.flash_multiple = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.flash_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "decr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ decr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_decr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.decr_mode = (enum H5C_cache_decr_mode) decr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "upper_hr_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.upper_hr_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "decrement", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.decrement = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_max_decrement", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_max_decrement = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_decrement", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_decrement = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "epochs_before_eviction", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.epochs_before_eviction = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_empty_reserve", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_empty_reserve = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "empty_reserve", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.empty_reserve = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "dirty_bytes_threshold", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.dirty_bytes_threshold = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "metadata_write_strategy", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.metadata_write_strategy = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((status = H5Pset_mdc_config((hid_t)plist, &cacheinfo)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (str)
+ UNPIN_JAVA_STRING(ENVONLY, j_str, str);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_config
+ * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
+ */
+JNIEXPORT jobject JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5AC_cache_config_t cacheinfo;
+ jstring j_str = NULL;
+ jvalue args[30];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+ cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION;
+
+ if ((status = H5Pget_mdc_config((hid_t)plist, &cacheinfo)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = cacheinfo.version;
+ args[1].z = cacheinfo.rpt_fcn_enabled;
+ args[2].z = cacheinfo.open_trace_file;
+ args[3].z = cacheinfo.close_trace_file;
+
+ if (NULL != cacheinfo.trace_file_name) {
+ if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, cacheinfo.trace_file_name))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters");
+ }
+ }
+
+ args[4].l = j_str;
+ args[5].z = cacheinfo.evictions_enabled;
+ args[6].z = cacheinfo.set_initial_size;
+ args[7].j = (jlong)cacheinfo.initial_size;
+ args[8].d = cacheinfo.min_clean_fraction;
+ args[9].j = (jlong)cacheinfo.max_size;
+ args[10].j = (jlong)cacheinfo.min_size;
+ args[11].j = cacheinfo.epoch_length;
+ args[12].i = cacheinfo.incr_mode;
+ args[13].d = cacheinfo.lower_hr_threshold;
+ args[14].d = cacheinfo.increment;
+ args[15].z = cacheinfo.apply_max_increment;
+ args[16].j = (jlong)cacheinfo.max_increment;
+ args[17].i = cacheinfo.flash_incr_mode;
+ args[18].d = cacheinfo.flash_multiple;
+ args[19].d = cacheinfo.flash_threshold;
+ args[20].i = cacheinfo.decr_mode;
+ args[21].d = cacheinfo.upper_hr_threshold;
+ args[22].d = cacheinfo.decrement;
+ args[23].z = cacheinfo.apply_max_decrement;
+ args[24].j = (jlong)cacheinfo.max_decrement;
+ args[25].i = cacheinfo.epochs_before_eviction;
+ args[26].z = cacheinfo.apply_empty_reserve;
+ args[27].d = cacheinfo.empty_reserve;
+ args[28].j = (jlong)cacheinfo.dirty_bytes_threshold;
+ args[29].i = cacheinfo.metadata_write_strategy;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args, ret_obj);
+
+done:
+ return ret_obj;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config */
+
+/*
+ * TODO: H5Pset_mdc_image_config
+ */
+
+/*
+ * TODO: H5Pget_mdc_image_config
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
+{
+ const char *locStr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == location)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_mdc_log_options: location string is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, location, locStr, NULL, "H5Pset_mdc_log_options: location string not pinned");
+
+ if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, locStr, (hbool_t)start_on_access)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (locStr)
+ UNPIN_JAVA_STRING(ENVONLY, location, locStr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
+{
+ jboolean isCopy;
+ jboolean *mdc_log_options_ptr = NULL;
+ hbool_t is_enabled;
+ hbool_t start_on_access;
+ ssize_t status = -1;
+ size_t location_size;
+ jsize arrLen;
+ char *lname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == mdc_log_options)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: mdc_log_options is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, mdc_log_options)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: mdc_log_options array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: length of mdc_log_options < 2");
+
+ PIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, &isCopy, "H5Pget_mdc_log_options: mdc_log_options array not pinned");
+
+ /* get the length of the filename */
+ if (H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!location_size)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: location_size is 0");
+
+ location_size++; /* add extra space for the null terminator */
+ if (NULL == (lname = (char *) HDmalloc(sizeof(char) * location_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed");
+
+ if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ lname[location_size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, lname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters");
+ }
+
+ mdc_log_options_ptr[0] = (jboolean)is_enabled;
+ mdc_log_options_ptr[1] = (jboolean)start_on_access;
+
+done:
+ if (lname)
+ HDfree(lname);
+ if (mdc_log_options_ptr)
+ UNPIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, (status < 0) ? JNI_ABORT : 0);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options */
+
+/*
+ * TODO: H5Pset_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pget_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pset_coll_metadata_write
+ */
+
+/*
+ * TODO: H5Pget_coll_metadata_write
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_gc_references
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref)
+{
+ unsigned gc_ref_val = 0;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ gc_ref_val = (gc_ref == JNI_TRUE) ? 1 : 0;
+
+ if ((retVal = H5Pset_gc_references((hid_t)fapl_id, gc_ref_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1gc_1references */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_gc_references
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ unsigned gc_ref_val = 0;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_gc_references((hid_t)fapl_id, (unsigned *)&gc_ref_val) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (gc_ref_val == 1) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1gc_1references */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_small_data_block_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long)size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_small_data_block_size((hid_t)plist, (hsize_t)sz)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_small_data_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hsize_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_small_data_block_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_libver_bounds
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
+ (JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_libver_bounds((hid_t)fapl_id, (H5F_libver_t)low, (H5F_libver_t)high)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_libver_bounds
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
+ (JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == libver)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_libver_bounds: libversion bounds is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, libver, theArray, &isCopy, "H5Pget_libver_bounds: input not pinned");
+
+ if ((retVal = H5Pget_libver_bounds((hid_t)fapl_id, (H5F_libver_t *)&(theArray[0]), (H5F_libver_t *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, libver, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds */
+
+/*
+ * TODO: H5Pset_object_flush_cb
+ */
+
+/*
+ * TODO: H5Pget_object_flush_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pFAPLImp.h b/java/src/jni/h5pFAPLImp.h
new file mode 100644
index 0000000..28b1d95
--- /dev/null
+++ b/java/src/jni/h5pFAPLImp.h
@@ -0,0 +1,501 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL
+#define _Included_hdf_hdf5lib_H5_H5PFAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * TODO: H5Pset_driver
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_driver
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1driver
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pget_driver_info
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fclose_degree
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fclose_degree
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_core
+ * Signature: (JJZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
+(JNIEnv *, jclass, jlong, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_core
+ * Signature: (J[J[Z)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
+(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray);
+
+/*
+ * TODO: H5Pset_core_write_tracking
+ */
+
+/*
+ * TODO: H5Pget_core_write_tracking
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_direct
+ * Signature: (JJJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
+(JNIEnv *, jclass, jlong, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_direct
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_family
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
+(JNIEnv *, jclass, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_family
+ * Signature: (J[J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
+(JNIEnv *, jclass, jlong, jlongArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_family_offset
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_family_offset
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_log
+ * Signature: (JLjava/lang/String;JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
+(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+
+/*
+ * TODO: H5Pset_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pset_fapl_mpiposix
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpiposix
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray);
+
+/*
+ * TODO: H5Pset_multi_type
+ */
+
+/*
+ * TODO: H5Pget_multi_type
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_split
+ * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
+(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_sec2
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_stdio
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_windows
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_file_image
+ */
+
+/*
+ * TODO: H5Pget_file_image
+ */
+
+/*
+ * TODO: H5Pset_file_image_callbacks
+ */
+
+/*
+ * TODO: H5Pget_file_image_callbacks
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_meta_block_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_meta_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_page_buffer_size
+ */
+
+/*
+ * TODO: H5Pget_page_buffer_size
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sieve_buf_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sieve_buf_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alignment
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alignment
+(JNIEnv *, jclass, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alignment
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alignment
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_cache
+ * Signature: (JIJJD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1cache
+(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_cache
+ * Signature: (J[I[J[J[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1cache
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_file_cache_size
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_file_cache_size
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_evict_on_close
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_evict_on_close
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_config
+ * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
+(JNIEnv *, jclass, jlong, jobject);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_config
+ * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
+ */
+JNIEXPORT jobject JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_mdc_image_config
+ */
+
+/*
+ * TODO: H5Pget_mdc_image_config
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jbooleanArray);
+
+/*
+ * TODO: H5Pset_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pget_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pset_coll_metadata_write
+ */
+
+/*
+ * TODO: H5Pget_coll_metadata_write
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_gc_references
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_gc_references
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_small_data_block_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_small_data_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_libver_bounds
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_libver_bounds
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * TODO: H5Pset_object_flush_cb
+ */
+
+/*
+ * TODO: H5Pget_object_flush_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */
diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c
new file mode 100644
index 0000000..2160496
--- /dev/null
+++ b/java/src/jni/h5pFCPLImp.c
@@ -0,0 +1,572 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pFCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_userblock
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1userblock
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long) size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_userblock
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1userblock
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
+{
+ jboolean isCopy;
+ hsize_t s;
+ jlong *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_userblock: size is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_userblock: size not pinned");
+
+ if ((status = H5Pget_userblock((hid_t)plist, &s)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)s;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sizes
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sizes
+ (JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sizes
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sizes
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
+{
+ jboolean isCopy;
+ jlong *theArray = NULL;
+ jsize arrLen;
+ size_t ss;
+ size_t sa;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size input array < 2 elements");
+
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sizes: size not pinned");
+
+ if ((status = H5Pget_sizes((hid_t)plist, &sa, &ss)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)sa;
+ theArray[1] = (jlong)ss;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sym_k
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
+ (JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sym_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
+ (JNIEnv *env, jclass clss, jlong plist, jintArray size)
+{
+ jboolean isCopy;
+ jsize arrLen;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size < 2 elements");
+
+ PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sym_k: size not pinned");
+
+ if ((status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_istore_k
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
+ (JNIEnv *env, jclass clss, jlong plist, jint ik)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_istore_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
+ (JNIEnv *env, jclass clss, jlong plist, jintArray ik)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == ik)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_store_k: ik is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, ik, theArray, &isCopy, "H5Pget_store_k: size not pinned");
+
+ if ((status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, ik, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_page_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_page_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hsize_t fsp_size = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)fsp_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_strategy
+ * Signature: (JIZJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold)
+{
+ UNUSED(clss);
+
+ if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy
+ * Signature: (J[Z[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold)
+{
+ H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
+ jboolean isCopy;
+ jboolean *persistArray = NULL;
+ jlong *thresholdArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (persist)
+ PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned");
+ if (threshold)
+ PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, "H5Pget_file_space: threshold not pinned");
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray, (hsize_t *)thresholdArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (thresholdArray)
+ UNPIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, (status < 0) ? JNI_ABORT : 0);
+ if (persistArray)
+ UNPIN_BOOL_ARRAY(ENVONLY, persist, persistArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)thestrategy;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_persist
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hbool_t persist = FALSE;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &persist, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jboolean)persist;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_threshold
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hsize_t threshold = 0;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &threshold)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)threshold;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_nindexes
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
+ (JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (nindexes > H5O_SHMESG_MAX_NINDEXES)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
+
+ if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_nindexes
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ unsigned nindexes;
+
+ UNUSED(clss);
+
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)nindexes;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_index
+ * Signature: (JIII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
+ jint mesg_type_flags, jint min_mesg_size)
+{
+ unsigned nindexes; /* Number of SOHM indexes */
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Check arguments */
+ if ((unsigned) mesg_type_flags > H5O_SHMESG_ALL_FLAG)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
+
+ /* Read the current number of indexes */
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Range check */
+ if ((unsigned) index_num >= nindexes)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index");
+
+ if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_index
+ * Signature: (JI[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info)
+{
+ jboolean isCopy;
+ unsigned nindexes; /* Number of SOHM indexes */
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == mesg_info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: mesg_info is NULL");
+
+ /* Read the current number of indexes */
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Range check */
+ if ((unsigned) index_num >= nindexes)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index");
+
+ PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned");
+
+ if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, mesg_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Check that values are sensible. The min_btree value must be no greater
+ * than the max list plus one.
+ *
+ * Range check to make certain they will fit into encoded form.
+ */
+
+ if (max_list + 1 < min_btree)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
+ if (max_list > H5O_SHMESG_MAX_LIST_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
+ if (min_btree > H5O_SHMESG_MAX_LIST_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
+
+ if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_phase_change: size is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, size, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pFCPLImp.h b/java/src/jni/h5pFCPLImp.h
new file mode 100644
index 0000000..57fcae8
--- /dev/null
+++ b/java/src/jni/h5pFCPLImp.h
@@ -0,0 +1,207 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL
+#define _Included_hdf_hdf5lib_H5_H5PFCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_userblock
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1userblock
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_userblock
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1userblock
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sizes
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sizes
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sizes
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sizes
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sym_k
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sym_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_istore_k
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_istore_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_page_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_page_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_strategy
+ * Signature: (JIZJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
+(JNIEnv *, jclass, jlong, jint, jboolean, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy
+ * Signature: (J[Z[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
+(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_persist
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_threshold
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_nindexes
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_nindexes
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_index
+ * Signature: (JIII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
+(JNIEnv *, jclass, jlong, jint, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_index
+ * Signature: (JI[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
+(JNIEnv *, jclass, jlong, jint, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */
diff --git a/java/src/jni/h5pGAPLImp.c b/java/src/jni/h5pGAPLImp.c
new file mode 100644
index 0000000..9540387
--- /dev/null
+++ b/java/src/jni/h5pGAPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pGAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pGAPLImp.h b/java/src/jni/h5pGAPLImp.h
new file mode 100644
index 0000000..73ad4a8
--- /dev/null
+++ b/java/src/jni/h5pGAPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PGAPL
+#define _Included_hdf_hdf5lib_H5_H5PGAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PGAPL */
diff --git a/java/src/jni/h5pGCPLImp.c b/java/src/jni/h5pGCPLImp.c
new file mode 100644
index 0000000..2ba1c7d
--- /dev/null
+++ b/java/src/jni/h5pGCPLImp.c
@@ -0,0 +1,227 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pGCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_local_heap_size_hint
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_local_heap_size_hint
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
+ (JNIEnv *env, jclass clss, jlong gcpl_id)
+{
+ size_t size_hint = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)size_hint;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
+ (JNIEnv *env, jclass clss, jlong gcpl_id)
+{
+ unsigned crt_order_flags;
+
+ UNUSED(clss);
+
+ if (H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)crt_order_flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_est_link_info
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Range check values */
+ if ((est_num_entries > 65535) || (est_name_len > 65535))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_est_link_info: est. name length or number of entries must be < 65536");
+
+ if ((retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_est_link_info
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == link_info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_est_link_info: link_info is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, link_info, theArray, &isCopy, "H5Pget_est_link_info: input not pinned");
+
+ if ((retVal = H5Pget_est_link_info((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, link_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (max_compact < min_dense)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be >= min dense value");
+ if (max_compact > 65535)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be < 65536");
+ if (min_dense > 65535)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: min dense value must be < 65536");
+
+ if ((retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == links)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_link_phase_change: links is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, links, theArray, &isCopy, "H5Pget_link_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_link_phase_change((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, links, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pGCPLImp.h b/java/src/jni/h5pGCPLImp.h
new file mode 100644
index 0000000..9c32063
--- /dev/null
+++ b/java/src/jni/h5pGCPLImp.h
@@ -0,0 +1,99 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PGCPL
+#define _Included_hdf_hdf5lib_H5_H5PGCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_local_heap_size_hint
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_local_heap_size_hint
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_est_link_info
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_est_link_info
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PGCPL */
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index ac21d1d..726e08c 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -26,7 +26,11 @@ extern "C" {
#include "h5util.h"
#include "h5pImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
+
extern jobject copy_callback;
extern jobject close_callback;
extern jobject create_callback;
@@ -44,17 +48,16 @@ typedef struct _cb_wrapper {
/* Local Prototypes */
/********************/
-static herr_t H5P_cls_create_func_cb(hid_t prop_id, void *create_data);
-static herr_t H5P_cls_copy_func_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data);
-static herr_t H5P_cls_close_func_cb(hid_t prop_id, void *close_data);
-
-static herr_t H5P_prp_create_func_cb(const char *name, size_t size, void *value);
-static herr_t H5P_prp_copy_func_cb(const char *name, size_t size, void *value);
-static herr_t H5P_prp_close_func_cb(const char *name, size_t size, void *value);
-static int H5P_prp_compare_func_cb(void *value1, void *value2, size_t size);
-static herr_t H5P_prp_get_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
-static herr_t H5P_prp_set_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
-static herr_t H5P_prp_delete_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_cls_create_cb(hid_t prop_id, void *create_data);
+static herr_t H5P_cls_copy_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data);
+static herr_t H5P_cls_close_cb(hid_t prop_id, void *close_data);
+static herr_t H5P_prp_create_cb(const char *name, size_t size, void *value);
+static herr_t H5P_prp_copy_cb(const char *name, size_t size, void *value);
+static herr_t H5P_prp_close_cb(const char *name, size_t size, void *value);
+static int H5P_prp_compare_cb(void *value1, void *value2, size_t size);
+static herr_t H5P_prp_get_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_prp_set_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_prp_delete_cb(hid_t prop_id, const char *name, size_t size, void *value);
static herr_t H5P_iterate_cb(hid_t prop_id, const char *name, void *cb_data);
@@ -67,37 +70,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pcreate
(JNIEnv *env, jclass clss, jlong type)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Pcreate((hid_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Pcreate((hid_t) type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Pcreate */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pclose
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = 0;
-
- if (plist > 0)
- retVal = H5Pclose((hid_t)plist);
-
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pclose */
-
-/*
- * Class: hdf_hdf5lib_H5
* Method: H5Pget_class
* Signature: (J)J
*/
@@ -105,12 +90,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Pget_class((hid_t) plist);
- if (retVal == H5P_ROOT)
- h5libraryError(env);
+ if ((retVal = H5Pget_class((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ /*
+ * if (retVal == H5P_ROOT)
+ * H5_LIBRARY_ERROR(ENVONLY);
+ */
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class */
@@ -123,2027 +115,264 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pcopy
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Pcopy((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pcopy((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Pcopy */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_userblock
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1userblock
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- herr_t retVal = -1;
- long sz = (long)size;
-
- retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_userblock
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1userblock
- (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t s;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_userblock: size is NULL");
- } /* end if */
- else {
- theArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_userblock: size not pinned");
- } /* end if */
- else {
- status = H5Pget_userblock((hid_t)plist, &s);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)s;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sizes
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sizes
- (JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sizes
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sizes
- (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- size_t ss;
- size_t sa;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_sizes: size is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) {
- h5badArgument(env, "H5Pget_sizes: size input array < 2 elements");
- }
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_sizes: size not pinned");
- } /* end if */
- else {
- status = H5Pget_sizes((hid_t)plist, &sa, &ss);
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)sa;
- theArray[1] = (jlong)ss;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sym_k
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
- (JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sym_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
- (JNIEnv *env, jclass clss, jlong plist, jintArray size)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_sym_k: size is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) {
- h5badArgument(env, "H5Pget_sym_k: size < 2 elements");
- } /* end else if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_sym_k: size not pinned");
- } /* end if */
- else {
- status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]));
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_istore_k
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
- (JNIEnv *env, jclass clss, jlong plist, jint ik)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_istore_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
- (JNIEnv *env, jclass clss, jlong plist, jintArray ik)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (ik == NULL) {
- h5nullArgument(env, "H5Pget_store_k: ik is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ik, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_store_k: size not pinned");
- } /* end if */
- else {
- status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]));
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_layout
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1layout
- (JNIEnv *env, jclass clss, jlong plist, jint layout)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_layout((hid_t)plist, (H5D_layout_t)layout);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1layout */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_layout
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1layout
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5D_layout_t retVal = H5D_LAYOUT_ERROR;
-
- retVal = H5Pget_layout((hid_t)plist);
- if (retVal == H5D_LAYOUT_ERROR)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1layout */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk
- * Signature: (JI[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk
- (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim)
-{
- herr_t status = -1;
- jbyte *theArray;
- jboolean isCopy;
- hsize_t *da;
- hsize_t *lp;
- jlong *jlp;
- size_t i;
- size_t rank;
-
- if (dim == NULL) {
- h5nullArgument(env, "H5Pset_chunk: dim array is NULL");
- } /* end if */
- else {
- i = (size_t)ENVPTR->GetArrayLength(ENVPAR dim);
- rank = i / sizeof(jlong);
- if (rank < ndims) {
- h5badArgument(env, "H5Pset_chunk: dims array < ndims");
- } /* end if */
- else {
- theArray = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR dim, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pset_chunk: dim array not pinned");
- } /* end if */
- else {
- da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t));
- if (da == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pset_chunk: dims not converted to hsize_t");
- } /* end if */
- else {
- jlp = (jlong *)theArray;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t)*jlp;
- lp++;
- jlp++;
- } /* end if */
-
- status = H5Pset_chunk((hid_t)plist, (int)ndims, da);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT);
- HDfree(da);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk
- * Signature: (JI[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk
- (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t *da;
- int i;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Pget_chunk: dims is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR dims) < max_ndims) {
- h5badArgument(env, "H5Pget_chunk: dims array < max_ndims");
- } /* end else if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_chunk: input dims not pinned");
- } /* end if */
- else {
- da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t));
- if (da == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_chunk: dims not converted to hsize_t");
- } /* end if */
- else {
- status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT);
- HDfree (da);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < max_ndims; i++) {
- theArray[i] = (jlong)da[i];
- }
- HDfree (da);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alignment
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alignment
- (JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment)
-{
- herr_t retVal = -1;
- long thr = (long)threshold;
- long align = (long)alignment;
-
- retVal = H5Pset_alignment((hid_t)plist, (hsize_t)thr, (hsize_t)align);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1alignment */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alignment
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alignment
- (JNIEnv *env, jclass clss, jlong plist, jlongArray alignment)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t t;
- hsize_t a;
-
- if (alignment == NULL) {
- h5nullArgument(env, "H5Pget_alignment: input alignment is NULL");
- } /* end if */
- else {
- if (ENVPTR->GetArrayLength(ENVPAR alignment) < 2) {
- h5badArgument(env, "H5Pget_alignment: alignment input array < 2");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR alignment, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_alignment: input array not pinned");
- } /* end if */
- else {
- status = H5Pget_alignment((hid_t)plist, &t, &a);
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)t;
- theArray[1] = (jlong)a;
- ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1alignment */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_external
- * Signature: (JLjava/lang/String;JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1external
- (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size)
-{
- herr_t status = -1;
- const char *fileName;
- off_t off;
- hsize_t sz;
- hid_t plid;
-
- plid = (hid_t)plist;
- off = (off_t)offset;
- sz = (hsize_t)size;
-
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Pset_external(plid, fileName, off, sz);
-
- UNPIN_JAVA_STRING(name, fileName);
-
- if (status < 0)
- h5libraryError(env);
- }
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1external */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external_count
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external_1count
- (JNIEnv *env, jclass clss, jlong plist)
-{
- int retVal = -1;
-
- retVal = H5Pget_external_count((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1external_1count */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external
- * Signature: (JIJ[Ljava/lang/String;[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external
- (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size,
- jobjectArray name, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- char *file = NULL;
- jstring str;
- off_t o;
- hsize_t s;
-
- if (name_size < 0) {
- h5badArgument(env, "H5Pget_external: name_size < 0");
- } /* end if */
- else if ((size != NULL) && (ENVPTR->GetArrayLength(ENVPAR size) < 2)) {
- h5badArgument(env, "H5Pget_external: size input array < 2");
- } /* end else if */
- else {
- if (name_size > 0) {
- file = (char *)HDmalloc(sizeof(char)*(size_t)name_size);
- } /* end else */
-
- status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size,
- file, (off_t *)&o, (hsize_t *)&s);
- if (status < 0) {
- HDfree(file);
- h5libraryError(env);
- } /* end if */
- else {
- if (size != NULL) {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5Pget_external: size array not pinned");
- } /* end if */
- else {
- theArray[0] = o;
- theArray[1] = (jlong)s;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- }
- } /* end if */
-
- if (file != NULL) {
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR file);
- if (str == NULL) {
- HDfree(file);
- h5JNIFatalError(env, "H5Pget_external: return array not created");
- } /* end if */
- else {
- /* SetObjectArrayElement may raise exceptions */
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- HDfree(file);
- } /* end else */
- } /* end if */
- } /* end else */
- }
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
- (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
-{
- jint status = -1;
- jbyte *byteP = NULL;
- jboolean isCopy;
-
- if (value != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned");
- } /* end if */
- else {
- status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- }
- } /* end if */
- else {
- status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
- }
-
- if (status < 0)
- h5libraryError(env);
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1value */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
- (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
-{
- jint status = -1;
- jbyte *byteP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5badArgument(env, "H5Pget_fill_value: value is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned");
- } /* end if */
- else {
- status = H5Pget_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1value */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags,
- jlong cd_nelmts, jintArray cd_values)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (cd_values == NULL) {
- status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int)flags, (size_t)cd_nelmts, NULL);
- if (status < 0)
- h5libraryError(env);
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pset_filter: input array not pinned");
- }/* end if */
- else {
- status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, theArray, JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1filter */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nfilters
+ * Method: H5Pclose
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nfilters
- (JNIEnv *env, jclass clss, jlong plist)
-{
- int retVal = -1;
-
- retVal = H5Pget_nfilters((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1nfilters */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags,
- jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
-{
- herr_t status = -1;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jint *cd_valuesArray;
- jint mode = JNI_ABORT;
- jboolean isCopy;
- jstring str;
- char *filter;
-
- if (namelen <= 0) {
- h5badArgument(env, "H5Pget_filter: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5badArgument(env, "H5Pget_filter: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_values is NULL");
- } /* end else if */
- else {
- filter = (char *)HDmalloc(sizeof(char)*(size_t)namelen);
- if (filter == NULL) {
- h5outOfMemory(env, "H5Pget_filter: namelen malloc failed");
- } /* end if */
- else {
- flagsArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: flags array not pinned");
- } /* end if */
- else {
- cd_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned");
- } /* end if */
- else {
- cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned");
- } /* end if */
- else {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
- unsigned int filter_config;
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, filter, &filter_config);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- /* end direct cast special */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mode = 0;
-
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR filter);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: return string not pinned");
- } /* end if */
- else {
- /* SetObjectArrayElement may throw exceptiosn */
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, mode);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, mode);
- }
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, mode);
- }
- HDfree(filter);
- }
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_driver
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1driver
+Java_hdf_hdf5lib_H5__1H5Pclose
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Pget_driver((hid_t) plist);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jlong)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1driver */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_cache
- * Signature: (JIJJD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1cache
- (JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts,
- jlong rdcc_nbytes, jdouble rdcc_w0)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts,
- (size_t)rdcc_nbytes, (double) rdcc_w0);
- if (retVal < 0)
- h5libraryError(env);
+ if (plist >= 0)
+ if ((retVal = H5Pclose((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_cache
- * Signature: (J[I[J[J[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1cache
- (JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts,
- jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
-{
- herr_t status = -1;
- jint mode;
- jdouble *w0Array = (jdouble *)NULL;
- jlong *rdcc_nelmtsArray = (jlong *)NULL;
- jlong *nbytesArray = (jlong *)NULL;
- jboolean isCopy;
-
- if (rdcc_w0 != NULL) {
- w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy);
- if (w0Array == NULL) {
- h5JNIFatalError(env, "H5Pget_cache: w0_array array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- if (rdcc_nelmts != NULL) {
- rdcc_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nelmts, &isCopy);
- if (rdcc_nelmtsArray == NULL) {
- /* exception -- out of memory */
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- }
- h5JNIFatalError(env, "H5Pget_cache: rdcc_nelmts array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- if (rdcc_nbytes != NULL) {
- nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy);
- if (nbytesArray == NULL) {
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- if (rdcc_nelmtsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_cache: nbytesArray array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long rdcc_nelmts_temp = *(rdcc_nelmtsArray);
- size_t rdcc_nelmts_t = (size_t)rdcc_nelmts_temp;
- long long nbytes_temp = *(nbytesArray);
- size_t nbytes_t = (size_t)nbytes_temp;
-
- status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t,
- &nbytes_t, (double *)w0Array);
-
- *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t;
- *nbytesArray = (jlong)nbytes_t;
- } /* end direct cast special */
-
-
- if (status < 0) {
- mode = JNI_ABORT;
- } /* end if */
- else {
- mode = 0; /* commit and free */
- } /* end else */
-
- if (rdcc_nelmtsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, mode);
- } /* end if */
-
- if (nbytesArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode);
- } /* end if */
-
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode);
- } /* end if */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer
- * Signature: (JJ[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer
- (JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg)
-{
- h5unimplemented(env, "H5Pset_buffer: not implemented");
- return -1;
-#ifdef notdef
-
-/* DON'T IMPLEMENT THIS!!! */
- jint status = -1;
- jbyte *tconvP;
- jbyte *bkgP;
- jboolean isCopy;
-
- if (tconv == NULL)
- tconvP = (jbyte *)NULL;
- else {
- tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy);
- if (tconvP == NULL) {
- h5JNIFatalError(env, "H5Pset_buffer: tconv not pinned");
- return -1;
- }
- }
- if (bkg == NULL)
- bkgP = (jbyte *)NULL;
- else {
- bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy);
- if (bkgP == NULL) {
- h5JNIFatalError(env, "H5Pset_buffer: bkg not pinned");
- return -1;
- }
- }
-
- status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP);
- if (status < 0) {
- if (tconv != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT);
- if (bkg != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT);
- h5libraryError(env);
- return -1;
- }
-
- if (tconv != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0);
- if (bkg != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0);
-
- return (jint)status;
-#endif
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */
+} /* end Java_hdf_hdf5lib_H5__1H5Pclose */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer
- * Signature: (J[B[B)I
+ * TODO: H5Pencode
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer
- (JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg)
-{
- h5unimplemented(env, "H5Pget_buffer: not implemented");
- return -1;
-#ifdef notdef
-
-/* DON'T IMPLEMENT THIS!!! */
- jlong status = -1;
- jbyte *tconvP;
- jbyte *bkgP;
- jboolean isCopy;
-
- if (tconv == NULL) {
- h5nullArgument(env, "H5Pget_buffer: tconv input array is NULL");
- return -1;
- }
- tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy);
- if (tconvP == NULL) {
- h5JNIFatalError(env, "H5Pget_buffer: tconv not pinned");
- return -1;
- }
- if (bkg == NULL) {
- h5nullArgument(env, "H5Pget_buffer: bkg array is NULL");
- return -1;
- }
- bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy);
- if (bkgP == NULL) {
- h5JNIFatalError(env, "H5Pget_buffer: bkg not pinned");
- return -1;
- }
-
- status = H5Pget_buffer((hid_t)plist, tconvP, bkgP);
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT);
- h5libraryError(env);
- return -1;
- }
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0);
-
- return (jint)status;
-#endif
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer_size
- * Signature: (JJ)V
+ * TODO: H5Pdecode
*/
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- size_t size = 0;
-
- size = H5Pget_buffer((hid_t)plist, NULL, NULL);
- if (size == 0)
- h5libraryError(env);
-
- return (jlong)size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_preserve
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1preserve
- (JNIEnv *env, jclass clss, jlong plist, jboolean status)
-{
- hbool_t st;
- herr_t retVal = -1;
-
- if (status == JNI_TRUE) {
- st = TRUE;
- } /* end if */
- else if (status == JNI_FALSE) {
- st = false;
- } /* end else if */
- else {
- h5badArgument(env, "H5Pset_preserve: status not TRUE or FALSE");
- return -1;
- } /* end else */
-
- retVal = H5Pset_preserve((hid_t)plist, st);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_preserve
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1preserve
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pget_preserve((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_deflate
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1deflate
- (JNIEnv *env, jclass clss, jlong plist, jint level)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_deflate((hid_t)plist, (unsigned)level);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1deflate */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_gc_references
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref)
-{
- herr_t retVal = -1;
- unsigned gc_ref_val;
-
- if (gc_ref == JNI_TRUE)
- gc_ref_val = 1;
- else
- gc_ref_val = 0;
-
- retVal = H5Pset_gc_references((hid_t)fapl_id, gc_ref_val);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1gc_1references */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_gc_references
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
- (JNIEnv *env, jclass clss, jlong fapl_id)
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class
+ (JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op,
+ jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data)
{
- unsigned gc_ref_val = 0;
- jboolean bval = JNI_FALSE;
-
- if (H5Pget_gc_references((hid_t)fapl_id, (unsigned *)&gc_ref_val) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- if (gc_ref_val == 1)
- bval = JNI_TRUE;
- } /* end else */
+ const char *cstr = NULL;
+ hid_t class_id = H5I_INVALID_HID;
- return bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1gc_1references */
+ UNUSED(clss);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_btree_ratios
- * Signature: (JDDD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
- (JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right)
-{
- herr_t status = -1;
+ create_callback = create_op;
+ close_callback = close_op;
+ copy_callback = copy_op;
- status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right);
- if (status < 0)
- h5libraryError(env);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "_H5Pcreate_class: class name is NULL");
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class: class name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_btree_ratios
- * Signature: (J[D[D[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
- (JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left,
- jdoubleArray middle, jdoubleArray right)
-{
- herr_t status = -1;
- jdouble *leftP;
- jdouble *middleP;
- jdouble *rightP;
- jboolean isCopy;
-
- if (left == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: left input array is NULL");
- } /* end if */
- else if (middle == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: middle input array is NULL");
- } /* end else if */
- else if (right == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: right input array is NULL");
- } /* end else if */
- else {
- leftP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR left, &isCopy);
- if (leftP == NULL) {
- h5JNIFatalError(env, "H5Pget_btree_ratios: left not pinned");
- } /* end if */
- else {
- middleP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR middle, &isCopy);
- if (middleP == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned");
- } /* end if */
- else {
- rightP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR right, &isCopy);
- if (rightP == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned");
- } /* end if */
- else {
- status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP,
- (double *)middleP, (double *)rightP);
- if (status < 0) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void *) create_data,
+ (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void *) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void *) close_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_small_data_block_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- long sz = (long)size;
- herr_t retVal = -1;
-
- retVal = H5Pset_small_data_block_size((hid_t)plist, (hsize_t)sz);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size */
+ return (jlong)class_id;
+} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_small_data_block_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class_nocb
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- hsize_t s;
-
- if (H5Pget_small_data_block_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alloc_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
- (JNIEnv *env, jclass clss, jlong plist, jint alloc_time)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_alloc_time((hid_t)plist, (H5D_alloc_time_t)alloc_time);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alloc_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
- (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_alloc_time_t time;
-
- if (alloc_time == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_alloc_time: alloc_time is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR alloc_time, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_alloc_time: alloc_time not pinned");
- } /* end if */
- else {
- retVal = H5Pget_alloc_time((hid_t)plist, &time);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = time;
- ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
- (JNIEnv *env, jclass clss, jlong plist, jint fill_time)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_fill_time((hid_t)plist, (H5D_fill_time_t)fill_time);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
- (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_fill_time_t time;
-
- if (fill_time == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_fill_time: fill_time is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR fill_time, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_time: fill_time not pinned");
- } /* end if */
- else {
- retVal = H5Pget_fill_time((hid_t)plist, &time);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jint)time;
- ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pfill_value_defined
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
- (JNIEnv *env, jclass clss, jlong plist, jintArray status)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_fill_value_t value;
-
- if (status == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pfill_value_defined: status is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR status, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pfill_value_defined: status not pinned");
- } /* end if */
- else {
- retVal = H5Pfill_value_defined((hid_t)plist, &value);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = value;
- ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fletcher32
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_fletcher32((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_edc_check
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
- (JNIEnv *env, jclass clss, jlong plist, jint check)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_edc_check
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5Z_EDC_t retVal = -1;
-
- retVal = H5Pget_edc_check((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shuffle
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shuffle
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_shuffle((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shuffle */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_szip
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1szip
- (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_szip((hid_t)plist, (unsigned int)options_mask, (unsigned int)pixels_per_block);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1szip */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_hyper_vector_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong vector_size)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_hyper_vector_size
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
- (JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size)
-{
- herr_t retVal = -1;
- jlong *theArray;
- size_t size;
- jboolean isCopy;
-
- if (vector_size == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_hyper_vector_size: vector_size is NULL");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR vector_size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_hyper_vector_size: vector_size not pinned");
- } /* end if */
- else {
- retVal = H5Pget_hyper_vector_size((hid_t)plist, &size);
- if (retVal < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pall_filters_avail
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
- (JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- htri_t bval = JNI_FALSE;
-
- bval = H5Pall_filters_avail((hid_t)dcpl_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
-
- return (jboolean)bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pmodify_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pmodify_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jint flags, jlong cd_nelmts, jintArray cd_values)
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
+ (JNIEnv *env, jclass clss, jlong parent_class, jstring name)
{
- herr_t status = -1;
- jint *cd_valuesP;
- jboolean isCopy;
+ const char *cstr = NULL;
+ hid_t class_id = H5I_INVALID_HID;
- if (cd_values == NULL) {
- h5nullArgument(env, "H5Pmodify_filter: cd_values is NULL");
- } /* end if */
- else {
- cd_valuesP = ENVPTR->GetIntArrayElements(ENVPAR cd_values,&isCopy);
- if (cd_valuesP == NULL) {
- h5JNIFatalError(env, "H5Pmodify_filter: cd_values not pinned");
- } /* end if */
- else {
- status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter,(const unsigned int)flags,
- (size_t)cd_nelmts, (unsigned int *)cd_valuesP);
+ UNUSED(clss);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesP, JNI_ABORT);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "_H5Pcreate_class_nocb: class name is NULL");
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class_nocb: class name not pinned");
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pmodify_1filter */
+ if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
-{
- jboolean isCopy;
- herr_t status = -1;
- jint *cd_valuesArray;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jstring str;
- char *aName;
- int i = 0;
- int rank;
- long bs;
-
- bs = (long)namelen;
- if (bs <= 0) {
- h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL");
- } /* end else if */
- else if (name == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: name is NULL");
- } /* end else if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed");
- return -1;
- } /* end if */
-
- flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
-
- cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned");
- return -1;
- } /* end if */
-
- cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- rank = ENVPTR->GetArrayLength(ENVPAR cd_values);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int.");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
- unsigned int filter_config;
-
- status = H5Pget_filter_by_id2( (hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, (char *)aName, &filter_config);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special */
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
-
- HDfree(aName);
- } /* end else */
- } /* end else */
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */
+ return (jlong)class_id;
+} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fclose_degree
- * Signature: (JI)I
+ * Method: H5Pregister2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
- (JNIEnv *env, jclass clss, jlong plist, jint fc_degree)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
+ jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete,
+ jobject prp_copy, jobject prp_cmp, jobject prp_close)
{
- herr_t retVal = -1;
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- retVal = H5Pset_fclose_degree((hid_t)plist, (H5F_close_degree_t)fc_degree);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree */
+ copy_callback = prp_copy;
+ close_callback = prp_close;
+ create_callback = prp_create;
+ compare_callback = prp_cmp;
+ set_callback = prp_set;
+ get_callback = prp_get;
+ delete_callback = prp_delete;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fclose_degree
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5F_close_degree_t degree;
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pregister2: property name is NULL");
- if (H5Pget_fclose_degree((hid_t)plist, &degree) < 0)
- h5libraryError(env);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2: property name not pinned");
- return (jint)degree;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree */
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2: default property value buffer not pinned");
+ if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, (H5P_prp_create_func_t)H5P_prp_create_cb,
+ (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
+ (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
-/**********************************************************************
- * *
- * File access properties *
- * *
- **********************************************************************/
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pregister2 */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_family
- * Signature: (JJJ)I
+ * Method: H5Pregister2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
- (JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
{
- long ms = (long)memb_size;
- herr_t retVal = -1;
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- retVal = H5Pset_fapl_family((hid_t)plist, (hsize_t)ms, (hid_t)memb_plist);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family */
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pregister2_nocb: property name is NULL");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_family
- * Signature: (J[J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
- (JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist)
-{
- herr_t status = -1;
- jlong *sizeArray;
- jlong *plistArray;
- jint mode = JNI_ABORT;
- jboolean isCopy;
- hsize_t *sa;
- size_t i;
- size_t rank;
-
- if (memb_size == NULL) {
- h5nullArgument(env, "H5Pget_family: memb_size is NULL");
- } /* end if */
- else if (memb_plist == NULL) {
- h5nullArgument(env, "H5Pget_family: memb_plist is NULL");
- } /* end else if */
- else {
- sizeArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_size, &isCopy);
- if (sizeArray == NULL) {
- h5JNIFatalError(env, "H5Pget_family: sizeArray not pinned");
- } /* end if */
- else {
- rank = (size_t)ENVPTR->GetArrayLength(ENVPAR memb_size);
- sa = (hsize_t *)HDmalloc(rank * sizeof(hsize_t));
- if (sa == NULL) {
- h5JNIFatalError(env, "H5Screate-simple: dims not converted to hsize_t");
- } /* end if */
- else {
- plistArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_plist, &isCopy);
- if (plistArray == NULL) {
- h5JNIFatalError(env, "H5Pget_family: plistArray not pinned");
- } /* end if */
- else {
- status = H5Pget_fapl_family ((hid_t)tid, sa, (hid_t *)plistArray);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- sizeArray[i] = (jlong)sa[i];
- } /* end for */
- mode = 0;
- } /* end else */
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_plist, plistArray, mode);
- }
- HDfree(sa);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, mode);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2_nocb: property name not pinned");
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_core
- * Signature: (JJZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store)
-{
- herr_t retVal = -1;
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2_nocb: default property value buffer not pinned");
- retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store);
- if (retVal < 0)
- h5libraryError(env);
+ if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core */
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pregister2_1nocb */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_core
- * Signature: (J[J[Z)I
+ * Method: H5Pinsert2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
- (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pinsert2
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
+ jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete,
+ jobject prp_copy, jobject prp_cmp, jobject prp_close)
{
- herr_t status = -1;
- jint mode = JNI_ABORT;
- jlong *incArray;
- jboolean *backArray;
- jboolean isCopy;
-
- if (increment == NULL) {
- h5nullArgument(env, "H5Pget_fapl_core: increment is NULL");
- } /* end if */
- else if (backing_store == NULL) {
- h5nullArgument(env, "H5Pget_fapl_core: backing_store is NULL");
- } /* end else if */
- else {
- incArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR increment, &isCopy);
- if (incArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_core: incArray not pinned");
- } /* end if */
- else {
- backArray = (jboolean *)ENVPTR->GetBooleanArrayElements(ENVPAR backing_store, &isCopy);
- if (backArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_core: backArray not pinned");
- } /* end if */
- else {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long inc_temp = *(incArray);
- size_t inc_t = (size_t)inc_temp;
-
- status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray);
-
- *incArray = (jlong)inc_t;
- /* end direct cast special */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mode = 0;
- } /* end else */
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR backing_store, backArray, mode);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR increment, incArray, mode);
- }
- } /* end else */
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core */
+ UNUSED(clss);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_family_offset
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong offset)
-{
- herr_t retVal = -1;
+ copy_callback = prp_copy;
+ close_callback = prp_close;
+ compare_callback = prp_cmp;
+ set_callback = prp_set;
+ get_callback = prp_get;
+ delete_callback = prp_delete;
- retVal = H5Pset_family_offset ((hid_t)fapl_id, (hsize_t)offset);
- if (retVal < 0)
- h5libraryError(env);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pinsert2: property name is NULL");
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1family_1offset */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pinsert2: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_family_offset
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- hsize_t offset = 0;
- herr_t retVal = -1;
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2: property value buffer not pinned");
- retVal = H5Pget_family_offset ((hid_t)fapl_id, &offset);
- if (retVal < 0)
- h5libraryError(env);
+ if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf,
+ (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
+ (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jlong)offset;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1family_1offset */
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_log
- * Signature: (JLjava/lang/String;JJ)V
+ * Method: H5Pinsert2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
- (JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size)
+Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
{
- herr_t retVal = -1;
- const char *pLogfile;
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- PIN_JAVA_STRING(logfile, pLogfile);
- if (pLogfile != NULL) {
- retVal = H5Pset_fapl_log( (hid_t)fapl_id, pLogfile, (unsigned long long)flags, (size_t)buf_size );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(logfile, pLogfile);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pinsert2_nocb: property name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pinsert2_nocb: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Premove_filter
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5P1remove_1filter
- (JNIEnv *env, jclass clss, jlong obj_id, jint filter)
-{
- herr_t status = -1;
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2_nocb: property value buffer not pinned");
- status = H5Premove_filter ((hid_t)obj_id, (H5Z_filter_t)filter);
- if (status < 0)
- h5libraryError(env);
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5P1remove_1filter */
+ if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb */
/*
* Class: hdf_hdf5lib_H5
@@ -2154,18 +383,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pset
(JNIEnv *env, jclass clss, jlong plid, jstring name, jint val)
{
- hid_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pset((hid_t)plid, cstr, &val);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset: property name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pset: property name not pinned");
+
+ if ((retVal = H5Pset((hid_t)plid, cstr, &val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset */
@@ -2179,20 +412,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pexist
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- htri_t bval = JNI_FALSE;
- const char *cstr;
+ const char *cstr = NULL;
+ htri_t bval = JNI_FALSE;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- bval = H5Pexist((hid_t)plid, cstr);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pexist: property name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pexist: property name not pinned");
+
+ if ((bval = H5Pexist((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Pexist */
@@ -2206,19 +443,23 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1size
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- hid_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
size_t size = 0;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pget_size((hid_t)plid, cstr, &size);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_size: property name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pget_size: property name not pinned");
+
+ if ((status = H5Pget_size((hid_t)plid, cstr, &size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jlong) size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1size */
@@ -2232,11 +473,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1nprops
(JNIEnv *env, jclass clss, jlong plid)
{
- size_t nprops;
+ size_t nprops = 0;
+
+ UNUSED(clss);
if (H5Pget_nprops((hid_t)plid, &nprops) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)nprops;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1nprops */
@@ -2249,20 +493,23 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class_1name
(JNIEnv *env, jclass clss, jlong plid)
{
- char *c_str;
- jstring j_str = NULL;
+ char *c_str = NULL;
+ jstring j_str = NULL;
- c_str = H5Pget_class_name((hid_t)plid);
- if (c_str == NULL) {
- h5libraryError(env);
- } /* end if */
- else {
- j_str = ENVPTR->NewStringUTF(ENVPAR c_str);
+ UNUSED(clss);
+
+ if (NULL == (c_str = H5Pget_class_name((hid_t)plid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, c_str))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (c_str)
H5free_memory(c_str);
- if (j_str == NULL)
- h5JNIFatalError(env,"H5Pget_class_name: return string failed");
- } /* end else */
return j_str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1name */
@@ -2275,12 +522,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class_1parent
(JNIEnv *env, jclass clss, jlong plid)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Pget_class_parent((hid_t)plid);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pget_class_parent((hid_t)plid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1parent */
@@ -2293,12 +542,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pisa_1class
(JNIEnv *env, jclass clss, jlong plid, jlong pcls)
{
- htri_t retVal = -1;
+ htri_t retVal = FAIL;
- retVal = H5Pisa_class((hid_t)plid, (hid_t)pcls);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Pisa_class((hid_t)plid, (hid_t)pcls)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pisa_1class */
@@ -2311,19 +562,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- herr_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
jint val;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pget((hid_t)plid, cstr, &val);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget: property name is NULL");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pget: property name not pinned");
+
+ if ((status = H5Pget((hid_t)plid, cstr, &val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)val;
} /* end Java_hdf_hdf5lib_H5_H5Pget */
@@ -2337,2653 +592,193 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pequal
(JNIEnv *env, jclass clss, jlong plid1, jlong plid2)
{
- htri_t retVal = -1;
+ htri_t retVal = FAIL;
- retVal = H5Pequal((hid_t)plid1, (hid_t)plid2);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pequal */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pcopy_prop
- * Signature: (JJLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pcopy_1prop
- (JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name)
-{
- herr_t retVal = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pcopy_prop((hid_t)dst_plid, (hid_t)src_plid, cstr);
-
- UNPIN_JAVA_STRING(name, cstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Pequal((hid_t)plid1, (hid_t)plid2)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pcopy_1prop */
+} /* end Java_hdf_hdf5lib_H5_H5Pequal */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Premove
- * Signature: (JLjava/lang/String;)I
+ * Method: H5Piterate
+ * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Premove
- (JNIEnv *env, jclass clss, jlong plid, jstring name)
+Java_hdf_hdf5lib_H5_H5Piterate
+ (JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, jobject op_data)
{
- herr_t retVal = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Premove((hid_t)plid, cstr);
-
- UNPIN_JAVA_STRING(name, cstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Premove */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Punregister
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Punregister
- (JNIEnv *env, jclass clss, jlong plid, jstring name)
-{
- herr_t retVal = -1;
- const char *cstr;
+ UNUSED(clss);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Punregister((hid_t)plid, cstr);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Piterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Piterate: callback_op is NULL");
- if (retVal < 0)
- h5libraryError(env);
+ if (NULL == idx) {
+ if ((status = H5Piterate((hid_t)prop_id, NULL, (H5P_iterate_t)H5P_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Punregister */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pclose_class
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose_1class
- (JNIEnv *env, jclass clss, jlong plid)
-{
- herr_t retVal = -1;
-
- retVal = H5Pclose_class((hid_t)plid);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pclose_1class */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter2
- (JNIEnv *env, jclass clss, jlong plist, jint filter_number,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen,
- jobjectArray name, jintArray filter_config)
-{
- herr_t status = -1;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jint *cd_valuesArray;
- jint *filter_configArray;
- jboolean isCopy;
- char *filter;
- jstring str;
-
- if (namelen <= 0) {
- h5badArgument(env, "H5Pget_filter: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5badArgument(env, "H5Pget_filter: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL");
- } /* end else if */
- else if (filter_config == NULL) {
- h5badArgument(env, "H5Pget_filter: filter_config is NULL");
- } /* end else if */
else {
- filter = (char*)HDmalloc(sizeof(char)*(size_t)namelen);
- if (filter == NULL) {
- h5outOfMemory(env, "H5Pget_filter: namelent malloc failed");
- return -1;
- } /* end if */
- flagsArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: flags array not pinned");
- return -1;
- } /* end if */
-
- cd_nelmtsArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned");
- return -1;
- } /* end if */
- filter_configArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy);
- if (filter_configArray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: filter_config array not pinned");
- return -1;
- } /* end if */
-
- if (*cd_nelmtsArray == 0 && cd_values == NULL) {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = 0;
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, NULL,
- (size_t)namelen, filter, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end if */
- else {
- if (cd_values == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_values is NULL");
- return -1;
- } /* end if */
- cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, filter, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special */
- } /* end else */
-
- if (status < 0) {
- if (cd_values)
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5libraryError(env);
- } /* end if */
- else {
- if (cd_values)
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR filter);
- HDfree(filter);
- if (str == NULL)
- h5JNIFatalError(env, "H5Pget_filter: return string not pinned");
- else
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
+ PIN_INT_ARRAY(ENVONLY, idx, theArray, &isCopy, "H5Piterate: idx not pinned");
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */
+ if ((status = H5Piterate((hid_t)prop_id, (int *)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config)
-{
- herr_t status = -1;
- int i = 0;
- jint *cd_valuesArray;
- jint *flagsArray;
- jint *filter_configArray;
- jlong *cd_nelmtsArray;
- jboolean isCopy;
- long bs;
- char *aName;
- jstring str;
-
- bs = (long)namelen;
- if (bs <= 0) {
- h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL");
- } /* end else if */
- else if (name == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: name is NULL");
- } /* end else if */
- else if (filter_config == NULL) {
- h5badArgument(env, "H5Pget_filter_by_id: filter_config is NULL");
- } /* end else if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed");
- return -1;
- } /* end if */
- flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags,&isCopy);
- if (flagsArray == NULL) {
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
- cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned");
- return -1;
- } /* end if */
- cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int.");
- return -1;
- } /* end if */
- filter_configArray = ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy);
- if (filter_configArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- HDfree(aName);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0);
- } /* end else */
- } /* end else */
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, idx, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nlinks
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nlinks
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- size_t nlinks;
- if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0)
- h5libraryError(env);
-
- return (jlong) nlinks;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nlinks
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nlinks
- (JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks)
-{
- herr_t retVal = -1;
-
- if (nlinks <= 0) {
- h5badArgument(env, "H5Pset_1nlinks: nlinks_l <= 0");
- } /* end if */
- else {
- retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_libver_bounds
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
- (JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver)
-{
- herr_t retVal = -1;
- H5F_libver_t *theArray = NULL;
- jboolean isCopy;
-
- if (libver == NULL) {
- h5nullArgument(env, "H5Pget_libver_bounds: libversion bounds is NULL");
- } /* end if */
- else {
- theArray = (H5F_libver_t*)ENVPTR->GetIntArrayElements(ENVPAR libver, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_libver_bounds: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_libver_bounds((hid_t)fapl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_libver_bounds
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
- (JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_libver_bounds((hid_t)fapl_id, (H5F_libver_t)low, (H5F_libver_t)high);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
- (JNIEnv *env, jclass clss, jlong gcpl_id)
-{
- unsigned crt_order_flags;
-
- if(H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0)
- h5libraryError(env);
-
- return (jint)crt_order_flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */
+} /* end Java_hdf_hdf5lib_H5_H5Piterate */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_creation_order
- * Signature: (JI)I
+ * Method: H5Pcopy_prop
+ * Signature: (JJLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags)
+Java_hdf_hdf5lib_H5_H5Pcopy_1prop
+ (JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name)
{
- herr_t retVal = -1;
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
- retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags);
- if(retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pcopy_prop: property name is NULL");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
- (JNIEnv *env, jclass clss, jlong ocpl_id)
-{
- unsigned crt_order_flags;
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pcopy_prop: property name not pinned");
- if(H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0)
- h5libraryError(env);
+ if ((retVal = H5Pcopy_prop((hid_t)dst_plid, (hid_t)src_plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)crt_order_flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
- (JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_copy_object
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
- (JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options);
- if(retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_copy_object
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
- (JNIEnv *env, jclass clss, jlong ocp_plist_id)
-{
- unsigned copy_options;
-
- if(H5Pget_copy_object((hid_t)ocp_plist_id, &copy_options) < 0)
- h5libraryError(env);
-
- return (jint)copy_options;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_create_intermediate_group
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
- (JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_create_intermediate_group
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
- (JNIEnv *env, jclass clss, jlong lcpl_id)
-{
- unsigned crt_intermed_group;
-
- if(H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0)
- h5libraryError(env);
-
- return (jboolean)crt_intermed_group;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */
+} /* end Java_hdf_hdf5lib_H5_H5Pcopy_1prop */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_data_transform
+ * Method: H5Premove
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
- (JNIEnv *env, jclass clss, jlong plist_id, jstring expression)
-{
- herr_t retVal = -1;
- const char *express;
-
- PIN_JAVA_STRING(expression, express);
- if (express != NULL) {
- retVal = H5Pset_data_transform((hid_t)plist_id, express);
-
- UNPIN_JAVA_STRING(expression, express);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_data_transform
- * Signature: (J[Ljava/lang/String;J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
- (JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size)
-{
- size_t buf_size;
- char *express;
- jlong express_size = -1;
- jstring str = NULL;
-
- if (size <= 0) {
- h5badArgument(env, "H5Pget_data_transform: size <= 0");
- } /* end if */
- else {
- express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, (char*)NULL, (size_t)size);
- if(express_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)express_size + 1;/* add extra space for the null terminator */
- express = (char*)HDmalloc(sizeof(char) * buf_size);
- if (express == NULL) {
- h5outOfMemory(env, "H5Pget_data_transform: malloc failed ");
- } /* end if */
- else {
- express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, express, (size_t)size);
- if (express_size < 0) {
- HDfree(express);
- h5libraryError(env);
- }
- else {
- str = ENVPTR->NewStringUTF(ENVPAR express);
- HDfree(express);
- if (str == NULL)
- h5JNIFatalError(env, "H5Pget_data_transform: return string not created");
- else
- ENVPTR->SetObjectArrayElement(ENVPAR expression, 0, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- return express_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_acc_flags
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- unsigned flags;
-
- if(H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0)
- h5libraryError(env);
-
- return (jint)flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_acc_flags
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
- (JNIEnv *env, jclass clss, jlong lapl_id, jint flags)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint) retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense)
-{
- herr_t retVal = -1;
-
- if(max_compact < min_dense) {
- h5badArgument(env, "H5Pset_link_phase_change: max compact value must be >= min dense value");
- } /* end if */
- else if(max_compact > 65535) {
- h5badArgument(env, "H5Pset_link_phase_change: max compact value must be < 65536");
- } /* end else if */
- else if(min_dense > 65535) {
- h5badArgument(env, "H5Pset_link_phase_change: min dense value must be < 65536");
- } /* end else if */
- else {
- retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
- (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (links == NULL) {
- h5nullArgument( env, "H5Pget_link_phase_change: links is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR links, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5Pget_link_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_link_phase_change((hid_t)gcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
- (JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (attributes == NULL) {
- h5nullArgument(env, "H5Pget_attr_phase_change: attributes is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR attributes, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_attr_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_phase_change
- * Signature: (JII)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
- (JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense);
- if(retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
- (JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_shared_mesg_phase_change: size is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_shared_mesg_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree)
-{
- herr_t retVal = -1;
-
- /* Check that values are sensible. The min_btree value must be no greater
- * than the max list plus one.
- *
- * Range check to make certain they will fit into encoded form.
