Merge remote-tracking branch 'origin/hdf5_1_12_1' into 1.12/master forhdf5-1_12_1

HDF5 1.12.1 release.

26 files changed, 369 insertions, 87 deletions

diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt
index 1707ae9..93ae9e8 100644
--- a/hl/examples/CMakeLists.txt
+++ b/hl/examples/CMakeLists.txt
@@ -28,7 +28,7 @@ set (examples
 
 foreach (example ${examples})
   add_executable (hl_ex_${example} ${HDF5_HL_EXAMPLES_SOURCE_DIR}/${example}.c)
-  target_include_directories (hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_include_directories (hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   if (NOT BUILD_SHARED_LIBS)
     TARGET_C_PROPERTIES (hl_ex_${example} STATIC)
     target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET})
@@ -37,6 +37,13 @@ foreach (example ${examples})
     target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   endif ()
   set_target_properties (hl_ex_${example} PROPERTIES FOLDER examples/hl)
+
+  #-----------------------------------------------------------------------------
+  # Add Target to clang-format
+  #-----------------------------------------------------------------------------
+  if (HDF5_ENABLE_FORMATTERS)
+    clang_format (HDF5_HL_EXAMPLES_${example}_FORMAT hl_ex_${example})
+  endif ()
 endforeach ()
 
 if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL)
diff --git a/hl/examples/CMakeTests.cmake b/hl/examples/CMakeTests.cmake
index d0f9018..b997096 100644
--- a/hl/examples/CMakeTests.cmake
+++ b/hl/examples/CMakeTests.cmake
@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am
index cc2d671..753dd6a 100644
--- a/hl/examples/Makefile.am
+++ b/hl/examples/Makefile.am
@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
@@ -25,8 +25,8 @@ endif
 
 # Example directory
 # Note: no '/' after DESTDIR.  Explanation in commence.am
-EXAMPLEDIR=$(examplesdir)/hl/c
-EXAMPLETOPDIR=$(examplesdir)/hl
+EXAMPLEDIR=${DESTDIR}$(examplesdir)/hl/c
+EXAMPLETOPDIR=${DESTDIR}$(examplesdir)/hl
 INSTALL_SCRIPT_FILES = run-hlc-ex.sh
 INSTALL_TOP_SCRIPT_FILES = run-hl-ex.sh
 
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 8c2f599..e527f1c 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -22,7 +22,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -117,6 +117,7 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
 	$(top_srcdir)/m4/ax_check_junit.m4 \
 	$(top_srcdir)/m4/ax_java_options.m4 \
 	$(top_srcdir)/m4/ax_jni_include_dir.m4 \
+	$(top_srcdir)/m4/ax_prog_doxygen.m4 \
 	$(top_srcdir)/m4/ax_prog_jar.m4 \
 	$(top_srcdir)/m4/ax_prog_java.m4 \
 	$(top_srcdir)/m4/ax_prog_java_works.m4 \
@@ -366,7 +367,7 @@ AMTAR = @AMTAR@
 
