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authorWilliam Joye <wjoye@cfa.harvard.edu>2016-10-27 17:38:41 (GMT)
committerWilliam Joye <wjoye@cfa.harvard.edu>2016-10-27 17:38:41 (GMT)
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+.\" ========================================================================
+.\"
+.IX Title "funhist 1"
+.TH funhist 1 "April 14, 2011" "version 1.4.5" "SAORD Documentation"
+.SH "NAME"
+funhist \- create a 1D histogram of a column (from a FITS binary table or raw event file) or an image
+.SH "SYNOPSIS"
+.IX Header "SYNOPSIS"
+\&\fBfunhist\fR [\-n|\-w|\-T] <iname> [column] [[lo:hi:]bins]
+.SH "OPTIONS"
+.IX Header "OPTIONS"
+.Vb 3
+\& \-n # normalize bin value by the width of each bin
+\& \-w # specify bin width instead of number of bins in arg3
+\& \-T # output in rdb/starbase format (tab separators)
+.Ve
+.SH "DESCRIPTION"
+.IX Header "DESCRIPTION"
+\&\fBfunhist\fR creates a one-dimensional histogram from the specified
+columns of a \s-1FITS\s0 Extension
+binary table of a \s-1FITS\s0 file (or from a non-FITS raw event file), or
+from a \s-1FITS\s0 image or array, and writes that histogram as an \s-1ASCII\s0
+table. Alternatively, the program can perform a 1D projection of one
+of the image axes.
+.PP
+The first argument to the program is required, and specifies the
+Funtools file: \s-1FITS\s0 table or image, raw event file, or array. If
+\&\*(L"stdin\*(R" is specified, data are read from the standard input. Use
+Funtools Bracket Notation to specify \s-1FITS\s0
+extensions, and filters.
+.PP
+For a table, the second argument also is required. It specifies the
+column to use in generating the histogram. If the data file is of
+type image (or array), the column is optional: if \*(L"x\*(R" (or \*(L"X\*(R"), \*(L"y\*(R"
+(or \*(L"Y\*(R") is specified, then a projection is performed over the x
+(dim1) or y (dim2) axes, respectively. (That is, this projection will
+give the same results as a histogram performed on a table containing
+the equivalent x,y event rows.) If no column name is specified or
+\&\*(L"xy\*(R" (or \*(L"\s-1XY\s0\*(R") is specified for the image, then a histogram is
+performed on the values contained in the image pixels.
+.PP
+The argument that follows is optional and specifies the number of bins
+to use in creating the histogram and, if desired, the range of bin
+values. For image and table histograms, the range should specify the
+min and max data values. For image histograms on the x and y axes,
+the range should specify the min and max image bin values. If this
+argument is omitted, the number of output bins for a table is
+calculated either from the \s-1TLMIN/TLMAX\s0 headers values (if these exist
+in the table \s-1FITS\s0 header for the specified column) or by going through
+the data to calculate the min and max value. For an image, the number
+of output bins is calculated either from the \s-1DATAMIN/DATAMAX\s0 header
+values, or by going through the data to calculate min and max value.
+(Note that this latter calculation might fail if the image cannot be
+fit in memory.) If the data are floating point (table or image) and
+the number of bins is not specified, an arbitrary default of 128 is
+used.
+.PP
+For binary table processing, the \fB\-w\fR (bin width) switch can be used
+to specify the width of each bin rather than the number of bins. Thus:
+.PP
+.Vb 1
+\& funhist test.ev pha 1:100:5
+.Ve
+.PP
+means that 5 bins of width 20 are used in the histogram, while:
+.PP
+.Vb 1
+\& funhist \-w test.ev pha 1:100:5
+.Ve
+.PP
+means that 20 bins of width 5 are used in the histogram.
+.PP
+The data are divvied up into the specified number of bins and the
+resulting 1D histogram (or projection) is output in \s-1ASCII\s0 table
+format. For a table, the output displays the low_edge (inclusive) and
+hi_edge (exclusive) values for the data. For example, a 15\-row table
+containing a \*(L"pha\*(R" column whose values range from \-7.5 to 7.5
+can be processed thus:
+.PP
+.Vb 4
+\& [sh] funhist test.ev pha
+\& # data file: /home/eric/data/test.ev
+\& # column: pha
+\& # min,max,bins: \-7.5 7.5 15
+.Ve
+.PP
+.Vb 17
+\& bin value lo_edge hi_edge
+\& ------ --------- --------------------- ---------------------
+\& 1 22 \-7.50000000 \-6.50000000
+\& 2 21 \-6.50000000 \-5.50000000
+\& 3 20 \-5.50000000 \-4.50000000