- */
-
- if(max_list + 1 < min_btree) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
- } /* end if */
- else if(max_list > H5O_SHMESG_MAX_LIST_SIZE) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
- } /* end else if */
- else if(min_btree > H5O_SHMESG_MAX_LIST_SIZE) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
- } /* end else if */
- else {
- retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_nindexes
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- unsigned nindexes;
-
- if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
- h5libraryError(env);
-
- return (jint)nindexes;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_nindexes
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
- (JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
-{
- herr_t retVal = -1;
-
- if (nindexes > H5O_SHMESG_MAX_NINDEXES) {
- h5badArgument(env, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
- } /* end if */
- else {
- retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_index
- * Signature: (JIII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
- jint mesg_type_flags, jint min_mesg_size)
-{
- herr_t retVal = -1;
- unsigned nindexes;/* Number of SOHM indexes */
-
- /* Check arguments */
- if(mesg_type_flags > H5O_SHMESG_ALL_FLAG) {
- h5badArgument(env, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
- } /* end if */
- else if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) { /* Read the current number of indexes */
- h5libraryError(env);
- } /* end else if */
- else {
- /* Range check */
- if((unsigned)index_num >= nindexes) {
- h5badArgument(env, "H5Pset_shared_mesg_index: index_num is too large; no such index");
- } /* end if */
- else {
- retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_index
- * Signature: (JI[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info)
-{
- herr_t retVal = -1;
- unsigned nindexes;/* Number of SOHM indexes */
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- /* Read the current number of indexes */
- if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes)<0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* Range check */
- if((unsigned)index_num >= nindexes) {
- h5badArgument(env, "H5Pget_shared_mesg_index: index_num is too large; no such index");
- } /* end if */
- else if (mesg_info == NULL) {
- h5nullArgument(env, "H5Pget_shared_mesg_index: mesg_info is NULL");
- } /* end else if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR mesg_info, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_shared_mesg_index: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_local_heap_size_hint
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
- (JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_local_heap_size_hint
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
- (JNIEnv *env, jclass clss, jlong gcpl_id)
-{
- size_t size_hint;
-
- if(H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0)
- h5libraryError(env);
-
- return (jlong)size_hint;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nbit
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nbit
- (JNIEnv *env, jclass clss, jlong plist_id)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_nbit((hid_t)plist_id);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1nbit */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_scaleoffset
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
- (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor)
-{
- herr_t retVal = -1;
-
- /* Check arguments */
- if(scale_factor < 0) {
- h5badArgument(env, "H5Pset_scaleoffset: scale factor must be > 0");
- } /* end if */
- else {
- if(scale_type != H5Z_SO_FLOAT_DSCALE && scale_type != H5Z_SO_FLOAT_ESCALE && scale_type != H5Z_SO_INT){
- h5badArgument(env, "H5Pset_scaleoffset: invalid scale type");
- } /* end if */
- else {
- retVal = H5Pset_scaleoffset((hid_t)plist_id, (H5Z_SO_scale_type_t)scale_type, scale_factor);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_est_link_info
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len)
+Java_hdf_hdf5lib_H5_H5Premove
+ (JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- herr_t retVal = -1;
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
- /* Range check values */
- if((est_num_entries > 65535) || (est_name_len > 65535)) {
- h5badArgument(env, "H5Pset_est_link_info: est. name length or number of entries must be < 65536");
- } /* end if */
- else {
- retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_est_link_info
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
- (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
+ UNUSED(clss);
- if (link_info == NULL) {
- h5nullArgument(env, "H5Pget_est_link_info: link_info is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR link_info,&isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_est_link_info: input not pinned");
- } /* end if */
- else {
- retVal= H5Pget_est_link_info((hid_t)gcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Premove: property name is NULL");
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Premove: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_fapl
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
- (JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id)
-{
- herr_t retVal = -1;
+ if ((retVal = H5Premove((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pget_elink_fapl
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- hid_t retVal = -1;
-
- retVal = H5Pget_elink_fapl((hid_t)lapl_id);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jlong)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */
+} /* end Java_hdf_hdf5lib_H5_H5Premove */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_prefix
+ * Method: H5Punregister
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
- (JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix)
-{
- herr_t retVal = -1;
- const char *aName;
-
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_elink_prefix((hid_t)lapl_id, aName);
-
- UNPIN_JAVA_STRING(prefix, aName);
-
- if(retVal < 0)
- h5libraryError(env);
- }
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_prefix
- * Signature: (J[Ljava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
- (JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix)
-{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- if (prefix == NULL) {
- h5nullArgument(env, "H5Pget_elink_prefix: prefix is NULL");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_elink_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)pre, size);
-
- if (prefix_size < 0) {
- HDfree(pre);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_elink_prefix: return string not created");
- } /* end if */
- else
- ENVPTR->SetObjectArrayElement(ENVPAR prefix, 0, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return prefix_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_direct
- * Signature: (JJJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment,
- jlong block_size, jlong cbuf_size)
+Java_hdf_hdf5lib_H5_H5Punregister
+ (JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- herr_t retVal = -1;
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
-#ifdef H5_HAVE_DIRECT
- retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size);
-#endif
- if(retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct */
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Punregister: property name is NULL");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_direct
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
- (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info)
-{
- herr_t retVal = -1;
-
-#ifdef H5_HAVE_DIRECT
- size_t alignment = 0;
- size_t block_size = 0;
- size_t cbuf_size = 0;
- jlong *theArray;
- jboolean isCopy;
- if (info == NULL) {
- h5nullArgument(env, "H5Pget_fapl_direct: info input array is NULL");
- } /* end if */
- else {
- if (ENVPTR->GetArrayLength(ENVPAR info) < 3) {
- h5badArgument( env, "H5Pget_fapl_direct: info input array < 4");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR info, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_direct: info not pinned");
- } /* end if */
- else {
- retVal = H5Pget_fapl_direct((hid_t)fapl_id, &alignment, &block_size, &cbuf_size);
- if(retVal < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)alignment;
- theArray[1] = (jlong)block_size;
- theArray[2] = (jlong)cbuf_size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-#else
- if (retVal < 0)
- h5libraryError(env);
-#endif
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Punregister: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_sec2
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- herr_t retVal = -1;
+ if ((retVal = H5Punregister((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Pset_fapl_sec2((hid_t) fapl_id);
- if (retVal < 0)
- h5libraryError(env);
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 */
+} /* end Java_hdf_hdf5lib_H5_H5Punregister */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_stdio
+ * Method: _H5Pclose_class
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
- (JNIEnv *env, jclass clss, jlong fapl_id)
+Java_hdf_hdf5lib_H5__1H5Pclose_1class
+ (JNIEnv *env, jclass clss, jlong plid)
{
- herr_t retVal = -1;
-
- retVal = H5Pset_fapl_stdio((hid_t) fapl_id);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio */
+ herr_t retVal = FAIL;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_windows
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- herr_t retVal = -1;
+ UNUSED(clss);
-#ifdef H5_HAVE_WINDOWS
- retVal = H5Pset_fapl_windows((hid_t) fapl_id);
-#endif
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pclose_class((hid_t)plid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
- (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
- jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr)
-{
- herr_t status = -1;
- int i;
- jint *themapArray = NULL;
- jlong *thefaplArray = NULL;
- jlong *theaddrArray = NULL;
- char **mName = NULL;
- jstring str;
- jboolean isCopy;
- int relax = 0;
-
- if (memb_map) {
- themapArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy);
- if (themapArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_fapl) {
- thefaplArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy);
- if (thefaplArray == NULL) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_addr) {
- theaddrArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy);
- if (theaddrArray == NULL) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_name)
- mName = (char**)HDcalloc(H5FD_MEM_NTYPES, sizeof (*mName));
-
- status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t*)themapArray, (hid_t*)thefaplArray, mName, (haddr_t*)theaddrArray, (hbool_t*)&relax);
-
- if (status < 0) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT);
- if (memb_name) h5str_array_free(mName, H5FD_MEM_NTYPES);
- h5libraryError(env);
- } /* end if */
- else {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0);
-
- if (memb_name) {
- if (mName) {
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- if (*(mName + i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(mName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)str);
- } /* end if */
- } /* for (i=0; i<n; i++)*/
- } /* end if */
- h5str_array_free(mName, H5FD_MEM_NTYPES);
- } /* end if */
- } /* end else */
-
- return (relax!=0);
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
- (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
- jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax)
-{
- herr_t status = -1;
- jint *themapArray = NULL;
- jlong *thefaplArray = NULL;
- jlong *theaddrArray = NULL;
- jboolean isCopy;
- jclass Sjc;
- jstring rstring;
- jobject o;
- jboolean bb;
- const char **mName = NULL;
- char *member_name[H5FD_MEM_NTYPES];
-
- if (memb_map) {
- themapArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy);
- if (themapArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned");
- return;
- } /* end if */
- } /* end if */
-
- if (memb_fapl) {
- thefaplArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy);
- if (thefaplArray == NULL) {
- if (memb_map)
- ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned");
- return;
- } /* end if */
- } /* end if */
-
- if (memb_addr) {
- theaddrArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy);
- if (theaddrArray == NULL) {
- if (memb_map)
- ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl)
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned");
- return;
- } /* end if */
- } /* end if */
-
- HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char*));
- if (memb_name) {
- int i;
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) memb_name, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- member_name[i] = (char*)HDmalloc(HDstrlen(utf8) + 1);
- if (member_name[i]) {
- strcpy(member_name[i], utf8);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
- mName = (const char **)member_name;
- } /* end if */
-
- status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray, mName, (const haddr_t *)theaddrArray, (hbool_t)relax);
-
- if (status < 0) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT);
- if (memb_name) {
- int i;
- for (i = 0; i < H5FD_MEM_NTYPES; i++)
- HDfree(member_name[i]);
- } /* end if */
- h5libraryError(env);
- } /* end if */
- else {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0);
- if (memb_name) {
- if (mName != NULL) {
- int i;
- Sjc = ENVPTR->FindClass(ENVPAR "java/lang/String");
- if (Sjc != NULL) {
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- rstring = ENVPTR->NewStringUTF(ENVPAR member_name[i]);
- o = ENVPTR->GetObjectArrayElement(ENVPAR memb_name, i);
- if (o != NULL) {
- bb = ENVPTR->IsInstanceOf(ENVPAR o, Sjc);
- if (bb == JNI_TRUE) {
- ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)rstring);
- } /* end if */
- ENVPTR->DeleteLocalRef(ENVPAR o);
- } /* end if */
- HDfree(member_name[i]);
- } /* end for */
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_split
- * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
- (JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id)
-{
- herr_t retVal = -1;
- const char *mstr;
- const char *rstr;
-
- PIN_JAVA_STRING_TWO(metaext, mstr, rawext, rstr);
- if (mstr != NULL && rstr != NULL) {
- retVal = H5Pset_fapl_split((hid_t)fapl_id, mstr, (hid_t)meta_pl_id, rstr, (hid_t)raw_pl_id);
-
- UNPIN_JAVA_STRING_TWO(metaext, mstr, rawext, rstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_meta_block_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- long sz = (long)size;
-
- if (H5Pset_meta_block_size((hid_t)plist, (hsize_t)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_meta_block_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- hsize_t s;
-
- if (H5Pget_meta_block_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sieve_buf_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- size_t sz = (size_t)size;
-
- if (H5Pset_sieve_buf_size((hid_t)plist, (size_t)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sieve_buf_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- size_t s;
-
- if (H5Pget_sieve_buf_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_file_cache_size
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
- (JNIEnv *env, jclass clss, jlong plist, jint size)
-{
- unsigned sz = (unsigned)size;
-
- if (H5Pset_elink_file_cache_size((hid_t)plist, (unsigned)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_file_cache_size
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- unsigned s;
-
- if (H5Pget_elink_file_cache_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jint)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size */
-
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_config
- * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
- */
-JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5AC_cache_config_t cacheinfo;
- herr_t status = -1;
- jvalue args[30];
- jstring j_str = NULL;
- jobject ret_obj = NULL;
-
- HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
- cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION;
-
- status = H5Pget_mdc_config((hid_t)plist, &cacheinfo);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = cacheinfo.version;
- args[1].z = cacheinfo.rpt_fcn_enabled;
- args[2].z = cacheinfo.open_trace_file;
- args[3].z = cacheinfo.close_trace_file;
- if (cacheinfo.trace_file_name != NULL) {
- j_str = ENVPTR->NewStringUTF(ENVPAR cacheinfo.trace_file_name);
- } /* end if */
- args[4].l = j_str;
- args[5].z = cacheinfo.evictions_enabled;
- args[6].z = cacheinfo.set_initial_size;
- args[7].j = (jlong)cacheinfo.initial_size;
- args[8].d = cacheinfo.min_clean_fraction;
- args[9].j = (jlong)cacheinfo.max_size;
- args[10].j = (jlong)cacheinfo.min_size;
- args[11].j = cacheinfo.epoch_length;
- args[12].i = cacheinfo.incr_mode;
- args[13].d = cacheinfo.lower_hr_threshold;
- args[14].d = cacheinfo.increment;
- args[15].z = cacheinfo.apply_max_increment;
- args[16].j = (jlong)cacheinfo.max_increment;
- args[17].i = cacheinfo.flash_incr_mode;
- args[18].d = cacheinfo.flash_multiple;
- args[19].d = cacheinfo.flash_threshold;
- args[20].i = cacheinfo.decr_mode;
- args[21].d = cacheinfo.upper_hr_threshold;
- args[22].d = cacheinfo.decrement;
- args[23].z = cacheinfo.apply_max_decrement;
- args[24].j = (jlong)cacheinfo.max_decrement;
- args[25].i = cacheinfo.epochs_before_eviction;
- args[26].z = cacheinfo.apply_empty_reserve;
- args[27].d = cacheinfo.empty_reserve;
- args[28].j = (jlong)cacheinfo.dirty_bytes_threshold;
- args[29].i = cacheinfo.metadata_write_strategy;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args);
- } /* end else */
- return ret_obj;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_config
- * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
- (JNIEnv *env, jclass clss, jlong plist, jobject cache_config)
-{
- herr_t status = -1;
- jclass cls;
- jfieldID fid;
- jstring j_str;
- const char *str;
- H5AC_cache_config_t cacheinfo;
-
- cls = ENVPTR->GetObjectClass(ENVPAR cache_config);
- fid = ENVPTR->GetFieldID(ENVPAR cls, "version", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: version");
- return;
- } /* end if */
- cacheinfo.version = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading version failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "rpt_fcn_enabled", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: rpt_fcn_enabled");
- return;
- } /* end if */
- cacheinfo.rpt_fcn_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading rpt_fcn_enabled failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "open_trace_file", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: open_trace_file");
- return;
- } /* end if */
- cacheinfo.open_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading open_trace_file failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "close_trace_file", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: close_trace_file");
- return;
- } /* end if */
- cacheinfo.close_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading close_trace_file failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "trace_file_name", "Ljava/lang/String;");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: trace_file_name");
- return;
- } /* end if */
- j_str = (jstring)ENVPTR->GetObjectField(ENVPAR cache_config, fid);
- str = ENVPTR->GetStringUTFChars(ENVPAR j_str, NULL);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pset_mdc_config: out of memory trace_file_name");
- return;
- } /* end if */
- HDstrncpy(cacheinfo.trace_file_name, str, 1025);
- ENVPTR->ReleaseStringUTFChars(ENVPAR j_str, str);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading trace_file_name failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "evictions_enabled", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: evictions_enabled");
- return;
- } /* end if */
- cacheinfo.evictions_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading evictions_enabled failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "set_initial_size", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: set_initial_size");
- return;
- } /* end if */
- cacheinfo.set_initial_size = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading set_initial_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "initial_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: initial_size");
- return;
- } /* end if */
- cacheinfo.initial_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading initial_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "min_clean_fraction", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: min_clean_fraction");
- return;
- } /* end if */
- cacheinfo.min_clean_fraction = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading min_clean_fraction failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_size");
- return;
- } /* end if */
- cacheinfo.max_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "min_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: min_size");
- return;
- } /* end if */
- cacheinfo.min_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading min_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "epoch_length", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: epoch_length");
- return;
- }
- cacheinfo.epoch_length = (long int)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading epoch_length failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "incr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: incr_mode");
- return;
- } /* end if */
- cacheinfo.incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_incr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading incr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "lower_hr_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: lower_hr_threshold");
- return;
- } /* end if */
- cacheinfo.lower_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading lower_hr_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "increment", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: increment");
- return;
- } /* end if */
- cacheinfo.increment = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_increment", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_max_increment");
- return;
- } /* end if */
- cacheinfo.apply_max_increment = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_increment", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_increment");
- return;
- } /* end if */
- cacheinfo.max_increment = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_incr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_incr_mode");
- return;
- } /* end if */
- cacheinfo.flash_incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_incr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_multiple", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_multiple");
- return;
- } /* end if */
- cacheinfo.flash_multiple = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_multiple failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_threshold");
- return;
- } /* end if */
- cacheinfo.flash_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "decr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: decr_mode");
- return;
- } /* end if */
- cacheinfo.decr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_decr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading decr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "upper_hr_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: upper_hr_threshold");
- return;
- } /* end if */
- cacheinfo.upper_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading upper_hr_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "decrement", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: decrement");
- return;
- } /* end if */
- cacheinfo.decrement = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_decrement", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_max_decrement");
- return;
- } /* end if */
- cacheinfo.apply_max_decrement = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_decrement", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_decrement");
- return;
- } /* end if */
- cacheinfo.max_decrement = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "epochs_before_eviction", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: epochs_before_eviction");
- return;
- } /* end if */
- cacheinfo.epochs_before_eviction = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading epochs_before_eviction failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_empty_reserve", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_empty_reserve");
- return;
- } /* end if */
- cacheinfo.apply_empty_reserve = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_empty_reserve failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "empty_reserve", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: empty_reserve");
- return;
- } /* end if */
- cacheinfo.empty_reserve = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading empty_reserve failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "dirty_bytes_threshold", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: dirty_bytes_threshold");
- return;
- } /* end if */
- cacheinfo.dirty_bytes_threshold = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading dirty_bytes_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "metadata_write_strategy", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: metadata_write_strategy");
- return;
- } /* end if */
- cacheinfo.metadata_write_strategy = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading metadata_write_strategy failed");
- } /* end if */
- else {
- status = H5Pset_mdc_config((hid_t)plist, &cacheinfo);
-
- if (status < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_cache
- * Signature: (JJJD)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
- (JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots,
- jlong rdcc_nbytes, jdouble rdcc_w0)
-{
- if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_cache
- * Signature: (J[J[J[D)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
- (JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots,
- jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
-{
- herr_t status = -1;
- jint mode;
- jdouble *w0Array = (jdouble *)NULL;
- jlong *rdcc_nslotsArray = (jlong *)NULL;
- jlong *nbytesArray = (jlong *)NULL;
- jboolean isCopy;
-
- if (rdcc_w0 != NULL) {
- w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy);
- if (w0Array == NULL) {
- h5JNIFatalError(env, "H5Pget_chunk_cache: w0_array array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- if (rdcc_nslots != NULL) {
- rdcc_nslotsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nslots, &isCopy);
- if (rdcc_nslotsArray == NULL) {
- /* exception -- out of memory */
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_chunk_cache: rdcc_nslots array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- if (rdcc_nbytes != NULL) {
- nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy);
- if (nbytesArray == NULL) {
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- if (rdcc_nslotsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_chunk_cache: nbytesArray array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long rdcc_nslots_temp = *(rdcc_nslotsArray);
- size_t rdcc_nslots_t = (size_t)rdcc_nslots_temp;
- long long nbytes_temp = *(nbytesArray);
- size_t nbytes_t = (size_t)nbytes_temp;
-
- status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array);
-
- *rdcc_nslotsArray = (jlong)rdcc_nslots_t;
- *nbytesArray = (jlong)nbytes_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- mode = JNI_ABORT;
- } /* end if */
- else {
- mode = 0; /* commit and free */
- } /* end else */
-
- if (rdcc_nslotsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, mode);
- }
- /* end if */
- if (nbytesArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode);
- } /* end if */
-
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_obj_track_times
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
- (JNIEnv *env, jclass clss, jlong objplid)
-{
- hbool_t track_times;
-
- if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0) {
- h5libraryError(env);
- return JNI_FALSE;
- } /* end if */
- if (track_times == 1) {
- return JNI_TRUE;
- } /* end if */
- return JNI_FALSE;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_obj_track_times
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
- (JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
-{
- hbool_t track;
-
- if (track_times == JNI_TRUE) {
- track = 1;
- } /* end if */
- else {
- track = 0;
- } /* end else */
-
- if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_char_encoding
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
- (JNIEnv *env, jclass clss, jlong acpl)
-{
- H5T_cset_t encoding;
-
- if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0)
- h5libraryError(env);
-
- return encoding;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_char_encoding
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
- (JNIEnv *env, jclass clss, jlong acpl, jint encoding)
-{
- if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual
- * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id,
- jstring src_file_name, jstring src_dset_name, jlong src_space_id)
-{
- herr_t retVal = -1;
- const char *fstr;
- const char *dstr;
-
- PIN_JAVA_STRING_TWO(src_file_name, fstr, src_dset_name, dstr);
- if (fstr != NULL && dstr != NULL) {
- retVal = H5Pset_virtual((hid_t)dcpl_id, (hid_t)vspace_id, fstr, dstr, (hid_t)src_space_id);
-
- UNPIN_JAVA_STRING_TWO(src_file_name, fstr, src_dset_name, dstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_count
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
- (JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- size_t s;
-
- if (H5Pget_virtual_count((hid_t)dcpl_id, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_vspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- hid_t space_id = -1;
-
- space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index);
- if (space_id < 0)
- h5libraryError(env);
-
- return (jlong)space_id;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_srcspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- hid_t space_id = -1;
-
- space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index);
- if (space_id < 0)
- h5libraryError(env);
-
- return (jlong)space_id;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_filename
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- char *fname;
- ssize_t buf_size;
- ssize_t status;
- jstring str = NULL;
-
- /* get the length of the filename */
- buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Pget_virtual_filename: buf_size < 0");
- } /* end if */
- else if (buf_size >= 0) {
- buf_size++; /* add extra space for the null terminator */
- fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (fname == NULL) {
- h5outOfMemory( env, "H5Pget_virtual_filename: malloc failed");
- } /* end if */
- else {
- status = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size);
-
- if (status >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR fname);
- HDfree(fname);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_filename: return string not allocated");
- } /* end if */
- else {
- HDfree(fname);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else if */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_dsetname
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- char *dname;
- ssize_t buf_size;
- ssize_t status;
- jstring str = NULL;
-
- /* get the length of the filename */
- buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Pget_virtual_dsetname: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (dname == NULL) {
- h5outOfMemory( env, "H5Pget_virtual_dsetname: malloc failed");
- } /* end if */
- else {
- status = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size);
-
- if (status >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR dname);
- HDfree(dname);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_dsetname: return string not allocated");
- } /* end if */
- else {
- HDfree(dname);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else if */
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_view
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- H5D_vds_view_t virtual_view;
-
- if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0)
- h5libraryError(env);
-
- return (jint)virtual_view;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_view
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
- (JNIEnv *env, jclass clss, jlong dapl_id, jint view)
-{
- if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_printf_gap
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- hsize_t gap_size;
-
- if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0)
- h5libraryError(env);
-
- return (jlong)gap_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */
+} /* end Java_hdf_hdf5lib_H5__1H5Pclose_1class */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_printf_gap
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
- (JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size)
+static herr_t
+H5P_cls_create_cb
+ (hid_t prop_id, void *create_data)
{
- if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */
+ jmethodID mid;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jint status = -1;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy
- * Signature: (J[Z[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
- (JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold)
-{
- herr_t status = -1;
- H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
- jlong *thethresholdArray = NULL;
- jboolean *thepersistArray = NULL;
- jboolean isCopy;
-
- if (persist) {
- thepersistArray = (jboolean*)ENVPTR->GetBooleanArrayElements(ENVPAR persist, &isCopy);
- if (thepersistArray == NULL) {
- h5JNIFatalError(env, "H5Pget_file_space: persist not pinned");
- return -1;
- }
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_create_cb: failed to attach current thread to JVM");
}
- if (threshold) {
- thethresholdArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR threshold, &isCopy);
- if (thethresholdArray == NULL) {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_file_space: threshold not pinned");
- return -1;
- } /* end if */
- } /* end if */
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t*)thepersistArray, (hsize_t*)thethresholdArray);
-
- if (status < 0) {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, JNI_ABORT);
- if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, 0);
- if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, 0);
- } /* end else */
- return (jint)thestrategy;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, create_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_persist
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- herr_t status = -1;
- hbool_t thepersist = FALSE;
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &thepersist, NULL);
-
- if (status < 0)
- h5libraryError(env);
-
- return (jboolean)thepersist;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_threshold
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- herr_t status = -1;
- hsize_t thethreshold;
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &thethreshold);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, create_callback, mid, prop_id, create_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jlong)thethreshold;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_strategy
- * Signature: (JIZJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold)
-{
- if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_page_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
- (JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
-{
- if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
- h5libraryError(env);
-}
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_page_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- hsize_t fsp_size = 0;
- if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
- h5libraryError(env);
- return (jlong)fsp_size;
-}
-
-static herr_t
-H5P_cls_create_cb
- (hid_t prop_id, void *create_data)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I");
- if (mid != 0) {
- /* fprintf(stderr, "JNI H5P_cls_create_func_cb execute\n"); fflush(stderr); */
- status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, prop_id, create_data);
- /* fprintf(stderr, "\nJNI H5P_cls_create_func_cb status: %d\n", status); fflush(stderr); */
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5P_cls_create_cb */
@@ -4991,966 +786,332 @@ static herr_t
H5P_cls_copy_cb
(hid_t new_prop_id, hid_t old_prop_id, void *copy_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, new_prop_id, old_prop_id, copy_data);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_cls_copy_cb */
-
-static herr_t
-H5P_cls_close_cb
- (hid_t prop_id, void *close_data)
-{
- JNIEnv *cbenv;
- jint status = -1;
+ JNIEnv *cbenv = NULL;
jclass cls;
- jmethodID mid;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, prop_id, close_data);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_cls_close_cb */
+ jint status = -1;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_log_options
- * Signature: (JZLjava/lang/String;Z)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
-{
- herr_t retVal = -1;
- const char *lstr;
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_copy_cb: failed to attach current thread to JVM");
+ }
- PIN_JAVA_STRING(location, lstr);
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, copy_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, lstr, (hbool_t)start_on_access);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(location, lstr);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, copy_callback, mid, new_prop_id, old_prop_id, copy_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (retVal < 0) {
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_log_options
- * Signature: (J[Z)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
- (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
-{
- hbool_t is_enabled;
- hbool_t start_on_access;
- jboolean *mdc_log_options_ptr;
- char *lname;
- size_t location_size;
- ssize_t status;
- jstring str = NULL;
- jint size;
- jboolean isCopy;
-
- if (mdc_log_options == NULL) {
- h5nullArgument(env, "H5Fget_mdc_log_options: mdc_log_options is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_log_options);
- if (size < 2) {
- h5badArgument(env, "H5Fget_mdc_log_options: length of mdc_log_options < 2.");
- } /* end if */
- else {
- /* get the length of the filename */
- H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access);
- if (location_size == 0) {
- h5badArgument(env, "H5Pget_mdc_log_options: location_size is 0");
- }/* end if */
- else if (location_size > 0) {
- location_size++; /* add extra space for the null terminator */
- lname = (char *)HDmalloc(sizeof(char) * location_size);
- if (lname == NULL) {
- h5outOfMemory(env, "H5Pget_mdc_log_options: malloc failed");
- } /* end if */
- else {
- status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access);
-
- if (status < 0) {
- HDfree(lname);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lname);
- HDfree(lname);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_mdc_log_options: return string not allocated");
- } /* end if */
- else {
- mdc_log_options_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_log_options, &isCopy);
- mdc_log_options_ptr[0] = (jboolean)is_enabled;
- mdc_log_options_ptr[1] = (jboolean)start_on_access;
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_log_options, mdc_log_options_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if*/
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end if */
+ return (herr_t)status;
+} /* end H5P_cls_copy_cb */
static herr_t
-H5D_append_cb
- (hid_t dataset_id, hsize_t *cur_dims, void *cb_data)
+H5P_cls_close_cb
+ (hid_t prop_id, void *close_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
- jlongArray cur_dimsArray;
- cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I");
- if (mid != 0) {
- if (cur_dims != NULL) {
- cur_dimsArray = CBENVPTR->NewLongArray(CBENVPAR 2);
- if (cur_dimsArray != NULL) {
- CBENVPTR->SetLongArrayRegion(CBENVPAR cur_dimsArray, 0, 2, (const jlong *)cur_dims);
-
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, dataset_id, cur_dims, op_data);
- }
- }
- }
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_close_cb: failed to attach current thread to JVM");
+ }
- return (herr_t)status;
-} /* end H5D_append_cb */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, close_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_append_flush
- * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
- (JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data)
-{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, close_callback, mid, prop_id, close_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (op_data == NULL) {
- h5nullArgument(env, "H5Pset_append_flush: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Pset_append_flush: callback_op is NULL");
- } /* end if */
- else {
- status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t*)boundary, (H5D_append_cb_t)H5D_append_cb, (void*)&wrapper);
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
+ return (herr_t)status;
+} /* end H5P_cls_close_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class_nocb
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
- (JNIEnv *env, jclass clss, jlong parent_class, jstring name)
+static herr_t
+H5P_prp_create_cb
+ (const char *name, size_t size, void *value)
{
- hid_t class_id = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL);
-
- UNPIN_JAVA_STRING(name, cstr);
+ jmethodID mid;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if (class_id < 0)
- h5libraryError(env);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_create_cb: failed to attach current thread to JVM");
}
- return (jlong)class_id;
-} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class
- (JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op,
- jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data)
-{
- hid_t class_id = -1;
- const char *cstr;
- copy_callback = copy_op;
- close_callback = close_op;
- create_callback = create_op;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void*) create_data,
- (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void*) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void*) close_data);
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, create_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (class_id < 0)
- h5libraryError(env);
- }
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jlong)class_id;
-} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class */
+ status = CBENVPTR->CallIntMethod(CBENVONLY, create_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-static herr_t
-H5P_prp_create_cb
- (const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5P_prp_create_cb */
static herr_t
-H5P_prp_copy_cb
- (const char *name, size_t size, void *value)
+H5P_prp_set_cb
+ (hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_copy_cb */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_set_cb: failed to attach current thread to JVM");
+ }
-static herr_t
-H5P_prp_close_cb
- (const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, set_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_close_cb */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-static int
-H5P_prp_compare_cb
- (void *value1, void *value2, size_t size)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, set_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR compare_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "([B[BJ)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR compare_callback, mid, value1, value2, size);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
-} /* end H5P_prp_compare_cb */
+} /* end H5P_prp_set_cb */
static herr_t
H5P_prp_get_cb
(hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR get_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR get_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_get_cb */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_get_cb: failed to attach current thread to JVM");
+ }
-static herr_t
-H5P_prp_set_cb
- (hid_t prop_id, const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, get_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, get_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR set_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR set_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
-} /* end H5P_prp_set_cb */
+} /* end H5P_prp_get_cb */
static herr_t
H5P_prp_delete_cb
(hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR delete_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR delete_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_delete_cb */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pregister2: buf not pinned");
- } /* end if */
- else {
- status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL, NULL);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_delete_cb: failed to attach current thread to JVM");
}
-} /* end Java_hdf_hdf5lib_H5_H5Pregister2_1nocb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
- jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete,
- jobject prp_copy, jobject prp_cmp, jobject prp_close)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
- copy_callback = prp_copy;
- close_callback = prp_close;
- create_callback = prp_create;
- compare_callback = prp_cmp;
- set_callback = prp_set;
- get_callback = prp_get;
- delete_callback = prp_delete;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, delete_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pregister2: buf not pinned");
- } /* end if */
- else {
- status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, (H5P_prp_create_func_t)H5P_prp_create_cb,
- (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
- (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pregister2 */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pinsert2: buf not pinned");
- } /* end if */
- else {
- status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, delete_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
- jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete,
- jobject prp_copy, jobject prp_cmp, jobject prp_close)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
- copy_callback = prp_copy;
- close_callback = prp_close;
- compare_callback = prp_cmp;
- set_callback = prp_set;
- get_callback = prp_get;
- delete_callback = prp_delete;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- UNPIN_JAVA_STRING(name, cstr);
- h5JNIFatalError(env, "H5Pinsert2: buf not pinned");
- } /* end if */
- else {
- status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP,
- (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
- (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
+ return (herr_t)status;
+} /* end H5P_prp_delete_cb */
static herr_t
-H5P_iterate_cb
- (hid_t prop_id, const char *name, void *cb_data)
+H5P_prp_copy_cb
+ (const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
- cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- /* fprintf(stderr, "\nJNI H5P_iterate_cb entered\n"); fflush(stderr); */
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: AttachCurrentThread failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls == 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetObjectClass failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I");
- if (mid == 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetMethodID failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- /* fprintf(stderr, "JNI H5P_iterate_cb execute\n"); fflush(stderr); */
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, prop_id, str, op_data);
- /* fprintf(stderr, "\nJNI H5P_iterate_cb status: %d\n", status); fflush(stderr); */
- } /* end else */
- } /* end else */
- } /* end else */
-
- JVMPTR->DetachCurrentThread(JVMPAR);
- /* fprintf(stderr, "\nJNI H5P_iterate_cb leave\n"); fflush(stderr); */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_copy_cb: failed to attach current thread to JVM");
+ }
- return status;
-} /* end H5P_iterate_cb */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, copy_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Piterate
- * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Piterate
- (JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, jobject op_data)
-{
- herr_t status = -1;
- jint *theArray = NULL;
- jboolean isCopy;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Piterate: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Piterate: callback_op is NULL");
- } /* end else if */
- else {
- if (idx == NULL) {
- status = H5Piterate((hid_t)prop_id, NULL, (H5P_iterate_t)H5P_iterate_cb, (void*)&wrapper);
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR idx, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Piterate: idx not pinned");
- } /* end if */
- else
- status = H5Piterate((hid_t)prop_id, (int*)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void*)&wrapper);
- } /* end else */
-
- if (status < 0) {
- if(idx)
- ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else if (idx)
- ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, 0);
- } /* end else */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Piterate */
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_metadata_read_attempts
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
- (JNIEnv *env, jclass clss, jlong plist_id)
-{
- unsigned attempts;
- if (H5Pget_metadata_read_attempts((hid_t)plist_id, &attempts) < 0)
- h5libraryError(env);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, copy_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jlong) attempts;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_metadata_read_attempts
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
- (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts)
-{
- if (attempts <= 0) {
- h5badArgument(env, "H5Pset_metadata_read_attempts: attempts <= 0");
- } /* end if */
- else {
- if(H5Pset_metadata_read_attempts((hid_t)plist_id, (unsigned)attempts) < 0)
- h5libraryError(env);
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return (herr_t)status;
+} /* end H5P_prp_copy_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+static int
+H5P_prp_compare_cb
+ (void *value1, void *value2, size_t size)
{
- herr_t retVal = -1;
- const char *aName;
-
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_virtual_prefix((hid_t)dapl_id, aName);
-
- UNPIN_JAVA_STRING(prefix, aName);
+ jmethodID mid;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(retVal < 0)
- h5libraryError(env);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_compare_cb: failed to attach current thread to JVM");
}
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_virtual_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)pre, size);
-
- if (prefix_size >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_prefix: return string not allocated");
- } /* end if */
- else {
- HDfree(pre);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_efile_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
-{
- herr_t retVal = -1;
- const char *aName;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, compare_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_efile_prefix((hid_t)dapl_id, aName);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([B[BJ)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(prefix, aName);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, compare_callback, mid, value1, value2, size);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if(retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_efile_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_efile_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)pre, size);
-
- if (prefix_size >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_efile_prefix: return string not allocated");
- } /* end if */
- else {
- HDfree(pre);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
+ return (herr_t)status;
+} /* end H5P_prp_compare_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_evict_on_close
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
+static herr_t
+H5P_prp_close_cb
+ (const char *name, size_t size, void *value)
{
- herr_t retVal = -1;
- hbool_t evict_on_close_val;
+ jmethodID mid;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if (evict_on_close == JNI_TRUE)
- evict_on_close_val = TRUE;
- else
- evict_on_close_val = FALSE;
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_close_cb: failed to attach current thread to JVM");
+ }
- retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val);
- if (retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, close_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_evict_on_close
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- hbool_t evict_on_close_val = FALSE;
- jboolean bval = JNI_FALSE;
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- if (evict_on_close_val == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close */
+ status = CBENVPTR->CallIntMethod(CBENVONLY, close_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_opts
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
- (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts)
-{
- herr_t retVal = -1;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- retVal = H5Pset_chunk_opts((hid_t)dcpl_id, (unsigned)opts);
- if (retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts */
+ return (herr_t)status;
+} /* end H5P_prp_close_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_opts
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
- (JNIEnv *env, jclass clss, jlong dcpl_id)
+static herr_t
+H5P_iterate_cb
+ (hid_t prop_id, const char *name, void *cb_data)
{
- unsigned opts = 0;
-
- if (H5Pget_chunk_opts((hid_t)dcpl_id, opts) < 0)
- h5libraryError(env);
+ cb_wrapper *wrapper = (cb_wrapper *) cb_data;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ void *op_data = (void *) wrapper->op_data;
+ jint status = -1;
- return (jint)opts;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void**)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_iterate_cb: failed to attach current thread to JVM");
+ }
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_dset_no_attrs_hint
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
-(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize)
-{
- herr_t retVal = -1;
- hbool_t minimize_val;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (minimize == JNI_TRUE)
- minimize_val = TRUE;
- else
- minimize_val = FALSE;
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t)minimize_val);
- if (retVal < 0)
- h5libraryError(env);
-}
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_dset_no_attrs_hint
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
-(JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- hbool_t minimize = FALSE;
- jboolean bval = JNI_FALSE;
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, prop_id, str, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t *)&minimize) < 0) {
- h5libraryError(env);
- }
- else {
- if (minimize == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- return bval;
-}
+ return status;
+} /* end H5P_iterate_cb */
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h
index 056c569..8318be4 100644
--- a/java/src/jni/h5pImp.h
+++ b/java/src/jni/h5pImp.h
@@ -11,12 +11,13 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5_H5P */
#ifndef _Included_hdf_hdf5lib_H5_H5P
#define _Included_hdf_hdf5lib_H5_H5P
+#include <jni.h>
+
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
@@ -32,15 +33,6 @@ Java_hdf_hdf5lib_H5__1H5Pcreate
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pclose
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
* Method: H5Pget_class
* Signature: (J)J
*/
@@ -59,570 +51,74 @@ Java_hdf_hdf5lib_H5__1H5Pcopy
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_userblock
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1userblock
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_userblock
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1userblock
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sizes
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sizes
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sizes
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sizes
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sym_k
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sym_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_istore_k
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_istore_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_layout
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1layout
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_layout
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1layout
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk
- * Signature: (JI[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk
-(JNIEnv *, jclass, jlong, jint, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk
- * Signature: (JI[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk
-(JNIEnv *, jclass, jlong, jint, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alignment
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alignment
-(JNIEnv *, jclass, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alignment
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alignment
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_external
- * Signature: (JLjava/lang/String;JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1external
-(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external_count
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external_1count
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external
- * Signature: (JIJ[Ljava/lang/String;[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external
-(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
-(JNIEnv *, jclass, jlong, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
-(JNIEnv *, jclass, jlong, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1filter
-(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nfilters
+ * Method: H5Pclose
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nfilters
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_driver
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1driver
+Java_hdf_hdf5lib_H5__1H5Pclose
(JNIEnv *, jclass, jlong);
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_cache
- * Signature: (JIJJD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1cache
-(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_cache
- * Signature: (J[I[J[J[D)I
+ * TODO: H5Pencode
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1cache
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray);
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer
- * Signature: (JJ[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer
-(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer
- * Signature: (J[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer
-(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer_size
- * Signature: (JJ)V
+ * TODO: H5Pdecode
*/
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
-(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_preserve
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1preserve
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_preserve
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1preserve
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_deflate
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1deflate
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_gc_references
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_gc_references
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_btree_ratios
- * Signature: (JDDD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
-(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_btree_ratios
- * Signature: (J[D[D[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
-(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_small_data_block_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
-(JNIEnv *, jclass, jlong, jlong);
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class
+ (JNIEnv*, jclass, jlong, jstring, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_small_data_block_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class_nocb
+ * Signature: (JLjava/lang/String;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alloc_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alloc_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pfill_value_defined
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fletcher32
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_edc_check
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_edc_check
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shuffle
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shuffle
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_szip
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1szip
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_hyper_vector_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_hyper_vector_size
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pall_filters_avail
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pmodify_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pmodify_1filter
-(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fclose_degree
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fclose_degree
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_family
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
-(JNIEnv *, jclass, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_family
- * Signature: (J[J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
-(JNIEnv *, jclass, jlong, jlongArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_core
- * Signature: (JJZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
-(JNIEnv *, jclass, jlong, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_core
- * Signature: (J[J[Z)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
-(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray);
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
+ (JNIEnv*, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_family_offset
- * Signature: (JJ)I
+ * Method: H5Pregister2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
-(JNIEnv *, jclass, jlong, jlong);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_family_offset
- * Signature: (J)J
+ * Method: H5Pregister2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
-(JNIEnv *, jclass, jlong);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_log
- * Signature: (JLjava/lang/String;JJ)V
+ * Method: H5Pinsert2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
-(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+Java_hdf_hdf5lib_H5_H5Pinsert2
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Premove_filter
- * Signature: (JI)I
+ * Method: H5Pinsert2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5P1remove_1filter
-(JNIEnv *, jclass, jlong, jint);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
@@ -707,6 +203,15 @@ Java_hdf_hdf5lib_H5_H5Pequal
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Piterate
+ * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Piterate
+ (JNIEnv*, jclass, jlong, jintArray, jobject, jobject);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: H5Pcopy_prop
* Signature: (JJLjava/lang/String;)I
*/
@@ -741,889 +246,6 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Pclose_1class
(JNIEnv *, jclass, jlong);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter2
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nlinks
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nlinks
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nlinks
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nlinks
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_libver_bounds
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_libver_bounds
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_copy_object
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_copy_object
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_create_intermediate_group
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_create_intermediate_group
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_data_transform
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_data_transform
- * Signature: (J[Ljava/lang/String;J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
-(JNIEnv *, jclass, jlong, jobjectArray, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_acc_flags
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_acc_flags
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_phase_change
- * Signature: (JII)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_nindexes
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_nindexes
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_index
- * Signature: (JIII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
-(JNIEnv *, jclass, jlong, jint, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_index
- * Signature: (JI[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
-(JNIEnv *, jclass, jlong, jint, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_local_heap_size_hint
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_local_heap_size_hint
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nbit
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nbit
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_scaleoffset
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_est_link_info
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_est_link_info
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_fapl
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pget_elink_fapl
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_prefix
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_prefix
- * Signature: (J[Ljava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
-(JNIEnv *, jclass, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_direct
- * Signature: (JJJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
-(JNIEnv *, jclass, jlong, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_direct
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_sec2
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_stdio
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_windows
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_split
- * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
-(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_meta_block_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_meta_block_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sieve_buf_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sieve_buf_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_file_cache_size
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_file_cache_size
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
-(JNIEnv *, jclass, jlong);
-
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_config
- * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
- */
-JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_config
- * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
-(JNIEnv *, jclass, jlong, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_cache
- * Signature: (JJJD)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
-(JNIEnv *, jclass, jlong, jlong, jlong, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_cache
- * Signature: (J[J[J[D)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
-(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_obj_track_times
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_obj_track_times
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_char_encoding
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_char_encoding
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual
- * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual
-(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_count
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_vspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_srcspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_filename
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_dsetname
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_view
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_view
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_printf_gap
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_printf_gap
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy
- * Signature: (J[Z[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
-(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_persist
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_threshold
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_strategy
- * Signature: (JIZJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
-(JNIEnv *, jclass, jlong, jint, jboolean, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_page_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_page_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_log_options
- * Signature: (JZLjava/lang/String;Z)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
-(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_log_options
- * Signature: (J[Z)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
-(JNIEnv *, jclass, jlong, jbooleanArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_append_flush
- * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
- (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class_nocb
- * Signature: (JLjava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
- (JNIEnv*, jclass, jlong, jstring);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class
- (JNIEnv*, jclass, jlong, jstring, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Piterate
- * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Piterate
- (JNIEnv*, jclass, jlong, jintArray, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_metadata_read_attempts
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_metadata_read_attempts
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_efile_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_efile_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_evict_on_close
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_evict_on_close
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_opts
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_opts
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_dset_no_attrs_hint
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
- (JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_dset_no_attrs_hint
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
- (JNIEnv *, jclass, jlong);
-
-
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c
new file mode 100644
index 0000000..f2cb80a
--- /dev/null
+++ b/java/src/jni/h5pLAPLImp.c
@@ -0,0 +1,240 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pLAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nlinks
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nlinks
+ (JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (nlinks <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_nlinks: nlinks <= 0");
+
+ if ((retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nlinks
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nlinks
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ size_t nlinks = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong) nlinks;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */
+
+/*
+ * TODO: H5Pset_elink_cb
+ */
+
+/*
+ * TODO: H5Pget_elink_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_prefix
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
+ (JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix)
+{
+ const char *linkPrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == prefix)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_elink_prefix: prefix is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, prefix, linkPrefix, NULL, "H5Pset_elink_prefix: link prefix not pinned");
+
+ if ((retVal = H5Pset_elink_prefix((hid_t)lapl_id, linkPrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkPrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, linkPrefix);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_prefix
+ * Signature: (J[Ljava/lang/String;)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
+ (JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix)
+{
+ ssize_t prefix_size = -1;
+ size_t size = 0;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == prefix)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_elink_prefix: prefix is NULL");
+
+ if ((prefix_size = H5Pget_elink_prefix((hid_t)lapl_id, (char *)NULL, size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed");
+
+ if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t) prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, prefix, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jlong)prefix_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_fapl
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
+ (JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: _H5Pget_elink_fapl
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_elink_fapl((hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)retVal;
+} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_acc_flags
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
+ (JNIEnv *env, jclass clss, jlong lapl_id, jint flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint) retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_acc_flags
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ unsigned flags;
+
+ UNUSED(clss);
+
+ if (H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLAPLImp.h b/java/src/jni/h5pLAPLImp.h
new file mode 100644
index 0000000..8efcfb5
--- /dev/null
+++ b/java/src/jni/h5pLAPLImp.h
@@ -0,0 +1,107 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PLAPL
+#define _Included_hdf_hdf5lib_H5_H5PLAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nlinks
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nlinks
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nlinks
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nlinks
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_elink_cb
+ */
+
+/*
+ * TODO: H5Pget_elink_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_prefix
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_prefix
+ * Signature: (J[Ljava/lang/String;)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
+(JNIEnv *, jclass, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_fapl
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: _H5Pget_elink_fapl
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_acc_flags
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_acc_flags
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PLAPL */
diff --git a/java/src/jni/h5pLCPLImp.c b/java/src/jni/h5pLCPLImp.c
new file mode 100644
index 0000000..7c79796
--- /dev/null
+++ b/java/src/jni/h5pLCPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pLCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLCPLImp.h b/java/src/jni/h5pLCPLImp.h
new file mode 100644
index 0000000..009d1b4
--- /dev/null
+++ b/java/src/jni/h5pLCPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PLCPL
+#define _Included_hdf_hdf5lib_H5_H5PLCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PLCPL */
diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c
new file mode 100644
index 0000000..241842e
--- /dev/null
+++ b/java/src/jni/h5pOCPLImp.c
@@ -0,0 +1,211 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pOCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_create_intermediate_group
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
+ (JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_create_intermediate_group
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
+ (JNIEnv *env, jclass clss, jlong lcpl_id)
+{
+ unsigned crt_intermed_group = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jboolean)crt_intermed_group;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_obj_track_times
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
+ (JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
+{
+ hbool_t track = FALSE;
+
+ UNUSED(clss);
+
+ track = (JNI_TRUE == track_times) ? 1 : 0;
+
+ if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_obj_track_times
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
+ (JNIEnv *env, jclass clss, jlong objplid)
+{
+ hbool_t track_times = FALSE;
+ jboolean retVal = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ retVal = (track_times == TRUE) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_phase_change
+ * Signature: (JII)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == attributes)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_attr_phase_change: attributes is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, attributes, theArray, &isCopy, "H5Pget_attr_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, attributes, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
+ (JNIEnv *env, jclass clss, jlong ocpl_id)
+{
+ unsigned crt_order_flags = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)crt_order_flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pOCPLImp.h b/java/src/jni/h5pOCPLImp.h
new file mode 100644
index 0000000..fe01f06
--- /dev/null
+++ b/java/src/jni/h5pOCPLImp.h
@@ -0,0 +1,99 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5POCPL
+#define _Included_hdf_hdf5lib_H5_H5POCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_create_intermediate_group
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_create_intermediate_group
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_obj_track_times
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_obj_track_times
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_phase_change
+ * Signature: (JII)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5POCPL */
diff --git a/java/src/jni/h5pOCpyPLImp.c b/java/src/jni/h5pOCpyPLImp.c
new file mode 100644
index 0000000..9481f91
--- /dev/null
+++ b/java/src/jni/h5pOCpyPLImp.c
@@ -0,0 +1,92 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pOCpyPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_copy_object
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
+ (JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_copy_object
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
+ (JNIEnv *env, jclass clss, jlong ocp_plist_id)
+{
+ unsigned copy_options = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_copy_object((hid_t)ocp_plist_id, &copy_options) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)copy_options;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */
+
+/*
+ * TODO: H5Padd_merge_committed_dtype_path
+ */
+
+/*
+ * TODO: H5Pfree_merge_committed_dtype_paths
+ */
+
+/*
+ * TODO: H5Pset_mcdt_search_cb
+ */
+
+/*
+ * TODO: H5Pget_mcdt_search_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pOCpyPLImp.h b/java/src/jni/h5pOCpyPLImp.h
new file mode 100644
index 0000000..f1dca58
--- /dev/null
+++ b/java/src/jni/h5pOCpyPLImp.h
@@ -0,0 +1,61 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5POCpyPL
+#define _Included_hdf_hdf5lib_H5_H5POCpyPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_copy_object
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_copy_object
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Padd_merge_committed_dtype_path
+ */
+
+/*
+ * TODO: H5Pfree_merge_committed_dtype_paths
+ */
+
+/*
+ * TODO: H5Pset_mcdt_search_cb
+ */
+
+/*
+ * TODO: H5Pget_mcdt_search_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5POCpyPL */
diff --git a/java/src/jni/h5pStrCPLImp.c b/java/src/jni/h5pStrCPLImp.c
new file mode 100644
index 0000000..e69847d
--- /dev/null
+++ b/java/src/jni/h5pStrCPLImp.c
@@ -0,0 +1,74 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pStrCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_char_encoding
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
+ (JNIEnv *env, jclass clss, jlong acpl, jint encoding)
+{
+ UNUSED(clss);
+
+ if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_char_encoding
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
+ (JNIEnv *env, jclass clss, jlong acpl)
+{
+ H5T_cset_t encoding = H5T_CSET_ERROR;
+
+ UNUSED(clss);
+
+ if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return encoding;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pStrCPLImp.h b/java/src/jni/h5pStrCPLImp.h
new file mode 100644
index 0000000..6e140d3
--- /dev/null
+++ b/java/src/jni/h5pStrCPLImp.h
@@ -0,0 +1,45 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PStrCPL
+#define _Included_hdf_hdf5lib_H5_H5PStrCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_char_encoding
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_char_encoding
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PStrCPL */
diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c
index d551120..90d78fe 100644
--- a/java/src/jni/h5plImp.c
+++ b/java/src/jni/h5plImp.c
@@ -26,7 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5plImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -37,9 +40,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLset_1loading_1state
(JNIEnv *env, jclass clss, jint plugin_flags)
{
- if (H5PLset_loading_state((unsigned int)plugin_flags) < 0) {
- h5libraryError(env);
- }
+ UNUSED(clss);
+
+ if (H5PLset_loading_state((unsigned int)plugin_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5PLset_1loading_1state */
/*
@@ -52,9 +59,13 @@ Java_hdf_hdf5lib_H5_H5PLget_1loading_1state
(JNIEnv *env, jclass clss)
{
unsigned int plugin_type = 0;
- if (H5PLget_loading_state(&plugin_type) < 0) {
- h5libraryError(env);
- }
+
+ UNUSED(clss);
+
+ if (H5PLget_loading_state(&plugin_type) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)plugin_type;
} /* end Java_hdf_hdf5lib_H5_H5PLget_1loading_1state */
@@ -67,18 +78,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLappend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLappend(aName);
+ if (NULL == plugin_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLappend: new path is NULL");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLappend: new path not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5PLappend(newPath)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLappend */
/*
* Class: hdf_hdf5lib_H5
@@ -89,18 +104,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLprepend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLprepend(aName);
+ if (NULL == plugin_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLprepend: new path is NULL");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLprepend: new path not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5PLprepend(newPath)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLprepend */
/*
@@ -112,18 +131,25 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLreplace
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLreplace(aName, index);
+ if (NULL == plugin_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: new path is NULL");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: index < 0");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLreplace: new path not pinned");
+
+ if ((retVal = H5PLreplace(newPath, (unsigned) index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLreplace */
/*
@@ -135,18 +161,25 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLinsert
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLinsert(aName, index);
+ if (NULL == plugin_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: new path is NULL");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: index < 0");
- if (retVal < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLinsert: new path not pinned");
+
+ if ((retVal = H5PLinsert(newPath, (unsigned) index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLinsert */
/*
@@ -158,8 +191,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLremove
(JNIEnv *env, jclass clss, jint index)
{
- if (H5PLremove(index) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLremove: index < 0");
+
+ if (H5PLremove((unsigned) index) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5PLremove */
/*
@@ -171,33 +212,33 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5PLget
(JNIEnv *env, jclass clss, jint index)
{
- char *aName;
jstring str = NULL;
ssize_t buf_size;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLget: index < 0");
+
+ /* Get the length of the name */
+ if ((buf_size = H5PLget((unsigned) index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer");
+
+ if ((H5PLget((unsigned) index, aName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
- /* get the length of the name */
- buf_size = H5PLget(index, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5PLget: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5PLget: malloc failed");
- } /* end if */
- else {
- buf_size = H5PLget(index, aName, (size_t)buf_size);
- if (buf_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- }
- HDfree(aName);
- }
- }
return str;
} /* end Java_hdf_hdf5lib_H5_H5PLget */
@@ -211,9 +252,13 @@ Java_hdf_hdf5lib_H5_H5PLsize
(JNIEnv *env, jclass clss)
{
unsigned int listsize = 0;
- if (H5PLsize(&listsize) < 0) {
- h5libraryError(env);
- }
+
+ UNUSED(clss);
+
+ if (H5PLsize(&listsize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)listsize;
} /* end Java_hdf_hdf5lib_H5_H5PLsize */
diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c
index 5f2b86d..1a77fd3 100644
--- a/java/src/jni/h5rImp.c
+++ b/java/src/jni/h5rImp.c
@@ -26,8 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5rImp.h"
-extern JavaVM *jvm;
-
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -38,47 +40,44 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate
(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, jint ref_type, jlong space_id)
{
- const char *rName;
- herr_t status = -1;
- jbyte *refP;
- jboolean isCopy2;
-
- PIN_JAVA_STRING(name, rName);
- if (rName != NULL) {
- if (ref == NULL) {
- h5nullArgument( env, "H5Rcreate: ref is NULL");
- } /* end if */
- else {
- if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rcreate: ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end if */
- else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rcreate: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else if ((ref_type != H5R_OBJECT) && (ref_type != H5R_DATASET_REGION)) {
- h5badArgument( env, "H5Rcreate: ref_type unknown type ");
- } /* end else if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy2);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rcreate: ref not pinned");
- } /* end if */
- else {
- status = H5Rcreate(refP, (hid_t)loc_id, rName, (H5R_type_t)ref_type, (hid_t)space_id);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, rName);
+ const char *refName = NULL;
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: name is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: ref array length < 0");
}
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type");
+
+ PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate: reference name not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rcreate: reference buffer not pinned");
+
+ if ((status = H5Rcreate(refBuf, (hid_t)loc_id, refName, (H5R_type_t)ref_type, (hid_t)space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0);
+ if (refName)
+ UNPIN_JAVA_STRING(ENVONLY, name, refName);
+
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate */
@@ -91,33 +90,36 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rdereference
(JNIEnv *env, jclass clss, jlong dataset, jlong access_list, jint ref_type, jbyteArray ref)
{
- jboolean isCopy;
- jbyte *refP;
- hid_t retVal = -1;
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rdereference: ref is NULL");
- } /* end if */
- else if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rdereference: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end else if */
- else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rdereference: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rderefernce: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: ref array length < 0");
+ }
+
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rderefernce: reference buffer not pinned");
+
+ if ((retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rdereference */
@@ -131,33 +133,34 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rget_1region
(JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref)
{
- hid_t retVal = -1;
- jboolean isCopy;
- jbyte *refP;
-
- if (ref_type != H5R_DATASET_REGION) {
- h5badArgument( env, "H5Rget_region: bad ref_type ");
- } /* end if */
- else if (ref == NULL) {
- h5nullArgument( env, "H5Rget_region: ref is NULL");
- } /* end if */
- else if ( ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rget_region: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_region: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (H5R_DATASET_REGION != ref_type)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: bad reference type");
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: ref array length < 0");
+ }
+
+ if (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_region: reference buffer not pinned");
+
+ if ((retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rget_1region */
@@ -171,31 +174,27 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref)
{
- int retVal =-1;
- jboolean isCopy;
- jbyte *refP;
- H5O_type_t object_info;
-
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref is NULL");
- } /* end if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, &object_info);
- if(retVal >= 0)
- retVal = object_info;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ H5O_type_t object_info;
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
+
+ if ((retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, &object_info)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (retVal >= 0)
+ retVal = object_info;
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type */
@@ -209,46 +208,33 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jintArray ref_obj)
{
+ jboolean isCopy, isCopy2;
+ jbyte *refBuf = NULL;
+ jint *ref_objP = NULL;
+ jint status = -1;
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
+ if (NULL == ref_obj)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference object is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
- jint status;
- jboolean isCopy;
- jbyte *refP;
- jint *ref_objP;
- int retVal = -1;
-
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref is NULL");
- } /* end if */
- else if (ref_obj == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref_obj is NULL");
- } /* end else if */
- else {
- refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
- } /* end if */
- else {
- ref_objP = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ref_obj, &isCopy);
- if (ref_objP == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref,refP,0);
- h5JNIFatalError(env, "H5Rget_object_type: ref_obj not pinned");
- } /* end if */
- else {
- status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, (H5O_type_t*)ref_objP);
- retVal = ref_objP[0];
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj,ref_objP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj, ref_objP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ PIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, &isCopy2, "H5Rget_obj_type: reference object array not pinned");
+
+ if ((status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, (H5O_type_t *)ref_objP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ retVal = ref_objP[0];
+
+done:
+ if (ref_objP)
+ UNPIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, (status < 0) ? JNI_ABORT : 0);
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 */
@@ -262,57 +248,52 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jobjectArray name, jlong size)
{
- jlong ret_val = -1;
- jbyte *refP;
- jboolean isCopy;
- char *aName = NULL;
- jstring str;
- size_t bs;
-
- bs = (size_t)size;
- if (bs <= 0) {
- h5badArgument(env, "H5Rget_name: size <= 0");
- } /* end if */
- else if (ref == NULL) {
- h5nullArgument(env, "H5Rget_name: ref is NULL");
- } /* end else if */
- else {
- if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument(env, "H5Rget_name: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end if */
- else if ((ref_type == H5R_DATASET_REGION)
- && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument(env, "H5Rget_name: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else {
- refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_name: ref not pinned");
- } /* end if */
- else {
- aName = (char*)HDmalloc(sizeof(char)*bs);
- if (aName == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- h5outOfMemory(env, "H5Rget_name: malloc failed");
- } /* end if */
- else {
- ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refP, aName, bs) ;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- if (ret_val < 0) {
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
-
- HDfree(aName);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str;
+ jsize refBufLen;
+ jbyte *refBuf = NULL;
+ char *aName = NULL;
+ jlong ret_val = -1;
+
+ UNUSED(clss);
+
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: size <= 0");
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: ref array length < 0");
+ }
+
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");
+
+ if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[(size_t)size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize) 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name */
diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c
index 65cdd7b..eedd42e 100644
--- a/java/src/jni/h5sImp.c
+++ b/java/src/jni/h5sImp.c
@@ -26,7 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5sImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -37,12 +40,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Screate
(JNIEnv *env, jclass clss, jint type)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Screate((H5S_class_t) type);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Screate((H5S_class_t) type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Screate */
@@ -55,98 +60,83 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Screate_1simple
(JNIEnv *env, jclass clss, jint rank, jlongArray dims, jlongArray maxdims)
{
- hid_t retVal = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa = NULL;
- hsize_t *msa = NULL;
- int i;
- int drank, mrank;
- hsize_t *lp;
- jlong *jlp;
-
- if (rank < 0) {
- h5badArgument(env, "H5Screate_simple: rank is invalid");
- } /* end if */
- else if (dims == NULL) {
- h5nullArgument(env, "H5Screate_simple: dims is NULL");
- } /* end else if */
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ hsize_t *lp = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ jlong *jlp = NULL;
+ jsize drank = 0, mrank = 0;
+ int i;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (rank < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: rank is invalid");
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims is NULL");
+
+ if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims array length < 0");
+ }
+
+ if (drank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims rank is invalid");
+
+ if (NULL != maxdims) {
+ if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims array length < 0");
+ }
+
+ if (mrank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims rank is invalid");
+ }
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned");
+
+ if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer")
+
+ jlp = (jlong *) dimsP;
+ for (i = 0; i < rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
+ } /* end for */
+
+ if (NULL == maxdims) {
+ maxdimsP = NULL;
+ msa = (hsize_t *)maxdimsP;
+ }
else {
- drank = (int)ENVPTR->GetArrayLength(ENVPAR dims);
- if (drank != rank) {
- h5badArgument(env, "H5Screate_simple: dims rank is invalid");
- return -1;
- } /* end if */
- if (maxdims != NULL) {
- mrank = (int)ENVPTR->GetArrayLength(ENVPAR maxdims);
- if (mrank != rank) {
- h5badArgument(env, "H5Screate_simple: maxdims rank is invalid");
- return -1;
- } /* end if */
- } /* end if */
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Screate_simple: dims not pinned");
- return -1;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned");
- sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Screate_simple: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer")
- jlp = (jlong *) dimsP;
- for (i = 0; i < rank; i++) {
+ jlp = (jlong *) maxdimsP;
+ for (i = 0; i < mrank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
+ }
- if (maxdims == NULL) {
- maxdimsP = NULL;
- msa = (hsize_t *)maxdimsP;
- } /* end if */
- else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Screate_simple: maxdims not pinned");
- return -1;
- } /* end if */
- msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Screate_simple: dims not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *)maxdimsP;
- for (i = 0; i < mrank; i++) {
- *lp = (hsize_t)*jlp;
- lp++;
- jlp++;
- } /* end for */
- } /* end else */
-
- retVal = H5Screate_simple(rank, (const hsize_t *)sa, (const hsize_t *)msa);
-
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- if (msa)
- HDfree(msa);
- } /* end if */
+ if ((retVal = H5Screate_simple(rank, (const hsize_t *)sa, (const hsize_t *)msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- if (sa)
- HDfree(sa);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
+done:
+ if (msa)
+ HDfree(msa);
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Screate_1simple */
@@ -160,12 +150,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Scopy
(JNIEnv *env, jclass clss, jlong space_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Scopy(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Scopy(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Scopy */
@@ -185,41 +177,37 @@ Java_hdf_hdf5lib_H5__1H5Scopy
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1elements
- (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coord)
+ (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coords)
{
- herr_t status = -1;
- jint i;
- jlong *P;
- jboolean isCopy;
- hssize_t *sa;
- int rank;
-
- if (coord == NULL) {
- h5nullArgument( env, "H5Sselect_elements: coord is NULL");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hssize_t *sa = NULL;
+ jlong *P = NULL;
+ jint i;
+ int rank;
+ herr_t status = FAIL;