 # H5_CFLAGS holds flags that should be used when building hdf5,
 # but which should not be exported to h5cc for building other programs.
-# AM_CFLAGS is an automake construct which should be used by Makefiles 
+# AM_CFLAGS is an automake construct which should be used by Makefiles
 # instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
 # This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well.
 AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
@@ -391,6 +392,7 @@ CC = @CC@
 CCDEPMODE = @CCDEPMODE@
 CC_VERSION = @CC_VERSION@
 CFLAGS = @CFLAGS@
+CLANG_SANITIZE_CHECKS = @CLANG_SANITIZE_CHECKS@
 CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
@@ -407,11 +409,54 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
-DEV_WARNINGS = @DEV_WARNINGS@
+DESIRED_FILE_LOCKING = @DESIRED_FILE_LOCKING@
+DIAGS = @DIAGS@
 DIRECT_VFD = @DIRECT_VFD@
 DLLTOOL = @DLLTOOL@
+DOXYGEN_EXAMPLES_DIRECTORY = @DOXYGEN_EXAMPLES_DIRECTORY@
+DOXYGEN_EXTERNAL_SEARCH = @DOXYGEN_EXTERNAL_SEARCH@
+DOXYGEN_HTML_EXTRA_FILES = @DOXYGEN_HTML_EXTRA_FILES@
+DOXYGEN_HTML_EXTRA_STYLESHEET = @DOXYGEN_HTML_EXTRA_STYLESHEET@
+DOXYGEN_HTML_FOOTER = @DOXYGEN_HTML_FOOTER@
+DOXYGEN_HTML_HEADER = @DOXYGEN_HTML_HEADER@
+DOXYGEN_INCLUDE_ALIASES = @DOXYGEN_INCLUDE_ALIASES@
+DOXYGEN_INPUT_DIRECTORY = @DOXYGEN_INPUT_DIRECTORY@
+DOXYGEN_LAYOUT_FILE = @DOXYGEN_LAYOUT_FILE@
+DOXYGEN_MACRO_EXPANSION = @DOXYGEN_MACRO_EXPANSION@
+DOXYGEN_OPTIMIZE_OUTPUT_FOR_C = @DOXYGEN_OPTIMIZE_OUTPUT_FOR_C@
+DOXYGEN_OUTPUT_DIRECTORY = @DOXYGEN_OUTPUT_DIRECTORY@
+DOXYGEN_PACKAGE = @DOXYGEN_PACKAGE@
+DOXYGEN_PAPER_SIZE = @DOXYGEN_PAPER_SIZE@
+DOXYGEN_PROJECT_BRIEF = @DOXYGEN_PROJECT_BRIEF@
+DOXYGEN_PROJECT_LOGO = @DOXYGEN_PROJECT_LOGO@
+DOXYGEN_SEARCHENGINE_URL = @DOXYGEN_SEARCHENGINE_URL@
+DOXYGEN_SERVER_BASED_SEARCH = @DOXYGEN_SERVER_BASED_SEARCH@
+DOXYGEN_VERSION_STRING = @DOXYGEN_VERSION_STRING@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
+DX_CONFIG = @DX_CONFIG@
+DX_DOCDIR = @DX_DOCDIR@
+DX_DOT = @DX_DOT@
+DX_DOXYGEN = @DX_DOXYGEN@
+DX_DVIPS = @DX_DVIPS@
+DX_EGREP = @DX_EGREP@
+DX_ENV = @DX_ENV@
+DX_FLAG_chi = @DX_FLAG_chi@
+DX_FLAG_chm = @DX_FLAG_chm@
+DX_FLAG_doc = @DX_FLAG_doc@
+DX_FLAG_dot = @DX_FLAG_dot@
+DX_FLAG_html = @DX_FLAG_html@
+DX_FLAG_man = @DX_FLAG_man@
+DX_FLAG_pdf = @DX_FLAG_pdf@
+DX_FLAG_ps = @DX_FLAG_ps@
+DX_FLAG_rtf = @DX_FLAG_rtf@
+DX_FLAG_xml = @DX_FLAG_xml@
+DX_HHC = @DX_HHC@
+DX_LATEX = @DX_LATEX@
+DX_MAKEINDEX = @DX_MAKEINDEX@
+DX_PDFLATEX = @DX_PDFLATEX@
+DX_PERL = @DX_PERL@
+DX_PROJECT = @DX_PROJECT@
 ECHO_C = @ECHO_C@
 ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
@@ -445,6 +490,7 @@ H5_CPPFLAGS = @H5_CPPFLAGS@
 H5_CXXFLAGS = @H5_CXXFLAGS@
 H5_FCFLAGS = @H5_FCFLAGS@
 H5_FORTRAN_SHARED = @H5_FORTRAN_SHARED@
+H5_IS_DARWIN = @H5_IS_DARWIN@
 H5_JAVACFLAGS = @H5_JAVACFLAGS@
 H5_JAVAFLAGS = @H5_JAVAFLAGS@
 H5_JNIFLAGS = @H5_JNIFLAGS@
@@ -455,6 +501,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
 HAVE_Fortran_INTEGER_SIZEOF_16 = @HAVE_Fortran_INTEGER_SIZEOF_16@
 HAVE_LIBHDFS = @HAVE_LIBHDFS@
 HAVE_PTHREAD = @HAVE_PTHREAD@
+HDF5_DOXYGEN = @HDF5_DOXYGEN@
 HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
 HDF5_TESTS = @HDF5_TESTS@
@@ -467,6 +514,7 @@ HL = @HL@
 HL_FOR = @HL_FOR@
 HSIZE_T = @HSIZE_T@
 HSSIZE_T = @HSSIZE_T@
+IGNORE_DISABLED_FILE_LOCKS = @IGNORE_DISABLED_FILE_LOCKS@
 INSTALL = @INSTALL@
 INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
@@ -504,6 +552,7 @@ MAKEINFO = @MAKEINFO@
 MANIFEST_TOOL = @MANIFEST_TOOL@
 MAP_API = @MAP_API@
 MEMORYALLOCSANITYCHECK = @MEMORYALLOCSANITYCHECK@
+MIRROR_VFD = @MIRROR_VFD@
 MKDIR_P = @MKDIR_P@
 MPE = @MPE@
 NM = @NM@
@@ -540,6 +589,7 @@ PATH_SEPARATOR = @PATH_SEPARATOR@
 PREADWRITE = @PREADWRITE@
 PROFILING = @PROFILING@
 RANLIB = @RANLIB@
+RECURSIVE_RW_LOCKS = @RECURSIVE_RW_LOCKS@
 ROOT = @ROOT@
 ROS3_VFD = @ROS3_VFD@
 RUNPARALLEL = @RUNPARALLEL@
@@ -563,6 +613,7 @@ TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
 UNAME_INFO = @UNAME_INFO@
+USE_FILE_LOCKING = @USE_FILE_LOCKING@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_SZIP = @USE_FILTER_SZIP@
 USINGMEMCHECKER = @USINGMEMCHECKER@
@@ -655,15 +706,15 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
-# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
-# has been removed. According to the official description of DESTDIR by Gnu at 
-# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
-# prepended to the normal and complete install path that it precedes for the 
-# purpose of installing in a temporary directory which is useful for building 
-# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
-# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
-# path then begins with '//', which is incorrect and causes problems at least for 
-# Cygwin.   
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below
+# has been removed. According to the official description of DESTDIR by Gnu at
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
+# prepended to the normal and complete install path that it precedes for the
+# purpose of installing in a temporary directory which is useful for building
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the
+# path then begins with '//', which is incorrect and causes problems at least for
+# Cygwin.
 