+\& 4 19 \-4.50000000 \-3.50000000
+\& 5 18 \-3.50000000 \-2.50000000
+\& 6 17 \-2.50000000 \-1.50000000
+\& 7 16 \-1.50000000 \-0.50000000
+\& 8 30 \-0.50000000 0.50000000
+\& 9 16 0.50000000 1.50000000
+\& 10 17 1.50000000 2.50000000
+\& 11 18 2.50000000 3.50000000
+\& 12 19 3.50000000 4.50000000
+\& 13 20 4.50000000 5.50000000
+\& 14 21 5.50000000 6.50000000
+\& 15 22 6.50000000 7.50000000
+.Ve
+.PP
+.Vb 4
+\& [sh] funhist test.ev pha 1:6
+\& # data file: /home/eric/data/test.ev
+\& # column: pha
+\& # min,max,bins: 0.5 6.5 6
+.Ve
+.PP
+.Vb 8
+\& bin value lo_edge hi_edge
+\& ------ --------- --------------------- ---------------------
+\& 1 16 0.50000000 1.50000000
+\& 2 17 1.50000000 2.50000000
+\& 3 18 2.50000000 3.50000000
+\& 4 19 3.50000000 4.50000000
+\& 5 20 4.50000000 5.50000000
+\& 6 21 5.50000000 6.50000000
+.Ve
+.PP
+.Vb 4
+\& [sh] funhist test.ev pha 1:6:3
+\& # data file: /home/eric/data/test.ev
+\& # column: pha
+\& # min,max,bins: 0.5 6.5 3
+.Ve
+.PP
+.Vb 5
+\& bin value lo_edge hi_edge
+\& ------ --------- --------------------- ---------------------
+\& 1 33 0.50000000 2.50000000
+\& 2 37 2.50000000 4.50000000
+\& 3 41 4.50000000 6.50000000
+.Ve
+.PP
+For a table histogram, the \fB\-n\fR(normalize) switch can be used to
+normalize the bin value by the width of the bin (i.e., hi_edge\-lo_edge):
+.PP
+.Vb 5
+\& [sh] funhist \-n test.ev pha 1:6:3
+\& # data file: test.ev
+\& # column: pha
+\& # min,max,bins: 0.5 6.5 3
+\& # width normalization (val/(hi_edge-lo_edge)) is applied
+.Ve
+.PP
+.Vb 5
+\& bin value lo_edge hi_edge
+\& ------ --------------------- --------------------- ---------------------
+\& 1 16.50000000 0.50000000 2.50000000
+\& 2 6.16666667 2.50000000 4.50000000
+\& 3 4.10000000 4.50000000 6.50000000
+.Ve
+.PP
+This could used, for example, to produce a light curve with values
+having units of counts/second instead of counts.
+.PP
+For an image histogram, the output displays the low and high image
+values (both inclusive) used to generate the histogram. For example,
+in the following example, 184 pixels had a value of 1, 31 had a value
+of 2, while only 2 had a value of 3,4,5,6, or 7:
+.PP
+.Vb 3
+\& [sh] funhist test.fits
+\& # data file: /home/eric/data/test.fits
+\& # min,max,bins: 1 7 7
+.Ve
+.PP
+.Vb 9
+\& bin value lo_val hi_val
+\& ------ --------------------- --------------------- ---------------------
+\& 1 184.00000000 1.00000000 1.00000000
+\& 2 31.00000000 2.00000000 2.00000000
+\& 3 2.00000000 3.00000000 3.00000000
+\& 4 2.00000000 4.00000000 4.00000000
+\& 5 2.00000000 5.00000000 5.00000000
+\& 6 2.00000000 6.00000000 6.00000000
+\& 7 2.00000000 7.00000000 7.00000000
+.Ve
+.PP
+For the axis projection of an image, the output displays the low and
+high image bins (both inclusive) used to generate the projection. For
+example, in the following example, 21 counts had their X bin value of
+2, etc.:
+.PP
+.Vb 4
+\& [sh] funhist test.fits x 2:7
+\& # data file: /home/eric/data/test.fits
+\& # column: X
+\& # min,max,bins: 2 7 6
+.Ve
+.PP
+.Vb 8
+\& bin value lo_bin hi_bin
+\& ------ --------------------- --------------------- ---------------------
+\& 1 21.00000000 2.00000000 2.00000000
+\& 2 20.00000000 3.00000000 3.00000000
+\& 3 19.00000000 4.00000000 4.00000000
+\& 4 18.00000000 5.00000000 5.00000000
+\& 5 17.00000000 6.00000000 6.00000000
+\& 6 16.00000000 7.00000000 7.00000000
+.Ve
+.PP
+.Vb 4
+\& [sh] funhist test.fits x 2:7:2
+\& # data file: /home/eric/data/test.fits
+\& # column: X
+\& # min,max,bins: 2 7 2
+.Ve
+.PP
+.Vb 4
+\& bin value lo_bin hi_bin
+\& ------ --------------------- --------------------- ---------------------
+\& 1 60.00000000 2.00000000 4.00000000
+\& 2 51.00000000 5.00000000 7.00000000
+.Ve
+.PP
+You can use gnuplot or other plotting programs to graph the
+results, using a script such as:
+.PP
+.Vb 7
+\& #!/bin/sh
+\& sed \-e '1,/---- .*/d
+\& /^$/,$d' | \e
+\& awk '\e
+\& BEGIN{print "set nokey; set title \e"funhist\e"; set xlabel \e"bin\e"; set ylabel \e"counts\e"; plot \e"-\e" with boxes"} \e
+\& {print $3, $2, $4-$3}' | \e
+\& gnuplot \-persist - 1>/dev/null 2>&1
+.Ve
+.PP
+Similar plot commands are supplied in the script \fBfunhist.plot\fR:
+.PP
+.Vb 1
+\& funhist test.ev pha ... | funhist.plot gnuplot
+.Ve
+.SH "SEE ALSO"
+.IX Header "SEE ALSO"
+See funtools(7) for a list of Funtools help pages