- P = ENVPTR->GetLongArrayElements(ENVPAR env,coord,&isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Sselect_elements: coord not pinned");
- return -1;
- } /* end if */
- sa = (hssize_t *)HDmalloc( (size_t)num_elems * 2 * sizeof(hssize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR env,coord,P,JNI_ABORT);
- h5JNIFatalError(env, "H5Sselect_elements: coord array not converted to hssize_t");
- return -1;
- } /* end if */
- for (i= 0; i < (num_elsms * 2); i++) {
+ UNUSED(clss);
+
+ if (NULL == coords)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned");
+
+ if (NULL == (sa = (hssize_t *) HDmalloc( (size_t)num_elemn * 2 * sizeof(hssize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
+
+ for (i = 0; i < (num_elemn * 2); i++) {
sa[i] = P[i];
} /* end for */
- status = H5Sselect_elements (space_id, (H5S_seloper_t)op, num_elemn, (const hssize_t **)&sa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR env, coord, P, JNI_ABORT);
- HDfree(sa);
+ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, num_elemn, (const hssize_t **)&sa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
+done:
+ if (sa)
+ HDfree(sa);
+ if (P)
+ UNPIN_LONG_ARRAY(ENVONLY, coords, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */
@@ -232,49 +220,51 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1elements
- (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coord)
+ (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coords)
{
- int ii;
- hsize_t *lp = NULL;
- hsize_t *llp;
- jlong *jlp;
- herr_t status = -1;
- jbyte *P;
- jboolean isCopy;
- jsize size;
- int nlongs;
-
- if (coord == NULL) {
- h5nullArgument(env, "H5Sselect_elements: coord is NULL");
- } /* end if */
- else {
- P = ENVPTR->GetByteArrayElements(ENVPAR coord, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Sselect_elements: coord not pinned");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR coord);
- nlongs = (int)((size_t)size / sizeof(jlong));
- lp = (hsize_t *)HDmalloc((size_t)nlongs * sizeof(hsize_t));
- jlp = (jlong *) P;
- llp = lp;
- for (ii = 0; ii < nlongs; ii++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end for */
-
- status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR coord, P, JNI_ABORT);
-
- if (llp)
- HDfree(llp);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *lp = NULL;
+ hsize_t *llp = NULL;
+ jlong *jlp = NULL;
+ jbyte *P = NULL;
+ jsize size;
+ int ii;
+ int nlongs;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == coords)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned");
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, coords)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords array length < 0");
+ }
+
+ nlongs = (int)((size_t)size / sizeof(jlong));
+
+ if (NULL == (lp = (hsize_t *) HDmalloc((size_t)nlongs * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
+
+ jlp = (jlong *) P;
+ llp = lp;
+ for (ii = 0; ii < nlongs; ii++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
+ } /* end for */
+
+ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (llp)
+ HDfree(llp);
+ if (P)
+ UNPIN_BYTE_ARRAY(ENVONLY, coords, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */
@@ -288,12 +278,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1all
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sselect_all(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sselect_all(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1all */
@@ -306,12 +298,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1none
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Sselect_none(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sselect_none(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1none */
@@ -326,12 +320,14 @@ Java_hdf_hdf5lib_H5_H5Sselect_1valid
{
htri_t bval = JNI_FALSE;
- bval = H5Sselect_valid(space_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Sselect_valid(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1valid */
@@ -344,11 +340,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints
(JNIEnv *env, jclass clss, jlong space_id)
{
- hssize_t retVal = H5Sget_simple_extent_npoints(space_id);
+ hssize_t retVal = -1;
+
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sget_simple_extent_npoints(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints */
@@ -361,11 +360,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints
(JNIEnv *env, jclass clss, jlong space_id)
{
- hssize_t retVal = H5Sget_select_npoints(space_id);
+ hssize_t retVal = -1;
+
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sget_select_npoints(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints */
@@ -380,10 +382,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1type
{
int retVal = -1;
- retVal = H5Sget_select_type(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5S_SEL_ERROR == (retVal = H5Sget_select_type(space_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1type */
@@ -398,10 +402,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims
{
int retVal = -1;
- retVal = H5Sget_simple_extent_ndims(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims */
@@ -414,100 +420,78 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims
(JNIEnv *env, jclass clss, jlong space_id, jlongArray dims, jlongArray maxdims)
{
- int status = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa;
- hsize_t *msa;
- int i;
- int rank = -1;
- int mrank;
-
- if (dims == NULL) {
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ int i;
+ int rank = -1;
+ int mrank;
+ int status = -1;
+
+ UNUSED(clss);
+
+ if (NULL == dims) {
dimsP = NULL;
sa = (hsize_t *) dimsP;
- } /* end if */
+ }
else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Pget_simple_extent_dims: dims not pinned");
- return -1;
- } /* end if */
- rank = (int)ENVPTR->GetArrayLength(ENVPAR dims);
- sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: dims not converted to hsize_t");
- return -1;
- } /* end if */
- } /* end else */
- if (maxdims == NULL) {
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sget_simple_extent_dims: dims not pinned");
+
+ if ((rank = (int)ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: dims array length < 0");
+ }
+
+ if (NULL == (sa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer");
+ }
+
+ if (NULL == maxdims) {
maxdimsP = NULL;
msa = (hsize_t *) maxdimsP;
- } /* end if */
+ }
else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_simple_extent_dims: maxdims not pinned");
- return -1;
- } /* end if */
- mrank = (int) ENVPTR->GetArrayLength(ENVPAR maxdims);
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sget_simple_extent_dims: maxdims not pinned");
+
+ if ((mrank = (int) ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims array length < 0");
+ }
+
if (rank < 0)
rank = mrank;
- else if (mrank != rank) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: maxdims rank not same as dims");
- return -1;
- } /* end else if */
- msa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: maxdims not converted to hsize_t");
- return -1;
- } /* end if */
- } /* end else */
+ else if (mrank != rank)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims");
- status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa);
+ if (NULL == (msa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer");
+ }
- if (status < 0) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(msa);
- } /* end if */
- h5libraryError(env);
- return -1;
- } /* end if */
+ if ((status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (dimsP != NULL) {
+ if (NULL != dimsP) {
for (i = 0; i < rank; i++) {
dimsP[i] = (jlong)sa[i];
} /* end for */
- HDfree(sa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
- } /* end if */
- if (maxdimsP != NULL) {
+ }
+
+ if (NULL != maxdimsP) {
for (i = 0; i < rank; i++) {
maxdimsP[i] = (jlong)msa[i];
} /* end for */
+ }
+
+done:
+ if (msa)
HDfree(msa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, 0);
- } /* end if */
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, (status < 0) ? JNI_ABORT : 0);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims */
@@ -523,11 +507,15 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type
{
H5S_class_t retVal = H5S_NO_CLASS;
+ UNUSED(clss);
+
if (space_id < 0)
- h5libraryError(env);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_type: space_id < 0");
- retVal = H5Sget_simple_extent_type(space_id);
+ if (H5S_NO_CLASS == (retVal = H5Sget_simple_extent_type(space_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type */
@@ -540,87 +528,81 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple
(JNIEnv *env, jclass clss, jlong space_id, jint rank, jlongArray dims, jlongArray maxdims)
{
- herr_t status = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa;
- hsize_t *msa;
- int i;
- int drank, mrank;
- hsize_t *lp;
- jlong *jlp;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Sset_simple_extent: dims is NULL");
- return -1;
- } /* end if */
- drank = (int) ENVPTR->GetArrayLength(ENVPAR dims);
- if (drank != rank) {
- h5badArgument(env, "H5Screate_simple: dims rank is invalid");
- return -1;
- } /* end if */
- if (maxdims != NULL) {
- mrank = (int) ENVPTR->GetArrayLength(ENVPAR maxdims);
- if (mrank != rank) {
- h5badArgument(env, "H5Screate_simple: maxdims rank is invalid");
- return -1;
- } /* end if */
- } /* end if */
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Pset_simple_extent: dims not pinned");
- return -1;
- } /* end if */
- sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sset_simple_extent: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ hsize_t *lp = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ jlong *jlp = NULL;
+ jsize drank, mrank;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims is NULL");
+
+ if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims array length < 0");
+ }
+
+ if (drank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims rank is invalid");
+
+ if (NULL != maxdims) {
+ if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims array length < 0");
+ }
+
+ if (mrank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims rank is invalid");
+ }
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned");
+
+ if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer");
+
jlp = (jlong *) dimsP;
for (i = 0; i < rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
- if (maxdims == NULL) {
+
+ if (NULL == maxdims) {
maxdimsP = NULL;
msa = (hsize_t *) maxdimsP;
- } /* end if */
+ }
else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pset_simple_extent: maxdims not pinned");
- return -1;
- } /* end if */
- msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Sset_simple_extent: maxdims not converted to hsize_t");
- return -1;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned");
+
+ if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer");
+
jlp = (jlong *) maxdimsP;
for (i = 0; i < rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
- } /* end else */
+ }
- status = H5Sset_extent_simple(space_id, rank, (hsize_t *) sa, (hsize_t *) msa);
+ if ((status = H5Sset_extent_simple(space_id, rank, (hsize_t *) sa, (hsize_t *) msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
+done:
+ if (msa)
HDfree(msa);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple */
@@ -636,12 +618,14 @@ Java_hdf_hdf5lib_H5_H5Sis_1simple
{
htri_t bval = JNI_FALSE;
- bval = H5Sis_simple(space_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Sis_simple(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sis_1simple */
@@ -654,49 +638,50 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Soffset_1simple
(JNIEnv *env, jclass clss, jlong space_id, jbyteArray offset)
{
- herr_t status;
- jbyte *P = NULL;
jboolean isCopy;
- hssize_t *sa;
+ hssize_t *sa = NULL;
+ hssize_t *lp = NULL;
size_t rank;
- size_t i;
- hssize_t *lp;
- jlong *jlp;
-
- if (offset != NULL) {
- P = ENVPTR->GetByteArrayElements(ENVPAR offset, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Soffset_simple: offset not pinned");
- return -1;
- } /* end if */
- i = (size_t)ENVPTR->GetArrayLength(ENVPAR offset);
- rank = i / sizeof(jlong);
- sa = lp = (hssize_t *)HDmalloc((size_t)rank * sizeof(hssize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR offset, P, JNI_ABORT);
- h5JNIFatalError(env, "H5Soffset_simple: offset not converted to hssize_t");
- return -1;
- } /* end if */
+ jsize i;
+ jbyte *P = NULL;
+ jlong *jlp = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL != offset) {
+ PIN_BYTE_ARRAY(ENVONLY, offset, P, &isCopy, "H5Soffset_simple: offset not pinned");
+
+ if ((i = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Soffset_simple: offset array length < 0");
+ }
+
+ rank = (size_t) i / sizeof(jlong);
+
+ if (NULL == (sa = lp = (hssize_t *) HDmalloc((size_t)rank * sizeof(hssize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer");
+
jlp = (jlong *) P;
- for (i = 0; i < rank; i++) {
+ for (i = 0; (size_t) i < rank; i++) {
*lp = (hssize_t) *jlp;
lp++;
jlp++;
} /* end for */
- } /* end if */
+ }
else {
P = NULL;
sa = (hssize_t *) P;
- } /* end else */
+ }
- status = H5Soffset_simple(space_id, sa);
- if (P != NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR offset, P, JNI_ABORT);
- HDfree(sa);
- } /* end if */
+ if ((status = H5Soffset_simple(space_id, sa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
+done:
+ if (sa)
+ HDfree(sa);
+ if (P)
+ UNPIN_BYTE_ARRAY(ENVONLY, offset, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Soffset_1simple */
@@ -710,12 +695,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sextent_1copy
(JNIEnv *env, jclass clss, jlong space_id, jlong src_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sextent_copy(space_id, src_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sextent_copy(space_id, src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sextent_1copy */
@@ -730,12 +717,14 @@ Java_hdf_hdf5lib_H5_H5Sextent_1equal
{
htri_t bval = JNI_FALSE;
- bval = H5Sextent_equal(space_id, src_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Sextent_equal(space_id, src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sextent_1equal */
@@ -748,12 +737,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sset_1extent_1none
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Sset_extent_none(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sset_extent_none(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1none */
@@ -766,162 +757,131 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab
(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, jlongArray stride, jlongArray count, jlongArray block)
{
- herr_t status = -1;
- jlong *startP, *strideP, *countP, *blockP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *strd;
- hsize_t *cnt;
- hsize_t *blk;
- int rank;
- int i;
- hsize_t *lp;
- jlong *jlp;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sselect_hyperslab: start is NULL");
+ jboolean isCopy;
+ hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL;
+ hsize_t *lp = NULL;
+ jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL;
+ jlong *jlp = NULL;
+ jsize start_rank, stride_rank, count_rank, block_rank;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == start)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start is NULL");
+ if (NULL == count)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count is NULL");
+
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start array length < 0");
+ }
+ if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count array length < 0");
+ }
+
+ if (start_rank != count_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned");
+
+ if (NULL == (strt = lp = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer");
+
+ jlp = (jlong *) startP;
+ for (i = 0; i < start_rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
} /* end if */
- else if (count == NULL) {
- h5nullArgument(env, "H5Sselect_hyperslab: count is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned");
+
+ if (NULL == (cnt = lp = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer");
+
+ jlp = (jlong *) countP;
+ for (i = 0; i < count_rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
} /* end if */
+
+ if (NULL == stride) {
+ strideP = NULL;
+ strd = (hsize_t *) strideP;
+ }
else {
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- if (rank != ENVPTR->GetArrayLength(ENVPAR count)) {
- h5badArgument(env, "H5Sselect_hyperslab: count and start have different rank!");
- return -1;
- } /* end if */
+ if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride array length < 0");
+ }
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sselect_hyperslab: start not pinned");
- return -1;
- } /* end if */
- strt = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sselect_hyperslab: start not converted to hsize_t");
- return -1;
- } /* end if */
+ if (stride_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride and start have different rank!");
- jlp = (jlong *) startP;
- for (i = 0; i < rank; i++) {
+ PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned");
+
+ if (NULL == (strd = lp = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer");
+
+ jlp = (jlong *) strideP;
+ for (i = 0; i < stride_rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end if */
+ }
- countP = ENVPTR->GetLongArrayElements(ENVPAR count, &isCopy);
- if (countP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: count not pinned");
- return -1;
- } /* end if */
- cnt = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (cnt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: count not converted to hsize_t");
- return -1;
- } /* end if */
+ if (NULL == block) {
+ blockP = NULL;
+ blk = (hsize_t *) blockP;
+ }
+ else {
+ if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block array length < 0");
+ }
- jlp = (jlong *) countP;
- for (i = 0; i < rank; i++) {
+ if (block_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned");
+
+ if (NULL == (blk = lp = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer");
+
+ jlp = (jlong *) blockP;
+ for (i = 0; i < block_rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
- } /* end if */
- if (stride == NULL) {
- strideP = NULL;
- strd = (hsize_t *) strideP;
- } /* end if */
- else {
- strideP = ENVPTR->GetLongArrayElements(ENVPAR stride, &isCopy);
- if (strideP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5badArgument(env, "H5Sselect_hyperslab: stride not pinned");
- return -1;
- } /* end if */
- strd = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strd == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: stride not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *) strideP;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end if */
- } /* end if */
- if (block == NULL) {
- blockP = NULL;
- blk = (hsize_t *) blockP;
- } /* end if */
- else {
- blockP = ENVPTR->GetLongArrayElements(ENVPAR block, &isCopy);
- if (blockP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- if (strd != NULL)
- free(strd);
-
- h5JNIFatalError(env, "H5Sselect_hyperslab: block not pinned");
- return -1;
- } /* end if */
- blk = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (blk == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- if (strd != NULL)
- free(strd);
-
- h5JNIFatalError(env, "H5Sget_simple_extent: block not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *) blockP;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end for */
- } /* end else */
-
- status = H5Sselect_hyperslab(space_id, (H5S_seloper_t) op, (const hsize_t *) strt, (const hsize_t *) strd,
- (const hsize_t *) cnt, (const hsize_t *) blk);
-
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
+ } /* end for */
+ }
+
+ if ((status = H5Sselect_hyperslab(space_id, (H5S_seloper_t) op, (const hsize_t *) strt, (const hsize_t *) strd,
+ (const hsize_t *) cnt, (const hsize_t *) blk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (blk)
+ HDfree(blk);
+ if (blockP)
+ UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT);
+ if (strd)
+ HDfree(strd);
+ if (strideP)
+ UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT);
+ if (cnt)
HDfree(cnt);
- if (strideP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(strd);
- } /* end if */
- if (blockP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(blk);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (countP)
+ UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */
@@ -935,12 +895,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Sclose
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sclose(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sclose(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Sclose */
@@ -955,10 +917,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks
{
hssize_t retVal = -1;
- retVal = H5Sget_select_hyper_nblocks((hid_t) spaceid);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Sget_select_hyper_nblocks((hid_t) spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks */
@@ -973,10 +937,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints
{
hssize_t retVal = -1;
- retVal = H5Sget_select_elem_npoints((hid_t) spaceid);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sget_select_elem_npoints((hid_t) spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints */
@@ -989,58 +955,53 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist
(JNIEnv *env, jclass clss, jlong spaceid, jlong startblock, jlong numblocks, jlongArray buf)
{
- herr_t status = -1;
- jlong *bufP;
- jboolean isCopy;
- hsize_t *ba;
- int i;
- int rank;
- hsize_t st;
- hsize_t nb;
-
- st = (hsize_t) startblock;
- nb = (hsize_t) numblocks;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Sget_select_hyper_blocklist: buf is NULL");
- } /* end if */
- else {
- rank = H5Sget_simple_extent_ndims(spaceid);
- if (rank <= 0)
- rank = 1;
- if (ENVPTR->GetArrayLength(ENVPAR buf) < (numblocks * rank)) {
- h5badArgument(env, "H5Sget_select_hyper_blocklist: buf input array too small");
- } /* end if */
- else {
- bufP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_hyper_blocklist: buf not pinned");
- } /* end if */
- else {
- ba = (hsize_t *) HDmalloc((size_t)nb * 2 * (size_t)rank * sizeof(hsize_t));
- if (ba == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5JNIFatalError(env, "H5Screate-simple: buffer not converted to hsize_t");
- } /* end if */
- else {
- status = H5Sget_select_hyper_blocklist((hid_t)spaceid, st, nb, (hsize_t *)ba);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- free(ba);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (numblocks * 2 * rank); i++) {
- bufP[i] = (jlong)ba[i];
- } /* end for */
- free(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *ba = NULL;
+ size_t i, buf_size;
+ jlong *bufP = NULL;
+ jsize buflen;
+ int rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf is NULL");
+ if (numblocks < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: numblocks < 0");
+
+ if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (rank == 0)
+ rank = 1;
+
+ if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf array length < 0");
+ }
+
+ if (buflen < (numblocks * rank))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buffer input array too small");
+
+ PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_hyper_blocklist: buffer not pinned");
+
+ buf_size = (size_t) numblocks * (size_t) 2 * (size_t) rank * sizeof(hsize_t);
+ if (NULL == (ba = (hsize_t *) HDmalloc(buf_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer");
+
+ if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t) startblock, (hsize_t) numblocks, (hsize_t *)ba)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (buf_size / sizeof(hsize_t)); i++) {
+ bufP[i] = (jlong) ba[i];
+ } /* end for */
+
+done:
+ if (ba)
+ HDfree(ba);
+ if (bufP)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist */
@@ -1054,53 +1015,49 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist
(JNIEnv *env, jclass clss, jlong spaceid, jlong startpoint, jlong numpoints, jlongArray buf)
{
- herr_t status = -1;
- jlong *bufP;
- jboolean isCopy;
- hsize_t *ba;
- int i;
- int rank;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Sget_select_elem_pointlist: buf is NULL");
- } /* end if */
- else {
- rank = H5Sget_simple_extent_ndims(spaceid);
- if (rank <= 0)
- rank = 1;
- if (ENVPTR->GetArrayLength(ENVPAR buf) < (numpoints * rank)) {
- h5badArgument(env, "H5Sget_select_elem_pointlist: buf input array too small");
- } /* end if */
- else {
- bufP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_elem_pointlist: buf not pinned");
- } /* end if */
- else {
- ba = (hsize_t *)HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t));
- if (ba == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_select_elem_pointlist: buf not converted to hsize_t");
- } /* end if */
- else {
- status = H5Sget_select_elem_pointlist((hid_t) spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba);
-
- if (status < 0) {
- HDfree(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (numpoints * rank); i++) {
- bufP[i] = (jlong)ba[i];
- } /* end for */
- HDfree(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *ba = NULL;
+ jlong *bufP = NULL;
+ jsize buflen;
+ int i, rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer is NULL");
+
+ if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (rank == 0)
+ rank = 1;
+
+ if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buf array length < 0");
+ }
+
+ if (buflen < (numpoints * rank))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer input array too small");
+
+ PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned");
+
+ if (NULL == (ba = (hsize_t *) HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer");
+
+ if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (numpoints * rank); i++) {
+ bufP[i] = (jlong) ba[i];
+ } /* end for */
+
+done:
+ if (ba)
+ HDfree(ba);
+ if (bufP)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end if */
@@ -1114,70 +1071,53 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds
(JNIEnv *env, jclass clss, jlong spaceid, jlongArray start, jlongArray end)
{
- herr_t status = -1;
- jlong *startP, *endP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *en;
- int rank;
- int i;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sget_select_bounds: start is NULL");
- } /* end if */
- else if (end == NULL) {
- h5nullArgument(env, "H5Sget_select_bounds: end is NULL");
- } /* end else if */
- else {
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_bounds: start not pinned");
- return -1;
- } /* end if */
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_select_bounds: start not converted to hsize_t");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hsize_t *strt = NULL;
+ hsize_t *en = NULL;
+ size_t i;
+ jlong *startP = NULL, *endP = NULL;
+ jsize rank;
+ herr_t status = FAIL;
- endP = ENVPTR->GetLongArrayElements(ENVPAR end, &isCopy);
- if (endP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- free(strt);
- h5JNIFatalError(env, "H5Sget_select_bounds: end not pinned");
- return -1;
- } /* end if */
- en = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (en == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_simple_extent: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ UNUSED(clss);
- status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en);
+ if (NULL == start)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start is NULL");
+ if (NULL == end)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: end is NULL");
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, JNI_ABORT);
- HDfree(strt);
- HDfree(en);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- startP[i] = (jlong)strt[i];
- endP[i] = (jlong)en[i];
- } /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, 0);
- HDfree(strt);
- HDfree(en);
- } /* end else */
- } /* end else */
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_select_bounds: start not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start array length < 0");
+ }
+
+ if (NULL == (strt = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer");
+
+ PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned");
+
+ if (NULL == (en = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer");
+
+ if ((status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) rank; i++) {
+ startP[i] = (jlong) strt[i];
+ endP[i] = (jlong) en[i];
+ } /* end for */
+
+done:
+ if (en)
+ HDfree(en);
+ if (endP)
+ UNPIN_LONG_ARRAY(ENVONLY, end, endP, (status < 0) ? JNI_ABORT : 0);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds */
@@ -1189,45 +1129,39 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds
*/
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Sencode
- (JNIEnv *env, jclass cls, jlong obj_id)
+ (JNIEnv *env, jclass clss, jlong obj_id)
{
- herr_t status = -1;
- unsigned char *bufPtr;
- size_t buf_size = 0;
- jbyteArray returnedArray = NULL;
-
- if (obj_id < 0) {
- h5badArgument(env, "H5Sencode: invalid argument");
- } /* end if */
- else {
- status = H5Sencode(obj_id, NULL, &buf_size);
+ unsigned char *bufPtr = NULL;
+ size_t buf_size = 0;
+ herr_t status = FAIL;
+ jbyteArray returnedArray = NULL;
- if (status < 0) {
- h5libraryError(env);
- } /* end else if */
- else if (buf_size == 0) {
- h5badArgument(env, "H5Sencode: buf_size = 0");
- } /* end if */
- else {
- bufPtr = (unsigned char*)HDcalloc((size_t) 1, buf_size);
- if (bufPtr == NULL) {
- h5outOfMemory(env, "H5Sencode: calloc failed");
- } /* end if */
- else {
- status = H5Sencode((hid_t) obj_id, bufPtr, &buf_size);
-
- if (status < 0) {
- HDfree(bufPtr);
- h5libraryError(env);
- } /* end if */
- else {
- returnedArray = ENVPTR->NewByteArray(ENVPAR (jsize)buf_size);
- ENVPTR->SetByteArrayRegion(ENVPAR returnedArray, 0, (jsize)buf_size, (jbyte*) bufPtr);
- HDfree(bufPtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNUSED(clss);
+
+ if (obj_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: invalid object ID");
+
+ if ((status = H5Sencode2(obj_id, NULL, &buf_size, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size == 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0");
+
+ if (NULL == (bufPtr = (unsigned char *) HDcalloc((size_t) 1, buf_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer");
+
+ if ((status = H5Sencode2((hid_t) obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (returnedArray = ENVPTR->NewByteArray(ENVONLY, (jsize) buf_size)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetByteArrayRegion(ENVONLY, returnedArray, 0, (jsize) buf_size, (jbyte *) bufPtr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (bufPtr)
+ HDfree(bufPtr);
return returnedArray;
} /* end Java_hdf_hdf5lib_H5_H5Sencode */
@@ -1239,29 +1173,25 @@ Java_hdf_hdf5lib_H5_H5Sencode
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sdecode
- (JNIEnv *env, jclass cls, jbyteArray buf)
+ (JNIEnv *env, jclass clss, jbyteArray buf)
{
- hid_t sid = -1;
- jbyte *bufP;
- jboolean isCopy;
+ jboolean isCopy;
+ jbyte *bufP = NULL;
+ hid_t sid = H5I_INVALID_HID;
- if (buf == NULL) {
- h5nullArgument(env, "H5Sdecode: buf is NULL");
- } /* end if */
- else {
- bufP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError( env, "H5Sdecode: buf not pinned");
- } /* end if */
- else {
- sid = H5Sdecode(bufP);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sdecode: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sdecode: buffer not pinned");
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, bufP, JNI_ABORT);
+ if ((sid = H5Sdecode(bufP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (sid < 0)
- h5libraryError(env);
- } /* end else if */
- } /* end else if */
+done:
+ if (bufP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, bufP, JNI_ABORT);
return (jlong)sid;
} /* end Java_hdf_hdf5lib_H5_H5Sdecode */
@@ -1273,16 +1203,18 @@ Java_hdf_hdf5lib_H5_H5Sdecode
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab
- (JNIEnv *env, jclass cls, jlong obj_id)
+ (JNIEnv *env, jclass clss, jlong obj_id)
{
htri_t bval = JNI_FALSE;
- bval = H5Sis_regular_hyperslab((hid_t)obj_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Sis_regular_hyperslab((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab */
@@ -1295,131 +1227,126 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab
(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, jlongArray stride, jlongArray count, jlongArray block)
{
- herr_t status;
- jlong *startP, *strideP, *countP, *blockP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *strd;
- hsize_t *cnt;
- hsize_t *blk;
- int rank;
- int i;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sget_regular_hyperslab: start is NULL");
- } /* end if */
- else if (count == NULL) {
- h5nullArgument(env, "H5Sget_regular_hyperslab: count is NULL");
- } /* end else if */
+ jboolean isCopy;
+ hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL;
+ jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL;
+ jsize start_rank = -1, stride_rank = -1, count_rank = -1, block_rank = -1;
+ int i, rank = -1;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (space_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: invalid dataspace ID");
+
+ if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == start) {
+ startP = NULL;
+ strt = (hsize_t *) startP;
+ }
else {
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- if (rank != ENVPTR->GetArrayLength(ENVPAR count)) {
- h5badArgument(env, "H5Sget_regular_hyperslab: count and start have different rank!");
- return;
- } /* end if */
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start array length < 0");
+ }
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: start not pinned");
- return;
- } /* end if */
- strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: start not converted to hsize_t");
- return;
- } /* end if */
+ if (start_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start rank doesn't match dataspace rank!");
- countP = ENVPTR->GetLongArrayElements(ENVPAR count, &isCopy);
- if (countP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: count not pinned");
- return;
- } /* end if */
- cnt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (cnt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: count not converted to hsize_t");
- return;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned");
- strideP = ENVPTR->GetLongArrayElements(ENVPAR stride, &isCopy);
- if (strideP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5badArgument(env, "H5Sget_regular_hyperslab: stride not pinned");
- return;
- } /* end if */
- strd = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strd == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: stride not converted to hsize_t");
- return;
- } /* end if */
+ if (NULL == (strt = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer");
+ }
- blockP = ENVPTR->GetLongArrayElements(ENVPAR block, &isCopy);
- if (blockP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- HDfree(strd);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: block not pinned");
- return;
- } /* end if */
- blk = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (blk == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- HDfree(strd);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: block not converted to hsize_t");
- return;
- } /* end if */
+ if (NULL == stride) {
+ strideP = NULL;
+ strd = (hsize_t *) strideP;
+ }
+ else {
+ if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride array length < 0");
+ }
- status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(strt);
- HDfree(cnt);
- HDfree(strd);
- HDfree(blk);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (rank); i++) {
- startP[i] = (jlong)strt[i];
- countP[i] = (jlong)cnt[i];
- strideP[i] = (jlong)strd[i];
- blockP[i] = (jlong)blk[i];
- } /* end for */
- HDfree(strt);
- HDfree(cnt);
- HDfree(strd);
- HDfree(blk);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, 0);
- } /* end else */
- } /* end else */
+ if (stride_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned");
+
+ if (NULL == (strd = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer");
+ }
+
+ if (NULL == count) {
+ countP = NULL;
+ cnt = (hsize_t *) countP;
+ }
+ else {
+ if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count array length < 0");
+ }
+
+ if (count_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned");
+
+ if (NULL == (cnt = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer");
+ }
+
+ if (NULL == block) {
+ blockP = NULL;
+ blk = (hsize_t *) blockP;
+ }
+ else {
+ if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block array length < 0");
+ }
+
+ if (block_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned");
+
+ if (NULL == (blk = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer");
+ }
+
+ if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < start_rank; i++) {
+ startP[i] = (jlong) strt[i];
+ countP[i] = (jlong) cnt[i];
+ strideP[i] = (jlong) strd[i];
+ blockP[i] = (jlong) blk[i];
+ } /* end for */
+
+done:
+ if (blk)
+ HDfree(blk);
+ if (blockP)
+ UNPIN_LONG_ARRAY(ENVONLY, block, blockP, (status < 0) ? JNI_ABORT : 0);
+ if (cnt)
+ HDfree(cnt);
+ if (countP)
+ UNPIN_LONG_ARRAY(ENVONLY, count, countP, (status < 0) ? JNI_ABORT : 0);
+ if (strd)
+ HDfree(strd);
+ if (strideP)
+ UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, (status < 0) ? JNI_ABORT : 0);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */
#ifdef __cplusplus
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index 307f1a5..460f12e 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -29,7 +29,10 @@ extern "C" {
#include "h5jni.h"
#include "h5tImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,18 +43,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Topen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
{
- hid_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Topen2((hid_t)loc_id, tName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, tName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Topen2: datatype name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Topen2: datatype name not pinned");
+
+ if ((status = H5Topen2((hid_t)loc_id, datatypeName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Topen2 */
@@ -67,12 +74,14 @@ Java_hdf_hdf5lib_H5_H5Tcommitted
{
htri_t bval = JNI_FALSE;
- bval = H5Tcommitted(type_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tcommitted(type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tcommitted */
@@ -85,12 +94,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tcreate
(JNIEnv *env, jclass clss, jint dclass, jlong size)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tcreate((H5T_class_t )dclass, (size_t)size);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tcreate((H5T_class_t )dclass, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tcreate */
@@ -103,12 +114,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tcopy
(JNIEnv *env, jclass clss, jlong type_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tcopy((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tcopy((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tcopy */
@@ -123,12 +136,14 @@ Java_hdf_hdf5lib_H5_H5Tequal
{
htri_t bval = JNI_FALSE;
- bval = H5Tequal((hid_t)type_id1, (hid_t)type_id2);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Tequal((hid_t)type_id1, (hid_t)type_id2)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tequal */
@@ -141,12 +156,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tlock
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tlock((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tlock((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tlock */
@@ -161,10 +178,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1class
{
H5T_class_t retVal = H5T_NO_CLASS;
- retVal = H5Tget_class((hid_t)type_id);
- if (retVal == H5T_NO_CLASS)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_NO_CLASS == (retVal = H5Tget_class((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1class */
@@ -179,10 +198,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1size
{
size_t retVal = 0;
- retVal = H5Tget_size((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_size((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1size*/
@@ -196,12 +217,14 @@ Java_hdf_hdf5lib_H5_H5Tset_1size
(JNIEnv *env, jclass clss, jlong type_id, jlong size)
{
size_t tsize = (size_t)size;
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_size((hid_t)type_id, tsize);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_size((hid_t)type_id, tsize)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end ifJava_hdf_hdf5lib_H5_H5Tset_1size */
@@ -216,10 +239,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1order
{
H5T_order_t retVal = H5T_ORDER_ERROR;
- retVal = H5Tget_order((hid_t)type_id);
- if (retVal == H5T_ORDER_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_ORDER_ERROR == (retVal = H5Tget_order((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1order */
@@ -232,12 +257,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1order
(JNIEnv *env, jclass clss, jlong type_id, jint order)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_order((hid_t)type_id, (H5T_order_t)order);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_order((hid_t)type_id, (H5T_order_t)order)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1order */
@@ -252,10 +279,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1precision
{
size_t retVal = 0;
- retVal = H5Tget_precision((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_precision((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1precision */
@@ -270,10 +299,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1precision_1long
{
size_t retVal = 0;
- retVal = H5Tget_precision((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (!(retVal = H5Tget_precision((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1precision_1long */
@@ -286,12 +317,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1precision
(JNIEnv *env, jclass clss, jlong type_id, jlong precision)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_precision((hid_t)type_id, (size_t)precision);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_precision((hid_t)type_id, (size_t)precision)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1precision */
@@ -306,10 +339,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1offset
{
int retVal = -1;
- retVal = H5Tget_offset((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Tget_offset((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1offset */
@@ -322,12 +357,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1offset
(JNIEnv *env, jclass clss, jlong type_id, jlong offset)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_offset((hid_t)type_id, (size_t)offset);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_offset((hid_t)type_id, (size_t)offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1offset */
@@ -340,29 +377,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1pad
(JNIEnv *env, jclass clss, jlong type_id, jintArray pad)
{
- herr_t status = -1;
- jboolean isCopy;
- jint *P;
-
- if (pad == NULL) {
- h5nullArgument(env, "H5Tget_pad: pad is NULL");
- } /* end if */
- else {
- P = ENVPTR->GetIntArrayElements(ENVPAR pad, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Tget_pad: pad not pinned");
- } /* end if */
- else {
- status = H5Tget_pad((hid_t)type_id, (H5T_pad_t *)&(P[0]), (H5T_pad_t *)&(P[1]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR pad, P, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR pad, P, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jint *P = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == pad)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_pad: pad is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, pad, P, &isCopy, "H5Tget_pad: pad not pinned");
+
+ if ((status = H5Tget_pad((hid_t)type_id, (H5T_pad_t *)&(P[0]), (H5T_pad_t *)&(P[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (P)
+ UNPIN_INT_ARRAY(ENVONLY, pad, P, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1pad */
@@ -376,12 +407,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1pad
(JNIEnv *env, jclass clss, jlong type_id, jint lsb, jint msb)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_pad((hid_t)type_id, (H5T_pad_t)lsb, (H5T_pad_t)msb);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_pad((hid_t)type_id, (H5T_pad_t)lsb, (H5T_pad_t)msb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1pad */
@@ -396,10 +429,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1sign
{
H5T_sign_t retVal = H5T_SGN_ERROR;
- retVal = H5Tget_sign((hid_t)type_id);
- if (retVal == H5T_SGN_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_SGN_ERROR == (retVal = H5Tget_sign((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1sign */
@@ -412,12 +447,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1sign
(JNIEnv *env, jclass clss, jlong type_id, jint sign)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_sign((hid_t)type_id, (H5T_sign_t)sign);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_sign((hid_t)type_id, (H5T_sign_t)sign)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1sign */
@@ -430,32 +467,31 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1fields_1int
(JNIEnv *env, jclass clss, jlong type_id, jintArray fields)
{
- herr_t status;
- jboolean isCopy;
- jint *P;
-
- if (fields == NULL) {
- h5nullArgument(env, "H5Tget_fields: fields is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR fields) < 5) {
- h5badArgument(env, "H5Tget_fields: fields input array < order 5");
- } /* end else if */
- else {
- P = ENVPTR->GetIntArrayElements(ENVPAR fields, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Tget_fields: fields not pinned");
- } /* end if */
- else {
- status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), (size_t *)&(P[3]), (size_t *)&(P[4]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR fields, P, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR fields, P, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jsize arrLen;
+ jint *P = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fields)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, fields)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields array length < 0");
+ }
+ if (arrLen < 5)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields input array < order 5");
+
+ PIN_INT_ARRAY(ENVONLY, fields, P, &isCopy, "H5Tget_fields_int: fields not pinned");
+
+ if ((status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), (size_t *)&(P[3]), (size_t *)&(P[4]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (P)
+ UNPIN_INT_ARRAY(ENVONLY, fields, P, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1fields_1int */
@@ -469,56 +505,57 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1fields
(JNIEnv *env, jclass clss, jlong type_id, jlongArray fields)
{
- herr_t status;
- jboolean isCopy;
- jlong *fieldsArray;
-
- if (fields == NULL) {
- h5nullArgument(env, "H5Tget_fields: fields is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR fields) < 5) {
- h5badArgument(env, "H5Tget_fields: fields input array < order 5");
- } /* end else if */
- else {
- fieldsArray = ENVPTR->GetLongArrayElements(ENVPAR fields, &isCopy);
- if (fieldsArray == NULL) {
- h5JNIFatalError(env, "H5Tget_fields: fields not pinned");
- } /* end if */
- else {
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- size_t spos_t = 0;
- size_t epos_t = 0;
- size_t esize_t = 0;
- size_t mpos_t = 0;
- size_t msize_t = 0;
- long long fields_temp = *(&fieldsArray[0]);
- spos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[1]);
- epos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[2]);
- esize_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[3]);
- mpos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[4]);
- msize_t = (size_t)fields_temp;
-
- status = H5Tget_fields((hid_t)type_id, &spos_t, &epos_t, &esize_t, &mpos_t, &msize_t);
-
- *(&fieldsArray[0]) = (jlong)spos_t;
- *(&fieldsArray[1]) = (jlong)epos_t;
- *(&fieldsArray[2]) = (jlong)esize_t;
- *(&fieldsArray[3]) = (jlong)mpos_t;
- *(&fieldsArray[4]) = (jlong)msize_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR fields, fieldsArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseLongArrayElements(ENVPAR fields, fieldsArray, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jlong *fieldsArray = NULL;
+ jsize arrLen;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fields)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, fields)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields array length < 0");
+ }
+ if (arrLen < 5)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields input array < order 5");
+
+ PIN_LONG_ARRAY(ENVONLY, fields, fieldsArray, &isCopy, "H5Tget_fields: fields not pinned");
+
+ { /* Direct cast (size_t *)variable fails on 32-bit environment */
+ size_t spos_t = 0;
+ size_t epos_t = 0;
+ size_t esize_t = 0;
+ size_t mpos_t = 0;
+ size_t msize_t = 0;
+ long long fields_temp = *(&fieldsArray[0]);
+ spos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[1]);
+ epos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[2]);
+ esize_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[3]);
+ mpos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[4]);
+ msize_t = (size_t)fields_temp;
+
+ if ((status = H5Tget_fields((hid_t)type_id, &spos_t, &epos_t, &esize_t, &mpos_t, &msize_t)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *(&fieldsArray[0]) = (jlong)spos_t;
+ *(&fieldsArray[1]) = (jlong)epos_t;
+ *(&fieldsArray[2]) = (jlong)esize_t;
+ *(&fieldsArray[3]) = (jlong)mpos_t;
+ *(&fieldsArray[4]) = (jlong)msize_t;
+ } /* end direct cast special handling */
+
+done:
+ if (fieldsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, fields, fieldsArray, (status < 0) ? JNI_ABORT : 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1fields */
/*
@@ -531,8 +568,13 @@ Java_hdf_hdf5lib_H5_H5Tset_1fields
(JNIEnv *env, jclass clss, jlong type_id, jlong spos, jlong epos,
jlong esize, jlong mpos, jlong msize)
{
+ UNUSED(clss);
+
if (H5Tset_fields((hid_t)type_id, (size_t)spos, (size_t)epos, (size_t)esize, (size_t)mpos, (size_t)msize) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1fields */
/*
@@ -546,10 +588,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1ebias
{
size_t retVal = 0;
- retVal = H5Tget_ebias((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (!(retVal = H5Tget_ebias((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1ebias */
@@ -564,10 +608,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long
{
size_t retVal = 0;
- retVal = H5Tget_ebias((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_ebias((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long */
@@ -580,12 +626,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1ebias
(JNIEnv *env, jclass clss, jlong type_id, jlong ebias)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_ebias((hid_t)type_id, (size_t)ebias);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_ebias((hid_t)type_id, (size_t)ebias)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1ebias */
@@ -600,10 +648,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1norm
{
H5T_norm_t retVal = H5T_NORM_ERROR;
- retVal = H5Tget_norm((hid_t)type_id);
- if (retVal == H5T_NORM_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_NORM_ERROR == (retVal = H5Tget_norm((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1norm */
@@ -616,12 +666,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1norm
(JNIEnv *env, jclass clss, jlong type_id, jint norm)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t )norm);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t )norm)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1norm */
@@ -636,10 +688,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1inpad
{
H5T_pad_t retVal = H5T_PAD_ERROR;
- retVal = H5Tget_inpad((hid_t)type_id );
- if (retVal == H5T_PAD_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_PAD_ERROR == (retVal = H5Tget_inpad((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1inpad */
@@ -652,12 +706,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1inpad
(JNIEnv *env, jclass clss, jlong type_id, jint inpad)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t) inpad);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t) inpad)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1inpad */
@@ -672,10 +728,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1cset
{
H5T_cset_t retVal = H5T_CSET_ERROR;
- retVal = H5Tget_cset((hid_t)type_id);
- if (retVal == H5T_CSET_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_CSET_ERROR == (retVal = H5Tget_cset((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1cset */
@@ -688,12 +746,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1cset
(JNIEnv *env, jclass clss, jlong type_id, jint cset)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_cset((hid_t)type_id, (H5T_cset_t)cset);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_cset((hid_t)type_id, (H5T_cset_t)cset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1cset */
@@ -708,10 +768,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1strpad
{
H5T_str_t retVal = H5T_STR_ERROR;
- retVal = H5Tget_strpad((hid_t)type_id);
- if (retVal == H5T_STR_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_STR_ERROR == (retVal = H5Tget_strpad((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1strpad */
@@ -724,12 +786,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1strpad
(JNIEnv *env, jclass clss, jlong type_id, jint strpad)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_strpad((hid_t)type_id, (H5T_str_t)strpad);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_strpad((hid_t)type_id, (H5T_str_t)strpad)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1strpad */
@@ -744,10 +808,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1nmembers
{
int retVal = -1;
- retVal = H5Tget_nmembers((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tget_nmembers((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1nmembers */
@@ -760,17 +826,20 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1name
(JNIEnv *env, jclass clss, jlong type_id, jint field_idx)
{
- char *name;
- jstring str = NULL;
+ char *member_name = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
- name = H5Tget_member_name((hid_t)type_id, (unsigned)field_idx);
- if (name != NULL) {
- str = ENVPTR->NewStringUTF(ENVPAR name);
- H5free_memory(name);
+ if (NULL == (member_name = H5Tget_member_name((hid_t)type_id, (unsigned)field_idx)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if (str == NULL)
- h5JNIFatalError(env, "H5Tget_member_name: returned string not created");
- } /* end if */
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, member_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (member_name)
+ H5free_memory(member_name);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1name */
@@ -784,18 +853,22 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1index
(JNIEnv *env, jclass clss, jlong type_id, jstring field_name)
{
- const char *tName;
+ const char *datatypeName = NULL;
int index = -1;
- PIN_JAVA_STRING(field_name, tName);
- if (tName != NULL) {
- index = H5Tget_member_index((hid_t)type_id, tName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(field_name, tName);
+ if (NULL == field_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_member_index: field name is NULL");
- if (index < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, field_name, datatypeName, NULL, "H5Tget_member_index: field name not pinned");
+
+ if ((index = H5Tget_member_index((hid_t)type_id, datatypeName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, field_name, datatypeName);
return (jint)index;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1index */
@@ -809,12 +882,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1member_1type
(JNIEnv *env, jclass clss, jlong type_id, jint field_idx)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tget_member_type((hid_t)type_id, (unsigned)field_idx);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tget_member_type((hid_t)type_id, (unsigned)field_idx)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1member_1type */
@@ -827,6 +902,9 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1offset
(JNIEnv *env, jclass clss, jlong type_id, jint memno)
{
+ UNUSED(env);
+ UNUSED(clss);
+
return (jlong)H5Tget_member_offset((hid_t)type_id, (unsigned)memno);
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1offset */
@@ -839,12 +917,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1class
(JNIEnv *env, jclass clss, jlong type_id, jint memno)
{
- int retVal = -1;
+ H5T_class_t retVal = H5T_NO_CLASS;
+
+ UNUSED(clss);
- retVal = H5Tget_member_class((hid_t)type_id, (unsigned)memno);
- if (retVal < 0)
- h5libraryError(env);
+ if (H5T_NO_CLASS == (retVal = H5Tget_member_class((hid_t)type_id, (unsigned)memno)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1class */
@@ -857,18 +937,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tinsert
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jlong offset, jlong field_id)
{
- herr_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
long off = (long)offset;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Tinsert((hid_t)type_id, tName, (size_t)off, field_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name,tName);
- if (status < 0)
- h5libraryError(env);
- }
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tinsert: datatype name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Tinsert: datatype name not pinned");
+
+ if ((status = H5Tinsert((hid_t)type_id, datatypeName, (size_t)off, field_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tinsert */
@@ -882,12 +967,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tpack
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tpack((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tpack((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tpack */
@@ -900,12 +987,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Tclose
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tclose((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tclose((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tclose */
@@ -918,12 +1007,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tvlen_1create
(JNIEnv *env, jclass clss, jlong base_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tvlen_create((hid_t)base_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tvlen_create((hid_t)base_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tvlen_1create */
@@ -936,18 +1027,22 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1tag
(JNIEnv *env, jclass clss, jlong type, jstring tag)
{
- herr_t status = -1;
- const char *tagP;
+ const char *tagBuf = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(tag, tagP);
- if (tagP != NULL) {
- status = H5Tset_tag((hid_t)type, tagP);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(tag,tagP);
+ if (NULL == tag)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tset_tag: tag is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, tag, tagBuf, NULL, "H5Tset_tag: tag buffer not pinned");
+
+ if ((status = H5Tset_tag((hid_t)type, tagBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (tagBuf)
+ UNPIN_JAVA_STRING(ENVONLY, tag, tagBuf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1tag */
@@ -961,17 +1056,20 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1tag
(JNIEnv *env, jclass clss, jlong type)
{
- jstring str = NULL;
- char *tag;
+ jstring str = NULL;
+ char *tag = NULL;
- tag = H5Tget_tag((hid_t)type);
- if (tag != NULL) {
- str = ENVPTR->NewStringUTF(ENVPAR tag);
- H5free_memory(tag);
+ UNUSED(clss);
+
+ if (NULL == (tag = H5Tget_tag((hid_t)type)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, tag)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (str == NULL)
- h5JNIFatalError(env, "H5Tget_tag: returned string not created");
- } /* end if */
+done:
+ if (tag)
+ H5free_memory(tag);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1tag */
@@ -985,12 +1083,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1super
(JNIEnv *env, jclass clss, jlong type_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tget_super((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tget_super((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1super */
@@ -1003,12 +1103,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tenum_1create
(JNIEnv *env, jclass clss, jlong base_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tenum_create((hid_t)base_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tenum_create((hid_t)base_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tenum_1create */
@@ -1021,32 +1123,30 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL ) {
- h5nullArgument(env, "H5Tenum_insert: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy2);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tenum_insert: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_insert((hid_t)type_id, nameP, intP);
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *memberName = NULL;
+ jboolean isCopy;
+ jint *intBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert_int: value is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert_int: member name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, memberName, NULL, "H5Tenum_insert_int: member name not pinned");
+
+ PIN_INT_ARRAY(ENVONLY, value, intBuf, &isCopy, "H5Tenum_insert_int: int buffer not pinned");
+
+ if ((status = H5Tenum_insert((hid_t)type_id, memberName, intBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (intBuf)
+ UNPIN_INT_ARRAY(ENVONLY, value, intBuf, (status < 0) ? JNI_ABORT : 0);
+ if (memberName)
+ UNPIN_JAVA_STRING(ENVONLY, name, memberName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int */
@@ -1060,32 +1160,30 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1insert
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_insert: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy2);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tenum_insert: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_insert((hid_t)type_id, nameP, byteP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *memberName = NULL;
+ jboolean isCopy;
+ jbyte *memberBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert: value is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert: member name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, memberName, NULL, "H5Tenum_insert: member name not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, memberBuf, &isCopy, "H5Tenum_insert: member buffer not pinned");
+
+ if ((status = H5Tenum_insert((hid_t)type_id, memberName, memberBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (memberBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, memberBuf, (status < 0) ? JNI_ABORT : 0);
+ if (memberName)
+ UNPIN_JAVA_STRING(ENVONLY, name, memberName);
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1insert */
/*
@@ -1098,51 +1196,39 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int
(JNIEnv *env, jclass clss, jlong type_id, jintArray value, jobjectArray name,
jint size)
{
- herr_t status = -1;
- jint *intP;
- char *nameP;
- jboolean isCopy;
- jstring str;
-
- if (size <= 0) {
- h5badArgument(env, "H5Tenum_nameof: name size < 0");
- } /* end if */
- else if (value == NULL) {
- h5nullArgument(env, "H5Tenum_nameof: value is NULL");
- } /* end if */
- else {
- nameP = (char*)HDmalloc(sizeof(char) * (size_t)size);
- if (nameP == NULL) {
- /* exception -- out of memory */
- h5outOfMemory(env, "H5Tenum_nameof: malloc name size");
- } /* end if */
- else {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy);
- if (intP == NULL) {
- HDfree(nameP);
- h5JNIFatalError(env, "H5Tenum_nameof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_nameof((hid_t)type_id, intP, nameP, (size_t)size);
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
-
- if (status < 0) {
- HDfree(nameP);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR nameP);
- HDfree(nameP);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Tenum_nameof: return array not created");
- } /* end if */
- else
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str;
+ jint *intP = NULL;
+ char *nameP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: value is NULL");
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: name size < 0");
+
+ if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer");
+
+ PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tenum_nameof_int: value not pinned");
+
+ if ((status = H5Tenum_nameof((hid_t)type_id, intP, nameP, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nameP[(size_t)size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, nameP)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (intP)
+ UNPIN_INT_ARRAY(ENVONLY, value, intP, JNI_ABORT);
+ if (nameP)
+ HDfree(nameP);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int */
@@ -1156,49 +1242,36 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1nameof
(JNIEnv *env, jclass clss, jlong type_id, jbyteArray value, jlong size)
{
- herr_t status = -1;
- jbyte *byteP;
- char *nameP;
- jboolean isCopy;
- jstring str = NULL;
-
- if (size <= 0) {
- h5badArgument(env, "H5Tenum_nameof: name size < 0");
- } /* end if */
- else if (value == NULL ) {
- h5nullArgument(env, "H5Tenum_nameof: value is NULL");
- } /* end if */
- else {
- nameP = (char*)HDmalloc(sizeof(char) * (size_t)size);
- if (nameP == NULL) {
- h5outOfMemory(env, "H5Tenum_nameof: malloc name size");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- HDfree(nameP);
- h5JNIFatalError(env, "H5Tenum_nameof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_nameof((hid_t)type_id, byteP, nameP, (size_t)size);
-
- /* free the buffer without copying back */
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
-
- if (status < 0) {
- HDfree(nameP);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR nameP);
- HDfree(nameP);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Tenum_nameof: return array not created");
- } /* end if */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str = NULL;
+ jbyte *byteP = NULL;
+ char *nameP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: name size < 0");
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: value is NULL");
+
+ if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tenum_nameof: value not pinned");
+
+ if ((status = H5Tenum_nameof((hid_t)type_id, byteP, nameP, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nameP[(size_t)size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, nameP)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, JNI_ABORT);
+ if (nameP)
+ HDfree(nameP);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof */
@@ -1212,34 +1285,30 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_valueof: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy2);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tenum_valueof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_valueof((hid_t)type_id, nameP, intP);
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, 0);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *enumValue = NULL;
+ jboolean isCopy;
+ jint *enumValueBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof_int: value is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof_int: enum value name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, enumValue, NULL, "H5Tenum_valueof_int: enum value not pinned");
+
+ PIN_INT_ARRAY(ENVONLY, value, enumValueBuf, &isCopy, "H5Tenum_valueof_int: enum value buffer not pinned");
+
+ if ((status = H5Tenum_valueof((hid_t)type_id, enumValue, enumValueBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (enumValueBuf)
+ UNPIN_INT_ARRAY(ENVONLY, value, enumValueBuf, (status < 0) ? JNI_ABORT : 0);
+ if (enumValue)
+ UNPIN_JAVA_STRING(ENVONLY, name, enumValue);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int */
@@ -1253,34 +1322,30 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1valueof
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_valueof: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy2);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tenum_valueof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_valueof((hid_t)type_id, nameP, byteP);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *enumValue = NULL;
+ jboolean isCopy;
+ jbyte *enumValueBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof: value is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof: enum value name is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, enumValue, NULL, "H5Tenum_valueof: enum value not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, enumValueBuf, &isCopy, "H5Tenum_valueof: enum value buffer not pinned");
+
+ if ((status = H5Tenum_valueof((hid_t)type_id, enumValue, enumValueBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (enumValueBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, enumValueBuf, (status < 0) ? JNI_ABORT : 0);
+ if (enumValue)
+ UNPIN_JAVA_STRING(ENVONLY, name, enumValue);
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1valueof */
/*
@@ -1292,30 +1357,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int
(JNIEnv *env, jclass clss, jlong type_id, jint membno, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tget_member_value: value is NULL");
- } /* end if */
- else {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tget_member_value: value not pinned");
- } /* end if */
- else {
- status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, intP);
-
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jint *intP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_member_value: value is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tget_member_value: value not pinned");
+
+ if ((status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, intP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (intP)
+ UNPIN_INT_ARRAY(ENVONLY, value, intP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int */
@@ -1329,29 +1387,23 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1value
(JNIEnv *env, jclass clss, jlong type_id, jint membno, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5nullArgument( env, "H5Tget_member_value: value is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value,&isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tget_member_value: value not pinned");
- } /* end if */
- else {
- status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, byteP);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *byteP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_member_value: value is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tget_member_value: value not pinned");
+
+ if ((status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1value */
/*
@@ -1365,10 +1417,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims
{
int ndims = -1;
- ndims = H5Tget_array_ndims((hid_t)type_id);
- if (ndims < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((ndims = H5Tget_array_ndims((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims */
@@ -1381,41 +1435,41 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1array_1dims
(JNIEnv *env, jclass clss, jlong type_id, jintArray dims, jintArray perms)
{
- int ndims = -1;
- int dlen;
- int i;
- jint *dimsP;
- hsize_t *cdims = NULL;
- jboolean isCopy;
-
- if (dims == NULL) {
- h5nullArgument( env, "H5Tget_array_dims: value is NULL");
- } /* end if */
- else {
- dimsP = ENVPTR->GetIntArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Tget_array_dims: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
-
- ndims = H5Tget_array_dims2((hid_t)type_id, cdims);
-
- if (ndims < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < dlen; i++) {
- dimsP[i] = (jint) cdims[i];
- } /* end for */
- ENVPTR->ReleaseIntArrayElements(ENVPAR dims, dimsP, 0);
-
- if (cdims) HDfree(cdims);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jsize dlen;
+ jint *dimsP = NULL;
+ int ndims = -1;
+
+ UNUSED(clss);
+ UNUSED(perms);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tget_array_dims: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array length < 0");
+ }
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer");
+
+ if ((ndims = H5Tget_array_dims2((hid_t)type_id, cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ dimsP[i] = (jint) cdims[i];
+ } /* end for */
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_INT_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1dims */
@@ -1431,12 +1485,14 @@ Java_hdf_hdf5lib_H5_H5Tis_1variable_1str
{
htri_t bval = JNI_FALSE;
- bval = H5Tis_variable_str((hid_t)type_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tis_variable_str((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tis_1variable_1str */
@@ -1449,13 +1505,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1native_1type
(JNIEnv *env, jclass clss, jlong type_id, jint direction)
{
- hid_t native_tid = -1;
+ hid_t native_tid = H5I_INVALID_HID;
- native_tid = H5Tget_native_type((hid_t)type_id, (H5T_direction_t)direction);
+ UNUSED(clss);
- if (native_tid < 0)
- h5libraryError(env);
+ if ((native_tid = H5Tget_native_type((hid_t)type_id, (H5T_direction_t)direction)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)native_tid;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1native_1type */
@@ -1470,12 +1527,14 @@ Java_hdf_hdf5lib_H5_H5Tdetect_1class
{
htri_t bval = JNI_FALSE;
- bval = H5Tdetect_class((hid_t)type_id, (H5T_class_t)dtype_class);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tdetect_class((hid_t)type_id, (H5T_class_t)dtype_class)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tdetect_1class */
@@ -1489,18 +1548,22 @@ Java_hdf_hdf5lib_H5_H5Tcommit
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- herr_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Tcommit2((hid_t)loc_id, tName, (hid_t)type, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, tName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tcommit: datatype name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Tcommit: datatype name not pinned");
+
+ if ((status = H5Tcommit2((hid_t)loc_id, datatypeName, (hid_t)type, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
} /* end Java_hdf_hdf5lib_H5_H5Tcommit */
/*
@@ -1512,96 +1575,92 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tarray_1create2
(JNIEnv *env, jclass clss, jlong base_id, jint rank, jlongArray dims)
{
- hid_t retVal = -1;
- jlong *dimsP;
- int dlen;
- hsize_t *cdims = NULL;
- jboolean isCopy;
- int i;
-
- if (rank <= 0) {
- h5badArgument(env, "H5Tarray_create: rank is < 1");
- } /* end if */
- else if (dims == NULL) {
- h5nullArgument(env, "H5Tarray_create: dims is NULL");
- } /* end else if */
- else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError( env, "H5Tarray_create: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- if (dlen != rank) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- } /* end if */
- else {
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
- for (i = 0; i < dlen; i++) {
- cdims[i] = (hsize_t)dimsP[i];
- } /* end for */
-
- retVal = H5Tarray_create2((hid_t)base_id, (unsigned)rank, (const hsize_t*)cdims);
-
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
-
- HDfree(cdims);
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jlong *dimsP = NULL;
+ jsize dlen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (rank <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: rank is < 1");
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dims is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tarray_create: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dims array length < 0");
+ }
+
+ if (dlen != rank)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank");
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer");
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ cdims[i] = (hsize_t)dimsP[i];
+ } /* end for */
+
+ if ((retVal = H5Tarray_create2((hid_t)base_id, (unsigned)rank, (const hsize_t *)cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tarray_1create2 */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Tarray_get_dims2
+ * Method: H5Tget_array_dims2
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2
(JNIEnv *env, jclass clss, jlong type_id, jlongArray dims)
{
- int ndims = -1;
- int dlen;
- int i;
- jlong *dimsP;
- hsize_t *cdims=NULL;
- jboolean isCopy;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Tget_array_dims: value is NULL");
- } /* end if */
- else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims,&isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Tget_array_dims: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
-
- ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims);
-
- if (ndims < 0) {
- if (cdims)
- free(cdims);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < dlen; i++) {
- dimsP[i] = (jlong) cdims[i];
- } /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
-
- if (cdims)
- HDfree(cdims);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jlong *dimsP = NULL;
+ jsize dlen;
+ int ndims = -1;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: value is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tarray_get_dims2: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: dims array length < 0");
+ }
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer");
+
+ if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ dimsP[i] = (jlong) cdims[i];
+ } /* end for */
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 */
@@ -1616,34 +1675,29 @@ Java_hdf_hdf5lib_H5_H5Tconvert
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id, jlong nelmts,
jbyteArray buf, jbyteArray background, jlong plist_id)
{
- herr_t status;
- jbyte *bufP;
- jbyte *bgP = NULL;
- jboolean isCopy;
-
- if (nelmts <= 0) {
- h5badArgument(env, "H5Tconvert: name nelmts < 0");
- } /* end if */
- else {
- bufP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Tconvert: value not pinned");
- } /* end if */
- else {
- if (background)
- bgP = ENVPTR->GetByteArrayElements(ENVPAR background, &isCopy);
-
- status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, (hid_t)plist_id) ;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, bufP, 0);
-
- if (bgP)
- ENVPTR->ReleaseByteArrayElements(ENVPAR background, bgP, 0);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *bufP = NULL;
+ jbyte *bgP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (nelmts <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tconvert: nelmts < 0");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Tconvert: buffer not pinned");
+
+ if (background)
+ PIN_BYTE_ARRAY(ENVONLY, background, bgP, &isCopy, "H5Tconvert: background buffer not pinned");
+
+ if ((status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, (hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (bgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, background, bgP, (status < 0) ? JNI_ABORT : 0);
+ if (bufP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Tconvert */
/*
@@ -1654,8 +1708,13 @@ Java_hdf_hdf5lib_H5_H5Tconvert
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Tflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/*
@@ -1666,10 +1725,14 @@ Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *env, jclass clss, jlong loc_id)
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Trefresh(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Trefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
-}
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ return;
+}
#ifdef __cplusplus
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index fd34ba1..af83caa 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -32,7 +32,11 @@ extern "C" {
hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */
int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
JavaVM *jvm;
+
jobject copy_callback;
jobject close_callback;
jobject create_callback;
@@ -41,22 +45,22 @@ jobject get_callback;
jobject set_callback;
jobject delete_callback;
-H5E_auto2_t efunc;
-void *edata;
+H5E_auto2_t efunc;
+void *edata;
/********************/
/* Local Prototypes */
/********************/
-static int h5str_dump_region_blocks(h5str_t *str, hid_t region, hid_t region_obj);
-static int h5str_dump_region_points(h5str_t *str, hid_t region, hid_t region_obj);
+static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
static int h5str_is_zero(const void *_mem, size_t size);
static hid_t h5str_get_native_type(hid_t type);
static hid_t h5str_get_little_endian_type(hid_t type);
static hid_t h5str_get_big_endian_type(hid_t type);
static htri_t h5str_detect_vlen(hid_t tid);
static htri_t h5str_detect_vlen_str(hid_t tid);
-static int h5tools_dump_simple_data(FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts);
+static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts);
static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts);
static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id,
hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata);
@@ -78,9 +82,10 @@ h5str_array_free
return;
for (i = 0; i < len; i++) {
- if (*(strs + i))
- HDfree(*(strs + i));
+ if (strs[i])
+ HDfree(strs[i]);
} /* for (i=0; i<n; i++)*/
+
HDfree(strs);
} /* end h5str_array_free */
@@ -108,6 +113,9 @@ h5str_free
} /* end h5str_free */
/** reset the max size of the string */
+/*
+ * TODO: no error return. malloc can fail.
+ */
void
h5str_resize
(h5str_t *str, size_t new_len)
@@ -117,7 +125,9 @@ h5str_resize
if (!str || new_len <= 0 || str->max == new_len)
return;
- new_str = (char *)HDmalloc(new_len);
+ if (NULL == (new_str = (char *) HDmalloc(new_len)))
+ return;
+
if (new_len > str->max) /* increase memory */
HDstrcpy(new_str, str->s);
else
@@ -152,860 +162,1048 @@ h5str_append
return HDstrcat(str->s, cstr);
} /* end h5str_append */
-/** print value of a vlen data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
+/*
+ * Converts the given data point string into a real data point.
+ *
+ * Returns:
+ * SUCCESS: Length of string token processed
+ * FAILURE: 0
*/
size_t
-h5str_vlconvert
- (char *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data)
+h5str_convert
+ (JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset)
{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
-
- this_str = NULL;
- this_strlen = 0;
+ unsigned char *ucptr = NULL;
+ static char fmt_llong[8], fmt_ullong[8];
+ H5T_class_t tclass = H5T_NO_CLASS;
+ const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR \
+ H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR \
+ H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR;
+ size_t typeSize = 0;
+ hid_t mtid = H5I_INVALID_HID;
+ char *this_str = NULL;
+ char *token;
+ char *cptr = NULL;
+ int n;
+ size_t retVal = 0;
+
+ if (!in_str)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL");
+ if (!out_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: out_buf is NULL");
+
+ this_str = *in_str;
+ cptr = &(((char *) out_buf)[out_buf_offset]);
+ ucptr = &(((unsigned char *) out_buf)[out_buf_offset]);
+
+ if (H5T_NO_CLASS == (tclass = H5Tget_class(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Build default formats for long long types */
+ if (!fmt_llong[0]) {
+ if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure");
+ if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure");
+ } /* end if */
switch (tclass) {
- case H5T_COMPOUND:
+ case H5T_FLOAT:
{
- unsigned i;
- n = H5Tget_nmembers(tid);
+ token = HDstrtok(this_str, delimiter);
+
+ switch (typeSize) {
+ case sizeof(float):
+ {
+ float tmp_float = 0.0;
- /* remove compound indicators */
- if (str[0] == ' ')
- str++;
- if (str[0] == '{')
- str++;
+ sscanf(token, "%f", &tmp_float);
+ HDmemcpy(cptr, &tmp_float, sizeof(float));
+ break;
+ }
- ptr->p = HDcalloc((size_t)1, size);
- ptr->len = size;
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- str += offset;
- h5str_convert(&str, container, mtid, ptr, 0, expand_data);
- /* remove compound indicators */
- if (str[0] == ',')
- str++;
- if (str[0] == ' ')
- str++;
- H5Tclose(mtid);
+ case sizeof(double):
+ {
+ double tmp_double = 0.0;
+
+ sscanf(token, "%lf", &tmp_double);
+ HDmemcpy(cptr, &tmp_double, sizeof(double));
+ break;
+ }
+#if H5_SIZEOF_LONG_DOUBLE != 0 && H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE
+ case sizeof(long double):
+ {
+ long double tmp_ldouble = 0.0;
+
+ sscanf(token, "%Lf", &tmp_ldouble);
+ HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: floating-point datatype size didn't match any of expected sizes");
+ break;
}
- /* remove compound indicators */
- if (str[0] == '}')
- str++;
- if (str[0] == ' ')
- str++;
+
+ retVal = typeSize;
+
+ break;
}
- break;
- case H5T_ARRAY:
+
+ case H5T_STRING:
{
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
+ size_t len = HDstrlen(this_str);
- /* remove array indicators */
- if (str[0] == '[')
- str++;
- if (str[0] == ' ')
- str++;
+ if (len > 0) {
+ HDstrncpy(cptr, this_str, typeSize);
+ cptr[typeSize - 1] = '\0';
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ retVal = typeSize;
+ }
+ else {
+ cptr = NULL;
+ }
- H5Tget_array_dims2(tid, dims);
+ break;
+ }
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ case H5T_INTEGER:
+ {
+ H5T_sign_t nsign = H5T_SGN_ERROR;
- ptr->p = HDcalloc((size_t)total_elmts, size);
- ptr->len = total_elmts;
- h5str_convert(&str, container, mtid, ptr, 0, expand_data);
- H5Tclose(mtid);
- /* remove array indicators */
- if (str[0] == ' ')
- str++;
- if (str[0] == ']')
- str++;
- if (str[0] == ' ')
- str++;
- }
- break;
- default:
- ptr->len = size;
- ptr->p = HDcalloc(1, size);
- this_strlen = h5str_convert(&str, container, tid, ptr, 0, expand_data);
- break;
- } /* end switch */
+ if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
- return this_strlen;
-} /* end h5str_vlconvert */
+ token = HDstrtok(this_str, delimiter);
-/** print value of a data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
- */
-size_t
-h5str_convert
- (char **str, hid_t container, hid_t tid, hvl_t *ptr, int ptroffset, int expand_data)
-{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
- const char delimiter[] = " ,}]";
-
- char *token;
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str = *str;
- size_t this_strlen;
- int n;
- char *cptr = ((char*) ((hvl_t *) ptr)->p) + ptroffset;
- unsigned char *ucptr = ((unsigned char*) ((hvl_t *) ptr)->p) + ptroffset;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ signed char tmp_char = 0;
- /* Build default formats for long long types */
- if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
- } /* end if */
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%hhu", &tmp_uchar);
+ HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char));
+ }
+ else {
+ sscanf(token, "%hhd", &tmp_char);
+ HDmemcpy(cptr, &tmp_char, sizeof(char));
+ }
- this_strlen = HDstrlen(this_str);
+ break;
+ }
- switch (tclass) {
- case H5T_FLOAT:
- token = HDstrtok (this_str, delimiter);
- if (sizeof(float) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */
- tmp_float = 0;
- sscanf(token, "%f", &tmp_float);
- HDmemcpy(cptr, &tmp_float, sizeof(float));
- }
- else if (sizeof(double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */
- tmp_double = 0;
- sscanf(token, "%%lf", &tmp_double);
- HDmemcpy(cptr, &tmp_double, sizeof(double));
- }
-#if H5_SIZEOF_LONG_DOUBLE !=0
- else if (sizeof(long double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */
- tmp_ldouble = 0;
- sscanf(token, "%Lf", &tmp_ldouble);
- HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
- }
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ short tmp_short = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%hu", &tmp_ushort);
+ HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+ }
+ else {
+ sscanf(token, "%hd", &tmp_short);
+ HDmemcpy(&tmp_short, cptr, sizeof(short));
+ }
+
+ break;
+ }
+
+ case sizeof(int):
+ {
+ unsigned int tmp_uint = 0;
+ int tmp_int = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%u", &tmp_uint);
+ HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int));
+ }
+ else {
+ sscanf(token, "%d", &tmp_int);
+ HDmemcpy(cptr, &tmp_int, sizeof(int));
+ }
+
+ break;
+ }
+
+#if H5_SIZEOF_LONG != H5_SIZEOF_INT
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ long tmp_long = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%lu", &tmp_ulong);
+ HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long));
+ }
+ else {
+ sscanf(token, "%ld", &tmp_long);
+ HDmemcpy(cptr, &tmp_long, sizeof(long));
+ }
+
+ break;
+ }
#endif
- break;
- case H5T_STRING:
- {
- if (this_strlen > 0) {
- HDstrncpy(cptr, this_str, size);
- }
- else {
- cptr = NULL;
- }
- }
- break;
- case H5T_INTEGER:
- token = HDstrtok (this_str, delimiter);
- if (sizeof(char) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */
- tmp_uchar = 0;
- sscanf(token, "%hu", &tmp_uchar);
- HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */
- tmp_char = 0;
- sscanf(token, "%hd", &tmp_char);
- HDmemcpy(cptr, &tmp_char, sizeof(char));
- }
- }
- else if (sizeof(int) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */
- tmp_uint = 0;
- sscanf(token, "%u", &tmp_uint);
- HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_INT)) */
- tmp_int = 0;
- sscanf(token, "%d", &tmp_int);
- HDmemcpy(cptr, &tmp_int, sizeof(int));
- }
- }
- else if (sizeof(short) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */
- tmp_ushort = 0;
- sscanf(token, "%u", &tmp_ushort);
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */
- tmp_short = 0;
- sscanf(token, "%d", &tmp_short);
- HDmemcpy(&tmp_short, cptr, sizeof(short));
- }
- }
- else if (sizeof(long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */
- tmp_ulong = 0;
- sscanf(token, "%lu", &tmp_ulong);
- HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */
- tmp_long = 0;
- sscanf(token, "%ld", &tmp_long);
- HDmemcpy(cptr, &tmp_long, sizeof(long));
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ long long tmp_llong = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, fmt_ullong, &tmp_ullong);
+ HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
+ }
+ else {
+ sscanf(token, fmt_llong, &tmp_llong);
+ HDmemcpy(cptr, &tmp_llong, sizeof(long long));
+ }
+
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: integer datatype size didn't match any of expected sizes");
+ break;
}
+
+ retVal = typeSize;
+
+ break;
}
- else if (sizeof(long long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */
- tmp_ullong = 0;
- sscanf(token, fmt_ullong, &tmp_ullong);
- HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */
- tmp_llong = 0;
- sscanf(token, fmt_llong, &tmp_llong);
- HDmemcpy(cptr, &tmp_llong, sizeof(long long));
+
+ case H5T_COMPOUND:
+ {
+ unsigned i;
+ size_t member_offset;
+
+ if ((n = H5Tget_nmembers(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Skip whitespace and compound indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '{') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ for (i = 0; i < (unsigned) n; i++) {
+ member_offset = H5Tget_member_offset(tid, i);
+
+ if ((mtid = H5Tget_member_type(tid, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, member_offset)) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ goto done;
+ }
+
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
}
+
+ /* Skip whitespace and compound indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '}') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize * (size_t) n;
+
+ break;
}
- break;
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- /* remove compound indicators */
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == '{')
- (*str)++;
-
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_convert(str, container, mtid, ptr, offset, expand_data);
- /* remove compound indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- H5Tclose(mtid);
- }
- /* remove compound indicators */
- if ((*str)[0] == '}')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- break;
- case H5T_ENUM:
- {
- char enum_name[1024];
- void *value;
- if (sizeof(char) == size) {
- tmp_uchar = 0;
- value = &tmp_uchar;
- }
- else if (sizeof(short) == size) {
- tmp_ushort = 0;
- value = &tmp_ushort;
- }
- else if (sizeof(long) == size) {
- tmp_ulong = 0;
- value = &tmp_ulong;
- }
- else if (sizeof(long long) == size) {
- tmp_ullong = 0;
- value = &tmp_ullong;
- }
- else {
- tmp_uint = 0;
- value = &tmp_uint;
- }
- token = HDstrtok (this_str, delimiter);
- H5Tenum_valueof(tid, token, value);
- HDmemcpy(ucptr, value, size);
- }
- break;
- case H5T_REFERENCE:
+
/* TODO handle reference writing */
- cptr = NULL;
- break;
- case H5T_ARRAY:
- {
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- /* remove array indicators */
- if ((*str)[0] == '[')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
-
- mtid = H5Tget_super(tid);
- offset = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
-
- H5Tget_array_dims2(tid, dims);
-
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
-
- cptr = HDcalloc((size_t)total_elmts, offset);
- for (i = 0; i < total_elmts; i++) {
- h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data);
- /* remove array indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- H5Tclose(mtid);
- /* remove array indicators */
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == ']')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- break;
- case H5T_VLEN:
+ case H5T_REFERENCE:
+ cptr = NULL;
+ break;
+
+ case H5T_ENUM:
{
- unsigned int i;
- mtid = H5Tget_super(tid);
- offset = H5Tget_size(mtid);
-
- /* remove vlen indicators */
- if ((*str)[0] == '{')
- (*str)++;
- cptr = HDcalloc(offset, sizeof(hvl_t));
- for (i = 0; (i*offset) < (int)size; i++) {
- h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data);
- /* remove vlen indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == '}')
+ void *value;
+
+ token = HDstrtok(this_str, delimiter);
+
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ value = &tmp_uchar;
+ break;
+ }
+
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ value = &tmp_ushort;
+ break;
+ }
+#if H5_SIZEOF_LONG != H5_SIZEOF_INT
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ value = &tmp_ulong;
break;
+ }
+#endif
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ value = &tmp_ullong;
+ break;
+ }
+#endif
+
+ default:
+ {
+ unsigned int tmp_uint = 0;
+ value = &tmp_uint;
+ break;
+ }
}
- H5Tclose(mtid);
- /* remove vlen indicators */
- if ((*str)[0] == '}')
- (*str)++;
+
+ if (H5Tenum_valueof(tid, token, value) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ HDmemcpy(ucptr, value, typeSize);
+
+ retVal = typeSize;
+
+ break;
}
- break;
- default:
- {
- /* All other types get copied raw */
- HDmemcpy(ucptr, this_str, size);
- }
- break;
- } /* end switch */
+ case H5T_ARRAY:
+ {
+ hsize_t i, dims[H5S_MAX_RANK], total_elmts;
+ size_t baseTypeSize;
+ int rank = 0;
- return this_strlen;
-} /* end h5str_convert */
+ /* Skip whitespace and array indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '[') this_str++;
+ while (*this_str == ' ') this_str++;
-/** print value of a vlen data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
- */
-size_t
-h5str_vlsprintf
- (h5str_t *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data)
-{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Build default formats for long long types */
- if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
- } /* end if */
+ if (!(baseTypeSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
- this_str = NULL;
- this_strlen = 0;
+ if ((rank = H5Tget_array_ndims(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- switch (tclass) {
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- h5str_append(str, " {");
+ if (H5Tget_array_dims2(tid, dims) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_sprintf(str, container, mtid, ((char *) (ptr->p)) + offset, ptr->len, expand_data);
- if ((i + 1) < n)
- h5str_append(str, ", ");
- H5Tclose(mtid);
+ for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++)
+ total_elmts *= dims[i];
+
+ if (NULL == (cptr = (char *) HDcalloc((size_t)total_elmts, baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer");
+
+ for (i = 0; i < total_elmts; i++) {
+ if (!(h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, i * baseTypeSize))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ goto done;
+ }
+
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
}
- h5str_append(str, "} ");
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ /* Skip whitespace and array indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ']') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize * total_elmts;
+
+ break;
}
- break;
- case H5T_ARRAY:
+
+ case H5T_VLEN:
{
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- h5str_append(str, "[ ");
+ size_t i, baseTypeSize;
+ hvl_t *vl_buf = (hvl_t *) out_buf;
+ char cur_char;
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseTypeSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (vl_buf->p = HDmalloc(baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer");
+ vl_buf->len = 1;
+
+ /* Skip whitespace and vlen indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '(') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ cur_char = *this_str;
+ for (i = 0; cur_char != ')' && cur_char != '\0'; i++) {
+ if (i >= vl_buf->len) {
+ char *tmp_realloc;
+
+ if (NULL == (tmp_realloc = (char *) HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer");
+ vl_buf->len *= 2;
+ vl_buf->p = tmp_realloc;
+ }
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ if (!(h5str_convert(ENVONLY, &this_str, container, mtid, vl_buf->p, i * baseTypeSize))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ vl_buf->len = i;
+ goto done;
+ }
- H5Tget_array_dims2(tid, dims);
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
+ }
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ vl_buf->len = i;
- h5str_sprintf(str, container, mtid, ((char *) (ptr->p)), ptr->len, expand_data);
- H5Tclose(mtid);
- h5str_append(str, " ] ");
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ /* Skip whitespace and vlen indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ')') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize;
+
+ break;
+ }
+
+ case H5T_NCLASSES:
+ case H5T_NO_CLASS:
+ {
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: invalid datatype class");
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ {
+ /* All other types get copied raw */
+ HDmemcpy(ucptr, this_str, typeSize);
+
+ retVal = typeSize;
+
+ break;
}
- break;
- default:
- this_strlen = h5str_sprintf(str, container, tid, ((char *) (ptr->p)), ptr->len, expand_data);
- break;
} /* end switch */
- return this_strlen;
-} /* end h5str_vlsprintf */
+done:
+ if (mtid >= 0)
+ H5Tclose(mtid);
-/** print value of a data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
+ return retVal;
+} /* end h5str_convert */
+
+/*
+ * Prints the value of a data point into a string.