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
@@ -687,8 +738,8 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5
 
 # Example directory
 # Note: no '/' after DESTDIR.  Explanation in commence.am
-EXAMPLEDIR = $(examplesdir)/hl/c
-EXAMPLETOPDIR = $(examplesdir)/hl
+EXAMPLEDIR = ${DESTDIR}$(examplesdir)/hl/c
+EXAMPLETOPDIR = ${DESTDIR}$(examplesdir)/hl
 INSTALL_SCRIPT_FILES = run-hlc-ex.sh
 INSTALL_TOP_SCRIPT_FILES = run-hl-ex.sh
 
@@ -735,7 +786,7 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
-chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST)
 TEST_EXTENSIONS = .sh
 SH_LOG_COMPILER = $(SHELL)
 AM_SH_LOG_FLAGS = 
@@ -1099,9 +1150,9 @@ uninstall-am: uninstall-local
 # commands that should be executed even if a file with the same name already
 # exists.
 .PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
-        build-tests check-clean check-install check-p check-s check-vfd \
-        check-passthrough-vol install-doc lib progs tests uninstall-doc \
-        _exec_check-s _test help
+	build-tests check-clean check-install check-p check-s check-vfd \
+	check-passthrough-vol install-doc lib progs tests uninstall-doc \
+	_exec_check-s _test help trace doxygen
 
 help:
 	@$(top_srcdir)/bin/makehelp
@@ -1153,7 +1204,7 @@ install-data-local:
 uninstall-local:
 	@$(MAKE) $(AM_MAKEFLAGS) uninstall-examples
 
-install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) 
+install-examples: $(EXAMPLEDIR) $(INSTALL_FILES)
 	@for f in X $(INSTALL_FILES); do                                     \
 	  if test $$f != X; then                                             \
 	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);    \
@@ -1200,7 +1251,7 @@ installcheck-local:
 	  H5CCFLAGS="-shlib" $(MAKE) $(AM_MAKEFLAGS) check;                \
 	else                                                              \
 	  $(MAKE) $(AM_MAKEFLAGS) check;                                   \
-	fi 
+	fi
 	@if test "$(INSTALL_FILES)" -a $(TEST_EXAMPLES_SCRIPT) -a -d $(EXAMPLEDIR); then \
 	    echo "============================";                                         \
 	    echo "Testing $(TEST_EXAMPLES_SCRIPT)";                                      \
diff --git a/hl/examples/ex_ds1.c b/hl/examples/ex_ds1.c
index af8b581..d6890fa 100644
--- a/hl/examples/ex_ds1.c
+++ b/hl/examples/ex_ds1.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -91,9 +91,11 @@ main(void)
     if (H5DSattach_scale(did, dsid, DIM1) < 0)
         goto out;
 