+ *
+ * Returns:
+ * SUCCESS: Total number of characters printed
+ * FAILURE: 0
*/
size_t
h5str_sprintf
- (h5str_t *str, hid_t container, hid_t tid, void *ptr, int ptr_len, int expand_data)
+ (JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data)
{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- char *cptr = (char*) (ptr);
- unsigned char *ucptr = (unsigned char*) (ptr);
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ unsigned char *ucptr = (unsigned char *) in_buf;
+ static char fmt_llong[8], fmt_ullong[8];
+ H5T_class_t tclass = H5T_NO_CLASS;
+ size_t typeSize = 0;
+ hid_t mtid = H5I_INVALID_HID;
+ char *cptr = (char *) in_buf;
+ char *this_str = NULL;
+ int n;
+ size_t retVal = 0;
+
+ if (!out_str)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: out_str is NULL");
+ if (!in_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: in_buf is NULL");
+
+ if (H5T_NO_CLASS == (tclass = H5Tget_class(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
/* Build default formats for long long types */
if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
+ if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
+ if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
} /* end if */
- this_str = NULL;
- this_strlen = 0;
-
switch (tclass) {
- case H5T_FLOAT:
- if (sizeof(float) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */
- HDmemcpy(&tmp_float, cptr, sizeof(float));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, "%g", tmp_float);
- }
- else if (sizeof(double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */
- HDmemcpy(&tmp_double, cptr, sizeof(double));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, "%g", tmp_double);
- }
-#if H5_SIZEOF_LONG_DOUBLE !=0
- else if (sizeof(long double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */
- HDmemcpy(&tmp_ldouble, cptr, sizeof(long double));
- this_str = (char*)HDmalloc(27);
- sprintf(this_str, "%Lf", tmp_ldouble);
- }
-#endif
- break;
- case H5T_STRING:
- {
- char *tmp_str;
- size = 0;
+ case H5T_FLOAT:
+ {
+ switch (typeSize) {
+ case sizeof(float):
+ {
+ float tmp_float = 0.0;
- if (H5Tis_variable_str(tid)) {
- tmp_str = *(char**) ptr;
- if (tmp_str != NULL)
- size = HDstrlen(tmp_str);
- }
- else {
- tmp_str = cptr;
- }
+ HDmemcpy(&tmp_float, cptr, sizeof(float));
- /* Check for NULL pointer for string */
- if (tmp_str == NULL) {
- this_str = (char *)HDmalloc(5);
- HDstrncpy(this_str, "NULL", 4);
- }
- else {
- if (size > 0) {
- this_str = (char *)HDmalloc(size+1);
- HDstrncpy(this_str, tmp_str, size);
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%g", tmp_float) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+
+ case sizeof(double):
+ {
+ double tmp_double = 0.0;
+
+ HDmemcpy(&tmp_double, cptr, sizeof(double));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%g", tmp_double) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+#if H5_SIZEOF_LONG_DOUBLE != 0 && H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE
+ case sizeof(long double):
+ {
+ long double tmp_ldouble = 0.0;
+
+ HDmemcpy(&tmp_ldouble, cptr, sizeof(long double));
+
+ if (NULL == (this_str = (char *) HDmalloc(27)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%Lf", tmp_ldouble) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: floating-point datatype size didn't match any of expected sizes");
+ break;
}
+
+ break;
}
- }
- break;
- case H5T_INTEGER:
- if (sizeof(char) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */
- HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char));
- this_str = (char*)HDmalloc(7);
- sprintf(this_str, "%u", tmp_uchar);
+
+ case H5T_STRING:
+ {
+ htri_t is_variable;
+ char *tmp_str;
+
+ typeSize = 0;
+
+ if ((is_variable = H5Tis_variable_str(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (is_variable) {
+ if (NULL != (tmp_str = *(char **) in_buf))
+ typeSize = HDstrlen(tmp_str);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */
- HDmemcpy(&tmp_char, cptr, sizeof(char));
- this_str = (char*)HDmalloc(7);
- sprintf(this_str, "%hhd", tmp_char);
+ tmp_str = cptr;
}
- }
- else if (sizeof(int) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */
- HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int));
- this_str = (char*)HDmalloc(14);
- sprintf(this_str, "%u", tmp_uint);
+
+ /* Check for NULL pointer for string */
+ if (!tmp_str) {
+ if (NULL == (this_str = (char *) HDmalloc(5)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ HDstrncpy(this_str, "NULL", 5);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_INT)) */
- HDmemcpy(&tmp_int, cptr, sizeof(int));
- this_str = (char*)HDmalloc(14);
- sprintf(this_str, "%d", tmp_int);
+ if (typeSize > 0) {
+ if (NULL == (this_str = (char *) HDmalloc(typeSize + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ HDstrncpy(this_str, tmp_str, typeSize);
+ this_str[typeSize] = '\0';
+ }
}
+
+ break;
}
- else if (sizeof(short) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
- this_str = (char*)HDmalloc(9);
- sprintf(this_str, "%u", tmp_ushort);
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */
- HDmemcpy(&tmp_short, cptr, sizeof(short));
- this_str = (char*)HDmalloc(9);
- sprintf(this_str, "%d", tmp_short);
+
+ case H5T_INTEGER:
+ {
+ H5T_sign_t nsign = H5T_SGN_ERROR;
+
+ if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ char tmp_char = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char));
+
+ if (NULL == (this_str = (char *) HDmalloc(7)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_uchar) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_char, cptr, sizeof(char));
+
+ if (NULL == (this_str = (char *) HDmalloc(7)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%hhd", tmp_char) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ short tmp_short = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+
+ if (NULL == (this_str = (char *) HDmalloc(9)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_ushort) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_short, cptr, sizeof(short));
+
+ if (NULL == (this_str = (char *) HDmalloc(9)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%d", tmp_short) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+ case sizeof(int):
+ {
+ unsigned int tmp_uint = 0;
+ int tmp_int = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int));
+
+ if (NULL == (this_str = (char *) HDmalloc(14)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_uint) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_int, cptr, sizeof(int));
+
+ if (NULL == (this_str = (char *) HDmalloc(14)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%d", tmp_int) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+#if H5_SIZEOF_LONG != H5_SIZEOF_INT
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ long tmp_long = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long));
+
+ if (NULL == (this_str = (char *) HDmalloc(23)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%lu", tmp_ulong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_long, cptr, sizeof(long));
+
+ if (NULL == (this_str = (char *) HDmalloc(23)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%ld", tmp_long) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+#endif
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ long long tmp_llong = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, fmt_ullong, tmp_ullong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_llong, cptr, sizeof(long long));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, fmt_llong, tmp_llong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: integer datatype size didn't match any of expected sizes");
+ break;
}
+
+ break;
}
- else if (sizeof(long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */
- HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long));
- this_str = (char*)HDmalloc(23);
- sprintf(this_str, "%lu", tmp_ulong);
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */
- HDmemcpy(&tmp_long, cptr, sizeof(long));
- this_str = (char*)HDmalloc(23);
- sprintf(this_str, "%ld", tmp_long);
+
+ case H5T_COMPOUND:
+ {
+ unsigned i;
+ size_t offset;
+
+ if ((n = H5Tget_nmembers(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < (unsigned) n; i++) {
+ offset = H5Tget_member_offset(tid, i);
+
+ if ((mtid = H5Tget_member_type(tid, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < (unsigned) n)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
}
+
+ if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
}
- else if (sizeof(long long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */
- HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, fmt_ullong, tmp_ullong);
+
+ case H5T_ENUM:
+ {
+ char enum_name[1024];
+
+ if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) {
+ if (!h5str_append(out_str, enum_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */
- HDmemcpy(&tmp_llong, cptr, sizeof(long long));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, fmt_llong, tmp_llong);
+ size_t i;
+
+ if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (1 == typeSize) {
+ if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ for (i = 0; i < typeSize; i++)
+ if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
}
+
+ break;
}
- break;
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- h5str_append(str, " {");
-
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_sprintf(str, container, mtid, cptr + offset, ptr_len, expand_data);
- if ((i + 1) < n)
- h5str_append(str, ", ");
- H5Tclose(mtid);
- }
- h5str_append(str, "} ");
- }
- break;
- case H5T_ENUM:
- {
- char enum_name[1024];
- if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) {
- h5str_append(str, enum_name);
- }
- else {
- size_t i;
- nll = H5Tget_size(tid);
- this_str = (char*)HDmalloc(4 * (nll + 1));
- if (1 == nll) {
- sprintf(this_str, "%#02x", ucptr[0]);
- }
- else {
- for (i = 0; i < (int)nll; i++)
- sprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]);
+ case H5T_REFERENCE:
+ {
+ if (h5str_is_zero(cptr, typeSize)) {
+ if (!h5str_append(out_str, "NULL"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ break;
}
- }
- }
- break;
- case H5T_REFERENCE:
- if (h5str_is_zero(cptr, size)) {
- h5str_append(str, "NULL");
- }
- else {
- if (H5R_DSET_REG_REF_BUF_SIZE == size) {
- /* if (H5Tequal(tid, H5T_STD_REF_DSETREG)) */
+
+ if (H5R_DSET_REG_REF_BUF_SIZE == typeSize) {
+ H5S_sel_type region_type = H5S_SEL_ERROR;
+ hid_t region_obj = H5I_INVALID_HID;
+ hid_t region = H5I_INVALID_HID;
+ char ref_name[1024];
+
/*
* Dataset region reference --
* show the type and the referenced object
*/
- char ref_name[1024];
- hid_t region_obj;
- hid_t region;
- H5S_sel_type region_type;
- /* get name of the dataset the region reference points to using H5Rget_name */
- region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr);
- if (region_obj >= 0) {
- region = H5Rget_region(container, H5R_DATASET_REGION, cptr);
- if (region >= 0) {
- if(expand_data) {
- region_type = H5Sget_select_type(region);
- if(region_type==H5S_SEL_POINTS) {
- h5str_dump_region_points_data(str, region, region_obj);
- }
- else {
- h5str_dump_region_blocks_data(str, region, region_obj);
- }
- }
- else {
- if(H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char*)ref_name, 1024) >= 0) {
- h5str_append(str, ref_name);
- }
-
- region_type = H5Sget_select_type(region);
-
- if(region_type==H5S_SEL_POINTS) {
- h5str_append(str, " REGION_TYPE POINT");
- h5str_dump_region_points(str, region, region_obj);
- }
- else {
- h5str_append(str, " REGION_TYPE BLOCK");
- h5str_dump_region_blocks(str, region, region_obj);
- }
- }
+ /* Get name of the dataset the region reference points to using H5Rget_name */
+ if ((region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((region = H5Rget_region(container, H5R_DATASET_REGION, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Sclose(region);
+ if (expand_data) {
+ if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5S_SEL_POINTS == region_type) {
+ if (h5str_dump_region_points_data(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (h5str_dump_region_blocks_data(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- H5Dclose(region_obj);
}
+ else {
+ if (H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char *)ref_name, 1024) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, ref_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5S_SEL_POINTS == region_type) {
+ if (!h5str_append(out_str, " REGION_TYPE POINT"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (h5str_dump_region_points(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (!h5str_append(out_str, " REGION_TYPE BLOCK"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (h5str_dump_region_blocks(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ }
+
+ if (H5Sclose(region) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ region = H5I_INVALID_HID;
+
+ if (H5Dclose(region_obj) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ region_obj = H5I_INVALID_HID;
}
- else if (H5R_OBJ_REF_BUF_SIZE == size) {
- /* if (H5Tequal(tid, H5T_STD_REF_OBJ)) */
+ else if (H5R_OBJ_REF_BUF_SIZE == typeSize) {
+ H5O_info_t oi;
+ hid_t obj = H5I_INVALID_HID;
+
/*
* Object references -- show the type and OID of the referenced
* object.
*/
- H5O_info_t oi;
- hid_t obj;
- this_str = (char*)HDmalloc(64);
- obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr);
- H5Oget_info2(obj, &oi, H5O_INFO_ALL);
+ if (NULL == (this_str = (char *) HDmalloc(64)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if ((obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Oget_info2(obj, &oi, H5O_INFO_ALL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
/* Print object data and close object */
- sprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr);
- H5Oclose(obj);
+ if (HDsprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ if (H5Oclose(obj) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ obj = H5I_INVALID_HID;
}
+
+ break;
}
- break;
- case H5T_ARRAY:
- {
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- h5str_append(str, "[ ");
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ case H5T_ARRAY:
+ {
+ hsize_t dims[H5S_MAX_RANK], i, total_elmts;
+ size_t baseSize;
+ int rank = 0;
+
+ if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((rank = H5Tget_array_ndims(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Tget_array_dims2(tid, dims);
+ if (H5Tget_array_dims2(tid, dims) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++)
+ total_elmts *= dims[i];
+
+ for (i = 0; i < total_elmts; i++) {
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < total_elmts)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- for (i = 0; i < total_elmts; i++) {
- h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data);
- if ((i + 1) < total_elmts)
- h5str_append(str, ", ");
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ break;
}
- H5Tclose(mtid);
- h5str_append(str, " ] ");
- }
- break;
- case H5T_VLEN:
+
+ case H5T_VLEN:
{
- unsigned int i;
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
-
- h5str_append(str, "{");
- for (i = 0; i < (int)ptr_len; i++) {
- h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data);
- if ((i + 1) < (int)ptr_len)
- h5str_append(str, ", ");
+ unsigned int i;
+ size_t baseSize;
+ hvl_t *vl_buf = (hvl_t *) in_buf;
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < (unsigned) vl_buf->len; i++) {
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *) vl_buf->p)[i * baseSize]), vl_buf->len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < (unsigned) vl_buf->len)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- H5Tclose(mtid);
- h5str_append(str, "}");
- }
- break;
- default:
- {
- /* All other types get printed as hexadecimal */
- size_t i;
- nll = H5Tget_size(tid);
- this_str = (char*)HDmalloc(4 * (nll + 1));
+ if (!h5str_append(out_str, H5_VLEN_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
- if (1 == nll) {
- sprintf(this_str, "%#02x", ucptr[0]);
+ break;
}
- else {
- for (i = 0; i < (int)nll; i++)
- sprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]);
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: invalid datatype class");
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ {
+ size_t i;
+
+ /* All other types get printed as hexadecimal */
+
+ if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (1 == typeSize) {
+ if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ for (i = 0; i < typeSize; i++)
+ if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
}
}
- break;
- } /* end switch */
if (this_str) {
- h5str_append(str, this_str);
- this_strlen = HDstrlen(str->s);
+ if (!h5str_append(out_str, this_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
HDfree(this_str);
+ this_str = NULL;
} /* end if */
- return this_strlen;
+ retVal = HDstrlen(out_str->s);
+
+done:
+ if (mtid >= 0)
+ H5Tclose(mtid);
+
+ return retVal;
} /* end h5str_sprintf */
/*-------------------------------------------------------------------------
@@ -1020,113 +1218,115 @@ h5str_sprintf
*/
static int
h5str_print_region_data_blocks
- (hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
+ (JNIEnv *env, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t *start = NULL;
- hsize_t *count = NULL;
- hsize_t blkndx;
- hsize_t total_size[H5S_MAX_RANK];
- hsize_t numelem;
- hsize_t numindex;
- size_t jndx;
- unsigned indx;
- size_t type_size;
- int ret_value = SUCCEED;
- hid_t mem_space = -1;
- hid_t sid1 = -1;
- void *region_buf = NULL;
+ unsigned indx;
+ hsize_t *dims1 = NULL;
+ hsize_t *start = NULL;
+ hsize_t *count = NULL;
+ hsize_t blkndx;
+ hsize_t total_size[H5S_MAX_RANK];
+ hsize_t numelem;
+ hsize_t numindex;
+ size_t jndx;
+ size_t type_size;
+ hid_t mem_space = H5I_INVALID_HID;
+ hid_t sid1 = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int ret_value = FAIL;
+
+ if (ndims < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_blocks: ndims < 0");
+ if (nblocks < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_blocks: nblocks < 0");
/* Get the dataspace of the dataset */
- if((sid1 = H5Dget_space(region_id)) >= 0) {
+ if ((sid1 = H5Dget_space(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
-
- /* find the dimensions of each data space from the block coordinates */
- numelem = 1;
- for (jndx = 0; jndx < ndims; jndx++) {
- dims1[jndx] = ptdata[jndx + (size_t)ndims] - ptdata[jndx] + 1;
- numelem = dims1[jndx] * numelem;
- } /* end for */
-
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) {
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) {
- /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
- /* 1 2 n 1 2 n */
- if((start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- if((count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- for (blkndx = 0; blkndx < nblocks; blkndx++) {
- for (indx = 0; indx < ndims; indx++) {
- start[indx] = ptdata[indx + blkndx * (hsize_t)ndims * 2];
- count[indx] = dims1[indx];
- } /* end for */
-
- if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
- for (numindex = 0; numindex < numelem; numindex++) {
- h5str_sprintf(str, region_id, type_id, ((char*)region_buf + numindex * type_size), 0, 1);
-
- if (numindex + 1 < numelem)
- h5str_append(str, ", ");
- } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- } /* end if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) */
- } /* end if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) */
- } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
-
- HDfree(count);
- } /* end if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
-
- HDfree(start);
- } /* end if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate dimension array buffer");
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
-
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
-
- if(H5Sclose(sid1) < 0)
- ret_value = -1;
- } /* end if((sid1 = H5Dget_space(region_id)) >= 0) */
- else
- ret_value = -1;
+ /* Find the dimensions of each data space from the block coordinates */
+ for (jndx = 0, numelem = 1; jndx < (size_t) ndims; jndx++) {
+ dims1[jndx] = ptdata[jndx + (size_t)ndims] - ptdata[jndx] + 1;
+ numelem = dims1[jndx] * numelem;
+ } /* end for */
+
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(ndims, dims1, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(type_size = H5Tget_size(type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer");
+
+ /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
+ /* 1 2 n 1 2 n */
+ if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer");
+
+ if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer");
+
+ for (blkndx = 0; blkndx < (hsize_t) nblocks; blkndx++) {
+ for (indx = 0; indx < (unsigned) ndims; indx++) {
+ start[indx] = ptdata[indx + blkndx * (hsize_t)ndims * 2];
+ count[indx] = dims1[indx];
+ } /* end for */
+
+ if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (numindex = 0; numindex < numelem; numindex++) {
+ if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), 0, 1))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (numindex + 1 < numelem)
+ if (!h5str_append(str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
+ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
+
+ ret_value = SUCCEED;
+
+done:
+ if (count)
+ HDfree(count);
+ if (start)
+ HDfree(start);
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
+ HDfree(dims1);
+ if (sid1 >= 0)
+ H5Sclose(sid1);
return ret_value;
} /* end h5str_print_region_data_blocks */
int
h5str_dump_region_blocks_data
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims = -1;
+ int ret_value = FAIL;
/*
* This function fails if the region does not have blocks.
@@ -1135,50 +1335,56 @@ h5str_dump_region_blocks_data
nblocks = H5Sget_select_hyper_nblocks(region);
} H5E_END_TRY;
+ if (nblocks < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print block information */
- if (nblocks > 0) {
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_hyper_blocklist(region, (hsize_t) 0,
- (hsize_t) nblocks, ptdata);
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+ if (alloc_size == (hsize_t)((size_t) alloc_size)) {
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks_data: failed to allocate region block buffer");
+ if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
+ if ((dtype = H5Dget_type(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_print_region_data_blocks(region_id, str, ndims, type_id, nblocks, ptdata);
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- HDfree(ptdata);
- } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- } /* if (nblocks > 0) */
+ ret_value = SUCCEED;
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks_data */
static int
h5str_dump_region_blocks
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- char tmp_str[256];
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ char tmp_str[256];
+ int ndims = -1;
+ int ret_value = FAIL;
+
+ UNUSED(region_id);
/*
* This function fails if the region does not have blocks.
@@ -1187,44 +1393,70 @@ h5str_dump_region_blocks
nblocks = H5Sget_select_hyper_nblocks(region);
} H5E_END_TRY;
+ if (nblocks < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print block information */
- if (nblocks > 0) {
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+ if (alloc_size == (hsize_t)((size_t) alloc_size)) {
int i;
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_hyper_blocklist(region, (hsize_t) 0,
- (hsize_t) nblocks, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer");
- h5str_append(str, " {");
- for (i = 0; i < nblocks; i++) {
- int j;
+ if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_append(str, " ");
+ if (!h5str_append(str, " {"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- /* Start coordinates and opposite corner */
- for (j = 0; j < ndims; j++) {
- tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : "(",
- (unsigned long) ptdata[i * 2 * ndims + j]);
- h5str_append(str, tmp_str);
- }
+ for (i = 0; i < nblocks; i++) {
+ int j;
- for (j = 0; j < ndims; j++) {
- tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : ")-(",
- (unsigned long) ptdata[i * 2 * ndims + j + ndims]);
- h5str_append(str, tmp_str);
- }
- h5str_append(str, ") ");
+ if (!h5str_append(str, " "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /* Start coordinates and opposite corner */
+ for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(",
+ (unsigned long) ptdata[i * 2 * ndims + j]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- h5str_append(str, " }");
- HDfree(ptdata);
- } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- } /* if (nblocks > 0) */
+ for (j = 0; j < ndims; j++) {
+ tmp_str[0] = '\0';
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : ")-(",
+ (unsigned long) ptdata[i * 2 * ndims + j + ndims]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ if (!h5str_append(str, ") "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ tmp_str[0] = '\0';
+ }
+
+ if (!h5str_append(str, " }"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
+
+ ret_value = SUCCEED;
+
+done:
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks */
@@ -1241,76 +1473,76 @@ h5str_dump_region_blocks
*/
static int
h5str_print_region_data_points
- (hid_t region_space, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
+ (JNIEnv *env, hid_t region_space, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t total_size[H5S_MAX_RANK];
- size_t jndx;
- size_t type_size;
- int ret_value = SUCCEED;
- hid_t mem_space = -1;
- void *region_buf = NULL;
+ hsize_t *dims1 = NULL;
+ hsize_t total_size[H5S_MAX_RANK];
+ size_t jndx;
+ size_t type_size;
+ hid_t mem_space = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int ret_value = FAIL;
+
+ UNUSED(ptdata);
+
+ if (npoints < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_points: npoints < 0");
/* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate dimension array buffer");
- dims1[0] = (hsize_t)npoints;
+ dims1[0] = (hsize_t)npoints;
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) {
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(1, dims1, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if((type_size = H5Tget_size(type_id)) > 0) {
+ if (!(type_size = H5Tget_size(type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) {
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer");
- if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) {
+ if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- for (jndx = 0; jndx < npoints; jndx++) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
+ for (jndx = 0; jndx < (size_t) npoints; jndx++) {
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_sprintf(str, region_id, type_id, ((char*)region_buf + jndx * type_size), 0, 1);
+ if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (jndx + 1 < npoints)
- h5str_append(str, ", ");
+ if (jndx + 1 < (size_t) npoints)
+ if (!h5str_append(str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
- } /* end if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) */
- else
- ret_value = -1;
+ ret_value = SUCCEED;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
+done:
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
return ret_value;
} /* end h5str_print_region_data_points */
int
h5str_dump_region_points_data
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims = -1;
+ int ret_value = FAIL;
/*
* This function fails if the region does not have points.
@@ -1319,50 +1551,59 @@ h5str_dump_region_points_data
npoints = H5Sget_select_elem_npoints(region);
} H5E_END_TRY;
+ if (npoints < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print point information */
if (npoints > 0) {
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_elem_pointlist(region, (hsize_t) 0,
- (hsize_t) npoints, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer");
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
+ if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_print_region_data_points(region, region_id,
- str, ndims, type_id, npoints, ptdata);
+ if ((dtype = H5Dget_type(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
-
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- HDfree(ptdata);
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (h5str_print_region_data_points(ENVONLY, region, region_id,
+ str, ndims, type_id, npoints, ptdata) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
}
+ ret_value = SUCCEED;
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
+
return ret_value;
} /* end h5str_dump_region_points_data */
static int
h5str_dump_region_points
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- char tmp_str[256];
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ char tmp_str[256];
+ int ndims = -1;
+ int ret_value = FAIL;
+
+ UNUSED(region_id);
/*
* This function fails if the region does not have points.
@@ -1371,37 +1612,59 @@ h5str_dump_region_points
npoints = H5Sget_select_elem_npoints(region);
} H5E_END_TRY;
+ if (npoints < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print point information */
if (npoints > 0) {
int i;
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_elem_pointlist(region, (hsize_t) 0,
- (hsize_t) npoints, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: failed to allocate region point buffer");
+
+ if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(str, " {"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- h5str_append(str, " {");
for (i = 0; i < npoints; i++) {
int j;
- h5str_append(str, " ");
+ if (!h5str_append(str, " "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : "(",
- (unsigned long) (ptdata[i * ndims + j]));
- h5str_append(str, tmp_str);
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(",
+ (unsigned long) (ptdata[i * ndims + j])) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (j = 0; j < ndims; j++) */
- h5str_append(str, ") ");
+ if (!h5str_append(str, ") "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (i = 0; i < npoints; i++) */
- h5str_append(str, " }");
- HDfree(ptdata);
+ if (!h5str_append(str, " }"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */
} /* end if (npoints > 0) */
+ ret_value = SUCCEED;
+
+done:
+ if (ptdata)
+ HDfree(ptdata);
+
return ret_value;
} /* end h5str_dump_region_points */
@@ -1419,6 +1682,37 @@ h5str_is_zero
} /* end h5str_is_zero */
/*-------------------------------------------------------------------------
+ * Function: h5str_detect_vlen
+ *
+ * Purpose: Recursive check for any variable length data in given type.
+ *
+ * Return:
+ * 1 : type contains any variable length data
+ * 0 : type doesn't contain any variable length data
+ * Negative value: error occurred
+ *-------------------------------------------------------------------------
+ */
+static htri_t
+h5str_detect_vlen
+ (hid_t tid)
+{
+ htri_t ret = FAIL;
+
+ /* Recursively detect any vlen data values in type (compound, array ...) */
+ ret = H5Tdetect_class(tid, H5T_VLEN);
+ if ((ret == 1) || (ret < 0))
+ goto done;
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ ret = h5str_detect_vlen_str(tid);
+ if ((ret == 1) || (ret < 0))
+ goto done;
+
+done:
+ return ret;
+} /* end h5str_detect_vlen */
+
+/*-------------------------------------------------------------------------
* Function: h5str_detect_vlen_str
*
* Purpose: Recursive check for variable length string of a datatype.
@@ -1459,12 +1753,10 @@ h5str_detect_vlen_str
unsigned i = 0;
int n = H5Tget_nmembers(tid);
- if(n < 0) {
- n = ret;
+ if (n < 0)
goto done;
- } /* end if */
- for(i = 0; i < n; i++) {
+ for(i = 0; i < (unsigned) n; i++) {
hid_t mtid = H5Tget_member_type(tid, i);
ret = h5str_detect_vlen_str(mtid);
@@ -1494,15 +1786,18 @@ static hid_t
h5str_get_native_type
(hid_t type)
{
- hid_t p_type;
H5T_class_t type_class;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(type);
- if(type_class==H5T_BITFIELD)
- p_type=H5Tcopy(type);
+ if ((type_class = H5Tget_class(type)) < 0)
+ goto done;
+
+ if (type_class == H5T_BITFIELD)
+ p_type = H5Tcopy(type);
else
- p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
+ p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT);
+done:
return(p_type);
} /* end h5str_get_native_type */
@@ -1520,73 +1815,89 @@ static hid_t
h5str_get_little_endian_type
(hid_t tid)
{
- hid_t p_type=-1;
H5T_class_t type_class;
- size_t size;
H5T_sign_t sign;
+ size_t size;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(tid);
- size = H5Tget_size(tid);
- sign = H5Tget_sign(tid);
+ if ((type_class = H5Tget_class(tid)) < 0)
+ goto done;
- switch( type_class )
- {
- case H5T_INTEGER:
- {
- if ( size == 1 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I8LE);
- else if ( size == 2 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I16LE);
- else if ( size == 4 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I32LE);
- else if ( size == 8 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I64LE);
- else if ( size == 1 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U8LE);
- else if ( size == 2 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U16LE);
- else if ( size == 4 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U32LE);
- else if ( size == 8 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U64LE);
- }
- break;
+ if (!(size = H5Tget_size(tid)))
+ goto done;
- case H5T_FLOAT:
- if ( size == 4)
- p_type=H5Tcopy(H5T_IEEE_F32LE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_IEEE_F64LE);
- break;
+ if ((sign = H5Tget_sign(tid)) < 0)
+ goto done;
- case H5T_BITFIELD:
- {
- if ( size == 1)
- p_type=H5Tcopy(H5T_STD_B8LE);
- else if ( size == 2)
- p_type=H5Tcopy(H5T_STD_B16LE);
- else if ( size == 4)
- p_type=H5Tcopy(H5T_STD_B32LE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_STD_B64LE);
- }
- break;
+ switch ( type_class ) {
+ case H5T_INTEGER:
+ {
+ if ( size == 1 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I8LE);
+ else if ( size == 2 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I16LE);
+ else if ( size == 4 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I32LE);
+ else if ( size == 8 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I64LE);
+ else if ( size == 1 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U8LE);
+ else if ( size == 2 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U16LE);
+ else if ( size == 4 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U32LE);
+ else if ( size == 8 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U64LE);
+
+ break;
+ }
- case H5T_TIME:
- case H5T_OPAQUE:
- case H5T_STRING:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- break;
+ case H5T_FLOAT:
+ {
+ if ( size == 4 )
+ p_type = H5Tcopy(H5T_IEEE_F32LE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_IEEE_F64LE);
- default:
- break;
+ break;
+ }
+ case H5T_BITFIELD:
+ {
+ if ( size == 1 )
+ p_type = H5Tcopy(H5T_STD_B8LE);
+ else if ( size == 2 )
+ p_type = H5Tcopy(H5T_STD_B16LE);
+ else if ( size == 4 )
+ p_type = H5Tcopy(H5T_STD_B32LE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_STD_B64LE);
+
+ break;
+ }
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ goto done;
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_OPAQUE:
+ case H5T_STRING:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ break;
+
+ default:
+ break;
}
+done:
return(p_type);
} /* end h5str_get_little_endian_type */
@@ -1603,106 +1914,91 @@ static hid_t
h5str_get_big_endian_type
(hid_t tid)
{
- hid_t p_type=-1;
H5T_class_t type_class;
- size_t size;
H5T_sign_t sign;
+ size_t size;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(tid);
- size = H5Tget_size(tid);
- sign = H5Tget_sign(tid);
-
- switch( type_class )
- {
- case H5T_INTEGER:
- {
- if ( size == 1 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I8BE);
- else if ( size == 2 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I16BE);
- else if ( size == 4 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I32BE);
- else if ( size == 8 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I64BE);
- else if ( size == 1 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U8BE);
- else if ( size == 2 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U16BE);
- else if ( size == 4 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U32BE);
- else if ( size == 8 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U64BE);
- }
- break;
-
- case H5T_FLOAT:
- if ( size == 4)
- p_type=H5Tcopy(H5T_IEEE_F32BE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_IEEE_F64BE);
- break;
+ if ((type_class = H5Tget_class(tid)) < 0)
+ goto done;
- case H5T_BITFIELD:
- {
- if ( size == 1)
- p_type=H5Tcopy(H5T_STD_B8BE);
- else if ( size == 2)
- p_type=H5Tcopy(H5T_STD_B16BE);
- else if ( size == 4)
- p_type=H5Tcopy(H5T_STD_B32BE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_STD_B64BE);
- }
- break;
+ if (!(size = H5Tget_size(tid)))
+ goto done;
- case H5T_TIME:
- case H5T_OPAQUE:
- case H5T_STRING:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- break;
+ if ((sign = H5Tget_sign(tid)) < 0)
+ goto done;
- default:
- break;
+ switch ( type_class ) {
+ case H5T_INTEGER:
+ {
+ if ( size == 1 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I8BE);
+ else if ( size == 2 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I16BE);
+ else if ( size == 4 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I32BE);
+ else if ( size == 8 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I64BE);
+ else if ( size == 1 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U8BE);
+ else if ( size == 2 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U16BE);
+ else if ( size == 4 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U32BE);
+ else if ( size == 8 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U64BE);
+
+ break;
+ }
- }
+ case H5T_FLOAT:
+ {
+ if ( size == 4 )
+ p_type = H5Tcopy(H5T_IEEE_F32BE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_IEEE_F64BE);
- return(p_type);
-} /* end h5str_get_big_endian_type */
+ break;
+ }
-/*-------------------------------------------------------------------------
- * Function: h5str_detect_vlen
- *
- * Purpose: Recursive check for any variable length data in given type.
- *
- * Return:
- * 1 : type conatains any variable length data
- * 0 : type doesn't contain any variable length data
- * Negative value: error occur
- *-------------------------------------------------------------------------
- */
-static htri_t
-h5str_detect_vlen
- (hid_t tid)
-{
- htri_t ret;
+ case H5T_BITFIELD:
+ {
+ if ( size == 1 )
+ p_type = H5Tcopy(H5T_STD_B8BE);
+ else if ( size == 2 )
+ p_type = H5Tcopy(H5T_STD_B16BE);
+ else if ( size == 4 )
+ p_type = H5Tcopy(H5T_STD_B32BE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_STD_B64BE);
+
+ break;
+ }
- /* recursive detect any vlen data values in type (compound, array ...) */
- ret = H5Tdetect_class(tid, H5T_VLEN);
- if((ret == 1) || (ret < 0))
- goto done;
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ goto done;
+ break;
+ }
- /* recursive detect any vlen string in type (compound, array ...) */
- ret = h5str_detect_vlen_str(tid);
- if((ret == 1) || (ret < 0))
- goto done;
+ case H5T_TIME:
+ case H5T_OPAQUE:
+ case H5T_STRING:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ break;
+
+ default:
+ break;
+ }
done:
- return ret;
-} /* end h5str_detect_vlen */
+ return(p_type);
+} /* end h5str_get_big_endian_type */
/*-------------------------------------------------------------------------
* Function: render_bin_output
@@ -1717,201 +2013,261 @@ static int
h5str_render_bin_output
(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts)
{
- int ret_value = 0;
- unsigned char *mem = (unsigned char*)_mem;
- size_t size; /* datum size */
- hsize_t block_index;
- H5T_class_t type_class;
-
- if((size = H5Tget_size(tid)) > 0) {
-
- if((type_class = H5Tget_class(tid)) >= 0) {
-
- switch (type_class) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_ENUM:
- block_index = block_nelmts * size;
- while(block_index > 0) {
- size_t bytes_in = 0; /* # of bytes to write */
- size_t bytes_wrote = 0; /* # of bytes written */
- size_t item_size = size; /* size of items in bytes */
-
- if(block_index > sizeof(size_t))
- bytes_in = sizeof(size_t);
- else
- bytes_in = (size_t)block_index;
+ unsigned char *mem = (unsigned char*)_mem;
+ H5T_class_t type_class;
+ hsize_t block_index;
+ size_t size; /* datum size */
+ int ret_value = 0;
+
+ if (!(size = H5Tget_size(tid))) {
+ ret_value = FAIL;
+ goto done;
+ }
- bytes_wrote = fwrite(mem, 1, bytes_in, stream);
+ if ((type_class = H5Tget_class(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(bytes_wrote != bytes_in || (0 == bytes_wrote && ferror(stream))) {
- ret_value = -1;
- break;
- }
+ switch (type_class) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_ENUM:
+ {
+ block_index = block_nelmts * size;
+ while (block_index > 0) {
+ size_t bytes_in = 0; /* # of bytes to write */
+ size_t bytes_wrote = 0; /* # of bytes written */
- block_index -= (hsize_t)bytes_wrote;
- mem = mem + bytes_wrote;
- }
+ if (block_index > sizeof(size_t))
+ bytes_in = sizeof(size_t);
+ else
+ bytes_in = (size_t)block_index;
+
+ bytes_wrote = fwrite(mem, 1, bytes_in, stream);
+
+ if (bytes_wrote != bytes_in || (0 == bytes_wrote && ferror(stream))) {
+ ret_value = FAIL;
break;
- case H5T_STRING:
- {
- unsigned int i;
- H5T_str_t pad;
- char *s;
- unsigned char tempuchar;
+ }
+
+ block_index -= (hsize_t)bytes_wrote;
+ mem = mem + bytes_wrote;
+ }
- pad = H5Tget_strpad(tid);
+ break;
+ }
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
+ case H5T_STRING:
+ {
+ unsigned char tempuchar;
+ unsigned int i;
+ H5T_str_t pad;
+ char *s;
- if (H5Tis_variable_str(tid)) {
- s = *(char**) mem;
- if (s != NULL)
- size = HDstrlen(s);
- }
- else {
- s = (char *) mem;
- }
- for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) {
- HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char));
- if (1 != fwrite(&tempuchar, sizeof(unsigned char), 1, stream)) {
- ret_value = -1;
- break;
- }
- } /* i */
- if(ret_value < 0)
- break;
- } /* for (block_index = 0; block_index < block_nelmts; block_index++) */
+ if ((pad = H5Tget_strpad(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char *)_mem) + block_index * size;
+
+ if (H5Tis_variable_str(tid)) {
+ s = *(char**) mem;
+ if (s != NULL)
+ size = HDstrlen(s);
}
- break;
- case H5T_COMPOUND:
- {
- unsigned j;
- hid_t memb;
- unsigned nmembs;
- size_t offset;
-
- nmembs = (unsigned)H5Tget_nmembers(tid);
-
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- for (j = 0; j < nmembs; j++) {
- offset = H5Tget_member_offset(tid, j);
- memb = H5Tget_member_type(tid, j);
-
- if (h5str_render_bin_output(stream, container, memb, mem + offset, 1) < 0) {
- H5Tclose(memb);
- ret_value = -1;
- break;
- }
-
- H5Tclose(memb);
- }
- if(ret_value < 0)
- break;
- }
+ else {
+ s = (char *) mem;
}
- break;
- case H5T_ARRAY:
- {
- int k, ndims;
- hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts;
- hid_t memb;
-
- /* get the array's base datatype for each element */
- memb = H5Tget_super(tid);
- ndims = H5Tget_array_ndims(tid);
- H5Tget_array_dims2(tid, dims);
-
- /* calculate the number of array elements */
- for (k = 0, nelmts = 1; k < ndims; k++) {
- temp_nelmts = nelmts;
- temp_nelmts *= dims[k];
- nelmts = (size_t) temp_nelmts;
+ for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) {
+ HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char));
+ if (1 != fwrite(&tempuchar, sizeof(unsigned char), 1, stream)) {
+ ret_value = FAIL;
+ break;
}
+ } /* i */
+ if (ret_value < 0)
+ break;
+ } /* for (block_index = 0; block_index < block_nelmts; block_index++) */
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- /* dump the array element */
- if (h5str_render_bin_output(stream, container, memb, mem, nelmts) < 0) {
- ret_value = -1;
- break;
- }
+ break;
+ }
+
+ case H5T_COMPOUND:
+ {
+ unsigned j;
+ size_t offset;
+ hid_t memb = H5I_INVALID_HID;
+ int nmembs;
+
+ if ((nmembs = H5Tget_nmembers(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+ for (j = 0; j < (unsigned) nmembs; j++) {
+ offset = H5Tget_member_offset(tid, j);
+ memb = H5Tget_member_type(tid, j);
+
+ if (h5str_render_bin_output(stream, container, memb, mem + offset, 1) < 0) {
+ H5Tclose(memb);
+ ret_value = FAIL;
+ break;
}
+
H5Tclose(memb);
}
- break;
- case H5T_VLEN:
- {
- hsize_t nelmts;
- hid_t memb;
- /* get the VL sequences's base datatype for each element */
- memb = H5Tget_super(tid);
+ if (ret_value < 0)
+ break;
+ }
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- /* Get the number of sequence elements */
- nelmts = ((hvl_t *) mem)->len;
+ break;
+ }
- /* dump the array element */
- if (h5str_render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)), nelmts) < 0) {
- ret_value = -1;
- break;
- }
- }
- H5Tclose(memb);
+ case H5T_ARRAY:
+ {
+ hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts;
+ hid_t memb;
+ int k, ndims;
+
+ /* Get the array's base datatype for each element */
+ if ((memb = H5Tget_super(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((ndims = H5Tget_array_ndims(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Tget_array_dims2(tid, dims) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Calculate the number of array elements */
+ for (k = 0, nelmts = 1; k < ndims; k++) {
+ temp_nelmts = nelmts;
+ temp_nelmts *= dims[k];
+ nelmts = (size_t) temp_nelmts;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ /* dump the array element */
+ if (h5str_render_bin_output(stream, container, memb, mem, nelmts) < 0) {
+ ret_value = FAIL;
+ break;
}
- break;
- case H5T_REFERENCE:
- {
- if (H5Tequal(tid, H5T_STD_REF_DSETREG)) {
- /* region data */
- hid_t region_id, region_space;
- H5S_sel_type region_type;
-
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem);
- if (region_id >= 0) {
- region_space = H5Rget_region(container, H5R_DATASET_REGION, mem);
- if (region_space >= 0) {
- region_type = H5Sget_select_type(region_space);
- if(region_type == H5S_SEL_POINTS)
- ret_value = render_bin_output_region_points(stream, region_space, region_id, container);
- else
- ret_value = render_bin_output_region_blocks(stream, region_space, region_id, container);
- H5Sclose(region_space);
- } /* end if (region_space >= 0) */
- H5Dclose(region_id);
- } /* end if (region_id >= 0) */
- if(ret_value < 0)
- break;
- }
+ }
+
+ H5Tclose(memb);
+
+ break;
+ }
+
+ case H5T_VLEN:
+ {
+ hsize_t nelmts;
+ hid_t memb;
+
+ /* Get the VL sequences's base datatype for each element */
+ if ((memb = H5Tget_super(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ /* Get the number of sequence elements */
+ nelmts = ((hvl_t *) mem)->len;
+
+ /* dump the array element */
+ if (h5str_render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)), nelmts) < 0) {
+ ret_value = FAIL;
+ break;
+ }
+ }
+
+ H5Tclose(memb);
+
+ break;
+ }
+
+ case H5T_REFERENCE:
+ {
+ if (H5Tequal(tid, H5T_STD_REF_DSETREG)) {
+ H5S_sel_type region_type;
+ hid_t region_id, region_space;
+
+ /* Region data */
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ if ((region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem)) < 0)
+ continue;
+
+ if ((region_space = H5Rget_region(container, H5R_DATASET_REGION, mem)) < 0) {
+ H5Dclose(region_id);
+ continue;
}
- else if (H5Tequal(tid, H5T_STD_REF_OBJ)) {
- ;
+
+ if ((region_type = H5Sget_select_type(region_space)) < 0) {
+ H5Sclose(region_space);
+ H5Dclose(region_id);
+ continue;
}
+
+ if (region_type == H5S_SEL_POINTS)
+ ret_value = render_bin_output_region_points(stream, region_space, region_id, container);
+ else
+ ret_value = render_bin_output_region_blocks(stream, region_space, region_id, container);
+
+ H5Sclose(region_space);
+ H5Dclose(region_id);
+
+ if (ret_value < 0)
+ break;
}
- break;
- default:
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- if (size != fwrite(mem, sizeof(char), size, stream)) {
- ret_value = -1;
- break;
- }
- }
+ }
+ else if (H5Tequal(tid, H5T_STD_REF_OBJ)) {
+ ;
+ }
+
+ break;
+ }
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ ret_value = FAIL;
+ goto done;
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+ if (size != fwrite(mem, sizeof(char), size, stream)) {
+ ret_value = FAIL;
break;
+ }
}
- } /* end if((type_class = H5Tget_class(tid)) >= 0) */
- else
- ret_value = -1;
- } /* end if((size = H5Tget_size(tid)) > 0) */
- else
- ret_value = -1;
+ break;
+ }
+done:
return ret_value;
} /* end h5str_render_bin_output */
@@ -1930,96 +2286,107 @@ static int
render_bin_output_region_data_blocks
(FILE *stream, hid_t region_id, hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t *start = NULL;
- hsize_t *count = NULL;
- hsize_t numelem;
- hsize_t total_size[H5S_MAX_RANK];
- int jndx;
- size_t type_size;
- hid_t mem_space = -1;
- void *region_buf = NULL;
- int blkndx;
- hid_t sid1 = -1;
- int ret_value = SUCCEED;
+ hsize_t *dims1 = NULL;
+ hsize_t *start = NULL;
+ hsize_t *count = NULL;
+ hsize_t numelem;
+ hsize_t total_size[H5S_MAX_RANK];
+ size_t type_size;
+ hid_t sid1 = H5I_INVALID_HID;
+ hid_t mem_space = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int blkndx;
+ int jndx;
+ int ret_value = SUCCEED;
/* Get the dataspace of the dataset */
- if((sid1 = H5Dget_space(region_id)) >= 0) {
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- /* find the dimensions of each data space from the block coordinates */
- numelem = 1;
- for (jndx = 0; jndx < ndims; jndx++) {
- dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1;
- numelem = dims1[jndx] * numelem;
- }
+ if ((sid1 = H5Dget_space(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) {
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) {
- /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
- /* 1 2 n 1 2 n */
- if((start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- if((count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- for (blkndx = 0; blkndx < nblocks; blkndx++) {
- for (jndx = 0; jndx < ndims; jndx++) {
- start[jndx] = ptdata[jndx + blkndx * ndims * 2];
- count[jndx] = dims1[jndx];
- }
-
- if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
- ret_value = h5str_render_bin_output(stream, container, type_id, (char*)region_buf, numelem);
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- } /* end if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- } /* end if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- /* Render the region data element end */
- } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
-
- HDfree(count);
- } /* end if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(start);
- } /* end if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- if(H5Sclose(sid1) < 0)
- ret_value = -1;
- } /* end if((sid1 = H5Dget_space(region_id)) >= 0) */
- else
- ret_value = -1;
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Find the dimensions of each data space from the block coordinates */
+ for (jndx = 0, numelem = 1; jndx < ndims; jndx++) {
+ dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1;
+ numelem = dims1[jndx] * numelem;
+ }
+
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(ndims, dims1, NULL)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (!(type_size = H5Tget_size(type_id))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
+ /* 1 2 n 1 2 n */
+ if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (blkndx = 0; blkndx < nblocks; blkndx++) {
+ for (jndx = 0; jndx < ndims; jndx++) {
+ start[jndx] = ptdata[jndx + blkndx * ndims * 2];
+ count[jndx] = dims1[jndx];
+ }
+
+ if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (h5str_render_bin_output(stream, container, type_id, (char *)region_buf, numelem) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Render the region data element end */
+ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
+
+done:
+ if (count)
+ HDfree(count);
+ if (start)
+ HDfree(start);
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
+ HDfree(dims1);
+ if (sid1 >= 0)
+ H5Sclose(sid1);
return ret_value;
} /* end render_bin_output_region_data_blocks */
@@ -2039,50 +2406,62 @@ static int
render_bin_output_region_blocks
(FILE *stream, hid_t region_space, hid_t region_id, hid_t container)
{
- int ret_value = SUCCEED;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata = NULL;
- int ndims;
- hid_t dtype;
- hid_t type_id;
-
- if((nblocks = H5Sget_select_hyper_nblocks(region_space)) > 0) {
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims;
+ int ret_value = SUCCEED;
+
+ if ((nblocks = H5Sget_select_hyper_nblocks(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (nblocks > 0) {
/* Print block information */
- if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) {
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if((ptdata = (hsize_t*)HDmalloc((size_t)alloc_size)) != NULL) {
- if(H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) >= 0) {
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
- ret_value = render_bin_output_region_data_blocks(stream, region_id, container, ndims,
- type_id, nblocks, ptdata);
-
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Sget_select_hyper_blocklist(region_space, (hsize_t) 0, (hsize_t) nblocks, ptdata) >= 0) */
- else
- ret_value = -1;
-
- HDfree(ptdata);
- } /* end if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) != NULL) */
- else
- ret_value = -1;
- } /* end if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) */
- else
- ret_value = -1;
- } /* end if((nblocks = H5Sget_select_hyper_nblocks(region_space)) > 0) */
- else
- ret_value = -1;
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((dtype = H5Dget_type(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (render_bin_output_region_data_blocks(stream, region_id, container,
+ ndims, type_id, nblocks, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+ }
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end render_bin_output_region_blocks */
@@ -2105,43 +2484,57 @@ render_bin_output_region_data_points
{
hsize_t *dims1 = NULL;
size_t type_size;
- hid_t mem_space = -1;
+ hid_t mem_space = H5I_INVALID_HID;
void *region_buf = NULL;
int ret_value = SUCCEED;
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) {
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- dims1[0] = (hsize_t)npoints;
- if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(region_space, dims1, NULL) >= 0) {
- ret_value = h5str_render_bin_output(stream, container, type_id, (char*)region_buf, (hsize_t)npoints);
- } /* end if(H5Sget_simple_extent_dims(region_space, dims1, NULL) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) */
- else
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
-
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
+ UNUSED(ptdata);
+
+ if (!(type_size = H5Tget_size(type_id))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ dims1[0] = (hsize_t)npoints;
+
+ if ((mem_space = H5Screate_simple(1, dims1, NULL)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_simple_extent_dims(region_space, dims1, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (h5str_render_bin_output(stream, container, type_id, (char *)region_buf, (hsize_t)npoints) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+done:
+ if (dims1)
+ HDfree(dims1);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (region_buf)
+ HDfree(region_buf);
return ret_value;
} /* end render_bin_output_region_data_points */
@@ -2161,248 +2554,343 @@ static int
render_bin_output_region_points
(FILE *stream, hid_t region_space, hid_t region_id, hid_t container)
{
- int ret_value = SUCCEED;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- int ndims;
- hid_t dtype;
- hid_t type_id;
-
- if((npoints = H5Sget_select_elem_npoints(region_space)) > 0) {
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims;
+ int ret_value = SUCCEED;
+
+ if ((npoints = H5Sget_select_elem_npoints(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (npoints > 0) {
/* Allocate space for the dimension array */
- if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) {
- alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- if(NULL != (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) {
- if(H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) >= 0) {
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
- ret_value = render_bin_output_region_data_points(stream, region_space, region_id,
- container, ndims, type_id, npoints, ptdata);
-
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Sget_select_elem_pointlist(region_space, (hsize_t) 0, (hsize_t) npoints, ptdata) >= 0) */
- else
- ret_value = -1;
+ alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- HDfree(ptdata);
- } /* end if(NULL != (ptdata = (hsize_t *)HDmalloc((size_t) alloc_size))) */
- else
- ret_value = -1;
- } /* end if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) */
- else
- ret_value = -1;
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) {
+ ret_value = FAIL;
+ goto done;
+ }
- } /* end if((npoints = H5Sget_select_elem_npoints(region_space)) > 0) */
- else
- ret_value = -1;
+ if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((dtype = H5Dget_type(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (render_bin_output_region_data_points(stream, region_space, region_id,
+ container, ndims, type_id, npoints, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+ }
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end render_bin_output_region_points */
int
h5str_dump_simple_dset
- (FILE *stream, hid_t dset, int binary_order)
+ (JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
{
- int ret_value = SUCCEED;
- hid_t f_space = -1; /* file data space */
- hsize_t elmtno; /* counter */
- size_t i; /* counter */
- int ndims;
- int carry; /* counter carry value */
- hsize_t zero[8]; /* vector of zeros */
- hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
+ hsize_t elmtno; /* counter */
+ hsize_t zero[8]; /* vector of zeros */
+ hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
+ size_t i; /* counter */
+ hid_t f_space = H5I_INVALID_HID; /* file data space */
+ int ndims;
+ int carry; /* counter carry value */
/* Print info */
- size_t p_type_nbytes; /* size of memory type */
- hsize_t p_nelmts; /* total selected elmts */
+ hsize_t p_nelmts; /* total selected elmts */
+ size_t p_type_nbytes; /* size of memory type */
/* Stripmine info */
- hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
- hsize_t sm_nbytes; /* bytes per stripmine */
- hsize_t sm_nelmts; /* elements per stripmine*/
- unsigned char *sm_buf = NULL; /* buffer for raw data */
- hid_t sm_space = -1; /* stripmine data space */
+ unsigned char *sm_buf = NULL; /* buffer for raw data */
+ hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
+ hsize_t sm_nbytes; /* bytes per stripmine */
+ hsize_t sm_nelmts; /* elements per stripmine */
+ hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */
/* Hyperslab info */
- hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
- hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
- hsize_t hs_nelmts; /* elements in request */
+ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
+ hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
+ hsize_t hs_nelmts; /* elements in request */
/* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
- hid_t p_type = -1;
- hid_t f_type = -1;
-
- if(dset < 0) return -1;
- f_type = H5Dget_type(dset);
- if (binary_order == 1)
- p_type = h5str_get_native_type(f_type);
- else if (binary_order == 2)
- p_type = h5str_get_little_endian_type(f_type);
- else if (binary_order == 3)
- p_type = h5str_get_big_endian_type(f_type);
- else
- p_type = H5Tcopy(f_type);
+ unsigned int vl_data = 0; /* contains VL datatypes */
+ hid_t p_type = H5I_INVALID_HID;
+ hid_t f_type = H5I_INVALID_HID;
- H5Tclose(f_type);
+ int ret_value = FAIL;
- if (p_type >= 0) {
- if((f_space = H5Dget_space(dset)) >= 0) {
- ndims = H5Sget_simple_extent_ndims(f_space);
+ if (dset < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_dump_simple_dset: dset ID < 0");
- if ((size_t)ndims <= (sizeof(sm_size)/sizeof(sm_size[0]))) {
- H5Sget_simple_extent_dims(f_space, total_size, NULL);
+ if ((f_type = H5Dget_type(dset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* calculate the number of elements we're going to print */
- p_nelmts = 1;
+ switch (binary_order) {
+ case 1:
+ {
+ if ((p_type = h5str_get_native_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (ndims > 0) {
- for (i = 0; i < ndims; i++)
- p_nelmts *= total_size[i];
- } /* end if */
+ break;
+ }
+
+ case 2:
+ {
+ if ((p_type = h5str_get_little_endian_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
- if (p_nelmts > 0) {
- /* Check if we have VL data in the dataset's datatype */
- if (h5str_detect_vlen(p_type) != 0)
- vl_data = 1;
+ case 3:
+ {
+ if ((p_type = h5str_get_big_endian_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ default:
+ {
+ if ((p_type = H5Tcopy(f_type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ break;
+ }
+ }
- /*
- * Determine the strip mine size and allocate a buffer. The strip mine is
- * a hyperslab whose size is manageable.
- */
- sm_nbytes = p_type_nbytes = H5Tget_size(p_type);
+ if ((f_space = H5Dget_space(dset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) {
+ if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Calculate the number of elements we're going to print */
+ p_nelmts = 1;
+
+ if (ndims > 0) {
+ for (i = 0; i < (size_t) ndims; i++)
+ p_nelmts *= total_size[i];
+ } /* end if */
+
+ if (p_nelmts > 0) {
+ /* Check if we have VL data in the dataset's datatype */
+ if (h5str_detect_vlen(p_type) != 0)
+ vl_data = 1;
+
+ /*
+ * Determine the strip mine size and allocate a buffer. The strip mine is
+ * a hyperslab whose size is manageable.
+ */
+ if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (ndims > 0) {
+ for (i = (size_t)ndims; i > 0; --i) {
+ hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
+ if ( size == 0 ) /* datum size > H5TOOLS_BUFSIZE */
+ size = 1;
+ sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size));
+ sm_nbytes *= sm_size[i - 1];
+ }
+ }
+
+ if (sm_nbytes > 0) {
+ if (NULL == (sm_buf = (unsigned char *) HDmalloc((size_t)sm_nbytes)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf");
+
+ sm_nelmts = sm_nbytes / p_type_nbytes;
+
+ if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* The stripmine loop */
+ HDmemset(hs_offset, 0, sizeof hs_offset);
+ HDmemset(zero, 0, sizeof zero);
+
+ for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
+ /* Calculate the hyperslab size */
if (ndims > 0) {
- for (i = (size_t)ndims; i > 0; --i) {
- hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
- if ( size == 0) /* datum size > H5TOOLS_BUFSIZE */
- size = 1;
- sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size));
- sm_nbytes *= sm_size[i - 1];
+ for (i = 0, hs_nelmts = 1; i < (size_t) ndims; i++) {
+ hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) ? (total_size[i] - hs_offset[i]) : (sm_size[i]));
+ hs_nelmts *= hs_size[i];
}
+
+ if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
+ else {
+ if (H5Sselect_all(f_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(sm_nbytes > 0) {
- sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes);
-
- sm_nelmts = sm_nbytes / p_type_nbytes;
- sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
-
- /* The stripmine loop */
- HDmemset(hs_offset, 0, sizeof hs_offset);
- HDmemset(zero, 0, sizeof zero);
-
- for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
- /* Calculate the hyperslab size */
- if (ndims > 0) {
- for (i = 0, hs_nelmts = 1; i < ndims; i++) {
- hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) ? (total_size[i] - hs_offset[i]) : (sm_size[i]));
- hs_nelmts *= hs_size[i];
- }
-
- H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL);
- H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL);
- }
- else {
- H5Sselect_all(f_space);
- H5Sselect_all(sm_space);
- hs_nelmts = 1;
- }
-
- /* Read the data */
- if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) >= 0) {
-
- if (binary_order == 99)
- ret_value = h5tools_dump_simple_data(stream, dset, p_type, sm_buf, hs_nelmts);
- else
- ret_value = h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts);
-
- /* Reclaim any VL memory, if necessary */
- if (vl_data)
- H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf);
- }
- else {
- ret_value = -1;
- break;
- }
-
- if(ret_value < 0) break;
-
- /* Calculate the next hyperslab offset */
- for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) {
- hs_offset[i - 1] += hs_size[i - 1];
-
- if (hs_offset[i - 1] == total_size[i - 1])
- hs_offset[i - 1] = 0;
- else
- carry = 0;
- }
- }
+ if (H5Sselect_all(sm_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(sm_buf)
- HDfree(sm_buf);
+ hs_nelmts = 1;
+ }
+
+ /* Read the data */
+ if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (binary_order == 99) {
+ if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ /* Reclaim any VL memory, if necessary */
+ if (vl_data) {
+ if (H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+ /* Calculate the next hyperslab offset */
+ for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) {
+ hs_offset[i - 1] += hs_size[i - 1];
+
+ if (hs_offset[i - 1] == total_size[i - 1])
+ hs_offset[i - 1] = 0;
+ else
+ carry = 0;
}
- if(sm_space >= 0 && H5Sclose(sm_space) < 0)
- ret_value = -1;
}
}
- if(f_space >= 0 && H5Sclose(f_space) < 0)
- ret_value = -1;
- } /* end if((f_space = H5Dget_space(dset)) >= 0) */
- else
- ret_value = -1;
-
- if (p_type >= 0)
- H5Tclose(p_type);
+ }
}
+
+ ret_value = SUCCEED;
+
+done:
+ if (sm_space >= 0)
+ H5Sclose(sm_space);
+ if (sm_buf)
+ HDfree(sm_buf);
+ if (f_space >= 0)
+ H5Sclose(f_space);
+ if (p_type >= 0)
+ H5Tclose(p_type);
+ if (f_type >= 0)
+ H5Tclose(f_type);
+
return ret_value;
} /* end h5str_dump_simple_dset */
+htri_t
+H5Tdetect_variable_str(hid_t tid) {
+ htri_t ret_val = 0;
+
+ if (H5Tget_class(tid) == H5T_COMPOUND) {
+ unsigned i;
+ unsigned nm = (unsigned)H5Tget_nmembers(tid);
+ for(i = 0; i < nm; i++) {
+ htri_t status = 0;
+ hid_t mtid = 0;
+ if((mtid = H5Tget_member_type(tid, i)) < 0)
+ return FAIL; /* exit immediately on error */
+ if((status = H5Tdetect_variable_str(mtid)) < 0)
+ return status; /* exit immediately on error */
+ ret_val |= status;
+ H5Tclose (mtid);
+ } /* end for */
+ } /* end if */
+ else
+ ret_val = H5Tis_variable_str(tid);
+
+ return ret_val;
+} /* end H5Tdetect_variable_str */
+
static int
h5tools_dump_simple_data
- (FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
+ (JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
{
- int ret_value = 0;
- int line_count;
- unsigned char *mem = (unsigned char*)_mem;
- size_t size; /* datum size */
- hsize_t i; /*element counter */
- h5str_t buffer; /*string into which to render */
-
- if((size = H5Tget_size(type)) > 0) {
- for (i = 0, line_count = 0; i < nelmts; i++, line_count++) {
- size_t bytes_in = 0; /* # of bytes to write */
- size_t bytes_wrote = 0; /* # of bytes written */
- void* memref = mem + i * size;
-
- /* Render the data element*/
- h5str_new(&buffer, 32 * size);
- bytes_in = h5str_sprintf(&buffer, container, type, memref, 0, 1);
- if(i > 0) {
- HDfprintf(stream, ", ");
- if (line_count >= H5TOOLS_TEXT_BLOCK) {
- line_count = 0;
- HDfprintf(stream, "\n");
- }
+ unsigned char *mem = (unsigned char *)_mem;
+ h5str_t buffer; /* string into which to render */
+ hsize_t i; /* element counter */
+ size_t size; /* datum size */
+ int line_count;
+ int ret_value = 0;
+
+ if (!(size = H5Tget_size(type)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, line_count = 0; i < nelmts; i++, line_count++) {
+ size_t bytes_in = 0; /* # of bytes to write */
+ void *memref = mem + i * size;
+
+ /* Render the data element*/
+ h5str_new(&buffer, 32 * size);
+
+ if (!buffer.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer");
+
+ if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (i > 0) {
+ if (HDfprintf(stream, ", ") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+ if (line_count >= H5TOOLS_TEXT_BLOCK) {
+ line_count = 0;
+
+ if (HDfprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
}
- HDfprintf(stream, "%s", buffer.s);
- h5str_free(&buffer);
- } /* end for (i = 0; i < nelmts... */
- HDfprintf(stream, "\n");
- } /* end if((size = H5Tget_size(tid)) > 0) */
- else
- ret_value = -1;
+ }
+
+ if (HDfprintf(stream, "%s", buffer.s) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+ h5str_free(&buffer);
+ } /* end for (i = 0; i < nelmts... */
+
+ if (HDfprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+done:
+ if (buffer.s)
+ h5str_free(&buffer);
return ret_value;
} /* end h5tools_dump_simple_data */
@@ -2421,53 +2909,68 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadComplex
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- int i;
- int n;
- char *rdata;
- size_t max_len = 0;
- size_t size;
- h5str_t h5str;
- hid_t p_type = -1;
- jstring jstr;
+ h5str_t h5str;
+ jstring jstr;
+ size_t size;
+ size_t i;
+ hid_t p_type = H5I_INVALID_HID;
+ jsize n;
+ char *readBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ if ((p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT);
size = (((H5Tget_size(mem_type_id))>(H5Tget_size(p_type))) ? (H5Tget_size(mem_type_id)) : (H5Tget_size(p_type)));
- H5Tclose(p_type);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- rdata = (char *)HDmalloc((size_t)n * size);
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5AreadComplex: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Aread(attr_id, mem_type_id, rdata);
- if (status < 0) {
- h5JNIFatalError(env, "H5AreadComplex: failed to read data");
- } /* end if */
- else {
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
- if (h5str.s == NULL) {
- h5JNIFatalError(env, "H5AreadComplex: failed to allocate string buf");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_sprintf(&h5str, attr_id, mem_type_id, rdata + ((size_t)i * size), 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- } /* end else */
- h5str_free(&h5str);
- } /* end else */
- HDfree(rdata);
- } /* end else */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadComplex: read buffer length <= 0");
+ }
+
+ if (NULL == (readBuf = (char *) HDmalloc((size_t)n * size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer");
+
+ if ((status = H5Aread(attr_id, mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ h5str_new(&h5str, 4 * size);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer");
+
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf)
+ HDfree(readBuf);
+ if (p_type >= 0)
+ H5Tclose(p_type);
+
return status;
}
/*
- * Copies the content of one dataset to another dataset
+ * Copies the content of one attribute to another attribute
* Class: hdf_hdf5lib_H5
* Method: H5Acopy
* Signature: (JJ)I
@@ -2476,62 +2979,51 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Acopy
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id)
{
- jbyte *buf;
- herr_t retVal = -1;
- hid_t src_did = (hid_t)src_id;
- hid_t dst_did = (hid_t)dst_id;
- hid_t tid = -1;
- hid_t sid = -1;
- hsize_t total_size = 0;
-
-
- sid = H5Aget_space(src_did);
- if (sid < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- tid = H5Aget_type(src_did);
- if (tid < 0) {
- H5Sclose(sid);
- h5libraryError(env);
- } /* end if */
- else {
- total_size = (hsize_t)H5Sget_simple_extent_npoints(sid) * (hsize_t)H5Tget_size(tid);
+ hssize_t npoints;
+ hsize_t total_size = 0;
+ size_t type_size;
+ jbyte *buf = NULL;
+ hid_t tid = H5I_INVALID_HID;
+ hid_t sid = H5I_INVALID_HID;
+ herr_t retVal = FAIL;
- H5Sclose(sid);
+ UNUSED(clss);
- buf = (jbyte *)HDmalloc( (size_t)total_size * sizeof(jbyte));
- if (buf == NULL) {
- H5Tclose(tid);
- h5outOfMemory( env, "H5Acopy: malloc failed");
- } /* end if */
- else {
- retVal = H5Aread(src_did, tid, buf);
- H5Tclose(tid);
+ if ((sid = H5Aget_space((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0) {
- HDfree(buf);
- h5libraryError(env);
- } /* end if */
- else {
- tid = H5Aget_type(dst_did);
- if (tid < 0) {
- HDfree(buf);
- h5libraryError(env);
- } /* end if */
- else {
- retVal = H5Awrite(dst_did, tid, buf);
+ if ((tid = H5Aget_type((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Tclose(tid);
- HDfree(buf);
+ if ((npoints = H5Sget_simple_extent_npoints(sid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(type_size = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer");
+
+ if ((retVal = H5Aread((hid_t)src_id, tid, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Tclose(tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ tid = H5I_INVALID_HID;
+
+ if ((tid = H5Aget_type((hid_t)dst_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((retVal = H5Awrite((hid_t)dst_id, tid, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (buf)
+ HDfree(buf);
+ if (tid >= 0)
+ H5Tclose(tid);
+ if (sid >= 0)
+ H5Sclose(sid);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Acopy */
@@ -2546,64 +3038,54 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Dcopy
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id)
{
- jbyte *buf;
- herr_t retVal = -1;
- hid_t src_did = (hid_t)src_id;
- hid_t dst_did = (hid_t)dst_id;
- hid_t tid = -1;
- hid_t sid = -1;
- hsize_t total_size = 0, total_allocated_size;
-
- total_allocated_size = H5Dget_storage_size(src_did);
- if (total_allocated_size <=0)
- return 0; // nothing to write;
-
- sid = H5Dget_space(src_did);
- if (sid < 0) {
- h5libraryError(env);
- return -1;
- } /* end if */
+ hssize_t npoints;
+ hsize_t total_size = 0, total_allocated_size;
+ size_t type_size;
+ jbyte *buf = NULL;
+ hid_t tid = H5I_INVALID_HID;
+ hid_t sid = H5I_INVALID_HID;
+ herr_t retVal = FAIL;
- tid = H5Dget_type(src_did);
- if (tid < 0) {
- H5Sclose(sid);
- h5libraryError(env);
- return -1;
- } /* end if */
+ UNUSED(clss);
- total_size = (hsize_t)H5Sget_simple_extent_npoints(sid) * (hsize_t)H5Tget_size(tid);
+ if (!(total_allocated_size = H5Dget_storage_size((hid_t)src_id)))
+ return 0; // nothing to write
- H5Sclose(sid);
+ if ((sid = H5Dget_space((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- buf = (jbyte*)HDmalloc((size_t)total_size * sizeof(jbyte));
- if (buf == NULL) {
- H5Tclose(tid);
- h5outOfMemory(env, "H5Dcopy: malloc failed");
- return -1;
- } /* end if */
+ if ((tid = H5Dget_type((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Dread(src_did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- H5Tclose(tid);
+ if ((npoints = H5Sget_simple_extent_npoints(sid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(type_size = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (retVal < 0) {
- HDfree(buf);
- h5libraryError(env);
- return (jint)retVal;
- } /* end if */
+ if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer");
- tid = H5Dget_type(dst_did);
- if (tid < 0) {
- HDfree(buf);
- h5libraryError(env);
- return -1;
- } /* end if */
- retVal = H5Dwrite(dst_did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- H5Tclose(tid);
- HDfree(buf);
+ if ((retVal = H5Dread((hid_t)src_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0) {
- h5libraryError(env);
- } /* end if */
+ if (H5Tclose(tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ tid = H5I_INVALID_HID;
+
+ if ((tid = H5Dget_type((hid_t)dst_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((retVal = H5Dwrite((hid_t)dst_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (buf)
+ HDfree(buf);
+ if (tid >= 0)
+ H5Tclose(tid);
+ if (sid >= 0)
+ H5Sclose(sid);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dcopy */
@@ -2613,7 +3095,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy
//
//
// Add these methods so that we don't need to call H5Gget_objtype_by_idx
-// in a loop to get information for all the object in a group, which takes
+// in a loop to get information for all the objects in a group, which takes
// a lot of time to finish if the number of objects is more than 10,000
//
/////////////////////////////////////////////////////////////////////////////////
@@ -2648,152 +3130,103 @@ typedef struct info_all
* Method: H5Gget_obj_info_full
* Signature: (JLjava/lang/String;[Ljava/lang/String;[I[I[J[JIII)I
*/
+/*
+ * NOTE: This is a dangerous call! The caller can supply any value they'd like
+ * for 'n' and if it exceeds the number of links in the group, we will most likely
+ * end up overwriting memory heap-tracking info.
+ */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full
(JNIEnv *env, jclass clss, jlong loc_id, jstring group_name,
jobjectArray objName, jintArray oType, jintArray lType, jlongArray fNo,
jlongArray oRef, jint n, jint indx_type, jint indx_order)
{
- herr_t ret_val = -1;
- const char *gName = NULL;
- char **oName = NULL;
- jboolean isCopy;
- jstring str;
- jint *otarr;
- jint *ltarr;
- jlong *refP;
- jlong *fnoP;
- unsigned long *refs=NULL;
- unsigned long *fnos=NULL;
- hid_t gid = (hid_t)loc_id;
- int i;
- int indexType = indx_type;
- int indexOrder = indx_order;
-
- if (oType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: oType is NULL");
+ unsigned long *refs = NULL;
+ unsigned long *fnos = NULL;
+ const char *gName = NULL;
+ char **oName = NULL;
+ jboolean isCopy;
+ jstring str;
+ jint *otarr = NULL;
+ jint *ltarr = NULL;
+ jlong *refP = NULL;
+ jlong *fnoP = NULL;
+ hid_t gid = (hid_t)loc_id;
+ int i;
+ int indexType = indx_type;
+ int indexOrder = indx_order;
+ herr_t ret_val = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == oType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oType is NULL");
+ if (NULL == lType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: lType is NULL");
+ if (NULL == oRef)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oRef is NULL");
+ if (NULL == fNo)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: fNo is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_full: oType not pinned");
+ PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_full: lType not pinned");
+ PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_full: oRef not pinned");
+ PIN_LONG_ARRAY(ENVONLY, fNo, fnoP, &isCopy, "H5Gget_obj_info_full: fNo not pinned");
+
+ if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name");
+
+ if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for ref. info");
+
+ if (NULL == (fnos = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for file number info");
+
+ if (group_name) {
+ PIN_JAVA_STRING(ENVONLY, group_name, gName, &isCopy, "H5Gget_obj_info_full: group_name not pinned");
+
+ if ((gid = H5Gopen2((hid_t)loc_id, gName, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
- else if (lType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: lType is NULL");
- }
- else if (oRef == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: oRef is NULL");
- }
- else if (fNo == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: fNo is NULL");
- }
- else {
- otarr = ENVPTR->GetIntArrayElements(ENVPAR oType, &isCopy);
- if (otarr == NULL) {
- h5JNIFatalError(env, "H5Gget_obj_info_full: otype not pinned");
- return -1;
- } /* end if */
- ltarr = ENVPTR->GetIntArrayElements(ENVPAR lType, &isCopy);
- if (ltarr == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: ltype not pinned");
- return -1;
- } /* end if */
- refP = ENVPTR->GetLongArrayElements(ENVPAR oRef, &isCopy);
- if (refP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: oRef not pinned");
- return -1;
- } /* end if */
- fnoP = ENVPTR->GetLongArrayElements(ENVPAR fNo, &isCopy);
- if (fnoP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: fNo not pinned");
- return -1;
- } /* end if */
- oName = (char **)HDcalloc((size_t)n, sizeof(*oName));
- if (!oName) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: oName not allocated");
- return -1;
- } /* end if */
- refs = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- fnos = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- if (!refs || !fnos) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- if (refs)
- HDfree(refs);
- if (fnos)
- HDfree(fnos);
- h5JNIFatalError(env, "H5Gget_obj_info_full: result arrays not allocated");
- return -1;
- } /* end if */
-
- if (group_name != NULL) {
- gid = -1;
- gName = ENVPTR->GetStringUTFChars(ENVPAR group_name, &isCopy);
- if (gName != NULL) {
- gid = H5Gopen2((hid_t)loc_id, gName, H5P_DEFAULT);
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR group_name, gName);
- } /* end if */
- if(gid < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- HDfree(fnos);
- h5JNIFatalError(env, "H5Gget_obj_info_full: could not get group identifier");
- return -1;
- } /* end if */
- } /* end if */
+ if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: retrieval of object info failed");
- ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder);
+ for (i = 0; i < n; i++) {
+ refP[i] = (jlong)refs[i];
+ fnoP[i] = (jlong)fnos[i];
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, 0);
+ if (oName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (group_name != NULL)
- H5Gclose(gid);
+ ENVPTR->SetObjectArrayElement(ENVONLY, objName, i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- HDfree(fnos);
- h5libraryError(env);
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
} /* end if */
- else {
- for (i=0; i<n; i++) {
- refP[i] = (jlong)refs[i];
- } /* end for */
- HDfree(refs);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, 0);
-
- for (i=0; i<n; i++) {
- fnoP[i] = (jlong)fnos[i];
- } /* end for */
- HDfree(fnos);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, 0);
-
- for (i=0; i<n; i++) {
- if (*(oName+i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(oName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR objName, i, (jobject)str);
- } /* end if */
- } /* for (i=0; i<n; i++)*/
- h5str_array_free(oName, (size_t)n);
- } /* end else */
- } /* end else */
+ }
+
+done:
+ if (gName) {
+ H5Gclose(gid);
+ UNPIN_JAVA_STRING(ENVONLY, group_name, gName);
+ }
+ if (fnos)
+ HDfree(fnos);
+ if (refs)
+ HDfree(refs);
+ if (oName)
+ h5str_array_free(oName, (size_t)n);
+ if (fnoP)
+ UNPIN_LONG_ARRAY(ENVONLY, fNo, fnoP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (refP)
+ UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (ltarr)
+ UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0);
+ if (otarr)
+ UNPIN_INT_ARRAY(ENVONLY, oType, otarr, (ret_val < 0) ? JNI_ABORT : 0);
+
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full */
@@ -2802,97 +3235,73 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full
* Method: H5Gget_obj_info_max
* Signature: (J[Ljava/lang/String;[I[I[JJI)I
*/
+/*
+ * NOTE: This is a dangerous call! The caller can supply any value they'd like
+ * for 'n' and if it exceeds the number of links reachable from the group, we
+ * will most likely end up overwriting memory heap-tracking info.
+ */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max
(JNIEnv *env, jclass clss, jlong loc_id, jobjectArray objName,
jintArray oType, jintArray lType, jlongArray oRef, jlong maxnum, jint n)
{
- herr_t ret_val = -1;
- char **oName=NULL;
- jboolean isCopy;
- jstring str;
- jint *otarr;
- jint *ltarr;
- jlong *refP;
- unsigned long *refs;
- int i;
-
- if (oType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: oType is NULL");
- } /* end if */
- else if (lType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: lType is NULL");
- } /* end else if */
- else if (oRef == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: oRef is NULL");
- } /* end else if */
- else {
- otarr = ENVPTR->GetIntArrayElements(ENVPAR oType, &isCopy);
- if (otarr == NULL) {
- h5JNIFatalError(env, "H5Gget_obj_info_max: otype not pinned");
- return -1;
- } /* end if */
+ unsigned long *refs = NULL;
+ jboolean isCopy;
+ jstring str;
+ jlong *refP = NULL;
+ char **oName = NULL;
+ jint *otarr = NULL;
+ jint *ltarr = NULL;
+ int i;
+ herr_t ret_val = FAIL;
- ltarr = ENVPTR->GetIntArrayElements(ENVPAR lType, &isCopy);
- if (ltarr == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: ltype not pinned");
- return -1;
- } /* end if */
+ UNUSED(clss);
- refP = ENVPTR->GetLongArrayElements(ENVPAR oRef, &isCopy);
- if (refP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: oRef not pinned");
- return -1;
- } /* end if */
+ if (NULL == oType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oType is NULL");
+ if (NULL == lType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: lType is NULL");
+ if (NULL == oRef)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oRef is NULL");
- oName = (char **)HDcalloc((size_t)n, sizeof(*oName));
- if (!oName) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: oName not allocated");
- return -1;
- } /* end if */
- refs = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- if (!refs) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- h5JNIFatalError(env, "H5Gget_obj_info_max: result array not allocated");
- return -1;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_max: oType not pinned");
+ PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_max: lType not pinned");
+ PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_max: oRef not pinned");
- ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int*)otarr, (int*)ltarr, refs, maxnum );
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, 0);
+ if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name");
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- h5libraryError(env);
- } /* end if */
- else {
- for (i=0; i<n; i++) {
- refP[i] = (jlong) refs[i];
- } /* end for */
- HDfree(refs);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, 0);
-
- for (i=0; i<n; i++) {
- if (*(oName+i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(oName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR objName, i, (jobject)str);
- }
- } /* for (i=0; i<n; i++)*/
+ if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for ref. info");
- h5str_array_free(oName, (size_t)n);
- } /* end else */
- } /* end else */
+ if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, refs, maxnum)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: retrieval of object info failed");
+
+ for (i = 0; i < n; i++) {
+ refP[i] = (jlong) refs[i];
+
+ if (oName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, objName, i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
+ }
+ } /* end for */
+
+done:
+ if (refs)
+ HDfree(refs);
+ if (oName)
+ h5str_array_free(oName, (size_t)n);
+ if (refP)
+ UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (ltarr)
+ UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0);
+ if (otarr)
+ UNPIN_INT_ARRAY(ENVONLY, oType, otarr, (ret_val < 0) ? JNI_ABORT : 0);
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max */
@@ -2902,6 +3311,7 @@ H5Gget_obj_info_full
(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder)
{
info_all_t info;
+
info.objname = objname;
info.otype = otype;
info.ltype = ltype;
@@ -2910,11 +3320,22 @@ H5Gget_obj_info_full
info.objno = objno;
info.count = 0;
- if(H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) {
- /* iterate failed, try normal alphabetical order */
- if(H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0)
+ if (H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) {
+ /*
+ * Reset info stats; most importantly, reset the count.
+ */
+ info.objname = objname;
+ info.otype = otype;
+ info.ltype = ltype;
+ info.idxnum = 0;
+ info.fno = fno;
+ info.objno = objno;
+ info.count = 0;
+
+ /* Iteration failed, try normal alphabetical order */
+ if (H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0)
return -1;
- } /* end if */
+ }
return info.count;
} /* end H5Gget_obj_info_full */
@@ -2924,6 +3345,7 @@ H5Gget_obj_info_max
(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *objno, long maxnum)
{
info_all_t info;
+
info.objname = objname;
info.otype = otype;
info.ltype = ltype;
@@ -2931,7 +3353,7 @@ H5Gget_obj_info_max
info.objno = objno;
info.count = 0;
- if(H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0)
+ if (H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0)
return -1;
return info.count;
@@ -2941,75 +3363,87 @@ herr_t
obj_info_all
(hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data)
{
- int type = -1;
- hid_t oid = -1;
- herr_t retVal = -1;
- info_all_t *datainfo = (info_all_t*)op_data;
+ info_all_t *datainfo = (info_all_t *)op_data;
H5O_info_t object_info;
+ htri_t object_exists;
+ size_t str_len;
- retVal = H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT);
+ datainfo->otype[datainfo->count] = -1;
+ datainfo->ltype[datainfo->count] = -1;
+ datainfo->objno[datainfo->count] = (unsigned long)-1;
- if (retVal < 0) {
- *(datainfo->otype+datainfo->count) = -1;
- *(datainfo->ltype+datainfo->count) = -1;
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- HDstrcpy(*(datainfo->objname+datainfo->count), name);
- *(datainfo->objno+datainfo->count) = (unsigned long)-1;
- } /* end if */
- else {
- *(datainfo->otype+datainfo->count) = object_info.type;
- *(datainfo->ltype+datainfo->count) = info->type;
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- HDstrcpy(*(datainfo->objname+datainfo->count), name);
-
- *(datainfo->fno+datainfo->count) = object_info.fileno;
- *(datainfo->objno+datainfo->count) = (unsigned long)object_info.addr;
- /*
- if(info->type==H5L_TYPE_HARD)
- *(datainfo->objno+datainfo->count) = (unsigned long)info->u.address;
- else
- *(datainfo->objno+datainfo->count) = info->u.val_size;
- */
- } /* end else */
+ str_len = HDstrlen(name);
+ if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1)))
+ goto done;
+
+ HDstrncpy(datainfo->objname[datainfo->count], name, str_len);
+ (datainfo->objname[datainfo->count])[str_len] = '\0';
+
+ if ((object_exists = H5Oexists_by_name(loc_id, name, H5P_DEFAULT)) < 0)
+ goto done;
+
+ if (object_exists) {
+ if (H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0)
+ goto done;
+
+ datainfo->otype[datainfo->count] = object_info.type;
+ datainfo->ltype[datainfo->count] = info->type;
+ datainfo->fno[datainfo->count] = object_info.fileno;
+ datainfo->objno[datainfo->count] = (unsigned long)object_info.addr;
+ }
+ /*
+ if (info->type == H5L_TYPE_HARD)
+ datainfo->objno[datainfo->count] = (unsigned long)info->u.address;
+ else
+ datainfo->objno[datainfo->count] = info->u.val_size;
+ */
+
+done:
datainfo->count++;
- return 0;
+ return SUCCEED;
} /* end obj_info_all */
herr_t
obj_info_max
(hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data)
{
- int type = -1;
- herr_t retVal = 0;
- info_all_t *datainfo = (info_all_t*)op_data;
+ info_all_t *datainfo = (info_all_t *)op_data;
H5O_info_t object_info;
+ size_t str_len;
- retVal = H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL);
- if (retVal < 0) {
- *(datainfo->otype+datainfo->count) = -1;
- *(datainfo->ltype+datainfo->count) = -1;
- *(datainfo->objname+datainfo->count) = NULL;
- *(datainfo->objno+datainfo->count) = (unsigned long)-1;
- return 1;
- } /* end if */
- else {
- *(datainfo->otype+datainfo->count) = object_info.type;
- *(datainfo->ltype+datainfo->count) = info->type;
- /* this will be freed by h5str_array_free(oName, n)*/
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- strcpy(*(datainfo->objname+datainfo->count), name);
- if(info->type==H5L_TYPE_HARD)
- *(datainfo->objno+datainfo->count) = (unsigned long)info->u.address;
- else
- *(datainfo->objno+datainfo->count) = info->u.val_size;
- } /* end else */
- datainfo->count++;
- if(datainfo->count < (int)datainfo->idxnum)
- return 0;
+ datainfo->otype[datainfo->count] = -1;
+ datainfo->ltype[datainfo->count] = -1;
+ datainfo->objname[datainfo->count] = NULL;
+ datainfo->objno[datainfo->count] = (unsigned long)-1;
+
+ /* This will be freed by h5str_array_free(oName, n) */
+ str_len = HDstrlen(name);
+ if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1)))
+ goto done;
+
+ HDstrncpy(datainfo->objname[datainfo->count], name, str_len);
+ (datainfo->objname[datainfo->count])[str_len] = '\0';
+
+ if (H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL) < 0)
+ goto done;
+
+ datainfo->otype[datainfo->count] = object_info.type;
+ datainfo->ltype[datainfo->count] = info->type;
+
+ if (info->type == H5L_TYPE_HARD)
+ datainfo->objno[datainfo->count] = (unsigned long)info->u.address;
else
+ datainfo->objno[datainfo->count] = info->u.val_size;
+
+done:
+ datainfo->count++;
+
+ if (datainfo->count >= (int)datainfo->idxnum)
return 1;
+ else
+ return SUCCEED;
} /* end obj_info_max */
/*
@@ -3019,70 +3453,64 @@ obj_info_max
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5export_1dataset
- (JNIEnv *env, jclass cls, jstring file_export_name, jstring file_name, jstring object_path, jint binary_order)
+ (JNIEnv *env, jclass clss, jstring file_export_name, jstring file_name, jstring object_path, jint binary_order)
{
- herr_t status = -1;
- herr_t ret_val = -1;
- hid_t file_id = -1;
- hid_t dataset_id = -1;
- FILE *stream;
- const char *file_export;
- const char *object_name;
- const char *fileName;
- jboolean isCopy2;
-
- if (file_export_name == NULL) {
- h5nullArgument(env, "HDF5Library_export_data: file_export_name is NULL");
- } /* end if */
- else if (object_path == NULL) {
- h5nullArgument(env, "HDF5Library_export_data: object_path is NULL");
- } /* end else if */
- else {
- PIN_JAVA_STRING(file_name, fileName);
- if (fileName != NULL) {
- file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT);
-
- UNPIN_JAVA_STRING(file_name, fileName);
-
- if (file_id < 0) {
- /* throw exception */
- h5libraryError(env);
- } /* end if */
- else {
- object_name = ENVPTR->GetStringUTFChars(ENVPAR object_path, &isCopy2);
- if (object_name == NULL) {
- h5JNIFatalError( env, "H5Dopen: object name not pinned");
- } /* end if */
- else {
- dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT);
+ const char *file_export = NULL;
+ const char *object_name = NULL;
+ const char *fileName = NULL;
+ jboolean isCopy;
+ herr_t ret_val = FAIL;
+ hid_t file_id = H5I_INVALID_HID;
+ hid_t dataset_id = H5I_INVALID_HID;
+ FILE *stream = NULL;
- ENVPTR->ReleaseStringUTFChars(ENVPAR object_path, object_name);
+ UNUSED(clss);
- if (dataset_id < 0) {
- H5Fclose(file_id);
- h5libraryError(env);
- } /* end if */
- else {
- file_export = ENVPTR->GetStringUTFChars(ENVPAR file_export_name, 0);
- stream = HDfopen(file_export, "w+");
- ENVPTR->ReleaseStringUTFChars(ENVPAR file_export_name, file_export);
+ if (NULL == file_export_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL");
- ret_val = h5str_dump_simple_dset(stream, dataset_id, binary_order);
+ if (NULL == file_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_name is NULL");
- if (stream)
- HDfclose(stream);
+ if (NULL == object_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL");
- H5Dclose(dataset_id);
+ PIN_JAVA_STRING(ENVONLY, file_name, fileName, NULL, "H5export_dataset: file name not pinned");
- H5Fclose(file_id);
+ if ((file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, object_path, object_name, &isCopy, "H5export_dataset: object_path not pinned");
+
+ if ((dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, "H5export_dataset: file_export name not pinned");
+
+ if (NULL == (stream = HDfopen(file_export, "w+")))
+ H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed");
+
+ if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
+
+ if (stream) {
+ HDfclose(stream);
+ stream = NULL;
+ }
+
+done:
+ if (stream)
+ HDfclose(stream);
+ if (file_export)
+ UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export);
+ if (object_name)
+ UNPIN_JAVA_STRING(ENVONLY, object_path, object_name);
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, fileName);
+ if (dataset_id >= 0)
+ H5Dclose(dataset_id);
+ if (file_id >= 0)
+ H5Fclose(file_id);
} /* end Java_hdf_hdf5lib_H5_H5export_1dataset */
#ifdef __cplusplus
diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h
index 23bc424..e5f0d0b 100644
--- a/java/src/jni/h5util.h
+++ b/java/src/jni/h5util.h
@@ -35,18 +35,29 @@ typedef struct h5str_t {
size_t max; /* the allocated size of the string */
} h5str_t;
-extern void h5str_new (h5str_t *str, size_t len);
-extern void h5str_free (h5str_t *str);
-extern void h5str_resize (h5str_t *str, size_t new_len);
-extern char* h5str_append (h5str_t *str, const char* cstr);
-extern size_t h5str_vlsprintf(h5str_t *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
-extern size_t h5str_sprintf(h5str_t *str, hid_t container, hid_t tid, void *buf, int ptrlen, int expand_data);
-extern size_t h5str_vlsconvert(char *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
-extern size_t h5str_convert(char **str, hid_t container, hid_t tid, hvl_t *buf, int ptroffset, int expand_data);
+extern void h5str_new(h5str_t *str, size_t len);
+extern void h5str_free(h5str_t *str);
+extern void h5str_resize(h5str_t *str, size_t new_len);
+extern char* h5str_append(h5str_t *str, const char* cstr);
+extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset);
+extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data);
extern void h5str_array_free(char **strs, size_t len);
-extern int h5str_dump_simple_dset(FILE *stream, hid_t dset, int binary_order);
-extern int h5str_dump_region_blocks_data(h5str_t *str, hid_t region, hid_t region_obj);
-extern int h5str_dump_region_points_data(h5str_t *str, hid_t region, hid_t region_obj);
+extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order);
+extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+
+extern htri_t H5Tdetect_variable_str(hid_t tid);
+
+/*
+ * Symbols used to format the output of h5str_sprintf and
+ * to interpret the input to h5str_convert.
+ */
+#define H5_COMPOUND_BEGIN_INDICATOR "{"
+#define H5_COMPOUND_END_INDICATOR "}"
+#define H5_ARRAY_BEGIN_INDICATOR "["
+#define H5_ARRAY_END_INDICATOR "]"
+#define H5_VLEN_BEGIN_INDICATOR "("
+#define H5_VLEN_END_INDICATOR ")"
/*
* Class: hdf_hdf5lib_H5
diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c
index 89ea703..92e456e 100644
--- a/java/src/jni/h5vlImp.c
+++ b/java/src/jni/h5vlImp.c
@@ -21,9 +21,9 @@
extern "C" {
#endif /* __cplusplus */
-#include "hdf5.h"
#include <jni.h>
#include <stdlib.h>
+#include "hdf5.h"
#include "h5jni.h"
#include "h5vlImp.h"
@@ -36,18 +36,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name
(JNIEnv *env, jclass clss, jobject connector_name, jlong vipl_id)
{
- hid_t status = -1;
- const char *vlName;
+ const char *volName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- status = H5VLregister_connector_by_name(vlName, (hid_t)vipl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ if (NULL == connector_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLregister_connector_by_name: VOL connector name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLregister_connector_by_name: VOL connector name not pinned");
+
+ if ((status = H5VLregister_connector_by_name(volName, (hid_t)vipl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name */
@@ -61,11 +65,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
(JNIEnv *env, jclass clss, jint connector_value, jlong vipl_id)
{
- hid_t status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id);
+ hid_t status = H5I_INVALID_HID;
+
+ UNUSED(clss);
- if (status < 0)
- h5libraryError(env);
+ if ((status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value */
@@ -78,20 +85,24 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *env, jclass clss, jobject connector_name)
{
+ const char *volName = NULL;
htri_t bval = JNI_FALSE;
- const char *vlName;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- bval = H5VLis_connector_registered(vlName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ if (NULL == connector_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLis_connector_registered: VOL connector name is NULL");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLis_connector_registered: VOL connector name not pinned");
+
+ if ((bval = H5VLis_connector_registered(volName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered */
@@ -105,18 +116,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1id
(JNIEnv *env, jclass clss, jobject connector_name)
{
- hid_t status = -1;
- const char *vlName;
+ const char *volName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- status = H5VLget_connector_id(vlName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ if (NULL == connector_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id: VOL connector name is NULL");
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id: VOL connector name not pinned");
+
+ if ((status = H5VLget_connector_id(volName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */
@@ -131,41 +146,31 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1name
(JNIEnv *env, jclass clss, jlong object_id)
{
- char *vlName;
- ssize_t buf_size;
- ssize_t status;
+ ssize_t buf_size, status;
+ char *volName = NULL;
jstring str = NULL;
- /* get the length of the comment */
- buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0);
- if (buf_size < 0) {
- H5Eprint2(H5E_DEFAULT, NULL);
-
- h5badArgument(env, "H5VLget_connector_name: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- vlName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (vlName == NULL) {
- /* exception -- out of memory */
- h5outOfMemory(env, "H5VLget_connector_name: malloc failed");
- } /* end if */
- else {
- status = H5VLget_connector_name((hid_t)object_id, vlName, (size_t)buf_size);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR vlName);
- if (str == NULL) {
- h5JNIFatalError(env, "H5VLget_connector_name: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(vlName);
- }
- } /* end else if */
+ UNUSED(clss);
+
+ /* Get the length of the comment */
+ if ((buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size > 0) {
+ if (NULL == (volName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer");
+
+ if ((status = H5VLget_connector_name((hid_t)object_id, volName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ volName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, volName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (volName)
+ HDfree(volName);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1name */
@@ -179,10 +184,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLclose
(JNIEnv *env, jclass clss, jlong connector_id)
{
- herr_t retValue = H5VLclose((hid_t)connector_id);
+ herr_t retValue = FAIL;
+
+ UNUSED(clss);
+
+ if ((retValue = H5VLclose((hid_t)connector_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retValue < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5VLclose */
/*
@@ -194,10 +204,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLunregister_1connector
(JNIEnv *env, jclass clss, jlong connector_id)
{
- herr_t retValue = H5VLunregister_connector((hid_t)connector_id);
+ herr_t retValue = FAIL;
+
+ UNUSED(clss);
+
+ if ((retValue = H5VLunregister_connector((hid_t)connector_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retValue < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5VLunregister_1connector */
diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h
index af824a9..207efa5 100644
--- a/java/src/jni/h5vlImp.h
+++ b/java/src/jni/h5vlImp.h
@@ -44,7 +44,7 @@ Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
* Signature: (Ljava/lang/String;)Z
*/
JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5VLis_connector_registered
+Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *, jclass, jobject);
/*
diff --git a/java/src/jni/h5zImp.c b/java/src/jni/h5zImp.c
index a5e6cd8..a1c8517 100644
--- a/java/src/jni/h5zImp.c
+++ b/java/src/jni/h5zImp.c
@@ -36,12 +36,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zunregister
(JNIEnv *env, jclass clss, jint filter)
{
- herr_t retValue = H5Zunregister((H5Z_filter_t)filter);
+ herr_t retVal = FAIL;
- if (retValue < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retValue;
+ if ((retVal = H5Zunregister((H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zunregister */
/*
@@ -53,12 +56,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zfilter_1avail
(JNIEnv *env, jclass clss, jint filter)
{
- herr_t retValue = H5Zfilter_avail((H5Z_filter_t)filter);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- if (retValue < 0)
- h5libraryError(env);
+ if ((retVal = H5Zfilter_avail((H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)retValue;
+done:
+ return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zfilter_1avail */
/*
@@ -73,9 +79,12 @@ Java_hdf_hdf5lib_H5_H5Zget_1filter_1info
{
unsigned int flags = 0;
- if (H5Zget_filter_info ((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Zget_filter_info((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)flags;
} /* end Java_hdf_hdf5lib_H5_H5Zget_1filter_1info */
diff --git a/java/src/jni/nativeData.c b/java/src/jni/nativeData.c
index 33f4953..947f843 100644
--- a/java/src/jni/nativeData.c
+++ b/java/src/jni/nativeData.c
@@ -50,54 +50,49 @@ JNIEXPORT jintArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jintArray rarray = NULL;
- int blen;
- jint *iarray;
- jboolean bb;
- char *bp;
- jint *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToInt: bdata is NULL?");
- } /* end if */
- else {
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToInt: pin failed");
- } /* end if */
- else {
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jint);
- rarray = ENVPTR->NewIntArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToInt" );
- return NULL;
- } /* end if */
-
- iarray = ENVPTR->GetIntArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: pin iarray failed");
- return NULL;
- } /* end if */
-
- bp = (char *)barr;
- iap = iarray;
- for (ii = 0; ii < len; ii++) {
- *iap = *(jint *)bp;
- iap++;
- bp += sizeof(jint);
- } /* end for */
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR rarray,iarray, 0);
- } /* end else */
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- } /* end else */
+ jintArray rarray = NULL;
+ jboolean bb;
+ jbyte *barr = NULL;
+ jint *iarray = NULL;
+ jint *iap = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToInt: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToInt: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jint);
+
+ if (NULL == (rarray = ENVPTR->NewIntArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_INT_ARRAY(ENVONLY, rarray, iarray, &bb, "byteToInt: int array not pinned");
+
+ bp = (char *)barr;
+ iap = iarray;
+ for (ii = 0; ii < len; ii++) {
+ *iap = *(jint *)bp;
+ iap++;
+ bp += sizeof(jint);
+ } /* end for */
+
+done:
+ if (iarray)
+ UNPIN_INT_ARRAY(ENVONLY, rarray, iarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
+
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B */
@@ -106,40 +101,34 @@ JNIEXPORT jfloatArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jfloatArray rarray;
- int blen;
- jfloat *farray;
- jboolean bb;
- char *bp;
- jfloat *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToFloat: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToFloat: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jfloat);
- rarray = ENVPTR->NewFloatArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToFloat" );
- return NULL;
- } /* end if */
- farray = ENVPTR->GetFloatArrayElements(ENVPAR rarray,&bb);
- if (farray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToFloat: pin farray failed");
- return NULL;
- } /* end if */
+ jfloatArray rarray;
+ jboolean bb;
+ jfloat *farray = NULL;
+ jfloat *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToFloat: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToFloat: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jfloat);
+
+ if (NULL == (rarray = ENVPTR->NewFloatArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_FLOAT_ARRAY(ENVONLY, rarray, farray, &bb, "byteToFloat: float array not pinned");
bp = (char *)barr;
iap = farray;
@@ -149,8 +138,11 @@ Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B
bp += sizeof(jfloat);
} /* end for */
- ENVPTR->ReleaseFloatArrayElements(ENVPAR rarray,farray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (farray)
+ UNPIN_FLOAT_ARRAY(ENVONLY, rarray, farray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B */
@@ -160,42 +152,34 @@ JNIEXPORT jshortArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jshortArray rarray;
- int blen;
- jshort *sarray;
- jboolean bb;
- char *bp;
- jshort *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToShort: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToShort: pin failed");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jshort);
- rarray = ENVPTR->NewShortArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToShort" );
- return NULL;
- } /* end if */
-
- sarray = ENVPTR->GetShortArrayElements(ENVPAR rarray,&bb);
- if (sarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToShort: pin sarray failed");
- return NULL;
- } /* end if */
+ jshortArray rarray;
+ jboolean bb;
+ jshort *sarray = NULL;
+ jshort *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToShort: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToShort: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jshort);
+
+ if (NULL == (rarray = ENVPTR->NewShortArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_SHORT_ARRAY(ENVONLY, rarray, sarray, &bb, "byteToShort: short array not pinned");
bp = (char *)barr;
iap = sarray;
@@ -205,53 +189,48 @@ Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B
bp += sizeof(jshort);
} /* end for */
- ENVPTR->ReleaseShortArrayElements(ENVPAR rarray,sarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (sarray)
+ UNPIN_SHORT_ARRAY(ENVONLY, rarray, sarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B */
-
/* returns long [] */
JNIEXPORT jlongArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jlongArray rarray;
- int blen;
- jlong *larray;
- jboolean bb;
- char *bp;
- jlong *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToLong: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToLong: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jlong);
- rarray = ENVPTR->NewLongArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToLong" );
- return NULL;
- } /* end if */
-
- larray = ENVPTR->GetLongArrayElements(ENVPAR rarray,&bb);
- if (larray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToLong: pin larray failed");
- return NULL;
- } /* end if */
+ jlongArray rarray;
+ jboolean bb;
+ jlong *larray = NULL;
+ jlong *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToLong: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToLong: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jlong);
+
+ if (NULL == (rarray = ENVPTR->NewLongArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_LONG_ARRAY(ENVONLY, rarray, larray, &bb, "byteToLong: long array not pinned");
bp = (char *)barr;
iap = larray;
@@ -260,53 +239,49 @@ Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B
iap++;
bp += sizeof(jlong);
} /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR rarray,larray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+
+done:
+ if (larray)
+ UNPIN_LONG_ARRAY(ENVONLY, rarray, larray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B */
-
/* returns double [] */
JNIEXPORT jdoubleArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jdoubleArray rarray;
- int blen;
- jdouble *darray;
- jboolean bb;
- char *bp;
- jdouble *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToDouble: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToDouble: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jdouble);
- rarray = ENVPTR->NewDoubleArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToDouble" );
- return NULL;
- } /* end if */
-
- darray = ENVPTR->GetDoubleArrayElements(ENVPAR rarray,&bb);
- if (darray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToDouble: pin darray failed");
- return NULL;
- } /* end if */
+ jdoubleArray rarray;
+ jboolean bb;
+ jdouble *darray = NULL;
+ jdouble *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToDouble: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToDouble: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jdouble);
+
+ if (NULL == (rarray = ENVPTR->NewDoubleArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, &bb, "byteToDouble: double array not pinned");
bp = (char *)barr;
iap = darray;
@@ -316,59 +291,50 @@ Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B
bp += sizeof(jdouble);
} /* end for */
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rarray,darray,0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (darray)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B */
-
/* returns int [] */
JNIEXPORT jintArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jintArray rarray;
- int blen;
- jint *iarray;
- jint *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToInt: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToInt: pin failed");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jint))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: getLen failed");
- return NULL;
- } /* end if */
+ jintArray rarray;
+ jboolean bb;
+ jint *iarray = NULL;
+ jint *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToInt: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToInt: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jint))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewIntArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToInt" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewIntArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetIntArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: pin iarray failed");
- return NULL;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, rarray, iarray, &bb, "byteToInt: int array not pinned");
iap = iarray;
for (ii = 0; ii < len; ii++) {
@@ -377,8 +343,11 @@ Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B
bp += sizeof(jint);
} /* end for */
- ENVPTR->ReleaseIntArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (iarray)
+ UNPIN_INT_ARRAY(ENVONLY, rarray, iarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B */
@@ -388,57 +357,49 @@ JNIEXPORT jshortArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jshortArray rarray;
- int blen;
- jshort *iarray;
- jshort *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToShort: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToShort: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jshort))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToShort: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jshortArray rarray;
+ jboolean bb;
+ jshort *sarray = NULL;
+ jshort *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToShort: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToShort: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jshort))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewShortArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToShort" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewShortArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetShortArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToShort: getShort failed?");
- return NULL;
- } /* end if */
+ PIN_SHORT_ARRAY(ENVONLY, rarray, sarray, &bb, "byteToShort: short array not pinned");
- iap = iarray;
+ iap = sarray;
for (ii = 0; ii < len; ii++) {
*iap = *(jshort *)bp;
iap++;
bp += sizeof(jshort);
} /* end for */
- ENVPTR->ReleaseShortArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (sarray)
+ UNPIN_SHORT_ARRAY(ENVONLY, rarray, sarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B */
@@ -448,57 +409,49 @@ JNIEXPORT jfloatArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jfloatArray rarray;
- int blen;
- jfloat *iarray;
- jfloat *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToFloat: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToFloat: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jfloat))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToFloat: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jfloatArray rarray;
+ jboolean bb;
+ jfloat *farray = NULL;
+ jfloat *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToFloat: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToFloat: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jfloat))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewFloatArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToFloat" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewFloatArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetFloatArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToFloat: getFloat failed?");
- return NULL;
- } /* end if */
+ PIN_FLOAT_ARRAY(ENVONLY, rarray, farray, &bb, "byteToFloat: float array not pinned");
- iap = iarray;
+ iap = farray;
for (ii = 0; ii < len; ii++) {
*iap = *(jfloat *)bp;
iap++;
bp += sizeof(jfloat);
} /* end for */
- ENVPTR->ReleaseFloatArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (farray)
+ UNPIN_FLOAT_ARRAY(ENVONLY, rarray, farray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B */
@@ -508,58 +461,49 @@ JNIEXPORT jlongArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jlongArray rarray;
- int blen;
- jlong *iarray;
- jlong *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToLong: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToLong: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jlong))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToLong: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jlongArray rarray;
+ jboolean bb;
+ jlong *larray = NULL;
+ jlong *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToLong: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToLong: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jlong))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewLongArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToLong" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewLongArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetLongArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToLong: getLong failed?");
- return NULL;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, rarray, larray, &bb, "byteToLong: long array not pinned");
- iap = iarray;
+ iap = larray;
for (ii = 0; ii < len; ii++) {
-
*iap = *(jlong *)bp;
iap++;
bp += sizeof(jlong);
} /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (larray)
+ UNPIN_LONG_ARRAY(ENVONLY, rarray, larray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B */
@@ -569,57 +513,49 @@ JNIEXPORT jdoubleArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jdoubleArray rarray;
- int blen;
- jdouble *iarray;
- jdouble *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToDouble: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToDouble: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jdouble))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToDouble: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jdoubleArray rarray;
+ jboolean bb;
+ jdouble *darray = NULL;
+ jdouble *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToDouble: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToDouble: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jdouble))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewDoubleArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToDouble" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewDoubleArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetDoubleArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToDouble: getDouble failed?");
- return NULL;
- } /* end if */
+ PIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, &bb, "byteToDouble: double array not pinned");
- iap = iarray;
+ iap = darray;
for (ii = 0; ii < len; ii++) {
*iap = *(jdouble *)bp;
iap++;
bp += sizeof(jdouble);
} /* end for */
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (darray)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B */
@@ -629,67 +565,59 @@ JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I
(JNIEnv *env, jclass clss, jint start, jint len, jintArray idata) /* IN: array of int */
{
- jint *ip;
- jint *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ jint *ip = NULL;
+ jint *iarr = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
int ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "intToByte: idata is NULL?");
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == idata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "intToByte: int array is NULL");
- iarr = ENVPTR->GetIntArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "intToByte: getInt failed?");
- return NULL;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, idata, iarr, &bb, "intToByte: int array not pinned");
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "intToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, idata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "intToByte: idata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length");
ip = iarr + start;
blen = ilen * (int)sizeof(jint);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "intToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "intToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "intToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jint); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jint); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (iarr)
+ UNPIN_INT_ARRAY(ENVONLY, idata, iarr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I */
@@ -697,68 +625,61 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S
- (JNIEnv *env, jclass clss, jint start, jint len, jshortArray idata) /* IN: array of short */
+ (JNIEnv *env, jclass clss, jint start, jint len, jshortArray sdata) /* IN: array of short */
{
- jshort *ip;
- jshort *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jshort *ip = NULL;
+ jshort *sarr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
short ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "shortToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetShortArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "shortToByte: getShort failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "shortToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == sdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "shortToByte: short array is NULL");
+
+ PIN_SHORT_ARRAY(ENVONLY, sdata, sarr, &bb, "shortToByte: short array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, sdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "shortToByte: sdata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length");
+
+ ip = sarr + start;
blen = ilen * (int)sizeof(jshort);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "shortToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "shortToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "shortToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jshort); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jshort); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (sarr)
+ UNPIN_SHORT_ARRAY(ENVONLY, sdata, sarr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S */
@@ -766,68 +687,61 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F
- (JNIEnv *env, jclass clss, jint start, jint len, jfloatArray idata) /* IN: array of float */
+ (JNIEnv *env, jclass clss, jint start, jint len, jfloatArray fdata) /* IN: array of float */
{
- jfloat *ip;
- jfloat *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jfloat *ip = NULL;
+ jfloat *farr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
float ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "floatToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetFloatArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "floatToByte: getFloat failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "floatToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == fdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "floatToByte: float array is NULL");
+
+ PIN_FLOAT_ARRAY(ENVONLY, fdata, farr, &bb, "floatToByte: float array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, fdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "floatToByte: fdata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length");
+
+ ip = farr + start;
blen = ilen * (int)sizeof(jfloat);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "floatToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "floatToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "floatToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jfloat); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (farr)
+ UNPIN_FLOAT_ARRAY(ENVONLY, fdata, farr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F */
@@ -835,178 +749,159 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D
- (JNIEnv *env, jclass clss, jint start, jint len, jdoubleArray idata) /* IN: array of double */
+ (JNIEnv *env, jclass clss, jint start, jint len, jdoubleArray ddata) /* IN: array of double */
{
- jdouble *ip;
- jdouble *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jdouble *ip = NULL;
+ jdouble *darr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
double ival;
char bytes[8];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "doubleToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetDoubleArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "doubleToByte: getDouble failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "doubleToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == ddata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "doubleToByte: double array is NULL");
+
+ PIN_DOUBLE_ARRAY(ENVONLY, ddata, darr, &bb, "doubleToByte: double array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, ddata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "doubleToByte: ddata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length");
+
+ ip = darr + start;
blen = ilen * (int)sizeof(jdouble);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "doubleToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "doubleToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "doubleToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jdouble); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (darr)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, ddata, darr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J
- (JNIEnv *env, jclass clss, jint start, jint len, jlongArray idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jint start, jint len, jlongArray ldata) /* IN: array of long */
{
- jlong *ip;
- jlong *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jlong *ip = NULL;
+ jlong *larr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
jlong ival;
char bytes[8];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "longToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetLongArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "longToByte: getLong failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "longToByte: start or len is out of bounds?\n");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == ldata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "longToByte: long array is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, ldata, larr, &bb, "longToByte: long array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, ldata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "longToByte: ldata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length");
+
+ ip = larr + start;
blen = ilen * (int)sizeof(jlong);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "longToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "longToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "longToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jlong); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jlong); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (larr)
+ UNPIN_LONG_ARRAY(ENVONLY, ldata, larr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_intToByte__I
(JNIEnv *env, jclass clss, jint idata) /* IN: int */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- int ij;
- jboolean bb;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
int ival;
char bytes[sizeof(int)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jint));
- if (rarray == NULL) {
- h5outOfMemory( env, "intToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jint))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "intToByte: getByte failed?");
- return NULL;
- } /* end if */
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "intToByte: byte array not pinned");
bap = barray;
u.ival = idata;
- for (ij = 0; ij < sizeof(jint); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jint); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_intToByte__I */
@@ -1014,38 +909,35 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__I
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_floatToByte__F
- (JNIEnv *env, jclass clss, jfloat idata) /* IN: int */
+ (JNIEnv *env, jclass clss, jfloat fdata) /* IN: float */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
float ival;
char bytes[sizeof(float)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jfloat));
- if (rarray == NULL) {
- h5outOfMemory( env, "floatToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "floatToByte: getByte failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jfloat))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "floatToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jfloat); ij++) {
+ u.ival = fdata;
+ for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_floatToByte__F */
@@ -1053,118 +945,107 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__F
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_shortToByte__S
- (JNIEnv *env, jclass clss, jshort idata) /* IN: short */
+ (JNIEnv *env, jclass clss, jshort sdata) /* IN: short */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
short ival;
char bytes[sizeof(short)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jshort));
- if (rarray == NULL) {
- h5outOfMemory( env, "shortToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "shortToByte: getShort failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jshort))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "shortToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jshort); ij++) {
+ u.ival = sdata;
+ for (ij = 0; (size_t) ij < sizeof(jshort); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_shortToByte__S */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D
- (JNIEnv *env, jclass clss, jdouble idata) /* IN: double */
+ (JNIEnv *env, jclass clss, jdouble ddata) /* IN: double */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
double ival;
char bytes[sizeof(double)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jdouble));
- if (rarray == NULL) {
- h5outOfMemory( env, "doubleToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jdouble))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "doubleToByte: getDouble failed?");
- return NULL;
- } /* end if */
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "doubleToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jdouble); ij++) {
+ u.ival = ddata;
+ for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_longToByte__J
- (JNIEnv *env, jclass clss, jlong idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jlong ldata) /* IN: long */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
jlong ival;
char bytes[sizeof(jlong)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jlong));
- if (rarray == NULL) {
- h5outOfMemory( env, "longToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "longToByte: getLong failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jlong))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "longToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jlong); ij++) {
+ u.ival = ldata;
+ for (ij = 0; (size_t) ij < sizeof(jlong); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_longToByte__J */
@@ -1172,38 +1053,35 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__J
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToByte__B
- (JNIEnv *env, jclass clss, jbyte idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jbyte bdata) /* IN: byte */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
jbyte ival;
char bytes[sizeof(jbyte)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jbyte));
- if (rarray == NULL) {
- h5outOfMemory( env, "byteToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "byteToByte: getByte failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jbyte))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "byteToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jbyte); ij++) {
+ u.ival = bdata;
+ for (ij = 0; (size_t) ij < sizeof(jbyte); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToByte__B */
diff --git a/java/test/TestH5.java b/java/test/TestH5.java
index 54603ca..d63ef01 100644
--- a/java/test/TestH5.java
+++ b/java/test/TestH5.java
@@ -162,7 +162,7 @@ public class TestH5 {
*/
@Test
public void testH5get_libversion() {
- int libversion[] = { 1, 11, 4 };
+ int libversion[] = { 1, 11, 6 };
try {
H5.H5get_libversion(libversion);
@@ -177,6 +177,23 @@ public class TestH5 {
for (int i = 0; i < 2; i++)
assertFalse(libversion[i] == 0);
}
+
+ /**
+ * Test method for {@link hdf.hdf5lib.H5#H5get_libversion(int[])}
+ * to ensure a null libversion parameter causes the function to
+ * fail.
+ */
+ @Test
+ public void testH5get_libversion_null_param() {
+ try {
+ H5.H5get_libversion(null);
+ }
+ catch (Throwable err) {
+ return;
+ }
+
+ fail("H5.H5get_libversion: succeeded with a null libversion parameter!");
+ }
/**
* Test method for
@@ -184,7 +201,7 @@ public class TestH5 {
*/
@Test
public void testH5check_version() {
- int majnum = 1, minnum = 11, relnum = 4;
+ int majnum = 1, minnum = 11, relnum = 6;
try {
H5.H5check_version(majnum, minnum, relnum);
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java
index 536364c..7d336e1 100644
--- a/java/test/TestH5A.java
+++ b/java/test/TestH5A.java
@@ -50,6 +50,7 @@ public class TestH5A {
long type_id = -1;
long space_id = -1;
long lapl_id = -1;
+ long aapl_id = -1;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -90,8 +91,10 @@ public class TestH5A {
assertTrue("TestH5A.createH5file: _createDataset: ", H5did > 0);
space_id = H5.H5Screate(HDF5Constants.H5S_NULL);
assertTrue(space_id > 0);
- lapl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_ACCESS);
+ lapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
assertTrue(lapl_id > 0);
+ aapl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_ACCESS);
+ assertTrue(aapl_id > 0);
type_id = H5.H5Tenum_create(HDF5Constants.H5T_STD_I32LE);
assertTrue(type_id > 0);
int status = H5.H5Tenum_insert(type_id, "test", 1);
@@ -122,6 +125,8 @@ public class TestH5A {
try {H5.H5Sclose(space_id);} catch (Exception ex) {}
if (lapl_id > 0)
try {H5.H5Pclose(lapl_id);} catch (Exception ex) {}
+ if (aapl_id > 0)
+ try {H5.H5Pclose(aapl_id);} catch (Exception ex) {}
System.out.println();
}
@@ -194,7 +199,6 @@ public class TestH5A {
long n = 0;
long attr_id = -1;
long attribute_id = -1;
- long aapl_id = HDF5Constants.H5P_DEFAULT;
try {
attr_id = H5.H5Acreate(H5did, "file", type_id, space_id,
@@ -203,7 +207,7 @@ public class TestH5A {
// Opening the existing attribute, obj_name(Created by H5ACreate2)
// by index, attached to an object identifier.
attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC,
- 0, HDF5Constants.H5P_DEFAULT, lapl_id);
+ 0, aapl_id, lapl_id);
assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0);
@@ -258,7 +262,7 @@ public class TestH5A {
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ aapl_id, lapl_id);
assertTrue("testH5Acreate_by_name: H5Acreate_by_name",
attribute_id >= 0);
@@ -289,7 +293,7 @@ public class TestH5A {
boolean bool_val = false;
try {
- attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id);
ret_val = H5.H5Arename(loc_id, old_attr_name, new_attr_name);
@@ -328,7 +332,7 @@ public class TestH5A {
try {
attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name,
new_attr_name, lapl_id);
@@ -369,7 +373,7 @@ public class TestH5A {
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ aapl_id, lapl_id);
assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0);
ret_name = H5.H5Aget_name(attribute_id);
assertEquals(ret_name, attr_name);
diff --git a/java/test/TestH5Edefault.java b/java/test/TestH5Edefault.java
index 591793f..ee2850b 100644
--- a/java/test/TestH5Edefault.java
+++ b/java/test/TestH5Edefault.java
@@ -243,7 +243,7 @@ public class TestH5Edefault {
H5.H5Eget_class_name(-1);
}
- @Test(expected = IllegalArgumentException.class)
+ @Test(expected = HDF5LibraryException.class)
public void testH5Eget_class_name_invalid_classname() throws Throwable {
H5.H5Eget_class_name(HDF5Constants.H5E_DEFAULT);
}
diff --git a/java/test/TestH5F.java b/java/test/TestH5F.java
index e4f9a30..869b45c 100644
--- a/java/test/TestH5F.java
+++ b/java/test/TestH5F.java
@@ -14,6 +14,7 @@
package test;
import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNotEquals;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
@@ -32,6 +33,7 @@ import org.junit.rules.TestName;
public class TestH5F {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testF.h5";
+ private static final String H5_FILE2 = "testF2.h5";
private static final int COUNT_OBJ_FILE = 1;
private static final int COUNT_OBJ_DATASET = 0;
@@ -94,28 +96,12 @@ public class TestH5F {
@Test(expected = HDF5LibraryException.class)
public void testH5Fget_create_plist_closed() throws Throwable {
- long fid = -1;
-
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
- H5fid = -1;
- }
-
- try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- fail("H5.H5Fopen: " + err);
- }
- try {
- H5.H5Fclose(fid);
- }
- catch (Exception ex) {
}
// it should fail because the file was closed.
- H5.H5Fget_create_plist(fid);
+ H5.H5Fget_create_plist(H5fid);
}
@Test
@@ -134,34 +120,17 @@ public class TestH5F {
@Test(expected = HDF5LibraryException.class)
public void testH5Fget_access_plist_closed() throws Throwable {
- long fid = -1;
-
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
- H5fid = -1;
- }
-
- try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- fail("H5.H5Fopen: " + err);
- }
- try {
- H5.H5Fclose(fid);
- }
- catch (Exception ex) {
}
// it should fail because the file was closed.
- H5.H5Fget_access_plist(fid);
+ H5.H5Fget_access_plist(H5fid);
}
@Test
public void testH5Fget_intent_rdwr() {
int intent = 0;
- long fid = -1;
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
@@ -169,31 +138,24 @@ public class TestH5F {
}
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
- intent = H5.H5Fget_intent(fid);
+ intent = H5.H5Fget_intent(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_intent: " + err);
}
assertEquals(HDF5Constants.H5F_ACC_RDWR, intent);
-
- try {
- H5.H5Fclose(fid);
- }
- catch (Exception ex) {
- }
}
@Test
public void testH5Fget_intent_rdonly() {
int intent = 0;
- long fid = -1;
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
@@ -201,24 +163,76 @@ public class TestH5F {
}
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
- intent = H5.H5Fget_intent(fid);
+ intent = H5.H5Fget_intent(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_intent: " + err);
}
assertEquals(HDF5Constants.H5F_ACC_RDONLY, intent);
+ }
+
+ @Test
+ public void testH5Fget_fileno_same() {
+ long fileno1 = 0;
+ long fileno2 = 0;
+ long fid1 = -1;
+ long fid2 = -1;
try {
- H5.H5Fclose(fid);
+ fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5.H5Fflush(fid1, HDF5Constants.H5F_SCOPE_LOCAL);
+ assertTrue("H5Fcreate failed", fid1 > 0);
+ fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR,
+ HDF5Constants.H5P_DEFAULT);
+ assertTrue("H5Fopen failed", fid2 > 0);
+ fileno1 = H5.H5Fget_fileno(fid1);
+ assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0);
+ fileno2 = H5.H5Fget_fileno(fid2);
+ assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0);
+
+ assertEquals("fileno1["+fileno1+"]!=fileno2["+fileno2+"]", fileno1, fileno2);
+ }
+ catch (Throwable err) {
+ fail("testH5Fget_fileno_same: " + err);
+ }
+ finally {
+ H5.H5Fclose(fid1);
+ H5.H5Fclose(fid2);
+ }
+ }
+
+ @Test
+ public void testH5Fget_fileno_diff() {
+ long fileno1 = 0;
+ long fileno2 = 0;
+ long fid2 = -1;
+
+ try {
+ fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5.H5Fflush(fid2, HDF5Constants.H5F_SCOPE_LOCAL);
+ assertTrue("H5Fcreate failed", fid2 > 0);
+
+ fileno1 = H5.H5Fget_fileno(H5fid);
+ assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0);
+ fileno2 = H5.H5Fget_fileno(fid2);
+ assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0);
+
+ assertNotEquals("fileno1["+fileno1+"]==fileno2["+fileno2+"]", fileno1, fileno2);
+ }
+ catch (Throwable err) {
+ fail("testH5Fget_fileno_diff: " + err);
}
- catch (Exception ex) {
+ finally {
+ H5.H5Fclose(fid2);
}
}
diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java
index 8b3c673..d340ee7 100644
--- a/java/test/TestH5Oparams.java
+++ b/java/test/TestH5Oparams.java
@@ -124,7 +124,7 @@ public class TestH5Oparams {
H5.H5Oset_comment(-1, "Bogus");
}
- @Test(expected = IllegalArgumentException.class)
+ @Test(expected = HDF5LibraryException.class)
public void testH5Oget_comment_invalid() throws Throwable {
H5.H5Oget_comment(-1);
}
@@ -139,7 +139,7 @@ public class TestH5Oparams {
H5.H5Oset_comment_by_name(-1, null, null, -1);
}
- @Test(expected = IllegalArgumentException.class)
+ @Test(expected = HDF5LibraryException.class)
public void testH5Oget_comment_by_name_invalid() throws Throwable {
H5.H5Oget_comment_by_name(-1, "Bogus", -1);
}
diff --git a/java/test/TestH5P.java b/java/test/TestH5P.java
index 981f34e..e46ed48 100644
--- a/java/test/TestH5P.java
+++ b/java/test/TestH5P.java
@@ -214,7 +214,7 @@ public class TestH5P {
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Pset_libver_bounds_invalidhigh() throws Throwable {
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_V110, HDF5Constants.H5F_LIBVER_V110+1);
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_V112, HDF5Constants.H5F_LIBVER_V112+1);
}
@Test
diff --git a/java/test/TestH5Sbasic.java b/java/test/TestH5Sbasic.java
index 3007495..2173647 100644
--- a/java/test/TestH5Sbasic.java
+++ b/java/test/TestH5Sbasic.java
@@ -49,7 +49,7 @@ public class TestH5Sbasic {
H5.H5Screate(-1);
}
- @Test(expected = HDF5LibraryException.class)
+ @Test(expected = IllegalArgumentException.class)
public void testH5Sget_simple_extent_type_invalid() throws Throwable {
H5.H5Sget_simple_extent_type(-1);
}
diff --git a/java/test/testfiles/JUnit-TestH5.txt b/java/test/testfiles/JUnit-TestH5.txt
index 37c5b65..b282a91 100644
--- a/java/test/testfiles/JUnit-TestH5.txt
+++ b/java/test/testfiles/JUnit-TestH5.txt
@@ -1,4 +1,5 @@
JUnit version 4.11
+.testH5get_libversion_null_param
.testJ2C
.testIsSerializable
.testH5garbage_collect
@@ -11,5 +12,5 @@ JUnit version 4.11
Time: XXXX
-OK (9 tests)
+OK (10 tests)
diff --git a/java/test/testfiles/JUnit-TestH5F.txt b/java/test/testfiles/JUnit-TestH5F.txt
index 16a423e..f79ac40 100644
--- a/java/test/testfiles/JUnit-TestH5F.txt
+++ b/java/test/testfiles/JUnit-TestH5F.txt
@@ -1,5 +1,7 @@
JUnit version 4.11
.testH5Fget_access_plist
+.testH5Fget_fileno_diff
+.testH5Fget_fileno_same
.testH5Fget_obj_ids
.testH5Fget_intent_rdwr
.testH5Fget_access_plist_closed
@@ -10,5 +12,5 @@ JUnit version 4.11
Time: XXXX
-OK (8 tests)
+OK (10 tests)
diff --git a/m4/ax_check_class.m4 b/m4/ax_check_class.m4
index 098aa77..e673c2d 100644
--- a/m4/ax_check_class.m4
+++ b/m4/ax_check_class.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_check_class.html
+# https://www.gnu.org/software/autoconf-archive/ax_check_class.html
# ===========================================================================
#
# SYNOPSIS
@@ -36,7 +36,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -51,83 +51,18 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 7
+#serial 12
AU_ALIAS([AC_CHECK_CLASS], [AX_CHECK_CLASS])
AC_DEFUN([AX_CHECK_CLASS],[
AC_REQUIRE([AX_PROG_JAVA])
ac_var_name=`echo $1 | sed 's/\./_/g'`
-dnl Normaly I'd use a AC_CACHE_CHECK here but since the variable name is
+dnl Normally I'd use a AC_CACHE_CHECK here but since the variable name is
dnl dynamic I need an extra level of extraction
AC_MSG_CHECKING([for $1 class])
AC_CACHE_VAL(ax_cv_class_$ac_var_name, [
-if test x$ac_cv_prog_uudecode_base64 = xyes; then
-dnl /**
-dnl * Test.java: used to test dynamicaly if a class exists.