-    /* close DS id */
+    /* close DS ids */
     if (H5Dclose(dsid) < 0)
         goto out;
+    if (H5Dclose(did) < 0)
+        goto out;
 
     /* close file */
     H5Fclose(fid);
diff --git a/hl/examples/ex_image1.c b/hl/examples/ex_image1.c
index ef9410b..ead1715 100644
--- a/hl/examples/ex_image1.c
+++ b/hl/examples/ex_image1.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_image2.c b/hl/examples/ex_image2.c
index 2a38430..be9fc4b 100644
--- a/hl/examples/ex_image2.c
+++ b/hl/examples/ex_image2.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_lite1.c b/hl/examples/ex_lite1.c
index 3056480..b28be70 100644
--- a/hl/examples/ex_lite1.c
+++ b/hl/examples/ex_lite1.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_lite2.c b/hl/examples/ex_lite2.c
index 4441844..a0c2a65 100644
--- a/hl/examples/ex_lite2.c
+++ b/hl/examples/ex_lite2.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_lite3.c b/hl/examples/ex_lite3.c
index f80582e..43291b7 100644
--- a/hl/examples/ex_lite3.c
+++ b/hl/examples/ex_lite3.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_01.c b/hl/examples/ex_table_01.c
index f3f1b0d..8635acf 100644
--- a/hl/examples/ex_table_01.c
+++ b/hl/examples/ex_table_01.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_02.c b/hl/examples/ex_table_02.c
index 2c2f56b..9c476b3 100644
--- a/hl/examples/ex_table_02.c
+++ b/hl/examples/ex_table_02.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_03.c b/hl/examples/ex_table_03.c
index 8787275..31cf970 100644
--- a/hl/examples/ex_table_03.c
+++ b/hl/examples/ex_table_03.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_04.c b/hl/examples/ex_table_04.c
index 9cb9137..863fe15 100644
--- a/hl/examples/ex_table_04.c
+++ b/hl/examples/ex_table_04.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_05.c b/hl/examples/ex_table_05.c
index ab1b77f..337bfb6 100644
--- a/hl/examples/ex_table_05.c
+++ b/hl/examples/ex_table_05.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_06.c b/hl/examples/ex_table_06.c
index 2784430..f6b67c8 100644
--- a/hl/examples/ex_table_06.c
+++ b/hl/examples/ex_table_06.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_07.c b/hl/examples/ex_table_07.c
index b12cc27..ab36613 100644
--- a/hl/examples/ex_table_07.c
+++ b/hl/examples/ex_table_07.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_08.c b/hl/examples/ex_table_08.c
index 4210460..5d447dd 100644
--- a/hl/examples/ex_table_08.c
+++ b/hl/examples/ex_table_08.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_09.c b/hl/examples/ex_table_09.c
index 5374aff..381925f 100644
--- a/hl/examples/ex_table_09.c
+++ b/hl/examples/ex_table_09.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_10.c b/hl/examples/ex_table_10.c
index 754974a..4ba5d64 100644
--- a/hl/examples/ex_table_10.c
+++ b/hl/examples/ex_table_10.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_11.c b/hl/examples/ex_table_11.c
index 4f666b9..9bf3927 100644
--- a/hl/examples/ex_table_11.c
+++ b/hl/examples/ex_table_11.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/ex_table_12.c b/hl/examples/ex_table_12.c
index c13401f..3e7c27a 100644
--- a/hl/examples/ex_table_12.c
+++ b/hl/examples/ex_table_12.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/pal_rgb.h b/hl/examples/pal_rgb.h
index a032a77..a2b17e2 100644
--- a/hl/examples/pal_rgb.h