-dnl */
-dnl public class Test
-dnl {
-dnl
-dnl public static void
-dnl main( String[] argv )
-dnl {
-dnl Class lib;
-dnl if (argv.length < 1)
-dnl {
-dnl System.err.println ("Missing argument");
-dnl System.exit (77);
-dnl }
-dnl try
-dnl {
-dnl lib = Class.forName (argv[0]);
-dnl }
-dnl catch (ClassNotFoundException e)
-dnl {
-dnl System.exit (1);
-dnl }
-dnl lib = null;
-dnl System.exit (0);
-dnl }
-dnl
-dnl }
-cat << \EOF > Test.uue
-begin-base64 644 Test.class
-yv66vgADAC0AKQcAAgEABFRlc3QHAAQBABBqYXZhL2xhbmcvT2JqZWN0AQAE
-bWFpbgEAFihbTGphdmEvbGFuZy9TdHJpbmc7KVYBAARDb2RlAQAPTGluZU51
-bWJlclRhYmxlDAAKAAsBAANlcnIBABVMamF2YS9pby9QcmludFN0cmVhbTsJ
-AA0ACQcADgEAEGphdmEvbGFuZy9TeXN0ZW0IABABABBNaXNzaW5nIGFyZ3Vt
-ZW50DAASABMBAAdwcmludGxuAQAVKExqYXZhL2xhbmcvU3RyaW5nOylWCgAV
-ABEHABYBABNqYXZhL2lvL1ByaW50U3RyZWFtDAAYABkBAARleGl0AQAEKEkp
-VgoADQAXDAAcAB0BAAdmb3JOYW1lAQAlKExqYXZhL2xhbmcvU3RyaW5nOylM
-amF2YS9sYW5nL0NsYXNzOwoAHwAbBwAgAQAPamF2YS9sYW5nL0NsYXNzBwAi
-AQAgamF2YS9sYW5nL0NsYXNzTm90Rm91bmRFeGNlcHRpb24BAAY8aW5pdD4B
-AAMoKVYMACMAJAoAAwAlAQAKU291cmNlRmlsZQEACVRlc3QuamF2YQAhAAEA
-AwAAAAAAAgAJAAUABgABAAcAAABtAAMAAwAAACkqvgSiABCyAAwSD7YAFBBN
-uAAaKgMyuAAeTKcACE0EuAAaAUwDuAAasQABABMAGgAdACEAAQAIAAAAKgAK
-AAAACgAAAAsABgANAA4ADgATABAAEwASAB4AFgAiABgAJAAZACgAGgABACMA
-JAABAAcAAAAhAAEAAQAAAAUqtwAmsQAAAAEACAAAAAoAAgAAAAQABAAEAAEA
-JwAAAAIAKA==
-====
-EOF
- if $UUDECODE Test.uue; then
- :
- else
- echo "configure: __oline__: uudecode had trouble decoding base 64 file 'Test.uue'" >&AS_MESSAGE_LOG_FD
- echo "configure: failed file was:" >&AS_MESSAGE_LOG_FD
- cat Test.uue >&AS_MESSAGE_LOG_FD
- ac_cv_prog_uudecode_base64=no
- fi
- rm -f Test.uue
- if AC_TRY_COMMAND($JAVA $JAVAFLAGS Test $1) >/dev/null 2>&1; then
- eval "ac_cv_class_$ac_var_name=yes"
- else
- eval "ac_cv_class_$ac_var_name=no"
- fi
- rm -f Test.class
-else
AX_TRY_COMPILE_JAVA([$1], , [eval "ac_cv_class_$ac_var_name=yes"],
[eval "ac_cv_class_$ac_var_name=no"])
-fi
eval "ac_var_val=$`eval echo ac_cv_class_$ac_var_name`"
eval "HAVE_$ac_var_name=$`echo ac_cv_class_$ac_var_val`"
HAVE_LAST_CLASS=$ac_var_val
@@ -137,7 +72,7 @@ else
ifelse([$3], , :, [$3])
fi
])
-dnl for some reason the above statment didn't fall though here?
+dnl for some reason the above statement didn't fall though here?
dnl do scripts have variable scoping?
eval "ac_var_val=$`eval echo ac_cv_class_$ac_var_name`"
AC_MSG_RESULT($ac_var_val)
diff --git a/m4/ax_check_classpath.m4 b/m4/ax_check_classpath.m4
index 3c9081a..e08a253 100644
--- a/m4/ax_check_classpath.m4
+++ b/m4/ax_check_classpath.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_check_classpath.html
+# https://www.gnu.org/software/autoconf-archive/ax_check_classpath.html
# ===========================================================================
#
# SYNOPSIS
@@ -33,7 +33,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -48,7 +48,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 5
+#serial 6
AU_ALIAS([AC_CHECK_CLASSPATH], [AX_CHECK_CLASSPATH])
AC_DEFUN([AX_CHECK_CLASSPATH],[
diff --git a/m4/ax_check_java_home.m4 b/m4/ax_check_java_home.m4
index cfe8f58..1d60387 100644
--- a/m4/ax_check_java_home.m4
+++ b/m4/ax_check_java_home.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_check_java_home.html
+# https://www.gnu.org/software/autoconf-archive/ax_check_java_home.html
# ===========================================================================
#
# SYNOPSIS
@@ -28,7 +28,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -43,7 +43,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 6
+#serial 7
AU_ALIAS([AC_CHECK_JAVA_HOME], [AX_CHECK_JAVA_HOME])
diff --git a/m4/ax_check_junit.m4 b/m4/ax_check_junit.m4
index 39b52d1..44dd70d 100644
--- a/m4/ax_check_junit.m4
+++ b/m4/ax_check_junit.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_check_junit.html
+# https://www.gnu.org/software/autoconf-archive/ax_check_junit.html
# ===========================================================================
#
# SYNOPSIS
@@ -45,7 +45,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 5
+#serial 6
AU_ALIAS([AC_CHECK_JUNIT], [AX_CHECK_JUNIT])
AC_DEFUN([AX_CHECK_JUNIT],[
diff --git a/m4/ax_check_rqrd_class.m4 b/m4/ax_check_rqrd_class.m4
index 8f14241..baa041a 100644
--- a/m4/ax_check_rqrd_class.m4
+++ b/m4/ax_check_rqrd_class.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_check_rqrd_class.html
+# https://www.gnu.org/software/autoconf-archive/ax_check_rqrd_class.html
# ===========================================================================
#
# SYNOPSIS
@@ -35,7 +35,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -50,7 +50,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 5
+#serial 6
AU_ALIAS([AC_CHECK_RQRD_CLASS], [AX_CHECK_RQRD_CLASS])
AC_DEFUN([AX_CHECK_RQRD_CLASS],[
diff --git a/m4/ax_java_check_class.m4 b/m4/ax_java_check_class.m4
index 917638a..c9d60f7 100644
--- a/m4/ax_java_check_class.m4
+++ b/m4/ax_java_check_class.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_java_check_class.html
+# https://www.gnu.org/software/autoconf-archive/ax_java_check_class.html
# ===========================================================================
#
# SYNOPSIS
@@ -15,7 +15,7 @@
#
# The macro tries to compile a minimal program importing <class>. Some
# newer compilers moan about the failure to use this but fail or produce a
-# class file anyway. All moaing is sunk to /dev/null since I only wanted
+# class file anyway. All moaning is sunk to /dev/null since I only wanted
# to know if the class could be imported. This is a recommended followup
# to AX_CHECK_JAVA_PLUGIN with classpath appropriately adjusted.
#
@@ -34,7 +34,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -49,7 +49,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 9
+#serial 12
AU_ALIAS([DPS_JAVA_CHECK_CLASS], [AX_JAVA_CHECK_CLASS])
AC_DEFUN([AX_JAVA_CHECK_CLASS],[
diff --git a/m4/ax_java_options.m4 b/m4/ax_java_options.m4
index 36c10d9..722d788 100644
--- a/m4/ax_java_options.m4
+++ b/m4/ax_java_options.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_java_options.html
+# https://www.gnu.org/software/autoconf-archive/ax_java_options.html
# ===========================================================================
#
# SYNOPSIS
@@ -27,7 +27,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 6
+#serial 7
AU_ALIAS([AC_JAVA_OPTIONS], [AX_JAVA_OPTIONS])
AC_DEFUN([AX_JAVA_OPTIONS],[
diff --git a/m4/ax_jni_include_dir.m4 b/m4/ax_jni_include_dir.m4
index becb33a..ae7a5f0 100644
--- a/m4/ax_jni_include_dir.m4
+++ b/m4/ax_jni_include_dir.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_jni_include_dir.html
+# https://www.gnu.org/software/autoconf-archive/ax_jni_include_dir.html
# ===========================================================================
#
# SYNOPSIS
@@ -32,6 +32,10 @@
#
# - at the configure level, setenv JAVAC
#
+# This macro depends on AC_CANONICAL_HOST which requires that config.guess
+# and config.sub be distributed along with the source code. See autoconf
+# manual for details.
+#
# Note: This macro can work with the autoconf M4 macros for Java programs.
# This particular macro is not part of the original set of macros.
#
@@ -44,11 +48,13 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 11
+#serial 15
AU_ALIAS([AC_JNI_INCLUDE_DIR], [AX_JNI_INCLUDE_DIR])
AC_DEFUN([AX_JNI_INCLUDE_DIR],[
+AC_REQUIRE([AC_CANONICAL_HOST])
+
JNI_INCLUDE_DIRS=""
if test "x$JAVA_HOME" != x; then
@@ -66,14 +72,17 @@ else
fi
case "$host_os" in
- darwin*) # Apple JDK is at /System location and has headers symlinked elsewhere
- case "$_JTOPDIR" in
- /System/Library/Frameworks/JavaVM.framework/*)
- _JTOPDIR=`echo "$_JTOPDIR" | sed -e 's:/[[^/]]*$::'`
- _JINC="$_JTOPDIR/Headers";;
- *) _JINC="$_JTOPDIR/include";;
- esac;;
- *) _JINC="$_JTOPDIR/include";;
+ darwin*) # Apple Java headers are inside the Xcode bundle.
+ macos_version=$(sw_vers -productVersion | sed -n -e 's/^@<:@0-9@:>@*.\(@<:@0-9@:>@*\).@<:@0-9@:>@*/\1/p')
+ if @<:@ "$macos_version" -gt "7" @:>@; then
+ _JTOPDIR="$(xcrun --show-sdk-path)/System/Library/Frameworks/JavaVM.framework"
+ _JINC="$_JTOPDIR/Headers"
+ else
+ _JTOPDIR="/System/Library/Frameworks/JavaVM.framework"
+ _JINC="$_JTOPDIR/Headers"
+ fi
+ ;;
+ *) _JINC="$_JTOPDIR/include";;
esac
_AS_ECHO_LOG([_JTOPDIR=$_JTOPDIR])
_AS_ECHO_LOG([_JINC=$_JINC])
@@ -81,13 +90,21 @@ _AS_ECHO_LOG([_JINC=$_JINC])
# On Mac OS X 10.6.4, jni.h is a symlink:
# /System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers/jni.h
# -> ../../CurrentJDK/Headers/jni.h.
-AC_CHECK_FILE([$_JINC/jni.h],
- [JNI_INCLUDE_DIRS="$JNI_INCLUDE_DIRS $_JINC"],
- [_JTOPDIR=`echo "$_JTOPDIR" | sed -e 's:/[[^/]]*$::'`
- AC_CHECK_FILE([$_JTOPDIR/include/jni.h],
- [JNI_INCLUDE_DIRS="$JNI_INCLUDE_DIRS $_JTOPDIR/include"],
- AC_MSG_ERROR([cannot find JDK header files]))
- ])
+AC_CACHE_CHECK(jni headers, ac_cv_jni_header_path,
+[
+ if test -f "$_JINC/jni.h"; then
+ ac_cv_jni_header_path="$_JINC"
+ JNI_INCLUDE_DIRS="$JNI_INCLUDE_DIRS $ac_cv_jni_header_path"
+ else
+ _JTOPDIR=`echo "$_JTOPDIR" | sed -e 's:/[[^/]]*$::'`
+ if test -f "$_JTOPDIR/include/jni.h"; then
+ ac_cv_jni_header_path="$_JTOPDIR/include"
+ JNI_INCLUDE_DIRS="$JNI_INCLUDE_DIRS $ac_cv_jni_header_path"
+ else
+ ac_cv_jni_header_path=none
+ fi
+ fi
+])
# get the likely subdirectories for system specific java includes
case "$host_os" in
@@ -102,13 +119,15 @@ cygwin*) _JNI_INC_SUBDIRS="win32";;
*) _JNI_INC_SUBDIRS="genunix";;
esac
-# add any subdirectories that are present
-for JINCSUBDIR in $_JNI_INC_SUBDIRS
-do
+if test "x$ac_cv_jni_header_path" != "xnone"; then
+ # add any subdirectories that are present
+ for JINCSUBDIR in $_JNI_INC_SUBDIRS
+ do
if test -d "$_JTOPDIR/include/$JINCSUBDIR"; then
JNI_INCLUDE_DIRS="$JNI_INCLUDE_DIRS $_JTOPDIR/include/$JINCSUBDIR"
fi
-done
+ done
+fi
])
# _ACJNI_FOLLOW_SYMLINKS <path>
diff --git a/m4/ax_prog_jar.m4 b/m4/ax_prog_jar.m4
index 3c60fca..d474912 100644
--- a/m4/ax_prog_jar.m4
+++ b/m4/ax_prog_jar.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_jar.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_jar.html
# ===========================================================================
#
# SYNOPSIS
@@ -37,7 +37,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 7
+#serial 8
AU_ALIAS([AC_PROG_JAR], [AX_PROG_JAR])
AC_DEFUN([AX_PROG_JAR],[
diff --git a/m4/ax_prog_java.m4 b/m4/ax_prog_java.m4
index 03961db..c2e6964 100644
--- a/m4/ax_prog_java.m4
+++ b/m4/ax_prog_java.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_java.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_java.html
# ===========================================================================
#
# SYNOPSIS
@@ -85,7 +85,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -100,7 +100,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 9
+#serial 10
AU_ALIAS([AC_PROG_JAVA], [AX_PROG_JAVA])
AC_DEFUN([AX_PROG_JAVA],[
diff --git a/m4/ax_prog_java_cc.m4 b/m4/ax_prog_java_cc.m4
index 3df064f..ce9612d 100644
--- a/m4/ax_prog_java_cc.m4
+++ b/m4/ax_prog_java_cc.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_java_cc.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_java_cc.html
# ===========================================================================
#
# SYNOPSIS
@@ -56,7 +56,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -71,7 +71,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 4
+#serial 5
# AX_PROG_JAVA_CC([COMPILER ...])
# --------------------------
diff --git a/m4/ax_prog_java_works.m4 b/m4/ax_prog_java_works.m4
index 54e132a..bc70526 100644
--- a/m4/ax_prog_java_works.m4
+++ b/m4/ax_prog_java_works.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_java_works.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_java_works.html
# ===========================================================================
#
# SYNOPSIS
@@ -32,7 +32,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -47,57 +47,16 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 9
+#serial 11
AU_ALIAS([AC_PROG_JAVA_WORKS], [AX_PROG_JAVA_WORKS])
AC_DEFUN([AX_PROG_JAVA_WORKS], [
-AC_PATH_PROG(UUDECODE, uudecode, [no])
-if test x$UUDECODE != xno; then
-AC_CACHE_CHECK([if uudecode can decode base 64 file], ac_cv_prog_uudecode_base64, [
-dnl /**
-dnl * Test.java: used to test if java compiler works.
-dnl */
-dnl public class Test
-dnl {
-dnl
-dnl public static void
-dnl main( String[] argv )
-dnl {
-dnl System.exit (0);
-dnl }
-dnl
-dnl }
-cat << \EOF > Test.uue
-begin-base64 644 Test.class
-yv66vgADAC0AFQcAAgEABFRlc3QHAAQBABBqYXZhL2xhbmcvT2JqZWN0AQAE
-bWFpbgEAFihbTGphdmEvbGFuZy9TdHJpbmc7KVYBAARDb2RlAQAPTGluZU51
-bWJlclRhYmxlDAAKAAsBAARleGl0AQAEKEkpVgoADQAJBwAOAQAQamF2YS9s
-YW5nL1N5c3RlbQEABjxpbml0PgEAAygpVgwADwAQCgADABEBAApTb3VyY2VG
-aWxlAQAJVGVzdC5qYXZhACEAAQADAAAAAAACAAkABQAGAAEABwAAACEAAQAB
-AAAABQO4AAyxAAAAAQAIAAAACgACAAAACgAEAAsAAQAPABAAAQAHAAAAIQAB
-AAEAAAAFKrcAErEAAAABAAgAAAAKAAIAAAAEAAQABAABABMAAAACABQ=
-====
-EOF
-if $UUDECODE Test.uue; then
- ac_cv_prog_uudecode_base64=yes
-else
- echo "configure: __oline__: uudecode had trouble decoding base 64 file 'Test.uue'" >&AS_MESSAGE_LOG_FD
- echo "configure: failed file was:" >&AS_MESSAGE_LOG_FD
- cat Test.uue >&AS_MESSAGE_LOG_FD
- ac_cv_prog_uudecode_base64=no
-fi
-rm -f Test.uue])
-fi
-if test x$ac_cv_prog_uudecode_base64 != xyes; then
- rm -f Test.class
- AC_MSG_WARN([I have to compile Test.class from scratch])
if test x$ac_cv_prog_javac_works = xno; then
AC_MSG_ERROR([Cannot compile java source. $JAVAC does not work properly])
fi
if test x$ac_cv_prog_javac_works = x; then
AX_PROG_JAVAC
fi
-fi
AC_CACHE_CHECK(if $JAVA works, ac_cv_prog_java_works, [
JAVA_TEST=Test.java
CLASS_TEST=Test.class
@@ -111,7 +70,6 @@ public static void main (String args[]) {
} }
EOF
changequote([, ])dnl
-if test x$ac_cv_prog_uudecode_base64 != xyes; then
if AC_TRY_COMMAND($JAVAC $JAVACFLAGS $JAVA_TEST) && test -s $CLASS_TEST; then
:
else
@@ -119,7 +77,6 @@ if test x$ac_cv_prog_uudecode_base64 != xyes; then
cat $JAVA_TEST >&AS_MESSAGE_LOG_FD
AC_MSG_ERROR(The Java compiler $JAVAC failed (see config.log, check the CLASSPATH?))
fi
-fi
if AC_TRY_COMMAND($JAVA -classpath . $JAVAFLAGS $TEST) >/dev/null 2>&1; then
ac_cv_prog_java_works=yes
else
@@ -127,7 +84,7 @@ else
cat $JAVA_TEST >&AS_MESSAGE_LOG_FD
AC_MSG_ERROR(The Java VM $JAVA failed (see config.log, check the CLASSPATH?))
fi
-rm -fr $JAVA_TEST $CLASS_TEST Test.uue
+rm -f $JAVA_TEST $CLASS_TEST
])
AC_PROVIDE([$0])dnl
]
diff --git a/m4/ax_prog_javac.m4 b/m4/ax_prog_javac.m4
index d061243..8abb733 100644
--- a/m4/ax_prog_javac.m4
+++ b/m4/ax_prog_javac.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_javac.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_javac.html
# ===========================================================================
#
# SYNOPSIS
@@ -49,7 +49,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -64,7 +64,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 7
+#serial 8
AU_ALIAS([AC_PROG_JAVAC], [AX_PROG_JAVAC])
AC_DEFUN([AX_PROG_JAVAC],[
diff --git a/m4/ax_prog_javac_works.m4 b/m4/ax_prog_javac_works.m4
index 7dfa1e3..9b48149 100644
--- a/m4/ax_prog_javac_works.m4
+++ b/m4/ax_prog_javac_works.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_javac_works.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_javac_works.html
# ===========================================================================
#
# SYNOPSIS
@@ -32,7 +32,7 @@
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
-# with this program. If not, see <http://www.gnu.org/licenses/>.
+# with this program. If not, see <https://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
@@ -47,7 +47,7 @@
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
-#serial 6
+#serial 7
AU_ALIAS([AC_PROG_JAVAC_WORKS], [AX_PROG_JAVAC_WORKS])
AC_DEFUN([AX_PROG_JAVAC_WORKS],[
diff --git a/m4/ax_prog_javadoc.m4 b/m4/ax_prog_javadoc.m4
index bcb6045..b9fcea4 100644
--- a/m4/ax_prog_javadoc.m4
+++ b/m4/ax_prog_javadoc.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_javadoc.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_javadoc.html
# ===========================================================================
#
# SYNOPSIS
@@ -38,7 +38,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 8
+#serial 9
AU_ALIAS([AC_PROG_JAVADOC], [AX_PROG_JAVADOC])
AC_DEFUN([AX_PROG_JAVADOC],[
diff --git a/m4/ax_prog_javah.m4 b/m4/ax_prog_javah.m4
index cefc616..935ec89 100644
--- a/m4/ax_prog_javah.m4
+++ b/m4/ax_prog_javah.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_prog_javah.html
+# https://www.gnu.org/software/autoconf-archive/ax_prog_javah.html
# ===========================================================================
#
# SYNOPSIS
@@ -21,7 +21,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 8
+#serial 11
AU_ALIAS([AC_PROG_JAVAH], [AX_PROG_JAVAH])
AC_DEFUN([AX_PROG_JAVAH],[
@@ -30,19 +30,19 @@ AC_REQUIRE([AC_PROG_CPP])dnl
AC_PATH_PROG(JAVAH,javah)
AS_IF([test -n "$ac_cv_path_JAVAH"],
[
- AC_TRY_CPP([#include <jni.h>],,[
+ AC_PREPROC_IFELSE([AC_LANG_SOURCE([[#include <jni.h>]])],[],[
ac_save_CPPFLAGS="$CPPFLAGS"
- _ACJAVAH_FOLLOW_SYMLINKS("$ac_cv_path_JAVAH")
+ _ACJAVAH_FOLLOW_SYMLINKS("$ac_cv_path_JAVAH")
ax_prog_javah_bin_dir=`AS_DIRNAME([$_ACJAVAH_FOLLOWED])`
ac_dir="`AS_DIRNAME([$ax_prog_javah_bin_dir])`/include"
AS_CASE([$build_os],
- [cygwin*],
+ [cygwin*|mingw*],
[ac_machdep=win32],
[ac_machdep=`AS_ECHO($build_os) | sed 's,[[-0-9]].*,,'`])
CPPFLAGS="$ac_save_CPPFLAGS -I$ac_dir -I$ac_dir/$ac_machdep"
- AC_TRY_CPP([#include <jni.h>],
- ac_save_CPPFLAGS="$CPPFLAGS",
- AC_MSG_WARN([unable to include <jni.h>]))
+ AC_PREPROC_IFELSE([AC_LANG_SOURCE([[#include <jni.h>]])],
+ [ac_save_CPPFLAGS="$CPPFLAGS"],
+ [AC_MSG_WARN([unable to include <jni.h>])])
CPPFLAGS="$ac_save_CPPFLAGS"])
])
])
diff --git a/m4/ax_try_compile_java.m4 b/m4/ax_try_compile_java.m4
index a8ed6b2..245c36c 100644
--- a/m4/ax_try_compile_java.m4
+++ b/m4/ax_try_compile_java.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_try_compile_java.html
+# https://www.gnu.org/software/autoconf-archive/ax_try_compile_java.html
# ===========================================================================
#
# SYNOPSIS
@@ -29,7 +29,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 8
+#serial 10
AU_ALIAS([AC_TRY_COMPILE_JAVA], [AX_TRY_COMPILE_JAVA])
AC_DEFUN([AX_TRY_COMPILE_JAVA],[
@@ -48,8 +48,8 @@ dnl Don't remove the temporary files here, so they can be examined.
else
echo "configure: failed program was:" >&AS_MESSAGE_LOG_FD
cat Test.java >&AS_MESSAGE_LOG_FD
-ifelse([$4], , , [ rm -fr Test.java Test.class
+ifelse([$4], , , [ rm -f Test.java Test.class
$4
])dnl
fi
-rm -fr Test.java Test.class])
+rm -f Test.java Test.class])
diff --git a/m4/ax_try_run_java.m4 b/m4/ax_try_run_java.m4
index c680f03..2ebb86d 100644
--- a/m4/ax_try_run_java.m4
+++ b/m4/ax_try_run_java.m4
@@ -1,5 +1,5 @@
# ===========================================================================
-# http://www.gnu.org/software/autoconf-archive/ax_try_run_java.html
+# https://www.gnu.org/software/autoconf-archive/ax_try_run_java.html
# ===========================================================================
#
# SYNOPSIS
@@ -29,7 +29,7 @@
# and this notice are preserved. This file is offered as-is, without any
# warranty.
-#serial 2
+#serial 3
AU_ALIAS([AC_TRY_RUN_JAVA], [AX_TRY_RUN_JAVA])
AC_DEFUN([AX_TRY_RUN_JAVA],[
diff --git a/release_docs/HISTORY-1_10.txt b/release_docs/HISTORY-1_10.txt
index 9887a54..ad8beb2 100644
--- a/release_docs/HISTORY-1_10.txt
+++ b/release_docs/HISTORY-1_10.txt
@@ -3,6 +3,8 @@ HDF5 History
This file contains development history of the HDF5 1.10 branch
+06. Release Information for hdf5-1.10.4
+05. Release Information for hdf5-1.10.3
04. Release Information for hdf5-1.10.2
03. Release Information for hdf5-1.10.1
02. Release Information for hdf5-1.10.0-patch1
@@ -10,6 +12,1039 @@ This file contains development history of the HDF5 1.10 branch
[Search on the string '%%%%' for section breaks of each release.]
+%%%%1.10.4%%%%
+
+HDF5 version 1.10.4 released on 2018-10-05
+================================================================================
+
+
+INTRODUCTION
+
+This document describes the differences between this release and the previous
+HDF5 release. It contains information on the platforms tested and known
+problems in this release. For more details check the HISTORY*.txt files in the
+HDF5 source.
+
+Note that documentation in the links below will be updated at the time of each
+final release.
+
+Links to HDF5 documentation can be found on The HDF5 web page:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5
+
+The official HDF5 releases can be obtained from:
+
+ https://www.hdfgroup.org/downloads/hdf5/
+
+Changes from Release to Release and New Features in the HDF5-1.10.x release series
+can be found at:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5+Application+Developer%27s+Guide
+
+If you have any questions or comments, please send them to the HDF Help Desk:
+
+ help@hdfgroup.org
+
+
+CONTENTS
+
+- Bug Fixes since HDF5-1.10.3
+- Supported Platforms
+- Tested Configuration Features Summary
+- More Tested Platforms
+- Known Problems
+- CMake vs. Autotools installations
+
+
+New Features
+============
+
+ Configuration:
+ -------------
+ - Add toolchain and cross-compile support
+
+ Added info on using a toolchain file to INSTALL_CMAKE.txt. A
+ toolchain file is also used in cross-compiling, which requires
+ CMAKE_CROSSCOMPILING_EMULATOR to be set. To help with cross-compiling
+ the fortran configure process, the HDF5UseFortran.cmake file macros
+ were improved. Fixed a Fortran configure file issue that incorrectly
+ used #cmakedefine instead of #define.
+
+ (ADB - 2018/10/04, HDFFV-10594)
+
+ - Add warning flags for Intel compilers
+
+ Identified Intel compiler specific warnings flags that should be used
+ instead of GNU flags.
+
+ (ADB - 2018/10/04, TRILABS-21)
+
+ - Add default rpath to targets
+
+ Default rpaths should be set in shared executables and
+ libraries to allow the use of loading dependent libraries
+ without requiring LD_LIBRARY_PATH to be set. The default
+ path should be relative using @rpath on osx and $ORIGIN
+ on linux. Windows is not affected.
+
+ (ADB - 2018/09/26, HDFFV-10594)
+
+ Library:
+ --------
+ - Allow pre-generated H5Tinit.c and H5make_libsettings.c to be used.
+
+ Rather than always running H5detect and generating H5Tinit.c and
+ H5make_libsettings.c, supply a location for those files.
+
+ (ADB - 2018/09/18, HDFFV-10332)
+
+
+Bug Fixes since HDF5-1.10.3 release
+==================================
+
+ Library
+ -------
+ - Allow H5detect and H5make_libsettings to take a file as an argument.
+
+ Rather than only writing to stdout, add a command argument to name
+ the file that H5detect and H5make_libsettings will use for output.
+ Without an argument, stdout is still used, so backwards compatibility
+ is maintained.
+
+ (ADB - 2018/09/05, HDFFV-9059)
+
+ - A bug was discovered in the parallel library where an application
+ would hang if a collective read/write of a chunked dataset occurred
+ when collective metadata reads were enabled and some of the ranks
+ had no selection in the dataset's dataspace. The ranks which had no
+ selection in the dataset's dataspace called H5D__chunk_addrmap() to
+ retrieve the lowest chunk address in the dataset. This is because we
+ require reads/writes to be performed in strictly non-decreasing order
+ of chunk address in the file.
+
+ When the chunk index used was a version 1 or 2 B-tree, these
+ non-participating ranks would issue a collective MPI_Bcast() call
+ that the participating ranks would not issue, causing the hang. Since
+ the non-participating ranks are not actually reading/writing anything,
+ the H5D__chunk_addrmap() call can be safely removed and the address used
+ for the read/write can be set to an arbitrary number (0 was chosen).
+
+ (JTH - 2018/08/25, HDFFV-10501)
+
+ Java Library:
+ ----------------
+ - JNI native library dependencies
+
+ The build for the hdf5_java native library used the wrong
+ hdf5 target library for CMake builds. Correcting the hdf5_java
+ library to build with the shared hdf5 library required testing
+ paths to change also.
+
+ (ADB - 2018/08/31, HDFFV-10568)
+
+ - Java iterator callbacks
+
+ Change global callback object to a small stack structure in order
+ to fix a runtime crash. This crash was discovered when iterating
+ through a file with nested group members. The global variable
+ visit_callback is overwritten when recursion starts. When recursion
+ completes, visit_callback will be pointing to the wrong callback method.
+
+ (ADB - 2018/08/15, HDFFV-10536)
+
+ - Java HDFLibraryException class
+
+ Change parent class from Exception to RuntimeException.
+
+ (ADB - 2018/07/30, HDFFV-10534)
+
+ - JNI Read and Write
+
+ Refactored variable-length functions, H5DreadVL and H5AreadVL,
+ to correct dataset and attribute reads. New write functions,
+ H5DwriteVL and H5AwriteVL, are under construction.
+
+ (ADB - 2018/06/02, HDFFV-10519)
+
+
+Supported Platforms
+===================
+
+ Linux 2.6.32-696.16.1.el6.ppc64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ #1 SMP ppc64 GNU/Linux g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ (ostrich) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ IBM XL C/C++ V13.1
+ IBM XL Fortran V15.1
+
+ Linux 3.10.0-327.10.1.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ (kituo/moohan) Version 4.8.5 20150623 (Red Hat 4.8.5-4)
+ Version 4.9.3, Version 5.2.0
+ Intel(R) C (icc), C++ (icpc), Fortran (icc)
+ compilers:
+ Version 17.0.0.098 Build 20160721
+ MPICH 3.1.4 compiled with GCC 4.9.3
+
+ SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc
+ (emu) Sun Fortran 95 8.6 SunOS_sparc
+ Sun C++ 5.12 SunOS_sparc
+
+ Windows 7 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
+
+ Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
+ Visual Studio 2013 w/ Intel Fortran 15 (cmake)
+ Visual Studio 2015 w/ Intel Fortran 16 (cmake)
+ Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake)
+ Visual Studio 2015 w/ MSMPI 8 (cmake)
+
+ Windows 10 Visual Studio 2015 w/ Intel Fortran 18 (cmake)
+
+ Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 18 (cmake)
+ Visual Studio 2017 w/ Intel Fortran 18 (cmake)
+
+ Mac OS X Yosemite 10.10.5 Apple clang/clang++ version 6.1 from Xcode 7.0
+ 64-bit gfortran GNU Fortran (GCC) 4.9.2
+ (osx1010dev/osx1010test) Intel icc/icpc/ifort version 15.0.3
+
+ Mac OS X El Capitan 10.11.6 Apple clang/clang++ version 7.3.0 from Xcode 7.3
+ 64-bit gfortran GNU Fortran (GCC) 5.2.0
+ (osx1011dev/osx1011test) Intel icc/icpc/ifort version 16.0.2
+
+ Mac OS Sierra 10.12.6 Apple LLVM version 8.1.0 (clang/clang++-802.0.42)
+ 64-bit gfortran GNU Fortran (GCC) 7.1.0
+ (kite) Intel icc/icpc/ifort version 17.0.2
+
+
+Tested Configuration Features Summary
+=====================================
+
+ In the tables below
+ y = tested
+ n = not tested in this release
+ C = Cluster
+ W = Workstation
+ x = not working in this release
+ dna = does not apply
+ ( ) = footnote appears below second table
+ <blank> = testing incomplete on this feature or platform
+
+Platform C F90/ F90 C++ zlib SZIP
+ parallel F2003 parallel
+Solaris2.11 32-bit n y/y n y y y
+Solaris2.11 64-bit n y/n n y y y
+Windows 7 y y/y n y y y
+Windows 7 x64 y y/y y y y y
+Windows 7 Cygwin n y/n n y y y
+Windows 7 x64 Cygwin n y/n n y y y
+Windows 10 y y/y n y y y
+Windows 10 x64 y y/y n y y y
+Mac OS X Mavericks 10.9.5 64-bit n y/y n y y y
+Mac OS X Yosemite 10.10.5 64-bit n y/y n y y y
+Mac OS X El Capitan 10.11.6 64-bit n y/y n y y y
+Mac OS Sierra 10.12.6 64-bit n y/y n y y y
+CentOS 7.2 Linux 3.10.0 x86_64 PGI n y/y n y y y
+CentOS 7.2 Linux 3.10.0 x86_64 GNU y y/y y y y y
+CentOS 7.2 Linux 3.10.0 x86_64 Intel n y/y n y y y
+Linux 2.6.32-573.18.1.el6.ppc64 n y/y n y y y
+
+
+Platform Shared Shared Shared Thread-
+ C libs F90 libs C++ libs safe
+Solaris2.11 32-bit y y y y
+Solaris2.11 64-bit y y y y
+Windows 7 y y y y
+Windows 7 x64 y y y y
+Windows 7 Cygwin n n n y
+Windows 7 x64 Cygwin n n n y
+Windows 10 y y y y
+Windows 10 x64 y y y y
+Mac OS X Mavericks 10.9.5 64-bit y n y y
+Mac OS X Yosemite 10.10.5 64-bit y n y y
+Mac OS X El Capitan 10.11.6 64-bit y n y y
+Mac OS Sierra 10.12.6 64-bit y n y y
+CentOS 7.2 Linux 3.10.0 x86_64 PGI y y y n
+CentOS 7.2 Linux 3.10.0 x86_64 GNU y y y y
+CentOS 7.2 Linux 3.10.0 x86_64 Intel y y y n
+Linux 2.6.32-573.18.1.el6.ppc64 y y y n
+
+Compiler versions for each platform are listed in the preceding
+"Supported Platforms" table.
+
+
+More Tested Platforms
+=====================
+The following platforms are not supported but have been tested for this release.
+
+ Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ (mayll/platypus) Version 4.4.7 20120313
+ Version 4.9.3, 5.3.0, 6.2.0
+ PGI C, Fortran, C++ for 64-bit target on
+ x86-64;
+ Version 17.10-0
+ Intel(R) C (icc), C++ (icpc), Fortran (icc)
+ compilers:
+ Version 17.0.4.196 Build 20170411
+ MPICH 3.1.4 compiled with GCC 4.9.3
+
+ Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
+ #1 SMP x86_64 GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
+ (jelly) with NAG Fortran Compiler Release 6.1(Tozai)
+ GCC Version 7.1.0
+ OpenMPI 3.0.0-GCC-7.2.0-2.29,
+ 3.1.0-GCC-7.2.0-2.29
+ Intel(R) C (icc) and C++ (icpc) compilers
+ Version 17.0.0.098 Build 20160721
+ with NAG Fortran Compiler Release 6.1(Tozai)
+
+ Linux 3.10.0-327.10.1.el7 MPICH 3.2 compiled with GCC 5.3.0
+ #1 SMP x86_64 GNU/Linux
+ (moohan)
+
+ Linux 2.6.32-573.18.1.el6.ppc64 MPICH mpich 3.1.4 compiled with
+ #1 SMP ppc64 GNU/Linux IBM XL C/C++ for Linux, V13.1
+ (ostrich) and IBM XL Fortran for Linux, V15.1
+
+ Debian 8.4 3.16.0-4-amd64 #1 SMP Debian 3.16.36-1 x86_64 GNU/Linux
+ gcc, g++ (Debian 4.9.2-10) 4.9.2
+ GNU Fortran (Debian 4.9.2-10) 4.9.2
+ (cmake and autotools)
+
+ Fedora 24 4.7.2-201.fc24.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
+ gcc, g++ (GCC) 6.1.1 20160621
+ (Red Hat 6.1.1-3)
+ GNU Fortran (GCC) 6.1.1 20160621
+ (Red Hat 6.1.1-3)
+ (cmake and autotools)
+
+ Ubuntu 16.04.1 4.4.0-38-generic #57-Ubuntu SMP x86_64 GNU/Linux
+ gcc, g++ (Ubuntu 5.4.0-6ubuntu1~16.04.2)
+ 5.4.0 20160609
+ GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.2)
+ 5.4.0 20160609
+ (cmake and autotools)
+
+
+Known Problems
+==============
+
+ At present, metadata cache images may not be generated by parallel
+ applications. Parallel applications can read files with metadata cache
+ images, but since this is a collective operation, a deadlock is possible
+ if one or more processes do not participate.
+
+ Three tests fail with OpenMPI 3.0.0/GCC-7.2.0-2.29:
+ testphdf5 (ecdsetw, selnone, cchunk1, cchunk3, cchunk4, and actualio)
+ t_shapesame (sscontig2)
+ t_pflush1/fails on exit
+ The first two tests fail attempting collective writes.
+
+ Known problems in previous releases can be found in the HISTORY*.txt files
+ in the HDF5 source. Please report any new problems found to
+ help@hdfgroup.org.
+
+
+CMake vs. Autotools installations
+=================================
+While both build systems produce similar results, there are differences.
+Each system produces the same set of folders on linux (only CMake works
+on standard Windows); bin, include, lib and share. Autotools places the
+COPYING and RELEASE.txt file in the root folder, CMake places them in
+the share folder.
+
+The bin folder contains the tools and the build scripts. Additionally, CMake
+creates dynamic versions of the tools with the suffix "-shared". Autotools
+installs one set of tools depending on the "--enable-shared" configuration
+option.
+ build scripts
+ -------------
+ Autotools: h5c++, h5cc, h5fc
+ CMake: h5c++, h5cc, h5hlc++, h5hlcc
+
+The include folder holds the header files and the fortran mod files. CMake
+places the fortran mod files into separate shared and static subfolders,
+while Autotools places one set of mod files into the include folder. Because
+CMake produces a tools library, the header files for tools will appear in
+the include folder.
+
+The lib folder contains the library files, and CMake adds the pkgconfig
+subfolder with the hdf5*.pc files used by the bin/build scripts created by
+the CMake build. CMake separates the C interface code from the fortran code by
+creating C-stub libraries for each Fortran library. In addition, only CMake
+installs the tools library. The names of the szip libraries are different
+between the build systems.
+
+The share folder will have the most differences because CMake builds include
+a number of CMake specific files for support of CMake's find_package and support
+for the HDF5 Examples CMake project.
+
+%%%%1.10.3%%%%
+
+HDF5 version 1.10.3 released on 2018-08-21
+================================================================================
+
+
+INTRODUCTION
+
+This document describes the differences between this release and the previous
+HDF5 release. It contains information on the platforms tested and known
+problems in this release. For more details check the HISTORY*.txt files in the
+HDF5 source.
+
+Note that documentation in the links below will be updated at the time of each
+final release.
+
+Links to HDF5 documentation can be found on The HDF5 web page:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5
+
+The official HDF5 releases can be obtained from:
+
+ https://www.hdfgroup.org/downloads/hdf5/
+
+Changes from Release to Release and New Features in the HDF5-1.10.x release series
+can be found at:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5+Application+Developer%27s+Guide
+
+If you have any questions or comments, please send them to the HDF Help Desk:
+
+ help@hdfgroup.org
+
+
+CONTENTS
+
+- New Features
+- Bug Fixes since HDF5-1.10.2
+- Supported Platforms
+- Tested Configuration Features Summary
+- More Tested Platforms
+- Known Problems
+- CMake vs. Autotools installations
+
+
+New Features
+============
+
+ Library
+ -------
+ - Moved the H5DOread/write_chunk() API calls to H5Dread/write_chunk()
+
+ The functionality of the direct chunk I/O calls in the high-level
+ library has been moved to the H5D package in the main library. This
+ will allow using those functions without building the high-level
+ library. The parameters and functionality of the H5D calls are
+ identical to the H5DO calls.
+
+ The original H5DO high-level API calls have been retained, though
+ they are now just wrappers for the H5D calls. They are marked as
+ deprecated and are only available when the library is built with
+ deprecated functions. New code should use the H5D calls for this
+ reason.
+
+ As a part of this work, the following symbols from H5Dpublic.h are no
+ longer used:
+
+ H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME
+ H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME
+ H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME
+ H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME
+ H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME
+ H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME
+ H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME
+
+ And properties with these names are no longer stored in the dataset
+ transfer property lists. The symbols are still defined in H5Dpublic.h,
+ but only when the library is built with deprecated symbols.
+
+ (DER - 2018/05/04)
+
+ Configuration:
+ -------------
+ - Add missing USE_110_API_DEFAULT option.
+
+ Option USE_110_API_DEFAULT sets the default version of
+ versioned APIs. The bin/makevers perl script did not set
+ the maxidx variable correctly when the 1.10 branch was
+ created. This caused the versioning process to always use
+ the latest version of any API.
+
+ (ADB - 2018/08/17, HDFFV-10552)
+
+ - Added configuration checks for the following MPI functions:
+
+ MPI_Mprobe - Used for the Parallel Compression feature
+ MPI_Imrecv - Used for the Parallel Compression feature
+
+ MPI_Get_elements_x - Used for the "big Parallel I/O" feature
+ MPI_Type_size_x - Used for the "big Parallel I/O" feature
+
+ (JTH - 2018/08/02, HDFFV-10512)
+
+ - Added section to the libhdf5.settings file to indicate
+ the status of the Parallel Compression and "big Parallel I/O"
+ features.
+
+ (JTH - 2018/08/02, HDFFV-10512)
+
+ - Add option to execute swmr shell scripts from CMake.
+
+ Option TEST_SHELL_SCRIPTS redirects processing into a
+ separate ShellTests.cmake file for UNIX types. The tests
+ execute the shell scripts if a SH program is found.
+
+ (ADB - 2018/07/16)
+
+
+ C++ Library:
+ ------------
+ - New wrappers
+
+ Added the following items:
+
+ + Class DSetAccPropList for the dataset access property list.
+
+ + Wrapper for H5Dget_access_plist to class DataSet
+ // Gets the access property list of this dataset.
+ DSetAccPropList getAccessPlist() const;
+
+ + Wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList
+ // Sets the raw data chunk cache parameters.
+ void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)
+
+ // Retrieves the raw data chunk cache parameters.
+ void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)
+
+ + New operator!= to class DataType (HDFFV-10472)
+ // Determines whether two datatypes are not the same.
+ bool operator!=(const DataType& compared_type)
+
+ + Wrappers for H5Oget_info2, H5Oget_info_by_name2, and H5Oget_info_by_idx2
+ (HDFFV-10458)
+
+ // Retrieves information about an HDF5 object.
+ void getObjinfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) const;
+
+ // Retrieves information about an HDF5 object, given its name.
+ void getObjinfo(const char* name, H5O_info_t& objinfo,
+ unsigned fields = H5O_INFO_BASIC,
+ const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
+ void getObjinfo(const H5std_string& name, H5O_info_t& objinfo,
+ unsigned fields = H5O_INFO_BASIC,
+ const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
+
+ // Retrieves information about an HDF5 object, given its index.
+ void getObjinfo(const char* grp_name, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
+ unsigned fields = H5O_INFO_BASIC,
+ const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
+ void getObjinfo(const H5std_string& grp_name, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
+ unsigned fields = H5O_INFO_BASIC,
+ const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
+
+ (BMR - 2018/07/22, HDFFV-10150, HDFFV-10458, HDFFV-1047)
+
+
+ Java Library:
+ ----------------
+ - Java HDFLibraryException class
+
+ Change parent class from Exception to RuntimeException.
+
+ (ADB - 2018/07/30, HDFFV-10534)
+
+ - JNI Read and Write
+
+ Refactored variable-length functions, H5DreadVL and H5AreadVL,
+ to correct dataset and attribute reads. New write functions,
+ H5DwriteVL and H5AwriteVL, are under construction.
+
+ (ADB - 2018/06/02, HDFFV-10519)
+
+
+Bug Fixes since HDF5-1.10.2 release
+==================================
+
+ Library
+ -------
+ - Performance issue with H5Oget_info
+
+ H5Oget_info family of routines retrieves information for an object such
+ as object type, access time, number of attributes, and storage space etc.
+ Retrieving all such information regardless is an overkill and causes
+ performance issue when doing so for many objects.
+
+ Add an additional parameter "fields" to the the H5Oget_info family of routines
+ indicating the type of information to be retrieved. The same is done to
+ the H5Ovisit family of routines which recursively visits an object
+ returning object information in a callback function. Both sets of routines
+ are versioned and the corresponding compatibility macros are added.
+
+ The version 2 names of the two sets of routines are:
+ (1) H5Oget_info2, H5Oget_info_by_idx2, H5Oget_info_by_name2
+ (2) H5Ovisit2, H5Ovisit_by_name2
+
+ (VC - 2018/08/15, HDFFV-10180)
+
+ - Test failure due to metadata size in test/vds.c
+
+ The size of metadata from test_api_get_ex_dcpl() in test/vds.c is not as expected
+ because the latest format should be used when encoding the layout for VDS.
+
+ Set the latest format in a temporary fapl and pass the setting to the routines that
+ encode the dataset selection for VDS.
+
+ (VC - 2018/08/14 HDFFV-10469)
+
+ - Java HDF5LibraryException class
+
+ The error minor and major values would be lost after the
+ constructor executed.
+
+ Created two local class variables to hold the values obtained during
+ execution of the constructor. Refactored the class functions to retrieve
+ the class values rather then calling the native functions.
+ The native functions were renamed and called only during execution
+ of the constructor.
+ Added error checking to calling class constructors in JNI classes.
+
+ (ADB - 2018/08/06, HDFFV-10544)
+
+ - Added checks of the defined MPI_VERSION to guard against usage of
+ MPI-3 functions in the Parallel Compression and "big Parallel I/O"
+ features when HDF5 is built with MPI-2. Previously, the configure
+ step would pass but the build itself would fail when it could not
+ locate the MPI-3 functions used.
+
+ As a result of these new checks, HDF5 can again be built with MPI-2,
+ but the Parallel Compression feature will be disabled as it relies
+ on the MPI-3 functions used.
+
+ (JTH - 2018/08/02, HDFFV-10512)
+
+ - User's patches: CVEs
+
+ The following patches have been applied:
+
+ CVE-2018-11202 - NULL pointer dereference was discovered in
+ H5S_hyper_make_spans in H5Shyper.c (HDFFV-10476)
+ https://security-tracker.debian.org/tracker/CVE-2018-11202
+ https://cve.mitre.org/cgi-bin/cvename.cgi?name=3DCVE-2018-11202
+
+ CVE-2018-11203 - A division by zero was discovered in
+ H5D__btree_decode_key in H5Dbtree.c (HDFFV-10477)
+ https://security-tracker.debian.org/tracker/CVE-2018-11203
+ https://cve.mitre.org/cgi-bin/cvename.cgi?name=3DCVE-2018-11203
+
+ CVE-2018-11204 - A NULL pointer dereference was discovered in
+ H5O__chunk_deserialize in H5Ocache.c (HDFFV-10478)
+ https://security-tracker.debian.org/tracker/CVE-2018-11204
+ https://cve.mitre.org/cgi-bin/cvename.cgi?name=3DCVE-2018-11204
+
+ CVE-2018-11206 - An out of bound read was discovered in
+ H5O_fill_new_decode and H5O_fill_old_decode in H5Ofill.c
+ (HDFFV-10480)
+ https://security-tracker.debian.org/tracker/CVE-2018-11206
+ https://cve.mitre.org/cgi-bin/cvename.cgi?name=3DCVE-2018-11206
+
+ CVE-2018-11207 - A division by zero was discovered in
+ H5D__chunk_init in H5Dchunk.c (HDFFV-10481)
+ https://security-tracker.debian.org/tracker/CVE-2018-11207
+ https://cve.mitre.org/cgi-bin/cvename.cgi?name=3DCVE-2018-11207
+
+ (BMR - 2018/7/22, PR#s: 1134 and 1139,
+ HDFFV-10476, HDFFV-10477, HDFFV-10478, HDFFV-10480, HDFFV-10481)
+
+ - H5Adelete
+
+ H5Adelete failed when deleting the last "large" attribute that
+ is stored densely via fractal heap/v2 b-tree.
+
+ After removing the attribute, update the ainfo message. If the
+ number of attributes goes to zero, remove the message.
+
+ (VC - 2018/07/20, HDFFV-9277)
+
+ - A bug was discovered in the parallel library which caused partial
+ parallel reads of filtered datasets to return incorrect data. The
+ library used the incorrect dataspace for each chunk read, causing
+ the selection used in each chunk to be wrong.
+
+ The bug was not caught during testing because all of the current
+ tests which do parallel reads of filtered data read all of the data
+ using an H5S_ALL selection. Several tests were added which exercise
+ partial parallel reads.
+
+ (JTH - 2018/07/16, HDFFV-10467)
+
+ - A bug was discovered in the parallel library which caused parallel
+ writes of filtered datasets to trigger an assertion failure in the
+ file free space manager.
+
+ This occurred when the filter used caused chunks to repeatedly shrink
+ and grow over the course of several dataset writes. The previous chunk
+ information, such as the size of the chunk and the offset in the file,
+ was being cached and not updated after each write, causing the next write
+ to the chunk to retrieve the incorrect cached information and run into
+ issues when reallocating space in the file for the chunk.
+
+ (JTH - 2018/07/16, HDFFV-10509)
+
+ - A bug was discovered in the parallel library which caused the
+ H5D__mpio_array_gatherv() function to allocate too much memory.
+
+ When the function is called with the 'allgather' parameter set
+ to a non-true value, the function will receive data from all MPI
+ ranks and gather it to the single rank specied by the 'root'
+ parameter. However, the bug in the function caused memory for
+ the received data to be allocated on all MPI ranks, not just the
+ singular rank specified as the receiver. In some circumstances,
+ this would cause an application to fail due to the large amounts
+ of memory being allocated.
+
+ (JTH - 2018/07/16, HDFFV-10467)
+
+ - Error checks in h5stat and when decoding messages
+
+ h5stat exited with seg fault/core dumped when
+ errors are encountered in the internal library.
+
+ Add error checks and --enable-error-stack option to h5stat.
+ Add range checks when decoding messages: old fill value, old
+ layout and refcount.
+
+ (VC - 2018/07/11, HDFFV-10333)
+
+ - If an HDF5 file contains a malformed compound datatype with a
+ suitably large offset, the type conversion code can run off
+ the end of the type conversion buffer, causing a segmentation
+ fault.
+
+ This issue was reported to The HDF Group as issue #CVE-2017-17507.
+
+ NOTE: The HDF5 C library cannot produce such a file. This condition
+ should only occur in a corrupt (or deliberately altered) file
+ or a file created by third-party software.
+
+ THE HDF GROUP WILL NOT FIX THIS BUG AT THIS TIME
+
+ Fixing this problem would involve updating the publicly visible
+ H5T_conv_t function pointer typedef and versioning the API calls
+ which use it. We normally only modify the public API during
+ major releases, so this bug will not be fixed at this time.
+
+ (DER - 2018/02/26, HDFFV-10356)
+
+
+ Configuration
+ -------------
+ - Applied patches to address Cywin build issues
+
+ There were three issues for Cygwin builds:
+ - Shared libs were not built.
+ - The -std=c99 flag caused a SIG_SETMASK undeclared error.
+ - Undefined errors when buildbing test shared libraries.
+
+ Patches to address these issues were received and incorporated in this version.
+
+ (LRK - 2018/07/18, HDFFV-10475)
+
+ - The --enable-debug/production configure flags are listed as 'deprecated'
+ when they should really be listed as 'removed'.
+
+ In the autotools overhaul several years ago, we removed these flags and
+ implemented a new --enable-build-mode= flag. This was done because we
+ changed the semantics of the modes and didn't want users to silently
+ be exposed to them. The newer system is also more flexible and us to
+ add other modes (like 'clean').
+
+ The --enable-debug/production flags are now listed as removed.
+
+ (DER - 2018/05/31, HDFFV-10505)
+
+ - Moved the location of gcc attribute.
+
+ The gcc attribute(no_sanitize), named as the macro HDF_NO_UBSAN,
+ was located after the function name. Builds with GCC 7 did not
+ indicate any problem, but GCC 8 issued errors. Moved the
+ attribute before the function name, as required.
+
+ (ADB - 2018/05/22, HDFFV-10473)
+
+ - Reworked java test suite into individual JUnit tests.
+
+ Testing the whole suite of java unit tests in a single JUnit run
+ made it difficult to determine actual failures when tests would fail.
+ Running each file set of tests individually, allows individual failures
+ to be diagnosed easier. A side benefit is that tests for optional components
+ of the library can be disabled if not configured.
+
+ (ADB - 2018/05/16, HDFFV-9739)
+
+ - Converted CMake global commands ADD_DEFINITIONS and INCLUDE_DIRECTORIES
+ to use target_* type commands. This change modernizes the CMake usage
+ in the HDF5 library.
+
+ In addition, there is the intention to convert to generator expressions,
+ where possible. The exception is Fortran FLAGS on Windows Visual Studio.
+ The HDF macros TARGET_C_PROPERTIES and TARGET_FORTRAN_PROPERTIES have
+ been removed with this change in usage.
+
+ The additional language (C++ and Fortran) checks have also been localized
+ to only be checked when that language is enabled.
+
+ (ADB - 2018/05/08)
+
+
+ Performance
+ -------------
+ - Revamped internal use of DXPLs, improving performance
+
+ (QAK - 2018/05/20)
+
+
+ Fortran
+ --------
+ - Fixed issue with h5fget_obj_count_f and using a file id of H5F_OBJ_ALL_F not
+ returning the correct count.
+
+ (MSB - 2018/5/15, HDFFV-10405)
+
+
+ C++ APIs
+ --------
+ - Adding default arguments to existing functions
+
+ Added the following items:
+ + Two more property list arguments are added to H5Location::createDataSet:
+ const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
+ const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT
+
+ + One more property list argument is added to H5Location::openDataSet:
+ const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
+
+ (BMR - 2018/07/21, PR# 1146)
+
+ - Improvement C++ documentation
+
+ Replaced the table in main page of the C++ documentation from mht to htm format
+ for portability.
+
+ (BMR - 2018/07/17, PR# 1141)
+
+
+Supported Platforms
+===================
+
+ Linux 2.6.32-696.16.1.el6.ppc64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ #1 SMP ppc64 GNU/Linux g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ (ostrich) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
+ IBM XL C/C++ V13.1
+ IBM XL Fortran V15.1
+
+ Linux 3.10.0-327.10.1.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ (kituo/moohan) Version 4.8.5 20150623 (Red Hat 4.8.5-4)
+ Version 4.9.3, Version 5.2.0
+ Intel(R) C (icc), C++ (icpc), Fortran (icc)
+ compilers:
+ Version 17.0.0.098 Build 20160721
+ MPICH 3.1.4 compiled with GCC 4.9.3
+
+ SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc
+ (emu) Sun Fortran 95 8.6 SunOS_sparc
+ Sun C++ 5.12 SunOS_sparc
+
+ Windows 7 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
+
+ Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
+ Visual Studio 2013 w/ Intel Fortran 15 (cmake)
+ Visual Studio 2015 w/ Intel Fortran 16 (cmake)
+ Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake)
+ Visual Studio 2015 w/ MSMPI 8 (cmake)
+
+ Windows 10 Visual Studio 2015 w/ Intel Fortran 18 (cmake)
+
+ Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 18 (cmake)
+ Visual Studio 2017 w/ Intel Fortran 18 (cmake)
+
+ Mac OS X Yosemite 10.10.5 Apple clang/clang++ version 6.1 from Xcode 7.0
+ 64-bit gfortran GNU Fortran (GCC) 4.9.2
+ (osx1010dev/osx1010test) Intel icc/icpc/ifort version 15.0.3
+
+ Mac OS X El Capitan 10.11.6 Apple clang/clang++ version 7.3.0 from Xcode 7.3
+ 64-bit gfortran GNU Fortran (GCC) 5.2.0
+ (osx1011dev/osx1011test) Intel icc/icpc/ifort version 16.0.2
+
+ Mac OS Sierra 10.12.6 Apple LLVM version 8.1.0 (clang/clang++-802.0.42)
+ 64-bit gfortran GNU Fortran (GCC) 7.1.0
+ (swallow/kite) Intel icc/icpc/ifort version 17.0.2
+
+Tested Configuration Features Summary
+=====================================
+
+ In the tables below
+ y = tested
+ n = not tested in this release
+ C = Cluster
+ W = Workstation
+ x = not working in this release
+ dna = does not apply
+ ( ) = footnote appears below second table
+ <blank> = testing incomplete on this feature or platform
+
+Platform C F90/ F90 C++ zlib SZIP
+ parallel F2003 parallel
+Solaris2.11 32-bit n y/y n y y y
+Solaris2.11 64-bit n y/n n y y y
+Windows 7 y y/y n y y y
+Windows 7 x64 y y/y y y y y
+Windows 7 Cygwin n y/n n y y y
+Windows 7 x64 Cygwin n y/n n y y y
+Windows 10 y y/y n y y y
+Windows 10 x64 y y/y n y y y
+Mac OS X Mavericks 10.9.5 64-bit n y/y n y y y
+Mac OS X Yosemite 10.10.5 64-bit n y/y n y y y
+Mac OS X El Capitan 10.11.6 64-bit n y/y n y y y
+Mac OS Sierra 10.12.6 64-bit n y/y n y y y
+CentOS 7.2 Linux 2.6.32 x86_64 PGI n y/y n y y y
+CentOS 7.2 Linux 2.6.32 x86_64 GNU y y/y y y y y
+CentOS 7.2 Linux 2.6.32 x86_64 Intel n y/y n y y y
+Linux 2.6.32-573.18.1.el6.ppc64 n y/y n y y y
+
+
+Platform Shared Shared Shared Thread-
+ C libs F90 libs C++ libs safe
+Solaris2.11 32-bit y y y y
+Solaris2.11 64-bit y y y y
+Windows 7 y y y y
+Windows 7 x64 y y y y
+Windows 7 Cygwin n n n y
+Windows 7 x64 Cygwin n n n y
+Windows 10 y y y y
+Windows 10 x64 y y y y
+Mac OS X Mavericks 10.9.5 64-bit y n y y
+Mac OS X Yosemite 10.10.5 64-bit y n y y
+Mac OS X El Capitan 10.11.6 64-bit y n y y
+Mac OS Sierra 10.12.6 64-bit y n y y
+CentOS 7.2 Linux 2.6.32 x86_64 PGI y y y n
+CentOS 7.2 Linux 2.6.32 x86_64 GNU y y y y
+CentOS 7.2 Linux 2.6.32 x86_64 Intel y y y n
+Linux 2.6.32-573.18.1.el6.ppc64 y y y n
+
+Compiler versions for each platform are listed in the preceding
+"Supported Platforms" table.
+
+
+More Tested Platforms
+=====================
+The following platforms are not supported but have been tested for this release.
+
+ Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ (mayll/platypus) Version 4.4.7 20120313
+ Version 4.9.3, 5.3.0, 6.2.0
+ PGI C, Fortran, C++ for 64-bit target on
+ x86-64;
+ Version 17.10-0
+ Intel(R) C (icc), C++ (icpc), Fortran (icc)
+ compilers:
+ Version 17.0.4.196 Build 20170411
+ MPICH 3.1.4 compiled with GCC 4.9.3
+
+ Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
+ #1 SMP x86_64 GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
+ (jelly) with NAG Fortran Compiler Release 6.1(Tozai)
+ GCC Version 7.1.0
+ OpenMPI 3.0.0-GCC-7.2.0-2.29,
+ 3.1.0-GCC-7.2.0-2.29
+ Intel(R) C (icc) and C++ (icpc) compilers
+ Version 17.0.0.098 Build 20160721
+ with NAG Fortran Compiler Release 6.1(Tozai)
+
+ Linux 3.10.0-327.10.1.el7 MPICH 3.2 compiled with GCC 5.3.0
+ #1 SMP x86_64 GNU/Linux
+ (moohan)
+
+ Linux 2.6.32-573.18.1.el6.ppc64 MPICH mpich 3.1.4 compiled with
+ #1 SMP ppc64 GNU/Linux IBM XL C/C++ for Linux, V13.1
+ (ostrich) and IBM XL Fortran for Linux, V15.1
+
+ Debian 8.4 3.16.0-4-amd64 #1 SMP Debian 3.16.36-1 x86_64 GNU/Linux
+ gcc, g++ (Debian 4.9.2-10) 4.9.2
+ GNU Fortran (Debian 4.9.2-10) 4.9.2
+ (cmake and autotools)
+
+ Fedora 24 4.7.2-201.fc24.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
+ gcc, g++ (GCC) 6.1.1 20160621
+ (Red Hat 6.1.1-3)
+ GNU Fortran (GCC) 6.1.1 20160621
+ (Red Hat 6.1.1-3)
+ (cmake and autotools)
+
+ Ubuntu 16.04.1 4.4.0-38-generic #57-Ubuntu SMP x86_64 GNU/Linux
+ gcc, g++ (Ubuntu 5.4.0-6ubuntu1~16.04.2)
+ 5.4.0 20160609
+ GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.2)
+ 5.4.0 20160609
+ (cmake and autotools)
+
+
+Known Problems
+==============
+
+ At present, metadata cache images may not be generated by parallel
+ applications. Parallel applications can read files with metadata cache
+ images, but since this is a collective operation, a deadlock is possible
+ if one or more processes do not participate.
+
+ Three tests fail with OpenMPI 3.0.0/GCC-7.2.0-2.29:
+ testphdf5 (ecdsetw, selnone, cchunk1, cchunk3, cchunk4, and actualio)
+ t_shapesame (sscontig2)
+ t_pflush1/fails on exit
+ The first two tests fail attempting collective writes.
+
+ Known problems in previous releases can be found in the HISTORY*.txt files
+ in the HDF5 source. Please report any new problems found to
+ help@hdfgroup.org.
+
+
+CMake vs. Autotools installations
+=================================
+While both build systems produce similar results, there are differences.
+Each system produces the same set of folders on linux (only CMake works
+on standard Windows); bin, include, lib and share. Autotools places the
+COPYING and RELEASE.txt file in the root folder, CMake places them in
+the share folder.
+
+The bin folder contains the tools and the build scripts. Additionally, CMake
+creates dynamic versions of the tools with the suffix "-shared". Autotools
+installs one set of tools depending on the "--enable-shared" configuration
+option.
+ build scripts
+ -------------
+ Autotools: h5c++, h5cc, h5fc
+ CMake: h5c++, h5cc, h5hlc++, h5hlcc
+
+The include folder holds the header files and the fortran mod files. CMake
+places the fortran mod files into separate shared and static subfolders,
+while Autotools places one set of mod files into the include folder. Because
+CMake produces a tools library, the header files for tools will appear in
+the include folder.
+
+The lib folder contains the library files, and CMake adds the pkgconfig
+subfolder with the hdf5*.pc files used by the bin/build scripts created by
+the CMake build. CMake separates the C interface code from the fortran code by
+creating C-stub libraries for each Fortran library. In addition, only CMake
+installs the tools library. The names of the szip libraries are different
+between the build systems.
+
+The share folder will have the most differences because CMake builds include
+a number of CMake specific files for support of CMake's find_package and support
+for the HDF5 Examples CMake project.
+
+
%%%%1.10.2%%%%
HDF5 version 1.10.2 released on 2018-03-29
diff --git a/release_docs/INSTALL_CMake.txt b/release_docs/INSTALL_CMake.txt
index 233c2cc..4bba5e8 100644
--- a/release_docs/INSTALL_CMake.txt
+++ b/release_docs/INSTALL_CMake.txt
@@ -651,7 +651,7 @@ HDF5_PACKAGE_EXTLIBS "CPACK - include external libraries"
HDF5_STRICT_FORMAT_CHECKS "Whether to perform strict file format checks" OFF
HDF_TEST_EXPRESS "Control testing framework (0-3)" "0"
HDF5_TEST_VFD "Execute tests with different VFDs" OFF
-HDF5_TEST_VOL "Execute tests with different VOL connectors" OFF
+HDF5_TEST_PASSTHROUGH_VOL "Execute tests with different passthrough VOL connectors" OFF
HDF5_USE_16_API_DEFAULT "Use the HDF5 1.6.x API by default" OFF
HDF5_USE_18_API_DEFAULT "Use the HDF5 1.8.x API by default" OFF
HDF5_USE_110_API_DEFAULT "Use the HDF5 1.10.x API by default" OFF
diff --git a/release_docs/README_HDF5_CMake b/release_docs/README_HDF5_CMake
new file mode 100644
index 0000000..a2e7dce
--- /dev/null
+++ b/release_docs/README_HDF5_CMake
@@ -0,0 +1,23 @@
+This tar file contains
+
+ build-unix.sh script to build HDF5 with CMake on unix machines
+ build-unix-hpc.sh script to build HDF5 with CMake on unix machines and run
+ tests with batch scripts (sbatch).