+++ b/hl/examples/pal_rgb.h
@@ -6,46 +6,268 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
-const unsigned char pal_rgb[256 * 3] = {
-    255, 255, 255, 0,   0,   131, 0,   0,   135, 0,   0,   139, 0,   0,   143, 0,   0,   147, 0,   0,   151,
-    0,   0,   155, 0,   0,   159, 0,   0,   163, 0,   0,   167, 0,   0,   171, 0,   0,   175, 0,   0,   179,
-    0,   0,   183, 0,   0,   187, 0,   0,   191, 0,   0,   195, 0,   0,   199, 0,   0,   203, 0,   0,   207,
-    0,   0,   211, 0,   0,   215, 0,   0,   219, 0,   0,   223, 0,   0,   227, 0,   0,   231, 0,   0,   235,
-    0,   0,   239, 0,   0,   243, 0,   0,   247, 0,   0,   251, 0,   0,   255, 0,   0,   255, 0,   3,   255,
-    0,   7,   255, 0,   11,  255, 0,   15,  255, 0,   19,  255, 0,   23,  255, 0,   27,  255, 0,   31,  255,
-    0,   35,  255, 0,   39,  255, 0,   43,  255, 0,   47,  255, 0,   51,  255, 0,   55,  255, 0,   59,  255,
-    0,   63,  255, 0,   67,  255, 0,   71,  255, 0,   75,  255, 0,   79,  255, 0,   83,  255, 0,   87,  255,
-    0,   91,  255, 0,   95,  255, 0,   99,  255, 0,   103, 255, 0,   107, 255, 0,   111, 255, 0,   115, 255,
-    0,   119, 255, 0,   123, 255, 0,   127, 255, 0,   131, 255, 0,   135, 255, 0,   139, 255, 0,   143, 255,
-    0,   147, 255, 0,   151, 255, 0,   155, 255, 0,   159, 255, 0,   163, 255, 0,   167, 255, 0,   171, 255,
-    0,   175, 255, 0,   179, 255, 0,   183, 255, 0,   187, 255, 0,   191, 255, 0,   195, 255, 0,   199, 255,
-    0,   203, 255, 0,   207, 255, 0,   211, 255, 0,   215, 255, 0,   219, 255, 0,   223, 255, 0,   227, 255,
-    0,   231, 255, 0,   235, 255, 0,   239, 255, 0,   243, 255, 0,   247, 255, 0,   251, 255, 0,   255, 255,
-    0,   255, 255, 3,   255, 251, 7,   255, 247, 11,  255, 243, 15,  255, 239, 19,  255, 235, 23,  255, 231,
-    27,  255, 227, 31,  255, 223, 35,  255, 219, 39,  255, 215, 43,  255, 211, 47,  255, 207, 51,  255, 203,
-    55,  255, 199, 59,  255, 195, 63,  255, 191, 67,  255, 187, 71,  255, 183, 75,  255, 179, 79,  255, 175,
-    83,  255, 171, 87,  255, 167, 91,  255, 163, 95,  255, 159, 99,  255, 155, 103, 255, 151, 107, 255, 147,
-    111, 255, 143, 115, 255, 139, 119, 255, 135, 123, 255, 131, 127, 255, 127, 131, 255, 123, 135, 255, 119,
-    139, 255, 115, 143, 255, 111, 147, 255, 107, 151, 255, 103, 155, 255, 99,  159, 255, 95,  163, 255, 91,
-    167, 255, 87,  171, 255, 83,  175, 255, 79,  179, 255, 75,  183, 255, 71,  187, 255, 67,  191, 255, 63,
-    195, 255, 59,  199, 255, 55,  203, 255, 51,  207, 255, 47,  211, 255, 43,  215, 255, 39,  219, 255, 35,
-    223, 255, 31,  227, 255, 27,  231, 255, 23,  235, 255, 19,  239, 255, 15,  243, 255, 11,  247, 255, 7,
-    251, 255, 3,   255, 255, 0,   255, 251, 0,   255, 247, 0,   255, 243, 0,   255, 239, 0,   255, 235, 0,
-    255, 231, 0,   255, 227, 0,   255, 223, 0,   255, 219, 0,   255, 215, 0,   255, 211, 0,   255, 207, 0,
-    255, 203, 0,   255, 199, 0,   255, 195, 0,   255, 191, 0,   255, 187, 0,   255, 183, 0,   255, 179, 0,
-    255, 175, 0,   255, 171, 0,   255, 167, 0,   255, 163, 0,   255, 159, 0,   255, 155, 0,   255, 151, 0,
-    255, 147, 0,   255, 143, 0,   255, 139, 0,   255, 135, 0,   255, 131, 0,   255, 127, 0,   255, 123, 0,
-    255, 119, 0,   255, 115, 0,   255, 111, 0,   255, 107, 0,   255, 103, 0,   255, 99,  0,   255, 95,  0,