+ CTestScript.cmake
+ HDF5config.cmake CMake scripts for building HDF5
+ HDF5options.cmake
+ hdf5-1.11.4 HDF5 1.11.4 source
+ SZip.tar.gz source for building SZIP
+ ZLib.tar.gz source for building ZLIB
+
+For more information about building HDF5 with CMake, see USING_HDF5_CMake.txt in
+hdf5-1.11.4/release_docs, or
+https://portal.hdfgroup.org/display/support/Building+HDF5+with+CMake.
+
+For more information about building HDF5 with CMake on HPC machines, including
+cross compiling on Cray XC40, see README_HPC in hdf5-1.11.4/release_docs.
+
+
+
+
+
diff --git a/release_docs/README_HPC b/release_docs/README_HPC
index bdeab67..67a5d6c 100644
--- a/release_docs/README_HPC
+++ b/release_docs/README_HPC
@@ -1,79 +1,206 @@
-HDF5 version 1.11.4 currently under development
-
-HDF5 source tar files with the HPC prefix are intended for use on clusters where
-configuration and build steps will be done on a login node and executable and
-lib files that are built will be run on compute nodes.
-
-Note these differences from the regular CMake tar and zip files:
- - Test programs produced by this tar file will be run using batch scripts.
- - Serial and parallel HDF5options.cmake files, using parallel options by default.
-
-Note also that options are now available in HDF5 source to facilitate use of
-toolchain files for using cross compilers available on login nodes to compile
-HDF5 for compute nodes.
-
-Instructions to configure build and test HDF5 using CMake:
-
-1. The cmake version must be 3.10 or later (cmake --version).
-2. Load or switch modules and set CC, FC, CXX for compilers desired.
-3. run build-unix.sh to configure, build, test and package HDF5 with CMake.
-
-Contents:
-
-build-unix.sh Simple script for running CMake to configure, build,
- test, and package HDF5.
-CTestScript.cmake CMake script to configure, build, test and package
- HDF5.
-hdf5-<version> HDF5 source for <version>.
-HDF5config.cmake CMake script to configure, build, test and package
- HDF5.
-HDF5Examples Source for HDF5 Examples.
-HDF5options.cmake symlink to parallel or serial HDF5options.cmake files.
- Default is parallel file, which builds and tests both
- serial and parallel C and Fortran wrappers.
- To build serial only, C Fortran and C++ wrappers, delete
- The HDF5options.cmake link and run
- 'ln -s ser-HDF5options.cmake HDF5options.cmake' to switch.
-par-HDF5options.cmake Options file for HDF5 serial and parallel build and test.
-ser-HDF5options.cmake Options file for HDF5 serial only build and test.
-SZip.tar.gz Source for building SZip.
-ZLib.tar.gz Source for buildng Zlib.
-
-
-To cross compile with this HPC-CMake tar.gz HDF5 source file:
-On Cray XC40 haswell login node for knl compute nodes using CMake and Cray modules:
- 1. Uncomment line in HDF5options.txt to use a toolchain file - line 106 for
- config/toolchain/crayle.cmake.
- 2. Uncomment lines 110, 111, and 115 - 122 of HDF5options.cmake.
- Line 110 allows configuring to complete on the haswell node.
- Line 111 switches the compiler to build files for knl nodes.
- Lines 115 - 122 set up test files to use sbatch to run build tests
- in batch jobs on a knl compute node with 6 processes.
- 3. Compiler module may be the default PrgEnv-intel/6.0.4 to use
- intel/18.0.2 or other intel, PrgEnv-cray/6.0.4 to use cce/8.7.4,
- or PrgEnv-gnu/6.0.4 for GCC compilers. PrgEnv-pgi/6.0.4 is also
- available but has not been tested with this tar file.
- 4. These CMake options are set in config/toolchain/crayle.cmake:
- set(CMAKE_SYSTEM_NAME Linux)
- set(CMAKE_COMPILER_VENDOR "CrayLinuxEnvironment")
- set(CMAKE_C_COMPILER cc)
- set(CMAKE_CXX_COMPILER c++)
- set(CMAKE_Fortran_COMPILER ftn)
- set(CMAKE_CROSSCOMPILING_EMULATOR "")
-
- 5. Settings for two other cross-compiling options are also in the
- config/toolchain files which do not seem to be necessary with the
- Cray PrgEnv-* modules
- a. HDF5_USE_PREGEN. This option, along with the HDF5_USE_PREGEN_DIR
- CMake variable would allow the use of an appropriate H5Tinit.c
- file with type information generated on a compute node to be used
- when cross compiling for those compute nodes. The use of the
- variables in lines 110 and 111 of HDF5options.cmake file seem to
- preclude needing this option with the available Cray modules and
- CMake options.
- b. HDF5_BATCH_H5DETECT and associated CMake variables. This option
- when properly configured will run H5detect in a batch job on a
- compute node at the beginning of the CMake build process. It
- was also found to be unnecessary with the available Cray modules
- and CMake options.
--
+************************************************************************
+* Using CMake to build and test HDF5 source on HPC machines *
+************************************************************************
+
+ Contents
+
+Section I: Prerequisites
+Section II: Obtain HDF5 source
+Section III: Using ctest command to build and test
+Section IV: Cross compiling
+Section V: Manual alternatives
+Section VI: Other cross compiling options
+
+************************************************************************
+
+========================================================================
+I. Prerequisites
+========================================================================
+ 1. Create a working directory that is accessible from the compute nodes for
+ running tests; the working directory should be in a scratch space or a
+ parallel file system space since testing will use this space. Building
+ from HDF5 source in a 'home' directory typically results in test
+ failures and should be avoided.
+
+ 2. Load modules for desired compilers, module for cmake version 3.10 or greater,
+ and set any needed environment variables for compilers (i.e., CC, FC, CXX).
+ Unload any problematic modules (i.e., craype-hugepages2M).
+
+========================================================================
+II. Obtain HDF5 source
+========================================================================
+Obtain HDF5 source code from the HDF5 repository using a git command or
+from a release tar file in a working directory:
+
+ git clone https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5.git
+ [-b branch] [source directory]
+
+If no branch is specified, then the 'develop' version will be checked out.
+If no source directory is specified, then the source will be located in the
+'hdf5' directory. The Cmake scripts expect the source to be in a directory
+named hdf5-<version string>, where 'version string' uses the format '1.xx.xx'.
+For example, for the current 'develop' version, the "hdf5" directory should
+be renamed "hdf5-1.11.4", or for the first hdf5_1_10_5 pre-release version,
+it should be renamed "hdf5-1.10.5-pre1".
+
+If the version number is not known a priori, the version string
+can be obtained by running bin/h5vers in the top level directory of the source clone, and
+the source directory renamed 'hdf5-<version string>'.
+
+Release or snapshot tar files may also be extracted and used.
+
+========================================================================
+III. Using ctest command to build and test
+========================================================================
+
+The ctest command [1]:
+
+ ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log
+
+will configure, build, test and package HDF5 from the downloaded source
+after the setup steps outlined below are followed.
+
+CMake option variables are available to allow running test programs in batch
+scripts on compute nodes and to cross-compile for compute node hardware using
+a cross-compiling emulator. The setup steps will make default settings for
+parallel or serial only builds available to the CMake command.
+
+ 1. For the current 'develop' version the "hdf5" directory should be renamed
+ "hdf5-1.11.4".
+
+ 2. Three cmake script files need to be copied to the working directory, or
+ have symbolic links to them, created in the working directory:
+
+ hdf5-1.11.4/config/cmake/scripts/HDF5config.cmake
+ hdf5-1.11.4/config/cmake/scripts/CTestScript.cmake
+ hdf5-1.11.4/config/cmake/scripts/HDF5options.cmake
+
+ should be copied to the working directory.
+
+ 3. The resulting contents of the working directory are then:
+
+ CTestScript.cmake
+ HDF5config.cmake
+ HDF5options.cmake
+ hdf5-1.11.4
+
+ Additionally, when the ctest command runs [1], it will add a build directory
+ in the working directory.
+
+ 4. The following options (among others) can be added to the ctest
+ command [1], following '-S HDF5config.cmake,' and separated by ',':
+
+ HPC=sbatch (or 'bsub' or 'raybsub') indicates which type of batch
+ files to use for running tests. If omitted, test
+ will run on the local machine or login node.
+
+ KNL=true to cross-compile for KNL compute nodes on CrayXC40
+ (see section IV)
+
+ MPI=true enables parallel, disables c++, java, and threadsafe
+
+ LOCAL_BATCH_SCRIPT_ARGS="--account=<account#>" to supply user account
+ information for batch jobs
+
+ The HPC options will add BUILD_GENERATOR=Unix for the three HPC options.
+ An example ctest command for a parallel build on a system using sbatch is
+
+ ctest -S HDF5config.cmake,HPC=sbatch,MPI=true -C Release -V -O hdf5.log
+
+ Adding the option 'KNL=true' to the above list will compile for KNL nodes,
+ for example, on 'mutrino' and other CrayXC40 machines.
+
+ Changing -V to -VV will produce more logging information in HDF5.log.
+
+ More detailed CMake information can be found in the HDF5 source in
+ release_docs/INSTALL_CMake.txt.
+
+========================================================================
+IV. Cross-compiling
+========================================================================
+For cross-compiling on Cray, set environment variables CC=cc, FC=ftn
+and CXX=CC (for c++) after all compiler modules are loaded since switching
+compiler modules may unset or reset these variables.
+
+CMake provides options for cross-compiling. To cross-compile for KNL hardware
+on mutrino and other CrayXC40 machines, add HPC=sbatch,KNL=true to the
+ctest command line. This will set the following options from the
+config/cmake/scripts/HPC/sbatch-HDF5options.cmake file:
+
+ set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
+ set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+ set (LOCAL_BATCH_SCRIPT_NAME "knl_ctestS.sl")
+ set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "knl_ctestP.sl")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+
+On the Cray XC40 the craype-haswell module is needed for configuring, and the
+craype-mic-knl module is needed for building to run on the KNL nodes. CMake
+with the above options will swap modules after configuring is complete,
+but before compiling programs for KNL.
+
+The sbatch script arguments for running jobs on KNL nodes may differ on CrayXC40
+machines other than mutrino. The batch scripts knl_ctestS.sl and knl_ctestP.sl
+have the correct arguments for mutrino: "#SBATCH -p knl -C quad,cache". For
+cori, another CrayXC40, that line is replaced by "#SBATCH -C knl,quad,cache".
+For cori (and other machines), the values in LOCAL_BATCH_SCRIPT_NAME and
+LOCAL_BATCH_SCRIPT_PARALLEL_NAME in the config/cmake/scripts/HPC/sbatch-HDF5options.cmake
+file can be replaced by cori_knl_ctestS.sl and cori_knl_ctestS.sl, or the lines
+can be edited in the batch files in hdf5-1.11.4/bin/batch.
+
+========================================================================
+V. Manual alternatives
+========================================================================
+If using ctest is undesirable, one can create a build directory and run the cmake
+configure command, for example
+
+"/projects/Mutrino/hpcsoft/cle6.0/common/cmake/3.10.2/bin/cmake"
+-C "<working directory>/hdf5-1.11.4/config/cmake/cacheinit.cmake"
+-DCMAKE_BUILD_TYPE:STRING=Release -DHDF5_BUILD_FORTRAN:BOOL=ON
+-DHDF5_BUILD_JAVA:BOOL=OFF
+-DCMAKE_INSTALL_PREFIX:PATH=<working directory>/HDF_Group/HDF5/1.11.4
+-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF
+-DHDF5_ENABLE_PARALLEL:BOOL=ON -DHDF5_BUILD_CPP_LIB:BOOL=OFF
+-DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_THREADSAFE:BOOL=OFF
+-DHDF5_PACKAGE_EXTLIBS:BOOL=ON -DLOCAL_BATCH_TEST:BOOL=ON
+-DMPIEXEC_EXECUTABLE:STRING=srun -DMPIEXEC_NUMPROC_FLAG:STRING=-n
+-DMPIEXEC_MAX_NUMPROCS:STRING=6
+-DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake
+-DLOCAL_BATCH_SCRIPT_NAME:STRING=knl_ctestS.sl
+-DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=knl_ctestP.sl -DSITE:STRING=mutrino
+-DBUILDNAME:STRING=par-knl_GCC493-SHARED-Linux-4.4.156-94.61.1.16335.0.PTF.1107299-default-x86_64
+"-GUnix Makefiles" "" "<working directory>/hdf5-1.11.4"
+
+followed by make and batch jobs to run tests.
+
+To cross-compile on CrayXC40, run the configure command with the craype-haswell
+module loaded, then switch to the craype-mic-knl module for the build process.
+
+Tests on machines using slurm can be run with
+
+"sbatch -p knl -C quad,cache ctestS.sl"
+
+or
+
+"sbatch -p knl -C quad,cache ctestP.sl"
+
+for parallel builds.
+
+Tests on machines using LSF will typically use "bsub ctestS.lsf", etc.
+
+========================================================================
+VI. Other cross compiling options
+========================================================================
+Settings for two other cross-compiling options are also in the config/toolchain
+files which do not seem to be necessary with the Cray PrgEnv-* modules
+
+1. HDF5_USE_PREGEN. This option, along with the HDF5_USE_PREGEN_DIR CMake
+ variable would allow the use of an appropriate H5Tinit.c file with type
+ information generated on a compute node to be used when cross compiling
+ for those compute nodes. The use of the variables in lines 110 and 111
+ of HDF5options.cmake file seem to preclude needing this option with the
+ available Cray modules and CMake option.
+
+2. HDF5_BATCH_H5DETECT and associated CMake variables. This option when
+ properly configured will run H5detect in a batch job on a compute node
+ at the beginning of the CMake build process. It was also found to be
+ unnecessary with the available Cray modules and CMake options.
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index f9b2362..647cb8f 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -1,4 +1,4 @@
- version 1.11.4 currently under development
+HDF5 version 1.11.6 currently under development
================================================================================
@@ -48,6 +48,36 @@ New Features
Configuration:
-------------
+ - Add option to build only shared libs
+
+ A request was made to prevent building static libraries and only build
+ shared. A new option was added to CMake, ONLY_SHARED_LIBS, which will
+ skip building static libraries. Certain utility functions will build with
+ static libs but are not published. Tests are adjusted to use the correct
+ libraries.
+
+ (ADB - 2019/06/12, HDFFV-10805)
+
+ - Add options to enable or disable building tools and tests
+
+ Configure options --enable-tests and --enable-tools were added for
+ autotools configure. These options are enabled by default, and can be
+ disabled with either --disable-tests (or tools) or --enable-tests=no
+ (or --enable-tools=no). Build time is reduced ~20% when tools are
+ disabled, 35% when tests are disabled, 45% when both are disabled.
+ Reenabling them after the initial build requires running configure
+ again with the option(s) enabled.
+
+ (LRK - 2019/06/12, HDFFV-9976)
+
+ - Change tools test that test the error stack
+
+ There are some use cases which can cause the error stack of tools to be
+ different then the expected. These tests now use grepTest.cmake, this was
+ changed to allow the error file to be searched for an expected string.
+
+ (ADB - 2019/04/15, HDFFV-10741)
+
- Keep stderr and stdout separate in tests
Changed test handling of output capture. Tests now keep the stderr
@@ -122,6 +152,14 @@ New Features
Library:
--------
+ - Improved the performance of virtual dataset I/O
+
+ Refactored the internal dataspace routines used by the virtual dataset
+ code to improve performance, especially when one of the selections
+ involved is very long and non-contiguous.
+
+ (NAF - 2019/05/31, HDFFV-10693)
+
- Allow pre-generated H5Tinit.c and H5make_libsettings.c to be used.
Rather than always running H5detect and generating H5Tinit.c and
@@ -135,6 +173,14 @@ New Features
(DER - 2018/12/08, HDFFV-10252)
+ - Added the ability to open files with UTF-8 file names on Windows.
+
+ The POSIX open(2) API call on Windows is limited to ASCII
+ file names. The library has been updated to convert incoming file
+ names to UTF-16 (via MultiByteToWideChar(CP_UTF8, ...) and use
+ _wopen() instead.
+
+ (DER - 2019/03/15, HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691)
Parallel Library:
-----------------
@@ -154,8 +200,8 @@ New Features
- Changed the default behavior in parallel when reading the same dataset in its entirely
(i.e. H5S_ALL dataset selection) which is being read by all the processes collectively.
The dataset mush be contiguous, less than 2GB, and of an atomic datatype.
- The new behavior is the HDF5 library will use an MPI_Bcast to pass the data read from
- the disk by the root process to the remain processes in the MPI communicator associated
+ The new behavior is the HDF5 library will use an MPI_Bcast to pass the data read from
+ the disk by the root process to the remain processes in the MPI communicator associated
with the HDF5 file.
(MSB - 2019/01/02, HDFFV-10652)
@@ -170,66 +216,34 @@ New Features
- Added new Fortran API, H5gmtime, which converts (C) 'time_t' structure
to Fortran DATE AND TIME storage format.
-
+
(MSB, 2019/01/08, HDFFV-10443)
- - Added new Fortran 'fields' optional parameter to: h5ovisit_f, h5oget_info_by_name_f,
+ - Added new Fortran 'fields' optional parameter to: h5ovisit_f, h5oget_info_by_name_f,
h5oget_info, h5oget_info_by_idx and h5ovisit_by_name_f.
(MSB, 2019/01/08, HDFFV-10443)
C++ Library:
------------
- - New wrappers
-
- Added the following items:
-
- + Class DSetAccPropList for the dataset access property list.
-
- + Wrapper for H5Dget_access_plist to class DataSet
- // Gets the access property list of this dataset.
- DSetAccPropList getAccessPlist() const;
-
- + Wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList
- // Sets the raw data chunk cache parameters.
- void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)
+ - Added new wrapper for H5Ovisit2()
+ H5Object::visit()
- // Retrieves the raw data chunk cache parameters.
- void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)
+ (BMR - 2019/02/14, HDFFV-10532)
- + New operator!= to class DataType (HDFFV-10472)
- // Determines whether two datatypes are not the same.
- bool operator!=(const DataType& compared_type)
+ - Added new wrappers for H5Pset/get_create_intermediate_group()
+ LinkCreatPropList::setCreateIntermediateGroup()
+ LinkCreatPropList::getCreateIntermediateGroup()
- + Wrappers for H5Oget_info2, H5Oget_info_by_name2, and H5Oget_info_by_idx2
- (HDFFV-10458)
-
- // Retrieves information about an HDF5 object.
- void getObjinfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) const;
-
- // Retrieves information about an HDF5 object, given its name.
- void getObjinfo(const char* name, H5O_info_t& objinfo,
- unsigned fields = H5O_INFO_BASIC,
- const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
- void getObjinfo(const H5std_string& name, H5O_info_t& objinfo,
- unsigned fields = H5O_INFO_BASIC,
- const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
-
- // Retrieves information about an HDF5 object, given its index.
- void getObjinfo(const char* grp_name, H5_index_t idx_type,
- H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
- unsigned fields = H5O_INFO_BASIC,
- const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
- void getObjinfo(const H5std_string& grp_name, H5_index_t idx_type,
- H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
- unsigned fields = H5O_INFO_BASIC,
- const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const;
-
- (BMR - 2018/07/22, HDFFV-10150, HDFFV-10458, HDFFV-1047)
+ (BMR - 2019/04/22, HDFFV-10622)
Java Library:
----------------
+ - Fix a failure in JUnit-TestH5P on 32-bit architectures
+
+ (JTH - 2019/04/30)
+
- Duplicate the data read/write functions of Datasets for Attributes.
Region references could not be displayed for attributes as they could
@@ -239,7 +253,6 @@ New Features
(ADB - 2018/12/12, HDFVIEW-4)
-
- Removed H5I_REFERENCE from the Java wrappers
This ID class was never used by the library and has been removed
@@ -250,7 +263,12 @@ New Features
Tools:
------
- -
+ - h5dump was fixed for 128-bit floats, but was missing a test.
+
+ New test greps for the first 15 numbers of the 128-bit value.
+
+ (ADB - 2019/06/23, HDFFV-9407)
+
High-Level APIs:
---------------
@@ -277,6 +295,57 @@ Bug Fixes since HDF5-1.10.3 release
Library
-------
+ - Fixed an issue where copying a version 1.8 dataset between files using
+ H5Ocopy fails due to an incompatible fill version
+
+ When using the HDF5 1.10.x H5Ocopy() API call to copy a version 1.8
+ dataset to a file created with both high and low library bounds set to
+ H5F_LIBVER_V18, the H5Ocopy() call will fail with the error stack indicating
+ that the fill value version is out of bounds.
+
+ This was fixed by changing the fill value message version to H5O_FILL_VERSION_3
+ (from H5O_FILL_VERSION_2) for H5F_LIBVER_V18.
+
+ (VC - 2019/6/14, HDFFV-10800)
+
+ - Fixed a bug that would cause an error or cause fill values to be
+ incorrectly read from a chunked dataset using the "single chunk" index if
+ the data was held in cache and there was no data on disk.
+
+ (NAF - 2019/03/06)
+
+ - Fixed a bug that could cause an error or cause fill values to be
+ incorrectly read from a dataset that was written to using H5Dwrite_chunk
+ if the dataset was not closed after writing.
+
+ (NAF - 2019/03/06, HDFFV-10716)
+
+ - Fixed memory leak in scale offset filter
+
+ In a special case where the MinBits is the same as the number of bits in
+ the datatype's precision, the filter's data buffer was not freed, causing
+ the memory usage to grow. In general the buffer was freed correctly. The
+ Minbits are the minimal number of bits to store the data values. Please
+ see the reference manual for H5Pset_scaleoffset for the detail.
+
+ (RL - 2019/3/4, HDFFV-10705)
+
+ - Fix hangs with collective metadata reads during chunked dataset I/O
+
+ In the parallel library, it was discovered that when a particular
+ sequence of operations following a pattern of:
+
+ "write to chunked dataset" -> "flush file" -> "read from dataset"
+
+ occurred with collective metadata reads enabled, hangs could be
+ observed due to certain MPI ranks not participating in the collective
+ metadata reads.
+
+ To fix the issue, collective metadata reads are now disabled during
+ chunked dataset raw data I/O.
+
+ (JTH - 2019/02/11, HDFFV-10563, HDFFV-10688)
+
- Performance issue when closing an object
The slow down is due to the search of the "tag_list" to find
@@ -300,8 +369,8 @@ Bug Fixes since HDF5-1.10.3 release
When deleting the attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes,
- which may be merged/redistributed in the process, we need to
- free the dynamically allocated spaces for the intermediate
+ which may be merged/redistributed in the process, we need to
+ free the dynamically allocated spaces for the intermediate
decoded attribute.
(VC - 2018/12/26, HDFFV-10659)
@@ -333,6 +402,18 @@ Bug Fixes since HDF5-1.10.3 release
(JTH - 2018/08/25, HDFFV-10501)
+ - When iterating over an old-style group (i.e., when not using the latest
+ file format) of size 0, a NULL pointer representing the empty links
+ table would be sent to qsort(3) for sorting, which is undefined behavior.
+
+ Iterating over an empty group is explicitly tested in the links test.
+ This has not caused any failures to date and was flagged by gcc's
+ -fsanitize=undefined.
+
+ The library no longer attempts to sort an empty array.
+
+ (DER - 2019/06/18, HDFFV-10829)
+
Java Library:
----------------
- JNI native library dependencies
@@ -378,10 +459,10 @@ Bug Fixes since HDF5-1.10.3 release
Fortran
--------
- Added symbolic links libhdf5_hl_fortran.so to libhdf5hl_fortran.so and
- libhdf5_hl_fortran.a to libhdf5hl_fortran.a in hdf5/lib directory for
- autotools installs. These were added to match the name of the files
- installed by cmake and the general pattern of hl lib files. We will
- change the names of the installed lib files to the matching name in
+ libhdf5_hl_fortran.a to libhdf5hl_fortran.a in hdf5/lib directory for
+ autotools installs. These were added to match the name of the files
+ installed by cmake and the general pattern of hl lib files. We will
+ change the names of the installed lib files to the matching name in
the next major release.
(LRK - 2019/01/04, HDFFV-10596)
@@ -392,7 +473,7 @@ Bug Fixes since HDF5-1.10.3 release
(MSB, 2018/12/04, HDFFV-10511)
- - Fixed issue with Fortran not returning h5o_info_t field values
+ - Fixed issue with Fortran not returning h5o_info_t field values
meta_size%attr%index_size and meta_size%attr%heap_size.
(MSB, 2018/1/8, HDFFV-10443)
@@ -675,10 +756,10 @@ Bug Fixes since HDF5-1.10.2 release
conversions from or to long double types, especially when special values
such as infinity or NAN were involved. In some cases the results differed
by extremely small amounts from those on other machines, while some other
- tests resulted in segmentation faults. These conversion tests with long
- double types have been disabled for ppc64 machines until the problems are
+ tests resulted in segmentation faults. These conversion tests with long
+ double types have been disabled for ppc64 machines until the problems are
better understood and can be properly addressed.
-
+
(SRL - 2019/01/07, TRILAB-98)
Supported Platforms
@@ -843,6 +924,10 @@ The following platforms are not supported but have been tested for this release.
Known Problems
==============
+ CMake files do not behave correctly with paths containing spaces.
+ Do not use spaces in paths because the required escaping for handling spaces
+ results in very complex and fragile build files.
+ ADB - 2019/05/07
At present, metadata cache images may not be generated by parallel
applications. Parallel applications can read files with metadata cache
diff --git a/release_docs/USING_CMake_Examples.txt b/release_docs/USING_CMake_Examples.txt
index d5fae39..ea352fe 100644
--- a/release_docs/USING_CMake_Examples.txt
+++ b/release_docs/USING_CMake_Examples.txt
@@ -22,7 +22,7 @@ I. Preconditions
1. We suggest you obtain the latest CMake for windows from the Kitware
web site. The HDF5 1.10.x product requires a minimum CMake version
- of 3.2.2.
+ of 3.10.2.
2. You have installed the HDF5 library built with CMake, by executing
the HDF Install Utility (the *.msi file in the binary package for
@@ -38,12 +38,16 @@ II. Building HDF5 Examples with CMake
Files in the HDF5 install directory:
HDF5Examples folder
+ CTestScript.cmake
HDF5_Examples.cmake
+ HDF5_Examples_options.cmake
Default installation process:
Create a directory to run the examples, i.e. \test_hdf5.
Copy HDF5Examples folder to this directory.
+ Copy CTestScript.cmake to this directory.
Copy HDF5_Examples.cmake to this directory.
+ Copy HDF5_Examples_options.cmake to this directory.
The default source folder is defined as "HDF5Examples". It can be changed
with the CTEST_SOURCE_NAME script option.
The default installation folder is defined for the platform.
@@ -54,8 +58,9 @@ Default installation process:
with the CTEST_CONFIGURATION_TYPE script option. Note that this must
be the same as the value used with the -C command line option.
The default build configuration is defined to build and use static libraries.
- Shared libraries can be used with the STATIC_ONLY script option set to "NO".
- Other options can be changed by editing the HDF5_Examples.cmake file.
+
+ Shared libraries and other options can be changed by editing the
+ HDF5_Examples_options.cmake file.
If the defaults are okay, execute from this directory:
ctest -S HDF5_Examples.cmake -C Release -V -O test.log
@@ -69,9 +74,16 @@ Default installation process:
========================================================================
-III. Other changes to the HDF5_Examples.cmake file
+III. Defaults in the HDF5_Examples_options.cmake file
========================================================================
-Line 45-48: uncomment to use a source tarball or zipfile;
- Add script option "TAR_SOURCE=MySource.tar".
+#### DEFAULT: ###
+#### BUILD_SHARED_LIBS:BOOL=OFF ###
+#### HDF_BUILD_C:BOOL=ON ###
+#### HDF_BUILD_CXX:BOOL=OFF ###
+#### HDF_BUILD_FORTRAN:BOOL=OFF ###
+#### HDF_BUILD_JAVA:BOOL=OFF ###
+#### BUILD_TESTING:BOOL=OFF ###
+#### HDF_ENABLE_PARALLEL:BOOL=OFF ###
+#### HDF_ENABLE_THREADSAFE:BOOL=OFF ###
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 6b105a9..4cf4965 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -533,6 +533,7 @@ set (H5S_SOURCES
${HDF5_SRC_DIR}/H5S.c
${HDF5_SRC_DIR}/H5Sall.c
${HDF5_SRC_DIR}/H5Sdbg.c
+ ${HDF5_SRC_DIR}/H5Sdeprec.c
${HDF5_SRC_DIR}/H5Shyper.c
${HDF5_SRC_DIR}/H5Smpio.c
${HDF5_SRC_DIR}/H5Snone.c
@@ -639,6 +640,8 @@ set (H5VL_SOURCES
${HDF5_SRC_DIR}/H5VLpassthru.c
)
set (H5VL_HDRS
+ ${HDF5_SRC_DIR}/H5VLconnector.h
+ ${HDF5_SRC_DIR}/H5VLconnector_passthru.h
${HDF5_SRC_DIR}/H5VLnative.h
${HDF5_SRC_DIR}/H5VLpassthru.h
${HDF5_SRC_DIR}/H5VLpublic.h
@@ -944,7 +947,7 @@ if (BUILD_SHARED_LIBS)
endif ()
if (LOCAL_BATCH_TEST)
- if ("${LOCAL_BATCH_SCRIPT_COMMAND}" STREQUAL "raybsub")
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
configure_file (
${HDF5_SOURCE_DIR}/bin/batch/${LOCAL_BATCH_SCRIPT_COMMAND}
${HDF5_BINARY_DIR}/${LOCAL_BATCH_SCRIPT_COMMAND} ESCAPE_QUOTES @ONLY
@@ -966,7 +969,7 @@ endif ()
if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c)
add_executable (H5detect ${HDF5_SRC_DIR}/H5detect.c)
- target_include_directories(H5detect PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (H5detect PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
target_compile_definitions(H5detect PUBLIC ${HDF_EXTRA_C_FLAGS} ${HDF_EXTRA_FLAGS})
TARGET_C_PROPERTIES (H5detect STATIC)
target_link_libraries (H5detect
@@ -1056,7 +1059,7 @@ else ()
endif ()
add_executable (H5make_libsettings ${HDF5_SRC_DIR}/H5make_libsettings.c)
-target_include_directories(H5make_libsettings PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+target_include_directories (H5make_libsettings PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
target_compile_definitions(H5make_libsettings PUBLIC ${HDF_EXTRA_C_FLAGS} ${HDF_EXTRA_FLAGS})
TARGET_C_PROPERTIES (H5make_libsettings STATIC)
target_link_libraries (H5make_libsettings
@@ -1096,41 +1099,48 @@ option (HDF5_ENABLE_DEBUG_APIS "Turn on extra debug output in all packages" OFF)
#-----------------------------------------------------------------------------
# Add H5Tinit source to build - generated by H5detect/CMake at configure time
#-----------------------------------------------------------------------------
-set (gen_SRCS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c ${HDF5_BINARY_DIR}/H5lib_settings.c)
-add_custom_target (gen_${HDF5_LIB_TARGET} ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp2)
-
-add_library (${HDF5_LIB_TARGET} STATIC ${common_SRCS} ${gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS})
-target_include_directories(${HDF5_LIB_TARGET}
- PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
- INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
-)
-target_compile_definitions(${HDF5_LIB_TARGET}
- PUBLIC
- ${HDF_EXTRA_C_FLAGS}
- ${HDF_EXTRA_FLAGS}
- $<IF:$<CONFIG:Debug>,DEBUG,NDEBUG>
- PRIVATE
- $<$<BOOL:${HDF5_ENABLE_TRACE}>:H5_DEBUG_API> # Enable tracing of the API
- $<$<BOOL:${HDF5_ENABLE_DEBUG_APIS}>:H5Z_DEBUG;H5T_DEBUG;H5ST_DEBUG;H5S_DEBUG;H5O_DEBUG;H5I_DEBUG;H5HL_DEBUG;H5F_DEBUG;H5D_DEBUG;H5B2_DEBUG;H5AC_DEBUG>
-)
-TARGET_C_PROPERTIES (${HDF5_LIB_TARGET} STATIC)
-target_link_libraries (${HDF5_LIB_TARGET}
- PRIVATE ${LINK_LIBS} ${LINK_COMP_LIBS} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>"
- PUBLIC $<$<NOT:$<PLATFORM_ID:Windows>>:${CMAKE_DL_LIBS}>
-)
-set_global_variable (HDF5_LIBRARIES_TO_EXPORT ${HDF5_LIB_TARGET})
-H5_SET_LIB_OPTIONS (${HDF5_LIB_TARGET} ${HDF5_LIB_NAME} STATIC 0)
-set_target_properties (${HDF5_LIB_TARGET} PROPERTIES FOLDER libraries)
-add_dependencies (${HDF5_LIB_TARGET} gen_${HDF5_LIB_TARGET})
-
-set (install_targets ${HDF5_LIB_TARGET})
+if (NOT ONLY_SHARED_LIBS)
+ set (gen_SRCS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c ${HDF5_BINARY_DIR}/H5lib_settings.c)
+ add_custom_target (gen_${HDF5_LIB_TARGET} ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp2)
+
+ add_library (${HDF5_LIB_TARGET} STATIC ${common_SRCS} ${gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS})
+ target_include_directories (${HDF5_LIB_TARGET}
+ PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+ INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
+ )
+ target_compile_definitions(${HDF5_LIB_TARGET}
+ PUBLIC
+ ${HDF_EXTRA_C_FLAGS}
+ ${HDF_EXTRA_FLAGS}
+ $<IF:$<CONFIG:Debug>,DEBUG,NDEBUG>
+ PRIVATE
+ $<$<BOOL:${HDF5_ENABLE_TRACE}>:H5_DEBUG_API> # Enable tracing of the API
+ $<$<BOOL:${HDF5_ENABLE_DEBUG_APIS}>:H5Z_DEBUG;H5T_DEBUG;H5ST_DEBUG;H5S_DEBUG;H5O_DEBUG;H5I_DEBUG;H5HL_DEBUG;H5F_DEBUG;H5D_DEBUG;H5B2_DEBUG;H5AC_DEBUG>
+ )
+ TARGET_C_PROPERTIES (${HDF5_LIB_TARGET} STATIC)
+ target_link_libraries (${HDF5_LIB_TARGET}
+ PRIVATE ${LINK_LIBS} ${LINK_COMP_LIBS} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>"
+ PUBLIC $<$<NOT:$<PLATFORM_ID:Windows>>:${CMAKE_DL_LIBS}>
+ )
+ if (NOT WIN32)
+ target_link_libraries (${HDF5_LIB_TARGET}
+ PRIVATE $<$<BOOL:${HDF5_ENABLE_THREADSAFE}>:Threads::Threads>
+ )
+ endif ()
+ set_global_variable (HDF5_LIBRARIES_TO_EXPORT ${HDF5_LIB_TARGET})
+ H5_SET_LIB_OPTIONS (${HDF5_LIB_TARGET} ${HDF5_LIB_NAME} STATIC 0)
+ set_target_properties (${HDF5_LIB_TARGET} PROPERTIES FOLDER libraries)
+ add_dependencies (${HDF5_LIB_TARGET} gen_${HDF5_LIB_TARGET})
+
+ set (install_targets ${HDF5_LIB_TARGET})
+endif ()
if (BUILD_SHARED_LIBS)
set (shared_gen_SRCS ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c ${HDF5_BINARY_DIR}/shared/H5lib_settings.c)
add_custom_target (gen_${HDF5_LIBSH_TARGET} ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp2)
add_library (${HDF5_LIBSH_TARGET} SHARED ${common_SRCS} ${shared_gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS})
- target_include_directories(${HDF5_LIBSH_TARGET}
+ target_include_directories (${HDF5_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
@@ -1147,8 +1157,8 @@ if (BUILD_SHARED_LIBS)
)
TARGET_C_PROPERTIES (${HDF5_LIBSH_TARGET} SHARED)
target_link_libraries (${HDF5_LIBSH_TARGET}
- PRIVATE ${LINK_LIBS} ${LINK_COMP_LIBS} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>"
- PUBLIC $<$<NOT:$<PLATFORM_ID:Windows>>:${CMAKE_DL_LIBS}> $<$<BOOL:${HDF5_ENABLE_THREADSAFE}>:Threads::Threads>
+ PRIVATE ${LINK_LIBS} ${LINK_COMP_LIBS} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>" $<$<BOOL:${HDF5_ENABLE_THREADSAFE}>:Threads::Threads>
+ PUBLIC $<$<NOT:$<PLATFORM_ID:Windows>>:${CMAKE_DL_LIBS}>
)
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_LIBSH_TARGET}")
H5_SET_LIB_OPTIONS (${HDF5_LIBSH_TARGET} ${HDF5_LIB_NAME} SHARED "LIB")
@@ -1181,7 +1191,9 @@ if (HDF5_EXPORTED_TARGETS)
if (BUILD_SHARED_LIBS)
INSTALL_TARGET_PDB (${HDF5_LIBSH_TARGET} ${HDF5_INSTALL_BIN_DIR} libraries)
endif ()
- INSTALL_TARGET_PDB (${HDF5_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} libraries)
+ if (NOT ONLY_SHARED_LIBS)
+ INSTALL_TARGET_PDB (${HDF5_LIB_TARGET} ${HDF5_INSTALL_BIN_DIR} libraries)
+ endif ()
install (
TARGETS
@@ -1210,7 +1222,9 @@ foreach (libs ${LINK_LIBS} ${LINK_COMP_LIBS})
set (_PKG_CONFIG_LIBS_PRIVATE "${_PKG_CONFIG_LIBS_PRIVATE} -l${libs}")
endforeach ()
-set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_LIB_CORENAME}")
+if (NOT ONLY_SHARED_LIBS)
+ set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_LIB_CORENAME}")
+endif ()
if (BUILD_SHARED_LIBS)
set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_LIB_CORENAME}")
endif ()
diff --git a/src/H5.c b/src/H5.c
index bf4643c..104c9fd 100644
--- a/src/H5.c
+++ b/src/H5.c
@@ -214,7 +214,7 @@ H5_init_library(void)
*/
if(H5E_init() < 0)
HGOTO_ERROR(H5E_FUNC, H5E_CANTINIT, FAIL, "unable to initialize error interface")
- if(H5VL_init() < 0)
+ if(H5VL_init_phase1() < 0)
HGOTO_ERROR(H5E_FUNC, H5E_CANTINIT, FAIL, "unable to initialize vol interface")
if(H5P_init() < 0)
HGOTO_ERROR(H5E_FUNC, H5E_CANTINIT, FAIL, "unable to initialize property list interface")
@@ -229,6 +229,10 @@ H5_init_library(void)
if(H5FS_init() < 0)
HGOTO_ERROR(H5E_FUNC, H5E_CANTINIT, FAIL, "unable to initialize FS interface")
+ /* Finish initializing interfaces that depend on the interfaces above */
+ if(H5VL_init_phase2() < 0)
+ HGOTO_ERROR(H5E_FUNC, H5E_CANTINIT, FAIL, "unable to initialize vol interface")
+
/* Debugging? */
H5_debug_mask("-all");
H5_debug_mask(HDgetenv("HDF5_DEBUG"));
diff --git a/src/H5A.c b/src/H5A.c
index 9c3ad7e..abf8694 100644
--- a/src/H5A.c
+++ b/src/H5A.c
@@ -254,7 +254,6 @@ H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id,
{
void *attr = NULL; /* Attribute created */
H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */
- H5P_genplist_t *plist; /* Property list pointer */
H5VL_loc_params_t loc_params;
hid_t ret_value = H5I_INVALID_HID; /* Return value */
@@ -277,16 +276,6 @@ H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id,
if(H5CX_set_apl(&aapl_id, H5P_CLS_AACC, loc_id, TRUE) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info")
- /* Get the property list structure for the acpl */
- if(NULL == (plist = (H5P_genplist_t *)H5I_object(acpl_id)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
-
- /* Set creation properties */
- if(H5P_set(plist, H5VL_PROP_ATTR_TYPE_ID, &type_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for datatype id")
- if(H5P_set(plist, H5VL_PROP_ATTR_SPACE_ID, &space_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for space id")
-
/* Get the location object */
if(NULL == (vol_obj = H5VL_vol_object(loc_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier")
@@ -296,7 +285,7 @@ H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id,
loc_params.obj_type = H5I_get_type(loc_id);
/* Create the attribute */
- if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, attr_name, acpl_id, aapl_id, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
+ if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, attr_name, type_id, space_id, acpl_id, aapl_id, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to create attribute")
/* Register the new attribute and get an ID for it */
@@ -350,7 +339,6 @@ H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name,
{
void *attr = NULL; /* attr token from VOL connector */
H5VL_object_t *vol_obj = NULL; /* object token of loc_id */
- H5P_genplist_t *plist; /* Property list pointer */
H5VL_loc_params_t loc_params;
hid_t ret_value = H5I_INVALID_HID; /* Return value */
@@ -380,16 +368,6 @@ H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name,
H5CX_set_lapl(lapl_id);
}
- /* Get the plist structure */
- if(NULL == (plist = (H5P_genplist_t *)H5I_object(acpl_id)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5I_INVALID_HID, "can't find object for ID")
-
- /* Set creation properties */
- if(H5P_set(plist, H5VL_PROP_ATTR_TYPE_ID, &type_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for datatype id")
- if(H5P_set(plist, H5VL_PROP_ATTR_SPACE_ID, &space_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for space id")
-
/* Set up location struct */
loc_params.type = H5VL_OBJECT_BY_NAME;
loc_params.obj_type = H5I_get_type(loc_id);
@@ -401,7 +379,7 @@ H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name,
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier")
/* Create the attribute */
- if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, attr_name, acpl_id, aapl_id, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
+ if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, attr_name, type_id, space_id, acpl_id, aapl_id, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to create attribute")
/* Register the new attribute and get an ID for it */
diff --git a/src/H5AC.c b/src/H5AC.c
index 440dfd8..dc88fd4 100644
--- a/src/H5AC.c
+++ b/src/H5AC.c
@@ -349,7 +349,7 @@ H5AC_create(const H5F_t *f, H5AC_cache_config_t *config_ptr, H5AC_cache_image_co
aux_ptr->sync_point_done = NULL;
aux_ptr->p0_image_len = 0;
- sprintf(prefix, "%d:", mpi_rank);
+ HDsprintf(prefix, "%d:", mpi_rank);
if(mpi_rank == 0) {
if(NULL == (aux_ptr->d_slist_ptr = H5SL_create(H5SL_TYPE_HADDR, NULL)))
diff --git a/src/H5Abtree2.c b/src/H5Abtree2.c
index 07da8e2..3377aa2 100644
--- a/src/H5Abtree2.c
+++ b/src/H5Abtree2.c
@@ -35,6 +35,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5Apkg.h" /* Attributes */
#include "H5Eprivate.h" /* Error handling */
+#include "H5MMprivate.h" /* Memory management */
#include "H5SMprivate.h" /* Shared object header messages */
@@ -318,7 +319,7 @@ H5A__dense_btree2_name_encode(uint8_t *raw, const void *_nrecord, void H5_ATTR_U
FUNC_ENTER_STATIC_NOERR
/* Encode the record's fields */
- HDmemcpy(raw, nrecord->id.id, (size_t)H5O_FHEAP_ID_LEN);
+ H5MM_memcpy(raw, nrecord->id.id, (size_t)H5O_FHEAP_ID_LEN);
raw += H5O_FHEAP_ID_LEN;
*raw++ = nrecord->flags;
UINT32ENCODE(raw, nrecord->corder)
@@ -349,7 +350,7 @@ H5A__dense_btree2_name_decode(const uint8_t *raw, void *_nrecord, void H5_ATTR_U
FUNC_ENTER_STATIC_NOERR
/* Decode the record's fields */
- HDmemcpy(nrecord->id.id, raw, (size_t)H5O_FHEAP_ID_LEN);
+ H5MM_memcpy(nrecord->id.id, raw, (size_t)H5O_FHEAP_ID_LEN);
raw += H5O_FHEAP_ID_LEN;
nrecord->flags = *raw++;
UINT32DECODE(raw, nrecord->corder)
@@ -477,7 +478,7 @@ H5A__dense_btree2_corder_encode(uint8_t *raw, const void *_nrecord, void H5_ATTR
FUNC_ENTER_STATIC_NOERR
/* Encode the record's fields */
- HDmemcpy(raw, nrecord->id.id, (size_t)H5O_FHEAP_ID_LEN);
+ H5MM_memcpy(raw, nrecord->id.id, (size_t)H5O_FHEAP_ID_LEN);
raw += H5O_FHEAP_ID_LEN;
*raw++ = nrecord->flags;
UINT32ENCODE(raw, nrecord->corder)
@@ -507,7 +508,7 @@ H5A__dense_btree2_corder_decode(const uint8_t *raw, void *_nrecord, void H5_ATTR
FUNC_ENTER_STATIC_NOERR
/* Decode the record's fields */
- HDmemcpy(nrecord->id.id, raw, (size_t)H5O_FHEAP_ID_LEN);
+ H5MM_memcpy(nrecord->id.id, raw, (size_t)H5O_FHEAP_ID_LEN);
raw += H5O_FHEAP_ID_LEN;
nrecord->flags = *raw++;
UINT32DECODE(raw, nrecord->corder)
diff --git a/src/H5Adense.c b/src/H5Adense.c
index 021fa76..bddfe31 100644
--- a/src/H5Adense.c
+++ b/src/H5Adense.c
@@ -325,14 +325,11 @@ H5A__dense_fnd_cb(const H5A_t *attr, hbool_t *took_ownership, void *_user_attr)
*/
if(*user_attr != NULL) {
H5A_t *old_attr = *user_attr;
- if(old_attr->shared) {
- /* Free any dynamically allocated items */
- if(H5A__free(old_attr) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info")
- /* Destroy shared attribute struct */
- old_attr->shared = H5FL_FREE(H5A_shared_t, old_attr->shared);
- } /* end if */
+ /* Free any dynamically allocated items */
+ if(old_attr->shared)
+ if(H5A__shared_free(old_attr) < 0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info")
old_attr = H5FL_FREE(H5A_t, old_attr);
} /* end if */
@@ -899,6 +896,7 @@ H5A__dense_rename(H5F_t *f, const H5O_ainfo_t *ainfo, const char *old_name,
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5HF_t *shared_fheap = NULL; /* Fractal heap handle for shared header messages */
H5B2_t *bt2_name = NULL; /* v2 B-tree handle for name index */
+ H5B2_t *bt2_corder = NULL; /* v2 B-tree handle for creation order ndex */
H5A_t *attr_copy = NULL; /* Copy of attribute to rename */
htri_t attr_sharable; /* Flag indicating attributes are sharable */
htri_t shared_mesg; /* Should this message be stored in the Shared Message table? */
@@ -976,6 +974,33 @@ H5A__dense_rename(H5F_t *f, const H5O_ainfo_t *ainfo, const char *old_name,
if(H5A__set_version(f, attr_copy) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, FAIL, "unable to update attribute version")
+ /* Need to remove the attribute from the creation order index v2 B-tree */
+ if(ainfo->index_corder) {
+ htri_t corder_attr_exists; /* Attribute exists in v2 B-tree */
+
+ /* Open the creation order index v2 B-tree */
+ HDassert(H5F_addr_defined(ainfo->corder_bt2_addr));
+ if(NULL == (bt2_corder = H5B2_open(f, ainfo->corder_bt2_addr, NULL)))
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTOPENOBJ, FAIL, "unable to open v2 B-tree for creation index")
+
+ /* Set up the creation order to search for */
+ udata.corder = attr_copy->shared->crt_idx;
+
+ if((corder_attr_exists = H5B2_find(bt2_corder, &udata, NULL, NULL)) < 0)
+ HGOTO_ERROR(H5E_ATTR, H5E_NOTFOUND, FAIL, "can't search for attribute in name index")
+
+ if(corder_attr_exists) {
+ H5A_bt2_ud_rm_t rm_udata;
+
+ /* Set up the creation order in user data for the v2 B-tree 'record remove' callback */
+ rm_udata.common.corder = attr_copy->shared->crt_idx;
+
+ /* Remove the record from the creation order index v2 B-tree */
+ if(H5B2_remove(bt2_corder, &rm_udata, NULL, NULL) < 0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTREMOVE, FAIL, "unable to remove attribute from creation order index v2 B-tree")
+ }
+ }
+
/* Insert renamed attribute back into dense storage */
/* (Possibly making it shared) */
if(H5A__dense_insert(f, ainfo, attr_copy) < 0)
@@ -1023,6 +1048,8 @@ done:
HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(bt2_name && H5B2_close(bt2_name) < 0)
HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, FAIL, "can't close v2 B-tree for name index")
+ if(bt2_corder && H5B2_close(bt2_corder) < 0)
+ HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, FAIL, "can't close v2 B-tree for creation order index")
if(attr_copy)
H5O_msg_free(H5O_ATTR_ID, attr_copy);
diff --git a/src/H5Adeprec.c b/src/H5Adeprec.c
index b438cd2..8d0e33c 100644
--- a/src/H5Adeprec.c
+++ b/src/H5Adeprec.c
@@ -119,7 +119,6 @@ H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id,
void *attr = NULL; /* attr token from VOL connector */
H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */
H5VL_loc_params_t loc_params;
- H5P_genplist_t *plist; /* Property list pointer */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
@@ -139,16 +138,6 @@ H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id,
if(H5P_DEFAULT == acpl_id)
acpl_id = H5P_ATTRIBUTE_CREATE_DEFAULT;
- /* Get the plist structure */
- if(NULL == (plist = (H5P_genplist_t *)H5I_object(acpl_id)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5I_INVALID_HID, "can't find object for ID")
-
- /* Set creation properties */
- if(H5P_set(plist, H5VL_PROP_ATTR_TYPE_ID, &type_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for datatype id")
- if(H5P_set(plist, H5VL_PROP_ATTR_SPACE_ID, &space_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't set property value for space id")
-
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_SELF;
loc_params.obj_type = H5I_get_type(loc_id);
@@ -158,7 +147,7 @@ H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id,
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier")
/* Create the attribute */
- if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, name, acpl_id, H5P_DEFAULT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
+ if(NULL == (attr = H5VL_attr_create(vol_obj, &loc_params, name, type_id, space_id, acpl_id, H5P_DEFAULT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to create attribute")
/* Register the new attribute and get an ID for it */
diff --git a/src/H5Aint.c b/src/H5Aint.c
index 6502fa4..808d9b3 100644
--- a/src/H5Aint.c
+++ b/src/H5Aint.c
@@ -108,6 +108,7 @@ static herr_t H5A__iterate_common(hid_t loc_id, H5_index_t idx_type,
const unsigned H5O_attr_ver_bounds[] = {
H5O_ATTR_VERSION_1, /* H5F_LIBVER_EARLIEST */
H5O_ATTR_VERSION_3, /* H5F_LIBVER_V18 */
+ H5O_ATTR_VERSION_3, /* H5F_LIBVER_V110 */
H5O_ATTR_VERSION_LATEST /* H5F_LIBVER_LATEST */
};
@@ -646,21 +647,21 @@ H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf)
HGOTO_ERROR(H5E_ATTR, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Copy the attribute data into the buffer for conversion */
- HDmemcpy(tconv_buf, attr->shared->data, (src_type_size * nelmts));
+ H5MM_memcpy(tconv_buf, attr->shared->data, (src_type_size * nelmts));
/* Perform datatype conversion. */
if(H5T_convert(tpath, src_id, dst_id, nelmts, (size_t)0, (size_t)0, tconv_buf, bkg_buf) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL, "datatype conversion failed")
/* Copy the converted data into the user's buffer */
- HDmemcpy(buf, tconv_buf, (dst_type_size * nelmts));
+ H5MM_memcpy(buf, tconv_buf, (dst_type_size * nelmts));
} /* end if */
/* No type conversion necessary */
else {
HDassert(dst_type_size == src_type_size);
/* Copy the attribute data into the user's buffer */
- HDmemcpy(buf, attr->shared->data, (dst_type_size * nelmts));
+ H5MM_memcpy(buf, attr->shared->data, (dst_type_size * nelmts));
} /* end else */
} /* end else */
} /* end if */
@@ -747,7 +748,7 @@ H5A__write(H5A_t *attr, const H5T_t *mem_type, const void *buf)
HGOTO_ERROR(H5E_ATTR, H5E_CANTALLOC, FAIL, "memory allocation failed")
/* Copy the user's data into the buffer for conversion */
- HDmemcpy(tconv_buf, buf, (src_type_size * nelmts));
+ H5MM_memcpy(tconv_buf, buf, (src_type_size * nelmts));
/* Perform datatype conversion */
if(H5T_convert(tpath, src_id, dst_id, nelmts, (size_t)0, (size_t)0, tconv_buf, bkg_buf) < 0)
@@ -770,8 +771,8 @@ H5A__write(H5A_t *attr, const H5T_t *mem_type, const void *buf)
if(NULL == (attr->shared->data = H5FL_BLK_MALLOC(attr_buf, dst_type_size * nelmts)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
- /* Copy the attribute data into the user's buffer */
- HDmemcpy(attr->shared->data, buf, (dst_type_size * nelmts));
+ /* Copy the attribute data into the attribute data buffer */
+ H5MM_memcpy(attr->shared->data, buf, (dst_type_size * nelmts));
} /* end else */
/* Modify the attribute in the object header */
@@ -827,7 +828,7 @@ H5A__get_name(H5A_t *attr, size_t buf_size, char *buf)
/* Copy all/some of the name */
if(buf && copy_len > 0) {
- HDmemcpy(buf, attr->shared->name, copy_len);
+ H5MM_memcpy(buf, attr->shared->name, copy_len);
/* Terminate the string */
buf[copy_len]='\0';
@@ -1091,48 +1092,55 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5A__free
+ * Function: H5A__shared_free
*
- * Purpose: Frees all memory associated with an attribute, but does not
- * free the H5A_t structure (which should be done in H5T_close).
+ * Purpose: Cleans up the shared attribute data. This will free
+ * the attribute's shared structure as well.
+ *
+ * attr and attr->shared must not be NULL
*
* Return: SUCCEED/FAIL
*
- * Programmer: Quincey Koziol
- * Monday, November 15, 2004
+ * Programmer: Quincey Koziol
+ * Monday, November 15, 2004
*
*-------------------------------------------------------------------------
*/
herr_t
-H5A__free(H5A_t *attr)
+H5A__shared_free(H5A_t *attr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
HDassert(attr);
+ HDassert(attr->shared);
- /* Free dynamically allocated items */
+ /* Free dynamically allocated items.
+ * When possible, keep trying to shut things down (via HDONE_ERROR).
+ */
if(attr->shared->name) {
H5MM_xfree(attr->shared->name);
attr->shared->name = NULL;
}
if(attr->shared->dt) {
if(H5T_close_real(attr->shared->dt) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release datatype info")
+ HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release datatype info")
attr->shared->dt = NULL;
}
if(attr->shared->ds) {
if(H5S_close(attr->shared->ds) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release dataspace info")
+ HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release dataspace info")
attr->shared->ds = NULL;
}
if(attr->shared->data)
attr->shared->data = H5FL_BLK_FREE(attr_buf, attr->shared->data);
-done:
+ /* Destroy shared attribute struct */
+ attr->shared = H5FL_FREE(H5A_shared_t, attr->shared);
+
FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5A__free() */
+} /* end H5A__shared_free() */
/*-------------------------------------------------------------------------
@@ -1196,11 +1204,9 @@ H5A__close(H5A_t *attr)
/* Reference count can be 0. It only happens when H5A__create fails. */
if(attr->shared->nrefs <= 1) {
/* Free dynamically allocated items */
- if(H5A__free(attr) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info")
-
- /* Destroy shared attribute struct */
- attr->shared = H5FL_FREE(H5A_shared_t, attr->shared);
+ if(attr->shared)
+ if(H5A__shared_free(attr) < 0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info")
} /* end if */
else {
/* There are other references to the shared part of the attribute.
@@ -2240,7 +2246,7 @@ H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_s
if(NULL == (buf = H5FL_BLK_MALLOC(attr_buf, buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation NULLed for raw data chunk")
- HDmemcpy(buf, attr_src->shared->data, attr_src->shared->data_size);
+ H5MM_memcpy(buf, attr_src->shared->data, attr_src->shared->data_size);
/* Allocate background memory */
if(H5T_path_bkg(tpath_src_mem) || H5T_path_bkg(tpath_mem_dst))
@@ -2251,7 +2257,7 @@ H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_s
if(H5T_convert(tpath_src_mem, tid_src, tid_mem, nelmts, (size_t)0, (size_t)0, buf, bkg_buf) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "datatype conversion NULLed")
- HDmemcpy(reclaim_buf, buf, buf_size);
+ H5MM_memcpy(reclaim_buf, buf, buf_size);
/* Set background buffer to all zeros */
if(bkg_buf)
@@ -2261,14 +2267,14 @@ H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_s
if(H5T_convert(tpath_mem_dst, tid_mem, tid_dst, nelmts, (size_t)0, (size_t)0, buf, bkg_buf) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "datatype conversion NULLed")
- HDmemcpy(attr_dst->shared->data, buf, attr_dst->shared->data_size);
+ H5MM_memcpy(attr_dst->shared->data, buf, attr_dst->shared->data_size);
if(H5D_vlen_reclaim(tid_mem, buf_space, reclaim_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADITER, NULL, "unable to reclaim variable-length data")
} /* end if */
else {
HDassert(attr_dst->shared->data_size == attr_src->shared->data_size);
- HDmemcpy(attr_dst->shared->data, attr_src->shared->data, attr_src->shared->data_size);
+ H5MM_memcpy(attr_dst->shared->data, attr_src->shared->data, attr_src->shared->data_size);
} /* end else */
} /* end if(attr_src->shared->data) */
@@ -2395,9 +2401,13 @@ H5A__attr_post_copy_file(const H5O_loc_t *src_oloc, const H5A_t *attr_src,
/* Check for expanding references */
if(cpy_info->expand_ref) {
size_t ref_count;
+ size_t dst_dt_size; /* Destination datatype size */
+ /* Determine size of the destination datatype */
+ if(0 == (dst_dt_size = H5T_get_size(attr_dst->shared->dt)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to determine datatype size")
/* Determine # of reference elements to copy */
- ref_count = attr_dst->shared->data_size / H5T_get_size(attr_dst->shared->dt);
+ ref_count = attr_dst->shared->data_size / dst_dt_size;
/* Copy objects referenced in source buffer to destination file and set destination elements */
if(H5O_copy_expand_ref(file_src, attr_dst->shared->data, file_dst, attr_dst->shared->data, ref_count, H5T_get_ref_type(attr_dst->shared->dt), cpy_info) < 0)
diff --git a/src/H5Apkg.h b/src/H5Apkg.h
index 91061cd..f3870c0 100644
--- a/src/H5Apkg.h
+++ b/src/H5Apkg.h
@@ -196,7 +196,7 @@ H5_DLL H5A_t *H5A__copy(H5A_t *new_attr, const H5A_t *old_attr);
H5_DLL hid_t H5A__get_type(H5A_t *attr);
H5_DLL herr_t H5A__get_info(const H5A_t *attr, H5A_info_t *ainfo);
H5_DLL hid_t H5A__get_create_plist(H5A_t* attr);
-H5_DLL herr_t H5A__free(H5A_t *attr);
+H5_DLL herr_t H5A__shared_free(H5A_t *attr);
H5_DLL herr_t H5A__close(H5A_t *attr);
H5_DLL herr_t H5A__close_cb(H5VL_object_t *attr_vol_obj);
H5_DLL htri_t H5A__get_ainfo(H5F_t *f, H5O_t *oh, H5O_ainfo_t *ainfo);
diff --git a/src/H5B.c b/src/H5B.c
index 71b9020..2a34fae 100644
--- a/src/H5B.c
+++ b/src/H5B.c
@@ -107,6 +107,7 @@
#include "H5Eprivate.h" /* Error handling */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File memory management */
+#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
@@ -436,8 +437,8 @@ H5B__split(H5F_t *f, H5B_ins_ud_t *bt_ud, unsigned idx,
side = "LEFT";
else
side = "MIDDLE";
- fprintf(H5DEBUG(B), "H5B__split: %3u {%5.3f,%5.3f,%5.3f} %6s",
- shared->two_k, split_ratios[0], split_ratios[1], split_ratios[2], side);
+ HDfprintf(H5DEBUG(B), "H5B__split: %3u {%5.3f,%5.3f,%5.3f} %6s",
+ shared->two_k, split_ratios[0], split_ratios[1], split_ratios[2], side);
}
#endif
@@ -464,7 +465,7 @@ H5B__split(H5F_t *f, H5B_ins_ud_t *bt_ud, unsigned idx,
nright = shared->two_k - nleft;
#ifdef H5B_DEBUG
if(H5DEBUG(B))
- fprintf(H5DEBUG(B), " split %3d/%-3d\n", nleft, nright);
+ HDfprintf(H5DEBUG(B), " split %3d/%-3d\n", nleft, nright);
#endif
/*
@@ -484,10 +485,10 @@ H5B__split(H5F_t *f, H5B_ins_ud_t *bt_ud, unsigned idx,
*/
split_bt_ud->cache_flags = H5AC__DIRTIED_FLAG;
- HDmemcpy(split_bt_ud->bt->native,
+ H5MM_memcpy(split_bt_ud->bt->native,
bt_ud->bt->native + nleft * shared->type->sizeof_nkey,
(nright + 1) * shared->type->sizeof_nkey);
- HDmemcpy(split_bt_ud->bt->child,
+ H5MM_memcpy(split_bt_ud->bt->child,
&bt_ud->bt->child[nleft],
nright * sizeof(haddr_t));
@@ -612,9 +613,9 @@ H5B_insert(H5F_t *f, const H5B_class_t *type, haddr_t addr, void *udata)
/* update left and right keys */
if(!lt_key_changed)
- HDmemcpy(lt_key, H5B_NKEY(bt_ud.bt,shared,0), type->sizeof_nkey);
+ H5MM_memcpy(lt_key, H5B_NKEY(bt_ud.bt,shared,0), type->sizeof_nkey);
if(!rt_key_changed)
- HDmemcpy(rt_key, H5B_NKEY(split_bt_ud.bt,shared,split_bt_ud.bt->nchildren), type->sizeof_nkey);
+ H5MM_memcpy(rt_key, H5B_NKEY(split_bt_ud.bt,shared,split_bt_ud.bt->nchildren), type->sizeof_nkey);
/*
* Copy the old root node to some other file location and make the new root
@@ -657,11 +658,11 @@ H5B_insert(H5F_t *f, const H5B_class_t *type, haddr_t addr, void *udata)
new_root_bt->nchildren = 2;
new_root_bt->child[0] = bt_ud.addr;
- HDmemcpy(H5B_NKEY(new_root_bt, shared, 0), lt_key, shared->type->sizeof_nkey);
+ H5MM_memcpy(H5B_NKEY(new_root_bt, shared, 0), lt_key, shared->type->sizeof_nkey);
new_root_bt->child[1] = split_bt_ud.addr;
- HDmemcpy(H5B_NKEY(new_root_bt, shared, 1), md_key, shared->type->sizeof_nkey);
- HDmemcpy(H5B_NKEY(new_root_bt, shared, 2), rt_key, shared->type->sizeof_nkey);
+ H5MM_memcpy(H5B_NKEY(new_root_bt, shared, 1), md_key, shared->type->sizeof_nkey);
+ H5MM_memcpy(H5B_NKEY(new_root_bt, shared, 2), rt_key, shared->type->sizeof_nkey);
/* Insert the modified copy of the old root into the file again */
if(H5AC_insert_entry(f, H5AC_BT, addr, new_root_bt, H5AC__NO_FLAGS_SET) < 0)
@@ -726,9 +727,9 @@ H5B__insert_child(H5B_t *bt, unsigned *bt_flags, unsigned idx,
base = H5B_NKEY(bt, shared, (idx + 1));
if((idx + 1) == bt->nchildren) {
/* Make room for the new key */
- HDmemcpy(base + shared->type->sizeof_nkey, base,
+ H5MM_memcpy(base + shared->type->sizeof_nkey, base,
shared->type->sizeof_nkey); /* No overlap possible - memcpy() OK */
- HDmemcpy(base, md_key, shared->type->sizeof_nkey);
+ H5MM_memcpy(base, md_key, shared->type->sizeof_nkey);
/* The MD_KEY is the left key of the new node */
if(H5B_INS_RIGHT == anchor)
@@ -741,7 +742,7 @@ H5B__insert_child(H5B_t *bt, unsigned *bt_flags, unsigned idx,
/* Make room for the new key */
HDmemmove(base + shared->type->sizeof_nkey, base,
(bt->nchildren - idx) * shared->type->sizeof_nkey);
- HDmemcpy(base, md_key, shared->type->sizeof_nkey);
+ H5MM_memcpy(base, md_key, shared->type->sizeof_nkey);
/* The MD_KEY is the left key of the new node */
if(H5B_INS_RIGHT == anchor)
@@ -915,7 +916,7 @@ H5B__insert_helper(H5F_t *f, H5B_ins_ud_t *bt_ud, const H5B_class_t *type,
* node. This node is not empty (handled above).