-    255, 91,  0,   255, 87,  0,   255, 83,  0,   255, 79,  0,   255, 75,  0,   255, 71,  0,   255, 67,  0,
-    255, 63,  0,   255, 59,  0,   255, 55,  0,   255, 51,  0,   255, 47,  0,   255, 43,  0,   255, 39,  0,
-    255, 35,  0,   255, 31,  0,   255, 27,  0,   255, 23,  0,   255, 19,  0,   255, 15,  0,   255, 11,  0,
-    255, 7,   0,   255, 3,   0,   255, 0,   0,   250, 0,   0,   246, 0,   0,   241, 0,   0,   237, 0,   0,
-    233, 0,   0,   228, 0,   0,   224, 0,   0,   219, 0,   0,   215, 0,   0,   211, 0,   0,   206, 0,   0,
-    202, 0,   0,   197, 0,   0,   193, 0,   0,   189, 0,   0,   184, 0,   0,   180, 0,   0,   175, 0,   0,
-    171, 0,   0,   167, 0,   0,   162, 0,   0,   158, 0,   0,   153, 0,   0,   149, 0,   0,   145, 0,   0,
-    140, 0,   0,   136, 0,   0,   131, 0,   0,   127, 0,   0};
+/* clang-format off */
+const unsigned char pal_rgb[256*3] = {
+        255,255,255,
+        0,0,131,
+        0,0,135,
+        0,0,139,
+        0,0,143,
+        0,0,147,
+        0,0,151,
+        0,0,155,
+        0,0,159,
+        0,0,163,
+        0,0,167,
+        0,0,171,
+        0,0,175,
+        0,0,179,
+        0,0,183,
+        0,0,187,
+        0,0,191,
+        0,0,195,
+        0,0,199,
+        0,0,203,
+        0,0,207,
+        0,0,211,
+        0,0,215,
+        0,0,219,
+        0,0,223,
+        0,0,227,
+        0,0,231,
+        0,0,235,
+        0,0,239,
+        0,0,243,
+        0,0,247,
+        0,0,251,
+        0,0,255,
+        0,0,255,
+        0,3,255,
+        0,7,255,
+        0,11,255,
+        0,15,255,
+        0,19,255,
+        0,23,255,
+        0,27,255,
+        0,31,255,
+        0,35,255,
+        0,39,255,
+        0,43,255,
+        0,47,255,
+        0,51,255,
+        0,55,255,
+        0,59,255,
+        0,63,255,
+        0,67,255,
+        0,71,255,
+        0,75,255,
+        0,79,255,
+        0,83,255,
+        0,87,255,
+        0,91,255,
+        0,95,255,
+        0,99,255,
+        0,103,255,
+        0,107,255,
+        0,111,255,
+        0,115,255,
+        0,119,255,
+        0,123,255,
+        0,127,255,
+        0,131,255,
+        0,135,255,
+        0,139,255,
+        0,143,255,
+        0,147,255,
+        0,151,255,
+        0,155,255,
+        0,159,255,
+        0,163,255,
+        0,167,255,
+        0,171,255,
+        0,175,255,
+        0,179,255,
+        0,183,255,
+        0,187,255,
+        0,191,255,
+        0,195,255,
+        0,199,255,
+        0,203,255,
+        0,207,255,
+        0,211,255,
+        0,215,255,
+        0,219,255,
+        0,223,255,
+        0,227,255,
+        0,231,255,
+        0,235,255,
+        0,239,255,
+        0,243,255,
+        0,247,255,
+        0,251,255,
+        0,255,255,
+        0,255,255,
+        3,255,251,
+        7,255,247,
+        11,255,243,
+        15,255,239,
+        19,255,235,
+        23,255,231,
+        27,255,227,
+        31,255,223,
+        35,255,219,
+        39,255,215,
+        43,255,211,
+        47,255,207,
+        51,255,203,
+        55,255,199,
+        59,255,195,
+        63,255,191,
+        67,255,187,
+        71,255,183,
+        75,255,179,
+        79,255,175,
+        83,255,171,
+        87,255,167,
+        91,255,163,
+        95,255,159,
+        99,255,155,
+        103,255,151,
+        107,255,147,
+        111,255,143,
+        115,255,139,
+        119,255,135,
+        123,255,131,
+        127,255,127,
+        131,255,123,
+        135,255,119,
+        139,255,115,
+        143,255,111,
+        147,255,107,
+        151,255,103,
+        155,255,99,
+        159,255,95,
+        163,255,91,
+        167,255,87,
+        171,255,83,
+        175,255,79,
+        179,255,75,
+        183,255,71,
+        187,255,67,
+        191,255,63,
+        195,255,59,
+        199,255,55,
+        203,255,51,
+        207,255,47,
+        211,255,43,
+        215,255,39,
+        219,255,35,
+        223,255,31,
+        227,255,27,
+        231,255,23,
+        235,255,19,
+        239,255,15,
+        243,255,11,
+        247,255,7,
+        251,255,3,
+        255,255,0,
+        255,251,0,
+        255,247,0,
+        255,243,0,
+        255,239,0,
+        255,235,0,
+        255,231,0,
+        255,227,0,
+        255,223,0,
+        255,219,0,
+        255,215,0,
+        255,211,0,
+        255,207,0,
+        255,203,0,
+        255,199,0,
+        255,195,0,
+        255,191,0,
+        255,187,0,
+        255,183,0,
+        255,179,0,
+        255,175,0,
+        255,171,0,
+        255,167,0,
+        255,163,0,
+        255,159,0,
+        255,155,0,
+        255,151,0,
+        255,147,0,
+        255,143,0,
+        255,139,0,
+        255,135,0,
+        255,131,0,
+        255,127,0,
+        255,123,0,
+        255,119,0,
+        255,115,0,
+        255,111,0,
+        255,107,0,
+        255,103,0,
+        255,99,0,
+        255,95,0,
+        255,91,0,
+        255,87,0,
+        255,83,0,
+        255,79,0,
+        255,75,0,
+        255,71,0,
+        255,67,0,
+        255,63,0,
+        255,59,0,
+        255,55,0,
+        255,51,0,
+        255,47,0,
+        255,43,0,
+        255,39,0,
+        255,35,0,
+        255,31,0,
+        255,27,0,
+        255,23,0,
+        255,19,0,
+        255,15,0,
+        255,11,0,
+        255,7,0,
+        255,3,0,
+        255,0,0,
+        250,0,0,
+        246,0,0,
+        241,0,0,
+        237,0,0,
+        233,0,0,
+        228,0,0,
+        224,0,0,
+        219,0,0,
+        215,0,0,
+        211,0,0,
+        206,0,0,
+        202,0,0,
+        197,0,0,
+        193,0,0,
+        189,0,0,
+        184,0,0,
+        180,0,0,
+        175,0,0,
+        171,0,0,
+        167,0,0,
+        162,0,0,
+        158,0,0,
+        153,0,0,
+        149,0,0,
+        145,0,0,
+        140,0,0,
+        136,0,0,
+        131,0,0,
+        127,0,0
+};
+/* clang-format on */
diff --git a/hl/examples/ptExampleFL.c b/hl/examples/ptExampleFL.c
index 66f2040..88ba8e5 100644
--- a/hl/examples/ptExampleFL.c
+++ b/hl/examples/ptExampleFL.c
@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
diff --git a/hl/examples/run-hl-ex.sh b/hl/examples/run-hl-ex.sh
index 6f736cc..c31e0d4 100755
--- a/hl/examples/run-hl-ex.sh
+++ b/hl/examples/run-hl-ex.sh
@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 
diff --git a/hl/examples/run-hlc-ex.sh.in b/hl/examples/run-hlc-ex.sh.in
index e6d0cc9..81d3c00 100644
--- a/hl/examples/run-hlc-ex.sh.in
+++ b/hl/examples/run-hlc-ex.sh.in
@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 
@@ -138,5 +138,5 @@ rm *.o
 rm *.h5
 echo
 
-exit $EXIT_VALUE 
+exit $EXIT_VALUE