*/
my_ins = H5B_INS_LEFT;
- HDmemcpy(md_key, H5B_NKEY(bt,shared,idx), type->sizeof_nkey);
+ H5MM_memcpy(md_key, H5B_NKEY(bt,shared,idx), type->sizeof_nkey);
if((type->new_node)(f, H5B_INS_LEFT, H5B_NKEY(bt, shared, idx), udata,
md_key, &new_child_bt_ud.addr/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert minimum leaf node")
@@ -963,7 +964,7 @@ H5B__insert_helper(H5F_t *f, H5B_ins_ud_t *bt_ud, const H5B_class_t *type,
*/
idx = bt->nchildren - 1;
my_ins = H5B_INS_RIGHT;
- HDmemcpy(md_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
+ H5MM_memcpy(md_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
if((type->new_node)(f, H5B_INS_RIGHT, md_key, udata,
H5B_NKEY(bt, shared, idx + 1), &new_child_bt_ud.addr/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert maximum leaf node")
@@ -1021,7 +1022,7 @@ H5B__insert_helper(H5F_t *f, H5B_ins_ud_t *bt_ud, const H5B_class_t *type,
*lt_key_changed = FALSE;
} /* end if */
else
- HDmemcpy(lt_key, H5B_NKEY(bt, shared, idx), type->sizeof_nkey);
+ H5MM_memcpy(lt_key, H5B_NKEY(bt, shared, idx), type->sizeof_nkey);
} /* end if */
if(*rt_key_changed) {
bt_ud->cache_flags |= H5AC__DIRTIED_FLAG;
@@ -1031,7 +1032,7 @@ H5B__insert_helper(H5F_t *f, H5B_ins_ud_t *bt_ud, const H5B_class_t *type,
*rt_key_changed = FALSE;
} /* end if */
else
- HDmemcpy(rt_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
+ H5MM_memcpy(rt_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
} /* end if */
/*
@@ -1080,7 +1081,7 @@ H5B__insert_helper(H5F_t *f, H5B_ins_ud_t *bt_ud, const H5B_class_t *type,
* by the left and right node).
*/
if(split_bt_ud->bt) {
- HDmemcpy(md_key, H5B_NKEY(split_bt_ud->bt, shared, 0), type->sizeof_nkey);
+ H5MM_memcpy(md_key, H5B_NKEY(split_bt_ud->bt, shared, 0), type->sizeof_nkey);
ret_value = H5B_INS_RIGHT;
#ifdef H5B_DEBUG
/*
@@ -1339,7 +1340,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
/* Don't propagate change out of this B-tree node */
*lt_key_changed = FALSE;
else
- HDmemcpy(lt_key, H5B_NKEY(bt, shared, idx), type->sizeof_nkey);
+ H5MM_memcpy(lt_key, H5B_NKEY(bt, shared, idx), type->sizeof_nkey);
} /* end if */
if(*rt_key_changed) {
HDassert(type->critical_key == H5B_RIGHT);
@@ -1348,7 +1349,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
/* Don't propagate change out of this B-tree node */
*rt_key_changed = FALSE;
else
- HDmemcpy(rt_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
+ H5MM_memcpy(rt_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey);
} /* end if */
/*
@@ -1383,7 +1384,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
* in its left neighbor, but only if it is not the critical
* key for the right-most child of the left neighbor */
if(type->critical_key == H5B_LEFT)
- HDmemcpy(H5B_NKEY(sibling, shared, sibling->nchildren),
+ H5MM_memcpy(H5B_NKEY(sibling, shared, sibling->nchildren),
H5B_NKEY(bt, shared, 1), type->sizeof_nkey);
sibling->right = bt->right;
@@ -1400,7 +1401,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
* its right neighbor, but only if it is not the critical
* key for the left-most child of the right neighbor */
if(type->critical_key == H5B_RIGHT)
- HDmemcpy(H5B_NKEY(sibling, shared, 0),
+ H5MM_memcpy(H5B_NKEY(sibling, shared, 0),
H5B_NKEY(bt, shared, 0), type->sizeof_nkey);
sibling->left = bt->left;
@@ -1442,7 +1443,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
/* Slide all keys down 1, update lt_key */
HDmemmove(H5B_NKEY(bt, shared, 0), H5B_NKEY(bt, shared, 1),
bt->nchildren * type->sizeof_nkey);
- HDmemcpy(lt_key, H5B_NKEY(bt, shared, 0), type->sizeof_nkey);
+ H5MM_memcpy(lt_key, H5B_NKEY(bt, shared, 0), type->sizeof_nkey);
*lt_key_changed = TRUE;
} else
/* Slide all but the leftmost 2 keys down, leaving the leftmost
@@ -1471,7 +1472,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
H5B_NKEY(bt, shared, bt->nchildren), type->sizeof_nkey);
else {
/* Just update rt_key */
- HDmemcpy(rt_key, H5B_NKEY(bt, shared, bt->nchildren - 1),
+ H5MM_memcpy(rt_key, H5B_NKEY(bt, shared, bt->nchildren - 1),
type->sizeof_nkey);
*rt_key_changed = TRUE;
} /* end else */
@@ -1516,7 +1517,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
if(NULL == (sibling = (H5B_t *)H5AC_protect(f, H5AC_BT, bt->left, &cache_udata, H5AC__NO_FLAGS_SET)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, H5B_INS_ERROR, "unable to protect node")
- HDmemcpy(H5B_NKEY(sibling, shared, sibling->nchildren),
+ H5MM_memcpy(H5B_NKEY(sibling, shared, sibling->nchildren),
H5B_NKEY(bt, shared, 0), type->sizeof_nkey);
if(H5AC_unprotect(f, H5AC_BT, bt->left, sibling, H5AC__DIRTIED_FLAG) < 0)
@@ -1531,7 +1532,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level,
if(NULL == (sibling = (H5B_t *)H5AC_protect(f, H5AC_BT, bt->right, &cache_udata, H5AC__NO_FLAGS_SET)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, H5B_INS_ERROR, "unable to protect node")
- HDmemcpy(H5B_NKEY(sibling, shared, 0),
+ H5MM_memcpy(H5B_NKEY(sibling, shared, 0),
H5B_NKEY(bt, shared, bt->nchildren), type->sizeof_nkey);
if(H5AC_unprotect(f, H5AC_BT, bt->right, sibling, H5AC__DIRTIED_FLAG) < 0)
@@ -1811,7 +1812,7 @@ H5B__copy(const H5B_t *old_bt)
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "memory allocation failed for B-tree root node")
/* Copy the main structure */
- HDmemcpy(new_node, old_bt, sizeof(H5B_t));
+ H5MM_memcpy(new_node, old_bt, sizeof(H5B_t));
/* Reset cache info */
HDmemset(&new_node->cache_info, 0, sizeof(H5AC_info_t));
@@ -1821,8 +1822,8 @@ H5B__copy(const H5B_t *old_bt)
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "memory allocation failed for B-tree root node")
/* Copy the other structures */
- HDmemcpy(new_node->native, old_bt->native, shared->sizeof_keys);
- HDmemcpy(new_node->child, old_bt->child, (sizeof(haddr_t) * shared->two_k));
+ H5MM_memcpy(new_node->native, old_bt->native, shared->sizeof_keys);
+ H5MM_memcpy(new_node->child, old_bt->child, (sizeof(haddr_t) * shared->two_k));
/* Increment the ref-count on the raw page */
H5UC_INC(new_node->rc_shared);
diff --git a/src/H5B2.c b/src/H5B2.c
index cf8e4a9..6b0d7a3 100644
--- a/src/H5B2.c
+++ b/src/H5B2.c
@@ -662,7 +662,7 @@ H5B2_find(H5B2_t *bt2, void *udata, H5B2_found_t op, void *op_data)
if(hdr->min_native_rec == NULL)
if(NULL == (hdr->min_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info")
- HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
if(idx == (unsigned)(leaf->nrec - 1)) {
@@ -670,7 +670,7 @@ H5B2_find(H5B2_t *bt2, void *udata, H5B2_found_t op, void *op_data)
if(hdr->max_native_rec == NULL)
if(NULL == (hdr->max_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info")
- HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
} /* end if */
@@ -1343,7 +1343,7 @@ H5B2_modify(H5B2_t *bt2, void *udata, H5B2_modify_t op, void *op_data)
if(hdr->min_native_rec == NULL)
if(NULL == (hdr->min_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info")
- HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
if(idx == (unsigned)(leaf->nrec - 1)) {
@@ -1351,7 +1351,7 @@ H5B2_modify(H5B2_t *bt2, void *udata, H5B2_modify_t op, void *op_data)
if(hdr->max_native_rec == NULL)
if(NULL == (hdr->max_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info")
- HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
} /* end if */
diff --git a/src/H5B2cache.c b/src/H5B2cache.c
index 2e1d37b..2a77bd5 100644
--- a/src/H5B2cache.c
+++ b/src/H5B2cache.c
@@ -391,7 +391,7 @@ H5B2__cache_hdr_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED le
HDassert(hdr);
/* Magic number */
- HDmemcpy(image, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC);
+ H5MM_memcpy(image, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += H5_SIZEOF_MAGIC;
/* Version # */
@@ -811,7 +811,7 @@ H5B2__cache_int_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED le
HDassert(internal->hdr);
/* Magic number */
- HDmemcpy(image, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC);
+ H5MM_memcpy(image, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += H5_SIZEOF_MAGIC;
/* Version # */
@@ -1212,7 +1212,7 @@ H5B2__cache_leaf_serialize(const H5F_t H5_ATTR_UNUSED *f, void *_image, size_t H
HDassert(leaf->hdr);
/* magic number */
- HDmemcpy(image, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC);
+ H5MM_memcpy(image, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += H5_SIZEOF_MAGIC;
/* version # */
diff --git a/src/H5B2int.c b/src/H5B2int.c
index b3f855f..9940cd7 100644
--- a/src/H5B2int.c
+++ b/src/H5B2int.c
@@ -35,6 +35,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5B2pkg.h" /* v2 B-trees */
#include "H5Eprivate.h" /* Error handling */
+#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vectors and arrays */
@@ -241,17 +242,17 @@ H5B2__split1(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node_ptr,
mid_record = old_node_nrec / 2;
/* Copy "upper half" of records to new child */
- HDmemcpy(H5B2_NAT_NREC(right_native, hdr, 0),
+ H5MM_memcpy(H5B2_NAT_NREC(right_native, hdr, 0),
H5B2_NAT_NREC(left_native, hdr, mid_record + (unsigned)1),
hdr->cls->nrec_size * (old_node_nrec - (mid_record + (unsigned)1)));
/* Copy "upper half" of node pointers, if the node is an internal node */
if(depth > 1)
- HDmemcpy(&(right_node_ptrs[0]), &(left_node_ptrs[mid_record + (unsigned)1]),
+ H5MM_memcpy(&(right_node_ptrs[0]), &(left_node_ptrs[mid_record + (unsigned)1]),
sizeof(H5B2_node_ptr_t) * (size_t)(old_node_nrec - mid_record));
/* Copy "middle" record to internal node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(left_native, hdr, mid_record), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(left_native, hdr, mid_record), hdr->cls->nrec_size);
/* Mark nodes as dirty */
left_child_flags |= H5AC__DIRTIED_FLAG;
@@ -510,14 +511,14 @@ H5B2__redistribute2(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
uint16_t move_nrec = (uint16_t)(*right_nrec - new_right_nrec); /* Number of records to move from right node to left */
/* Copy record from parent node down into left child */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* See if we need to move records from right node */
if(move_nrec > 1)
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, (*left_nrec + 1)), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (size_t)(move_nrec - 1));
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, (*left_nrec + 1)), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (size_t)(move_nrec - 1));
/* Move record from right node into parent node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(right_native, hdr, (move_nrec - 1)), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(right_native, hdr, (move_nrec - 1)), hdr->cls->nrec_size);
/* Slide records in right node down */
HDmemmove(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(right_native, hdr, move_nrec), hdr->cls->nrec_size * new_right_nrec);
@@ -534,7 +535,7 @@ H5B2__redistribute2(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
right_moved_nrec -= (hssize_t)moved_nrec;
/* Copy node pointers from right node to left */
- HDmemcpy(&(left_node_ptrs[*left_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * move_nrec);
+ H5MM_memcpy(&(left_node_ptrs[*left_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * move_nrec);
/* Slide node pointers in right node down */
HDmemmove(&(right_node_ptrs[0]), &(right_node_ptrs[move_nrec]), sizeof(H5B2_node_ptr_t) * (new_right_nrec + (unsigned)1));
@@ -569,14 +570,14 @@ H5B2__redistribute2(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
hdr->cls->nrec_size * (*right_nrec));
/* Copy record from parent node down into right child */
- HDmemcpy(H5B2_NAT_NREC(right_native, hdr, (move_nrec - 1)), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(right_native, hdr, (move_nrec - 1)), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* See if we need to move records from left node */
if(move_nrec > 1)
- HDmemcpy(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(left_native, hdr, ((*left_nrec - move_nrec) + 1)), hdr->cls->nrec_size * (size_t)(move_nrec - 1));
+ H5MM_memcpy(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(left_native, hdr, ((*left_nrec - move_nrec) + 1)), hdr->cls->nrec_size * (size_t)(move_nrec - 1));
/* Move record from left node into parent node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(left_native, hdr, (*left_nrec - move_nrec)), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(left_native, hdr, (*left_nrec - move_nrec)), hdr->cls->nrec_size);
/* Handle node pointers, if we have an internal node */
if(depth > 1) {
@@ -587,7 +588,7 @@ H5B2__redistribute2(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
HDmemmove(&(right_node_ptrs[move_nrec]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
/* Copy node pointers from left node to right */
- HDmemcpy(&(right_node_ptrs[0]), &(left_node_ptrs[new_left_nrec + 1]), sizeof(H5B2_node_ptr_t) * move_nrec);
+ H5MM_memcpy(&(right_node_ptrs[0]), &(left_node_ptrs[new_left_nrec + 1]), sizeof(H5B2_node_ptr_t) * move_nrec);
/* Count the number of records being moved */
for(u = 0; u < move_nrec; u++)
@@ -775,16 +776,16 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
uint16_t moved_middle_nrec = 0; /* Number of records moved into left node */
/* Move left parent record down to left node */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
/* Move records from middle node into left node */
if((new_left_nrec - 1) > *left_nrec) {
moved_middle_nrec = (uint16_t)(new_left_nrec - (*left_nrec + 1));
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(middle_native, hdr, 0), hdr->cls->nrec_size * moved_middle_nrec);
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(middle_native, hdr, 0), hdr->cls->nrec_size * moved_middle_nrec);
} /* end if */
/* Move record from middle node up to parent node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(middle_native, hdr, moved_middle_nrec), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(middle_native, hdr, moved_middle_nrec), hdr->cls->nrec_size);
moved_middle_nrec++;
/* Slide records in middle node down */
@@ -798,7 +799,7 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
/* Move middle node pointers into left node */
move_nptrs = (unsigned)(new_left_nrec - *left_nrec);
- HDmemcpy(&(left_node_ptrs[*left_nrec + 1]), &(middle_node_ptrs[0]), sizeof(H5B2_node_ptr_t)*move_nptrs);
+ H5MM_memcpy(&(left_node_ptrs[*left_nrec + 1]), &(middle_node_ptrs[0]), sizeof(H5B2_node_ptr_t)*move_nptrs);
/* Count the number of records being moved into the left node */
for(u = 0, moved_nrec = 0; u < move_nptrs; u++)
@@ -832,14 +833,14 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
HDmemmove(H5B2_NAT_NREC(right_native, hdr, right_nrec_move), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (*right_nrec));
/* Move right parent record down to right node */
- HDmemcpy(H5B2_NAT_NREC(right_native, hdr, right_nrec_move - 1), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(right_native, hdr, right_nrec_move - 1), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* Move records from middle node into right node */
if(right_nrec_move > 1)
- HDmemcpy(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(middle_native, hdr, ((curr_middle_nrec - right_nrec_move) + 1)), hdr->cls->nrec_size * (right_nrec_move - 1));
+ H5MM_memcpy(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(middle_native, hdr, ((curr_middle_nrec - right_nrec_move) + 1)), hdr->cls->nrec_size * (right_nrec_move - 1));
/* Move record from middle node up to parent node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(middle_native, hdr, (curr_middle_nrec - right_nrec_move)), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(middle_native, hdr, (curr_middle_nrec - right_nrec_move)), hdr->cls->nrec_size);
/* Move node pointers also if this is an internal node */
if(depth > 1) {
@@ -850,7 +851,7 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
HDmemmove(&(right_node_ptrs[right_nrec_move]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
/* Move middle node pointers into right node */
- HDmemcpy(&(right_node_ptrs[0]), &(middle_node_ptrs[(curr_middle_nrec - right_nrec_move) + 1]), sizeof(H5B2_node_ptr_t) * right_nrec_move);
+ H5MM_memcpy(&(right_node_ptrs[0]), &(middle_node_ptrs[(curr_middle_nrec - right_nrec_move) + 1]), sizeof(H5B2_node_ptr_t) * right_nrec_move);
/* Count the number of records being moved into the right node */
for(u = 0, moved_nrec = 0; u < right_nrec_move; u++)
@@ -881,14 +882,14 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
HDmemmove(H5B2_NAT_NREC(middle_native, hdr, left_nrec_move), H5B2_NAT_NREC(middle_native, hdr, 0), hdr->cls->nrec_size * curr_middle_nrec);
/* Move left parent record down to middle node */
- HDmemcpy(H5B2_NAT_NREC(middle_native, hdr, left_nrec_move - 1), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(middle_native, hdr, left_nrec_move - 1), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
/* Move left records to middle node */
if(left_nrec_move > 1)
HDmemmove(H5B2_NAT_NREC(middle_native, hdr, 0), H5B2_NAT_NREC(left_native, hdr, new_left_nrec + 1), hdr->cls->nrec_size * (left_nrec_move - 1));
/* Move left parent record up from left node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(left_native, hdr, new_left_nrec), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(left_native, hdr, new_left_nrec), hdr->cls->nrec_size);
/* Move node pointers also if this is an internal node */
if(depth > 1) {
@@ -899,7 +900,7 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
HDmemmove(&(middle_node_ptrs[left_nrec_move]), &(middle_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(curr_middle_nrec + 1));
/* Move left node pointers into middle node */
- HDmemcpy(&(middle_node_ptrs[0]), &(left_node_ptrs[new_left_nrec + 1]), sizeof(H5B2_node_ptr_t) * left_nrec_move);
+ H5MM_memcpy(&(middle_node_ptrs[0]), &(left_node_ptrs[new_left_nrec + 1]), sizeof(H5B2_node_ptr_t) * left_nrec_move);
/* Count the number of records being moved into the left node */
for(u = 0, moved_nrec = 0; u < left_nrec_move; u++)
@@ -927,13 +928,13 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
unsigned right_nrec_move = (unsigned)(*right_nrec - new_right_nrec); /* Number of records to move out of right node */
/* Move right parent record down to middle node */
- HDmemcpy(H5B2_NAT_NREC(middle_native, hdr, curr_middle_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(middle_native, hdr, curr_middle_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* Move right records to middle node */
HDmemmove(H5B2_NAT_NREC(middle_native, hdr, (curr_middle_nrec + 1)), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (right_nrec_move - 1));
/* Move right parent record up from right node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(right_native, hdr, right_nrec_move - 1), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx), H5B2_NAT_NREC(right_native, hdr, right_nrec_move - 1), hdr->cls->nrec_size);
/* Slide right records down */
HDmemmove(H5B2_NAT_NREC(right_native, hdr, 0), H5B2_NAT_NREC(right_native, hdr, right_nrec_move), hdr->cls->nrec_size * new_right_nrec);
@@ -944,7 +945,7 @@ H5B2__redistribute3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
unsigned u; /* Local index variable */
/* Move right node pointers into middle node */
- HDmemcpy(&(middle_node_ptrs[curr_middle_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * right_nrec_move);
+ H5MM_memcpy(&(middle_node_ptrs[curr_middle_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * right_nrec_move);
/* Count the number of records being moved into the right node */
for(u = 0, moved_nrec = 0; u < right_nrec_move; u++)
@@ -1113,14 +1114,14 @@ H5B2__merge2(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node_ptr,
/* Redistribute records into left node */
{
/* Copy record from parent node to proper location */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* Copy records from right node to left node */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (*right_nrec));
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (*right_nrec));
/* Copy node pointers from right node into left node */
if(depth > 1)
- HDmemcpy(&(left_node_ptrs[*left_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
+ H5MM_memcpy(&(left_node_ptrs[*left_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
/* Update flush dependencies for grandchildren, if using SWMR */
if(hdr->swmr_write && depth > 1)
@@ -1304,13 +1305,13 @@ H5B2__merge3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node_ptr,
middle_moved_nrec = middle_nrec_move;
/* Copy record from parent node to proper location in left node */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec), H5B2_INT_NREC(internal, hdr, idx - 1), hdr->cls->nrec_size);
/* Copy records from middle node to left node */
- HDmemcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(middle_native, hdr, 0), hdr->cls->nrec_size * (middle_nrec_move - 1));
+ H5MM_memcpy(H5B2_NAT_NREC(left_native, hdr, *left_nrec + 1), H5B2_NAT_NREC(middle_native, hdr, 0), hdr->cls->nrec_size * (middle_nrec_move - 1));
/* Copy record from middle node to proper location in parent node */
- HDmemcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(middle_native, hdr, (middle_nrec_move - 1)), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_INT_NREC(internal, hdr, idx - 1), H5B2_NAT_NREC(middle_native, hdr, (middle_nrec_move - 1)), hdr->cls->nrec_size);
/* Slide records in middle node down */
HDmemmove(H5B2_NAT_NREC(middle_native, hdr, 0), H5B2_NAT_NREC(middle_native, hdr, middle_nrec_move), hdr->cls->nrec_size * (*middle_nrec - middle_nrec_move));
@@ -1320,7 +1321,7 @@ H5B2__merge3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node_ptr,
unsigned u; /* Local index variable */
/* Copy node pointers from middle node into left node */
- HDmemcpy(&(left_node_ptrs[*left_nrec + 1]), &(middle_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * middle_nrec_move);
+ H5MM_memcpy(&(left_node_ptrs[*left_nrec + 1]), &(middle_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * middle_nrec_move);
/* Count the number of records being moved into the left node */
for(u = 0; u < middle_nrec_move; u++)
@@ -1348,15 +1349,15 @@ H5B2__merge3(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node_ptr,
/* Redistribute records into middle node */
{
/* Copy record from parent node to proper location in middle node */
- HDmemcpy(H5B2_NAT_NREC(middle_native, hdr, *middle_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(middle_native, hdr, *middle_nrec), H5B2_INT_NREC(internal, hdr, idx), hdr->cls->nrec_size);
/* Copy records from right node to middle node */
- HDmemcpy(H5B2_NAT_NREC(middle_native, hdr, *middle_nrec + 1), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (*right_nrec));
+ H5MM_memcpy(H5B2_NAT_NREC(middle_native, hdr, *middle_nrec + 1), H5B2_NAT_NREC(right_native, hdr, 0), hdr->cls->nrec_size * (*right_nrec));
/* Move node pointers also if this is an internal node */
if(depth > 1)
/* Copy node pointers from right node into middle node */
- HDmemcpy(&(middle_node_ptrs[*middle_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
+ H5MM_memcpy(&(middle_node_ptrs[*middle_nrec + 1]), &(right_node_ptrs[0]), sizeof(H5B2_node_ptr_t) * (size_t)(*right_nrec + 1));
/* Update flush dependencies for grandchildren, if using SWMR */
if(hdr->swmr_write && depth > 1)
@@ -1539,7 +1540,7 @@ H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B-tree internal node pointers")
/* Copy the node pointers */
- HDmemcpy(node_ptrs, internal->node_ptrs, (sizeof(H5B2_node_ptr_t) * (size_t)(curr_node->node_nrec + 1)));
+ H5MM_memcpy(node_ptrs, internal->node_ptrs, (sizeof(H5B2_node_ptr_t) * (size_t)(curr_node->node_nrec + 1)));
} /* end if */
else {
H5B2_leaf_t *leaf; /* Pointer to leaf node */
@@ -1559,7 +1560,7 @@ H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B-tree internal native keys")
/* Copy the native keys */
- HDmemcpy(native, node_native, (hdr->cls->nrec_size * curr_node->node_nrec));
+ H5MM_memcpy(native, node_native, (hdr->cls->nrec_size * curr_node->node_nrec));
/* Unlock the node */
if(H5AC_unprotect(hdr->f, curr_node_class, curr_node->addr, node, (unsigned)(hdr->swmr_write ? H5AC__PIN_ENTRY_FLAG : H5AC__NO_FLAGS_SET)) < 0)
diff --git a/src/H5B2leaf.c b/src/H5B2leaf.c
index 54d40ea..beca40c 100644
--- a/src/H5B2leaf.c
+++ b/src/H5B2leaf.c
@@ -412,7 +412,7 @@ H5B2__insert_leaf(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_node_ptr,
if(hdr->min_native_rec == NULL)
if(NULL == (hdr->min_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info")
- HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
if(idx == (unsigned)(leaf->nrec - 1)) {
@@ -420,7 +420,7 @@ H5B2__insert_leaf(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_node_ptr,
if(hdr->max_native_rec == NULL)
if(NULL == (hdr->max_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info")
- HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
} /* end if */
@@ -561,7 +561,7 @@ H5B2__update_leaf(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_node_ptr,
if(hdr->min_native_rec == NULL)
if(NULL == (hdr->min_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info")
- HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
if(idx == (unsigned)(leaf->nrec - 1)) {
@@ -569,7 +569,7 @@ H5B2__update_leaf(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_node_ptr,
if(hdr->max_native_rec == NULL)
if(NULL == (hdr->max_native_rec = H5MM_malloc(hdr->cls->nrec_size)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info")
- HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size);
} /* end if */
} /* end if */
} /* end if */
@@ -664,9 +664,9 @@ H5B2__swap_leaf(H5B2_hdr_t *hdr, uint16_t depth, H5B2_internal_t *internal,
} /* end else */
/* Swap records (use disk page as temporary buffer) */
- HDmemcpy(hdr->page, H5B2_NAT_NREC(child_native, hdr, 0), hdr->cls->nrec_size);
- HDmemcpy(H5B2_NAT_NREC(child_native, hdr, 0), swap_loc, hdr->cls->nrec_size);
- HDmemcpy(swap_loc, hdr->page, hdr->cls->nrec_size);
+ H5MM_memcpy(hdr->page, H5B2_NAT_NREC(child_native, hdr, 0), hdr->cls->nrec_size);
+ H5MM_memcpy(H5B2_NAT_NREC(child_native, hdr, 0), swap_loc, hdr->cls->nrec_size);
+ H5MM_memcpy(swap_loc, hdr->page, hdr->cls->nrec_size);
/* Mark parent as dirty */
*internal_flags_ptr |= H5AC__DIRTIED_FLAG;
diff --git a/src/H5Bcache.c b/src/H5Bcache.c
index a0a75c8..c2c7a80 100644
--- a/src/H5Bcache.c
+++ b/src/H5Bcache.c
@@ -35,6 +35,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5Bpkg.h" /* B-link trees */
#include "H5Eprivate.h" /* Error handling */
+#include "H5MMprivate.h" /* Memory management */
/****************/
@@ -304,7 +305,7 @@ H5B__cache_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len,
HDassert(shared->type->encode);
/* magic number */
- HDmemcpy(image, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC);
+ H5MM_memcpy(image, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += 4;
/* node type and level */
diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c
index c491783..665e826 100644
--- a/src/H5Bdbg.c
+++ b/src/H5Bdbg.c
@@ -193,13 +193,13 @@ H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata)
FUNC_ENTER_PACKAGE
if(0 == ncalls++) {
- if(H5DEBUG(B))
- fprintf(H5DEBUG(B), "H5B: debugging B-trees (expensive)\n");
+ if(H5DEBUG(B))
+ HDfprintf(H5DEBUG(B), "H5B: debugging B-trees (expensive)\n");
} /* end if */
/* Get shared info for B-tree */
if(NULL == (rc_shared = (type->get_shared)(f, udata)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
+ HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared);
HDassert(shared);
diff --git a/src/H5C.c b/src/H5C.c
index c1d9d17..ad2f762 100644
--- a/src/H5C.c
+++ b/src/H5C.c
@@ -1483,31 +1483,17 @@ H5C_insert_entry(H5F_t * f,
H5C__UPDATE_STATS_FOR_INSERTION(cache_ptr, entry_ptr)
#ifdef H5_HAVE_PARALLEL
- if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
- coll_access = (H5P_USER_TRUE == f->coll_md_read ? TRUE : FALSE);
-
- /* If not explicitly disabled, get the cmdr setting from the API context */
- if(!coll_access && H5P_FORCE_FALSE != f->coll_md_read)
- coll_access = H5CX_get_coll_metadata_read();
- } /* end if */
+ if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI))
+ coll_access = H5CX_get_coll_metadata_read();
entry_ptr->coll_access = coll_access;
if(coll_access) {
H5C__INSERT_IN_COLL_LIST(cache_ptr, entry_ptr, FAIL)
/* Make sure the size of the collective entries in the cache remain in check */
- if(H5P_USER_TRUE == f->coll_md_read) {
- if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100) {
- if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries")
- } /* end if */
- } /* end if */
- else {
- if(cache_ptr->max_cache_size * 40 < cache_ptr->coll_list_size * 100) {
- if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries")
- } /* end if */
- } /* end else */
+ if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100)
+ if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries")
} /* end if */
#endif
@@ -2243,13 +2229,8 @@ H5C_protect(H5F_t * f,
ring = H5CX_get_ring();
#ifdef H5_HAVE_PARALLEL
- if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
- coll_access = (H5P_USER_TRUE == f->coll_md_read ? TRUE : FALSE);
-
- /* If not explicitly disabled, get the cmdr setting from the API context */
- if(!coll_access && H5P_FORCE_FALSE != f->coll_md_read)
- coll_access = H5CX_get_coll_metadata_read();
- } /* end if */
+ if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI))
+ coll_access = H5CX_get_coll_metadata_read();
#endif /* H5_HAVE_PARALLEL */
/* first check to see if the target is in cache */
@@ -2286,7 +2267,7 @@ H5C_protect(H5F_t * f,
the entry in their cache still have to participate in the
bcast. */
#ifdef H5_HAVE_PARALLEL
- if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI) && coll_access) {
+ if(coll_access) {
if(!(entry_ptr->is_dirty) && !(entry_ptr->coll_access)) {
MPI_Comm comm; /* File MPI Communicator */
int mpi_code; /* MPI error code */
@@ -2304,7 +2285,7 @@ H5C_protect(H5F_t * f,
if(NULL == (entry_ptr->image_ptr = H5MM_malloc(entry_ptr->size + H5C_IMAGE_EXTRA_SPACE)))
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, NULL, "memory allocation failed for on disk image buffer")
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(((uint8_t *)entry_ptr->image_ptr) + entry_ptr->size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(((uint8_t *)entry_ptr->image_ptr) + entry_ptr->size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
if(0 == mpi_rank)
if(H5C__generate_image(f, cache_ptr, entry_ptr) < 0)
@@ -2601,21 +2582,11 @@ H5C_protect(H5F_t * f,
} /* end if */
#ifdef H5_HAVE_PARALLEL
- if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
- /* Make sure the size of the collective entries in the cache remain in check */
- if(coll_access) {
- if(H5P_USER_TRUE == f->coll_md_read) {
- if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100)
- if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries")
- } /* end if */
- else {
- if(cache_ptr->max_cache_size * 40 < cache_ptr->coll_list_size * 100)
- if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries")
- } /* end else */
- } /* end if */
- } /* end if */
+ /* Make sure the size of the collective entries in the cache remain in check */
+ if(coll_access)
+ if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100)
+ if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries")
#endif /* H5_HAVE_PARALLEL */
done:
@@ -6071,7 +6042,7 @@ H5C__flush_single_entry(H5F_t *f, H5C_cache_entry_t *entry_ptr, unsigned flags)
if(NULL == (entry_ptr->image_ptr = H5MM_malloc(entry_ptr->size + H5C_IMAGE_EXTRA_SPACE)))
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for on disk image buffer")
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(((uint8_t *)entry_ptr->image_ptr) + entry_ptr->size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(((uint8_t *)entry_ptr->image_ptr) + entry_ptr->size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
} /* end if */
@@ -6571,7 +6542,7 @@ H5C_load_entry(H5F_t * f,
if(NULL == (image = (uint8_t *)H5MM_malloc(len + H5C_IMAGE_EXTRA_SPACE)))
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, NULL, "memory allocation failed for on disk image buffer")
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(image + len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(image + len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
#ifdef H5_HAVE_PARALLEL
@@ -6609,7 +6580,7 @@ H5C_load_entry(H5F_t * f,
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, NULL, "image null after H5MM_realloc()")
image = (uint8_t *)new_image;
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(image + len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(image + len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
} /* end if */
@@ -6653,7 +6624,7 @@ H5C_load_entry(H5F_t * f,
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, NULL, "image null after H5MM_realloc()")
image = (uint8_t *)new_image;
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(image + actual_len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(image + actual_len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
if(actual_len > len) {
@@ -8485,7 +8456,7 @@ H5C__serialize_single_entry(H5F_t *f, H5C_t *cache_ptr, H5C_cache_entry_t *entry
if(NULL == (entry_ptr->image_ptr = H5MM_malloc(entry_ptr->size + H5C_IMAGE_EXTRA_SPACE)) )
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for on disk image buffer")
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(((uint8_t *)entry_ptr->image_ptr) + image_size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(((uint8_t *)entry_ptr->image_ptr) + image_size, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
} /* end if */
@@ -8602,7 +8573,7 @@ H5C__generate_image(H5F_t *f, H5C_t *cache_ptr, H5C_cache_entry_t *entry_ptr)
if(NULL == (entry_ptr->image_ptr = H5MM_realloc(entry_ptr->image_ptr, new_len + H5C_IMAGE_EXTRA_SPACE)))
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for on disk image buffer")
#if H5C_DO_MEMORY_SANITY_CHECKS
- HDmemcpy(((uint8_t *)entry_ptr->image_ptr) + new_len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
+ H5MM_memcpy(((uint8_t *)entry_ptr->image_ptr) + new_len, H5C_IMAGE_SANITY_VALUE, H5C_IMAGE_EXTRA_SPACE);
#endif /* H5C_DO_MEMORY_SANITY_CHECKS */
/* Update statistics for resizing the entry */
diff --git a/src/H5CX.c b/src/H5CX.c
index 3ad4649..2287805 100644
--- a/src/H5CX.c
+++ b/src/H5CX.c
@@ -53,7 +53,7 @@
* each thread individually. The association of contexts to threads will
* be handled by the pthread library.
*
- * In order for this macro to work, H5E__get_my_stack() must be preceeded
+ * In order for this macro to work, H5CX_get_my_context() must be preceeded
* by "H5CX_node_t *ctx =".
*/
#define H5CX_get_my_context() H5CX__get_context()
@@ -64,17 +64,22 @@
#define H5CX_get_my_context() (&H5CX_head_g)
#endif /* H5_HAVE_THREADSAFE */
+/* Common macro for the retrieving the pointer to a property list */
+#define H5CX_RETRIEVE_PLIST(PL, FAILVAL) \
+ /* Check if the property list is already available */ \
+ if(NULL == (*head)->ctx.PL) \
+ /* Get the property list pointer */ \
+ if(NULL == ((*head)->ctx.PL = (H5P_genplist_t *)H5I_object((*head)->ctx.H5_GLUE(PL,_id)))) \
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, (FAILVAL), "can't get property list")
+
/* Common macro for the duplicated code to retrieve properties from a property list */
#define H5CX_RETRIEVE_PROP_COMMON(PL, DEF_PL, PROP_NAME, PROP_FIELD) \
/* Check for default property list */ \
if((*head)->ctx.H5_GLUE(PL,_id) == (DEF_PL)) \
- HDmemcpy(&(*head)->ctx.PROP_FIELD, &H5_GLUE3(H5CX_def_,PL,_cache).PROP_FIELD, sizeof(H5_GLUE3(H5CX_def_,PL,_cache).PROP_FIELD)); \
+ H5MM_memcpy(&(*head)->ctx.PROP_FIELD, &H5_GLUE3(H5CX_def_,PL,_cache).PROP_FIELD, sizeof(H5_GLUE3(H5CX_def_,PL,_cache).PROP_FIELD)); \
else { \
- /* Check if the property list is already available */ \
- if(NULL == (*head)->ctx.PL) \
- /* Get the dataset transfer property list pointer */ \
- if(NULL == ((*head)->ctx.PL = (H5P_genplist_t *)H5I_object((*head)->ctx.H5_GLUE(PL,_id)))) \
- HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "can't get default dataset transfer property list") \
+ /* Retrieve the property list */ \
+ H5CX_RETRIEVE_PLIST(PL, FAIL) \
\
/* Get the property */ \
if(H5P_get((*head)->ctx.PL, (PROP_NAME), &(*head)->ctx.PROP_FIELD) < 0) \
@@ -108,11 +113,8 @@
\
/* Check if property exists in DXPL */ \
if(!(*head)->ctx.H5_GLUE(PROP_FIELD,_set)) { \
- /* Check if the property list is already available */ \
- if(NULL == (*head)->ctx.dxpl) \
- /* Get the dataset transfer property list pointer */ \
- if(NULL == ((*head)->ctx.dxpl = (H5P_genplist_t *)H5I_object((*head)->ctx.dxpl_id))) \
- HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "can't get default dataset transfer property list") \
+ /* Retrieve the dataset transfer property list */ \
+ H5CX_RETRIEVE_PLIST(dxpl, FAIL) \
\
if((check_prop = H5P_exist_plist((*head)->ctx.dxpl, PROP_NAME)) < 0) \
HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "error checking for property") \
@@ -129,15 +131,12 @@
/* Macro for the duplicated code to test and set properties for a property list */
#define H5CX_SET_PROP(PROP_NAME, PROP_FIELD) \
if((*head)->ctx.H5_GLUE(PROP_FIELD,_set)) { \
- /* Check if the property list is already available */ \
- if(NULL == (*head)->ctx.dxpl) \
- /* Get the dataset transfer property list pointer */ \
- if(NULL == ((*head)->ctx.dxpl = (H5P_genplist_t *)H5I_object((*head)->ctx.dxpl_id))) \
- HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, NULL, "can't get default dataset transfer property list") \
+ /* Retrieve the dataset transfer property list */ \
+ H5CX_RETRIEVE_PLIST(dxpl, NULL) \
\
- /* Set the chunk filter mask property */ \
+ /* Set the property */ \
if(H5P_set((*head)->ctx.dxpl, PROP_NAME, &(*head)->ctx.PROP_FIELD) < 0) \
- HGOTO_ERROR(H5E_CONTEXT, H5E_CANTSET, NULL, "error setting filter mask xfer property") \
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTSET, NULL, "error setting data xfer property") \
} /* end if */
#endif /* H5_HAVE_PARALLEL */
@@ -175,7 +174,7 @@
* corresponding property in the property list to be set when the API
* context is popped, when returning from the API routine. Note that the
* naming of these fields, <foo> and <foo>_set, is important for the
-* H5CX_TEST_SET_PROP and H5CX_SET_PROP macros to work properly.
+ * H5CX_TEST_SET_PROP and H5CX_SET_PROP macros to work properly.
*/
typedef struct H5CX_t {
/* DXPL */
@@ -186,6 +185,18 @@ typedef struct H5CX_t {
hid_t lapl_id; /* LAPL ID for API operation */
H5P_genplist_t *lapl; /* Link Access Property List */
+ /* DCPL */
+ hid_t dcpl_id; /* DCPL ID for API operation */
+ H5P_genplist_t *dcpl; /* Dataset Creation Property List */
+
+ /* DAPL */
+ hid_t dapl_id; /* DAPL ID for API operation */
+ H5P_genplist_t *dapl; /* Dataset Access Property List */
+
+ /* FAPL */
+ hid_t fapl_id; /* FAPL ID for API operation */
+ H5P_genplist_t *fapl; /* File Access Property List */
+
/* Internal: Object tagging info */
haddr_t tag; /* Current object's tag (ohdr chunk #0 address) */
@@ -274,6 +285,22 @@ typedef struct H5CX_t {
size_t nlinks; /* Number of soft / UD links to traverse (H5L_ACS_NLINKS_NAME) */
hbool_t nlinks_valid; /* Whether number of soft / UD links to traverse is valid */
+ /* Cached DCPL properties */
+ hbool_t do_min_dset_ohdr; /* Whether to minimize dataset object header */
+ hbool_t do_min_dset_ohdr_valid; /* Whether minimize dataset object header flag is valid */
+
+ /* Cached DAPL properties */
+ char *extfile_prefix; /* Prefix for external file */
+ hbool_t extfile_prefix_valid; /* Whether the prefix for external file is valid */
+ char *vds_prefix; /* Prefix for VDS */
+ hbool_t vds_prefix_valid; /* Whether the prefix for VDS is valid */
+
+ /* Cached FAPL properties */
+ H5F_libver_t low_bound; /* low_bound property for H5Pset_libver_bounds() */
+ hbool_t low_bound_valid; /* Whether low_bound property is valid */
+ H5F_libver_t high_bound; /* high_bound property for H5Pset_libver_bounds */
+ hbool_t high_bound_valid; /* Whether high_bound property is valid */
+
/* Cached VOL settings */
H5VL_connector_prop_t vol_connector_prop; /* Property for VOL connector ID & info */
hbool_t vol_connector_prop_valid; /* Whether property for VOL connector ID & info is valid */
@@ -328,6 +355,25 @@ typedef struct H5CX_lapl_cache_t {
size_t nlinks; /* Number of soft / UD links to traverse (H5L_ACS_NLINKS_NAME) */
} H5CX_lapl_cache_t;
+/* Typedef for cached default dataset creation property list information */
+/* (Same as the cached DXPL struct, above, except for the default DCPL) */
+typedef struct H5CX_dcpl_cache_t {
+ hbool_t do_min_dset_ohdr; /* Whether to minimize dataset object header */
+} H5CX_dcpl_cache_t;
+
+/* Typedef for cached default dataset access property list information */
+/* (Same as the cached DXPL struct, above, except for the default DXPL) */
+typedef struct H5CX_dapl_cache_t {
+ char *extfile_prefix; /* Prefix for external file */
+ char *vds_prefix; /* Prefix for VDS */
+} H5CX_dapl_cache_t;
+
+/* Typedef for cached default file access property list information */
+/* (Same as the cached DXPL struct, above, except for the default DCPL) */
+typedef struct H5CX_fapl_cache_t {
+ H5F_libver_t low_bound; /* low_bound property for H5Pset_libver_bounds() */
+ H5F_libver_t high_bound; /* high_bound property for H5Pset_libver_bounds */
+} H5CX_fapl_cache_t;
/********************/
/* Local Prototypes */
@@ -361,9 +407,21 @@ static H5CX_dxpl_cache_t H5CX_def_dxpl_cache;
/* Define a "default" link access property list cache structure to use for default LAPLs */
static H5CX_lapl_cache_t H5CX_def_lapl_cache;
+/* Define a "default" dataset creation property list cache structure to use for default DCPLs */
+static H5CX_dcpl_cache_t H5CX_def_dcpl_cache;
+
+/* Define a "default" dataset access property list cache structure to use for default DAPLs */
+static H5CX_dapl_cache_t H5CX_def_dapl_cache;
+
+/* Define a "default" file access property list cache structure to use for default FAPLs */
+static H5CX_fapl_cache_t H5CX_def_fapl_cache;
+
/* Declare a static free list to manage H5CX_node_t structs */
H5FL_DEFINE_STATIC(H5CX_node_t);
+/* Declare a static free list to manage H5CX_state_t structs */
+H5FL_DEFINE_STATIC(H5CX_state_t);
+
/*--------------------------------------------------------------------------
@@ -381,6 +439,9 @@ H5CX__init_package(void)
{
H5P_genplist_t *dx_plist; /* Data transfer property list */
H5P_genplist_t *la_plist; /* Link access property list */
+ H5P_genplist_t *dc_plist; /* Dataset creation property list */
+ H5P_genplist_t *da_plist; /* Dataset access property list */
+ H5P_genplist_t *fa_plist; /* File access property list */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -480,6 +541,53 @@ H5CX__init_package(void)
if(H5P_get(la_plist, H5L_ACS_NLINKS_NAME, &H5CX_def_lapl_cache.nlinks) < 0)
HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve number of soft / UD links to traverse")
+
+ /* Reset the "default DCPL cache" information */
+ HDmemset(&H5CX_def_dcpl_cache, 0, sizeof(H5CX_dcpl_cache_t));
+
+ /* Get the default DCPL cache information */
+
+ /* Get the default dataset creation property list */
+ if(NULL == (dc_plist = (H5P_genplist_t *)H5I_object(H5P_DATASET_CREATE_DEFAULT)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "not a dataset create property list")
+
+ /* Get flag to indicate whether to minimize dataset object header */
+ if(H5P_get(dc_plist, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, &H5CX_def_dcpl_cache.do_min_dset_ohdr) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve dataset minimize flag")
+
+ /* Reset the "default DAPL cache" information */
+ HDmemset(&H5CX_def_dapl_cache, 0, sizeof(H5CX_dapl_cache_t));
+
+ /* Get the default DAPL cache information */
+
+ /* Get the default dataset access property list */
+ if(NULL == (da_plist = (H5P_genplist_t *)H5I_object(H5P_DATASET_ACCESS_DEFAULT)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "not a dataset create property list")
+
+ /* Get the prefix for the external file */
+ if(H5P_peek(da_plist, H5D_ACS_EFILE_PREFIX_NAME, &H5CX_def_dapl_cache.extfile_prefix) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve prefix for external file")
+
+ /* Get the prefix for the VDS file */
+ if(H5P_peek(da_plist, H5D_ACS_VDS_PREFIX_NAME, &H5CX_def_dapl_cache.vds_prefix) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve prefix for VDS")
+
+ /* Reset the "default FAPL cache" information */
+ HDmemset(&H5CX_def_fapl_cache, 0, sizeof(H5CX_fapl_cache_t));
+
+ /* Get the default FAPL cache information */
+
+ /* Get the default file access property list */
+ if(NULL == (fa_plist = (H5P_genplist_t *)H5I_object(H5P_FILE_ACCESS_DEFAULT)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "not a dataset create property list")
+
+ /* Get low_bound */
+ if(H5P_get(fa_plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &H5CX_def_fapl_cache.low_bound) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve dataset minimize flag")
+
+ if(H5P_get(fa_plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &H5CX_def_fapl_cache.high_bound) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve dataset minimize flag")
+
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5CX__init_package() */
@@ -603,7 +711,10 @@ H5CX__push_common(H5CX_node_t *cnode)
/* Set non-zero context info */
cnode->ctx.dxpl_id = H5P_DATASET_XFER_DEFAULT;
+ cnode->ctx.dcpl_id = H5P_DATASET_CREATE_DEFAULT;
+ cnode->ctx.dapl_id = H5P_DATASET_ACCESS_DEFAULT;
cnode->ctx.lapl_id = H5P_LINK_ACCESS_DEFAULT;
+ cnode->ctx.fapl_id = H5P_FILE_ACCESS_DEFAULT;
cnode->ctx.tag = H5AC__INVALID_TAG;
cnode->ctx.ring = H5AC_RING_USER;
@@ -680,6 +791,217 @@ H5CX_push_special(void)
/*-------------------------------------------------------------------------
+ * Function: H5CX_retrieve_state
+ *
+ * Purpose: Retrieve the state of an API context, for later resumption.
+ *
+ * Note: This routine _only_ tracks the state of API context information
+ * set before the VOL callback is invoked, not values that are
+ * set internal to the library. It's main purpose is to provide
+ * API context state to VOL connectors.
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * January 8, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_retrieve_state(H5CX_state_t **api_state)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(head && *head);
+ HDassert(api_state);
+
+ /* Allocate & clear API context state */
+ if(NULL == (*api_state = H5FL_CALLOC(H5CX_state_t)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTALLOC, FAIL, "unable to allocate new API context state")
+
+ /* Check for non-default DXPL */
+ if(H5P_DATASET_XFER_DEFAULT != (*head)->ctx.dxpl_id) {
+ /* Retrieve the DXPL property list */
+ H5CX_RETRIEVE_PLIST(dxpl, FAIL)
+
+ /* Copy the DXPL ID */
+ if(((*api_state)->dxpl_id = H5P_copy_plist((H5P_genplist_t *)(*head)->ctx.dxpl, FALSE)) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTCOPY, FAIL, "can't copy property list")
+ } /* end if */
+ else
+ (*api_state)->dxpl_id = H5P_DATASET_XFER_DEFAULT;
+
+ /* Check for non-default LAPL */
+ if(H5P_LINK_ACCESS_DEFAULT != (*head)->ctx.lapl_id) {
+ /* Retrieve the LAPL property list */
+ H5CX_RETRIEVE_PLIST(lapl, FAIL)
+
+ /* Copy the LAPL ID */
+ if(((*api_state)->lapl_id = H5P_copy_plist((H5P_genplist_t *)(*head)->ctx.lapl, FALSE)) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTCOPY, FAIL, "can't copy property list")
+ } /* end if */
+ else
+ (*api_state)->lapl_id = H5P_LINK_ACCESS_DEFAULT;
+
+ /* Keep a reference to the current VOL wrapping context */
+ (*api_state)->vol_wrap_ctx = (*head)->ctx.vol_wrap_ctx;
+ if(NULL != (*api_state)->vol_wrap_ctx)
+ if(H5VL_inc_vol_wrapper((*api_state)->vol_wrap_ctx) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTINC, FAIL, "can't increment refcount on VOL wrapping context")
+
+ /* Keep a copy of the VOL connector property, if there is one */
+ if((*head)->ctx.vol_connector_prop_valid && (*head)->ctx.vol_connector_prop.connector_id > 0) {
+ /* Get the connector property */
+ H5MM_memcpy(&(*api_state)->vol_connector_prop, &(*head)->ctx.vol_connector_prop, sizeof(H5VL_connector_prop_t));
+
+ /* Check for actual VOL connector property */
+ if((*api_state)->vol_connector_prop.connector_id) {
+ /* Copy connector info, if it exists */
+ if((*api_state)->vol_connector_prop.connector_info) {
+ H5VL_class_t *connector; /* Pointer to connector */
+ void *new_connector_info = NULL; /* Copy of connector info */
+
+ /* Retrieve the connector for the ID */
+ if(NULL == (connector = (H5VL_class_t *)H5I_object((*api_state)->vol_connector_prop.connector_id)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "not a VOL connector ID")
+
+ /* Allocate and copy connector info */
+ if(H5VL_copy_connector_info(connector, &new_connector_info, (*api_state)->vol_connector_prop.connector_info) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTCOPY, FAIL, "connector info copy failed")
+ (*api_state)->vol_connector_prop.connector_info = new_connector_info;
+ } /* end if */
+
+ /* Increment the refcount on the connector ID */
+ if(H5I_inc_ref((*api_state)->vol_connector_prop.connector_id, FALSE) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTINC, FAIL, "incrementing VOL connector ID failed")
+ } /* end if */
+ } /* end if */
+
+#ifdef H5_HAVE_PARALLEL
+ /* Save parallel I/O settings */
+ (*api_state)->coll_metadata_read = (*head)->ctx.coll_metadata_read;
+#endif /* H5_HAVE_PARALLEL */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_retrieve_state() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_restore_state
+ *
+ * Purpose: Restore an API context, from a previously retrieved state.
+ *
+ * Note: This routine _only_ resets the state of API context information
+ * set before the VOL callback is invoked, not values that are
+ * set internal to the library. It's main purpose is to restore
+ * API context state from VOL connectors.
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * January 9, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_restore_state(const H5CX_state_t *api_state)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ /* Sanity check */
+ HDassert(head && *head);
+ HDassert(api_state);
+
+ /* Restore the DXPL info */
+ (*head)->ctx.dxpl_id = api_state->dxpl_id;
+ (*head)->ctx.dxpl = NULL;
+
+ /* Restore the LAPL info */
+ (*head)->ctx.lapl_id = api_state->lapl_id;
+ (*head)->ctx.lapl = NULL;
+
+ /* Restore the VOL wrapper context */
+ (*head)->ctx.vol_wrap_ctx = api_state->vol_wrap_ctx;
+
+ /* Restore the VOL connector info */
+ if(api_state->vol_connector_prop.connector_id) {
+ H5MM_memcpy(&(*head)->ctx.vol_connector_prop, &api_state->vol_connector_prop, sizeof(H5VL_connector_prop_t));
+ (*head)->ctx.vol_connector_prop_valid = TRUE;
+ } /* end if */
+
+#ifdef H5_HAVE_PARALLEL
+ /* Restore parallel I/O settings */
+ (*head)->ctx.coll_metadata_read = api_state->coll_metadata_read;
+#endif /* H5_HAVE_PARALLEL */
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5CX_restore_state() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_free_state
+ *
+ * Purpose: Free a previously retrievedAPI context state
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * January 9, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_free_state(H5CX_state_t *api_state)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(api_state);
+
+ /* Release the DXPL */
+ if(api_state->dxpl_id != H5P_DATASET_XFER_DEFAULT)
+ if(H5I_dec_ref(api_state->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTDEC, FAIL, "can't decrement refcount on DXPL")
+
+ /* Release the LAPL */
+ if(api_state->lapl_id != H5P_LINK_ACCESS_DEFAULT)
+ if(H5I_dec_ref(api_state->lapl_id) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTDEC, FAIL, "can't decrement refcount on LAPL")
+
+ /* Release the VOL wrapper context */
+ if(api_state->vol_wrap_ctx)
+ if(H5VL_dec_vol_wrapper(api_state->vol_wrap_ctx) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTDEC, FAIL, "can't decrement refcount on VOL wrapping context")
+
+ /* Release the VOL connector property, if it was set */
+ if(api_state->vol_connector_prop.connector_id) {
+ /* Clean up any VOL connector info */
+ if(api_state->vol_connector_prop.connector_info)
+ if(H5VL_free_connector_info(api_state->vol_connector_prop.connector_id, api_state->vol_connector_prop.connector_info) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTRELEASE, FAIL, "unable to release VOL connector info object")
+ /* Decrement connector ID */
+ if(H5I_dec_ref(api_state->vol_connector_prop.connector_id) < 0)
+ HDONE_ERROR(H5E_CONTEXT, H5E_CANTDEC, FAIL, "can't close VOL connector ID")
+ } /* end if */
+
+ /* Free the state */
+ api_state = H5FL_FREE(H5CX_state_t, api_state);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_free_state() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5CX_is_def_dxpl
*
* Purpose: Checks if the API context is using the library's default DXPL
@@ -735,6 +1057,71 @@ H5CX_set_dxpl(hid_t dxpl_id)
/*-------------------------------------------------------------------------
+ * Function: H5CX_set_dcpl
+ *
+ * Purpose: Sets the DCPL for the current API call context.
+ *
+ * Return: <none>
+ *
+ * Programmer: Quincey Koziol
+ * March 6, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+H5CX_set_dcpl(hid_t dcpl_id)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ /* Sanity check */
+ HDassert(*head);
+
+ /* Set the API context's DCPL to a new value */
+ (*head)->ctx.dcpl_id = dcpl_id;
+
+ FUNC_LEAVE_NOAPI_VOID
+} /* end H5CX_set_dcpl() */
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_set_libver_bounds
+ *
+ * Purpose: Sets the low/high bounds according to "f" for the current API call context.
+ * When "f" is NULL, the low/high bounds are set to latest format.
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Vailin Choi
+ * March 27, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_set_libver_bounds(H5F_t *f)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(head && *head);
+
+ /* Set the API context value */
+ (*head)->ctx.low_bound = (f == NULL) ? H5F_LIBVER_LATEST : H5F_LOW_BOUND(f);
+ (*head)->ctx.high_bound = (f == NULL) ? H5F_LIBVER_LATEST : H5F_HIGH_BOUND(f);
+
+ /* Mark the values as valid */
+ (*head)->ctx.low_bound_valid = TRUE;
+ (*head)->ctx.high_bound_valid = TRUE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_set_libver_bounds() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5CX_set_lapl
*
* Purpose: Sets the LAPL for the current API call context.
@@ -803,6 +1190,8 @@ H5CX_set_apl(hid_t *acspl_id, const H5P_libclass_t *libclass,
*acspl_id = *libclass->def_plist_id;
else {
htri_t is_lapl; /* Whether the access property list is (or is derived from) a link access property list */
+ htri_t is_dapl; /* Whether the access property list is (or is derived from) a dataset access property list */
+ htri_t is_fapl; /* Whether the access property list is (or is derived from) a file access property list */
#ifdef H5CX_DEBUG
/* Sanity check the access property list class */
@@ -816,10 +1205,22 @@ H5CX_set_apl(hid_t *acspl_id, const H5P_libclass_t *libclass,
else if(is_lapl)
(*head)->ctx.lapl_id = *acspl_id;
+ /* Check for dataset access property and set API context if so */
+ if((is_dapl = H5P_class_isa(*libclass->pclass, *H5P_CLS_DACC->pclass)) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "can't check for dataset access class")
+ else if(is_dapl)
+ (*head)->ctx.dapl_id = *acspl_id;
+
+ /* Check for file access property and set API context if so */
+ if((is_fapl = H5P_class_isa(*libclass->pclass, *H5P_CLS_FACC->pclass)) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "can't check for file access class")
+ else if(is_fapl)
+ (*head)->ctx.fapl_id = *acspl_id;
+
#ifdef H5_HAVE_PARALLEL
/* If this routine is not guaranteed to be collective (i.e. it doesn't
- * modify the structural metadata in a file), check if we should use
- * a collective metadata read.
+ * modify the structural metadata in a file), check if the application
+ * specified a collective metadata read for just this operation.
*/
if(!is_collective) {
H5P_genplist_t *plist; /* Property list pointer */
@@ -893,6 +1294,7 @@ H5CX_set_loc(hid_t
#endif /* H5_HAVE_PARALLEL */
loc_id)
{
+#ifdef H5_HAVE_PARALLEL
H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
herr_t ret_value = SUCCEED; /* Return value */
@@ -901,7 +1303,6 @@ H5CX_set_loc(hid_t
/* Sanity check */
HDassert(head && *head);
-#ifdef H5_HAVE_PARALLEL
/* Set collective metadata read flag */
(*head)->ctx.coll_metadata_read = TRUE;
@@ -922,10 +1323,14 @@ H5CX_set_loc(hid_t
if(mpi_comm != MPI_COMM_NULL)
MPI_Barrier(mpi_comm);
} /* end if */
-#endif /* H5_HAVE_PARALLEL */
done:
FUNC_LEAVE_NOAPI(ret_value)
+#else /* H5_HAVE_PARALLEL */
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+#endif /* H5_HAVE_PARALLEL */
} /* end H5CX_set_loc() */
@@ -987,7 +1392,7 @@ H5CX_set_vol_connector_prop(const H5VL_connector_prop_t *vol_connector_prop)
HDassert(head && *head);
/* Set the API context value */
- HDmemcpy(&(*head)->ctx.vol_connector_prop, vol_connector_prop, sizeof(H5VL_connector_prop_t));
+ H5MM_memcpy(&(*head)->ctx.vol_connector_prop, vol_connector_prop, sizeof(H5VL_connector_prop_t));
/* Mark the value as valid */
(*head)->ctx.vol_connector_prop_valid = TRUE;
@@ -1112,7 +1517,7 @@ H5CX_get_vol_connector_prop(H5VL_connector_prop_t *vol_connector_prop)
/* Check for value that was set */
if((*head)->ctx.vol_connector_prop_valid)
/* Get the value */
- HDmemcpy(vol_connector_prop, &(*head)->ctx.vol_connector_prop, sizeof(H5VL_connector_prop_t));
+ H5MM_memcpy(vol_connector_prop, &(*head)->ctx.vol_connector_prop, sizeof(H5VL_connector_prop_t));
else
HDmemset(vol_connector_prop, 0, sizeof(H5VL_connector_prop_t));
@@ -1343,7 +1748,7 @@ H5CX_get_btree_split_ratios(double split_ratio[3])
H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_BTREE_SPLIT_RATIO_NAME, btree_split_ratio)
/* Get the B-tree split ratio values */
- HDmemcpy(split_ratio, &(*head)->ctx.btree_split_ratio, sizeof((*head)->ctx.btree_split_ratio));
+ H5MM_memcpy(split_ratio, &(*head)->ctx.btree_split_ratio, sizeof((*head)->ctx.btree_split_ratio));
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -2028,6 +2433,193 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5CX_get_nlinks() */
+/*-------------------------------------------------------------------------
+ * Function: H5CX_get_libver_bounds
+ *
+ * Purpose: Retrieves the low/high bounds for the current API call context.
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Vailin Choi
+ * March 27, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_get_libver_bounds(H5F_libver_t *low_bound, H5F_libver_t *high_bound)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(low_bound);
+ HDassert(high_bound);
+ HDassert(head && *head);
+ HDassert(H5P_DEFAULT != (*head)->ctx.fapl_id);
+
+ H5CX_RETRIEVE_PROP_VALID(fapl, H5P_FILE_ACCESS_DEFAULT, H5F_ACS_LIBVER_LOW_BOUND_NAME, low_bound)
+ H5CX_RETRIEVE_PROP_VALID(fapl, H5P_FILE_ACCESS_DEFAULT, H5F_ACS_LIBVER_HIGH_BOUND_NAME, high_bound)
+
+ /* Get the values */
+ *low_bound = (*head)->ctx.low_bound;
+ *high_bound = (*head)->ctx.high_bound;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_get_libver_bounds() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_get_dset_min_ohdr_flag
+ *
+ * Purpose: Retrieves the flag that indicates whether the dataset object
+ * header should be minimized
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * March 6, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_get_dset_min_ohdr_flag(hbool_t *dset_min_ohdr_flag)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(dset_min_ohdr_flag);
+ HDassert(head && *head);
+ HDassert(H5P_DEFAULT != (*head)->ctx.dcpl_id);
+
+ H5CX_RETRIEVE_PROP_VALID(dcpl, H5P_DATASET_CREATE_DEFAULT, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, do_min_dset_ohdr)
+
+ /* Get the value */
+ *dset_min_ohdr_flag = (*head)->ctx.do_min_dset_ohdr;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_get_dset_min_ohdr_flag() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_get_ext_file_prefix
+ *
+ * Purpose: Retrieves the prefix for external file
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Raymond Lu
+ * March 6, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_get_ext_file_prefix(char **extfile_prefix)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(extfile_prefix);
+ HDassert(head && *head);
+ HDassert(H5P_DEFAULT != (*head)->ctx.dapl_id);
+
+ /* Check if the value has been retrieved already */
+ if(!(*head)->ctx.extfile_prefix_valid) {
+ /* Check for default DAPL */
+ if((*head)->ctx.dapl_id == H5P_DATASET_ACCESS_DEFAULT)
+ (*head)->ctx.extfile_prefix = H5CX_def_dapl_cache.extfile_prefix;
+ else {
+ /* Check if the property list is already available */
+ if(NULL == (*head)->ctx.dapl)
+ /* Get the dataset access property list pointer */
+ if(NULL == ((*head)->ctx.dapl = (H5P_genplist_t *)H5I_object((*head)->ctx.dapl_id)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "can't get default dataset access property list")
+
+ /* Get the prefix for the external file */
+ /* (Note: 'peek', not 'get' - if this turns out to be a problem, we may need
+ * to copy it and free this in the H5CX pop routine. -QAK)
+ */
+ if(H5P_peek((*head)->ctx.dapl, H5D_ACS_EFILE_PREFIX_NAME, &(*head)->ctx.extfile_prefix) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve external file prefix")
+ } /* end else */
+
+ /* Mark the value as valid */
+ (*head)->ctx.extfile_prefix_valid = TRUE;
+ } /* end if */
+
+ /* Get the value */
+ *extfile_prefix = (*head)->ctx.extfile_prefix;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_get_ext_file_prefix() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5CX_get_vds_prefix
+ *
+ * Purpose: Retrieves the prefix for VDS
+ *
+ * Return: Non-negative on success / Negative on failure
+ *
+ * Programmer: Raymond Lu
+ * March 6, 2019
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5CX_get_vds_prefix(char **vds_prefix)
+{
+ H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(vds_prefix);
+ HDassert(head && *head);
+ HDassert(H5P_DEFAULT != (*head)->ctx.dapl_id);
+
+ /* Check if the value has been retrieved already */
+ if(!(*head)->ctx.vds_prefix_valid) {
+ /* Check for default DAPL */
+ if((*head)->ctx.dapl_id == H5P_DATASET_ACCESS_DEFAULT)
+ (*head)->ctx.vds_prefix = H5CX_def_dapl_cache.vds_prefix;
+ else {
+ /* Check if the property list is already available */
+ if(NULL == (*head)->ctx.dapl)
+ /* Get the dataset access property list pointer */
+ if(NULL == ((*head)->ctx.dapl = (H5P_genplist_t *)H5I_object((*head)->ctx.dapl_id)))
+ HGOTO_ERROR(H5E_CONTEXT, H5E_BADTYPE, FAIL, "can't get default dataset access property list")
+
+ /* Get the prefix for the VDS */
+ /* (Note: 'peek', not 'get' - if this turns out to be a problem, we may need
+ * to copy it and free this in the H5CX pop routine. -QAK)
+ */
+ if(H5P_peek((*head)->ctx.dapl, H5D_ACS_VDS_PREFIX_NAME, &(*head)->ctx.vds_prefix) < 0)
+ HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve VDS prefix")
+ } /* end else */
+
+ /* Mark the value as valid */
+ (*head)->ctx.vds_prefix_valid = TRUE;
+ } /* end if */
+
+ /* Get the value */
+ *vds_prefix = (*head)->ctx.vds_prefix;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5CX_get_vds_prefix() */
+
/*-------------------------------------------------------------------------
* Function: H5CX_set_tag
diff --git a/src/H5CXprivate.h b/src/H5CXprivate.h