1.8/master (#317)hdf5-1_8_22

* Revert incorrect bool type

* Correct grep text for filter test

* Check sizeof type to use correct ref_type

* h5dump reg ref chnages has no error file

* Fix comment

* Remove unneeded files

* Verify the decoded version for "all" and "none" selection.

* Remove double entry

* Add missing include

* Snapshot version 1.8 release 22 (snap4)
Update version to 1.8-snap5

* Fixes for test failures with --disable-tests --disable-tools options.
Don't test ph5diff if tests are disabled.

* Correct conditions for parallel builds with and without tests.

* Snapshot version 1.8 release 22 (snap5)
Update version to 1.8.22-snap6

* TRILAB-192 merging warnings changes from develop

* Autotools reconfigure update

* Restore page ejects.

* Restore page eject chars

* Fix orphaned token

* Update LT files

* Correct extra flags and merge TRILAB-24

* Update release note for CMake warnings

* H5repack bug fixes from develop

* TRILAB-192 - merge changes from develop

Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.

* Add missing m4 file

* Remove 128bit config check fo 1.8

* TRILAB-192 update LTparse files

* A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails.
The code to fix the problem is the same as what is done in H5D__open_oid().

* Add missing " and update function calls incorrectly
named load_gcc_arguments.
Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags
to not add C warnings flags to H5_FCFLAGS.

* TRILAB-192 - cleanup edits and match CMake CXX to autotools

* Fix shadowed type

* TRILAB-192 correct fortran commands

* TRILAB-192 version of std=f2008 special check

* Fix shadow variable

* Add prefix_relto_examplesdir function to set relative path to h5c++.

* TRILAB-192 - parser files cannot handle this warning

* Parallel Fortran tests now use the MPI module instead of including
mpif.h.

* Don't add general warnings flags for unsupported old versions of gcc and
g++ (older than gcc/g++ 4.2).
Correct gnu-cxxflags to determine warnings flags to be added based on
C++ compiler version instead of C compiler version.

* Snapshot version 1.8 release 22 (snap6)
Update version to 1.8.22-snap7

* TRILAB-244 separate CXX warnings and errors from C

* Fix NoFilter build

* Move ADD_H5_FLAGS macro from *CompilerFlags.cmake files to
config/cmake_ext_mod/HDFMacros.cmake for common use.

* Restrict errors to gcc 4.8 and above.

* OESS-65 replace szip with aec szip

* Correct CMake version

* Correct -Werror=unused-variable

* Add -Werror= flags to lists displayed in libhdf5.settings.

* Fix -Werror=unused-variable

* More fixes for unused variable

* Resolve warning errors from -Werror= flags:
  -Werror=bad-function-cast
  -Werror=bad-function-cast
  -Werror=implicit-function-declaration
  -Werror=nested-externs

* Remove verbose assignments in smoke_check 3 and 5 functions.

* Update to use optimization flags, C++ error flags, and correct
libhdf5.settings.in to remove unworkable changes.

* Update config/gnu-cxxflags.

* Add missing headers

* Fix ifort warning flag.
Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4.
Add --enable-symbols, --enable-profiling, and --enable-optimization
options to autotools configure;  all configure flags for
--enable-production and --disable-production should match HDF5 1.10 and
1.12 production and debug default flags.

* Add github actions file

* Correct path

* OESS-65 Fix packaging

* Update reference name

* Correct filename

* disable pr action and enable fail fast

* Snapshot 1.8.22-snap7
Update version to 1.8.22-snap8.

* Correct mingw path

* Correct mingw paths

* Revise gnu-*flags and cmake/HDF*CompilerFlags.cmake files to add warning
flags for GCC compilers version 4.8 and above.
Removed files from gnu-warnings that only apply to versions < 4.8.
Consolidated warnings from versions < 4.8 that apply to versions >= 4.8
into the 4.8 warnings files.

* Update MANIFEST for removal of older warnings files.

* Yanked all MPI-1 calls
Added batch scripts in bin/batch.

* Snapshot 1.8.22-snap8.
Update version to 1.8.22-snap9.

* Squashed commit of the following:

commit 45b0cbc71929930a874e1c09e0770aa64d0ae697
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Apr 23 13:14:56 2020 -0500

    Add C++ warnings treated as error for autotools builds.

commit 6debcddcc766601799d5bd661bd60946f951a07e
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Fri Jun 19 16:50:03 2020 -0500

    Remove tests for develop branch from testh5cc.sh.in.
    Add @H5_ECXXFLAGS@ to AM_CXXFLAGS.

commit fed497e7f207313b2a133d3b68c942b7d7104b90
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Fri Jun 12 15:06:39 2020 -0500

    Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

    * commit '998c6470d78e14228695419c3b514c35ecf3d69e':
      Remove unnecessary version conditions for Clang compilers.

commit 92e52ce5c211bd1d3991a3b8bb67287ac7b652aa
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Wed Jun 10 18:53:45 2020 -0500

    Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

    * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6':
      Add c++ to --enable-sanitize-checks option.

commit 2e802534fb997b81fa98fdd1c7d97d4310898e0d
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Wed Jun 10 15:18:36 2020 -0500

    Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

    * commit '20eab963899841c9a003baebead8e3bc07d9e127':
      Remove duplicate entries in MANIFEST.
      Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers.
      Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang.

commit 96ef60a58a23847a7da89a891f2415055ec2ab60
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Mon Jun 8 16:24:49 2020 -0500

    Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

    * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8':
      Clean up code to get clang version in config/linux-gnulibc1

commit 8a7c687da568e8b50b38fa53da1ca63759be6ec4
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Mon Jun 8 11:42:37 2020 -0500

    Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

    * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab':
      Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
      Add files for adding warning flags for clang compilers in autotools configure.

commit db3ef7ff3c1ed79167cecef831501411cff8291f
Merge: 5a0f8d7 f9f1310
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Fri Jun 19 14:46:22 2020 -0500

    Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_12

commit 5a0f8d7940ae57b445f545a0abd7e303ce6924ee
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Wed Jun 10 20:15:41 2020 -0500

    Merge pull request #2636 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop

    * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e':
      Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags.
      HDFFV-11000:  update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.

* Update configure and Makefile.ins after bin/reconfigure.

* Fix MANIFEST

* Fix HDFFV-10591

Description:
    h52gif produced a segfault when a buffer overflow occurred because
    the data size was corrupted and became very large.  This commit added
    a check on the data size against the buffer size to prevent the segfault.
    It also added error reporting to h52gif to display an error message
    instead of silently exiting when the failure occurred.
Platforms tested:
    Linux/64 (jelly)

* Snapshot 1.8.22-snap9. Update version to 1.8.22-snap10.

* Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop

* commit '800f93f7c994f88dfa716746153ded4b1e690e3a':
  Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.

* Regenerate configure.

* Merge from 1.10-1.12-dev - LT parse needs update

* Incorporate pull request #2693 from develop for the fix to HDFFV-11080:
(1) Patch up the file pointer when reading attribute of variable length datatype
(2) Test to verify the fix when doing multiple threads
(3) Update MANIFEST
(4) Add new test to Cmake

* Switch bison and flex update of LT files from bin/genltanalyse to
bin/genparser, and from automatically updating the LT files whenever
reconfigure is run to running only on man<F12>ual command.

* Update hl/sr/H5LT files.
Add bin/genparser to MANIFEST; remove bin/genltanalyze.

* Fix to the merge of PR #2708 for HDFFV-11080 to the 1.8 branch.
Need to checkin test/Makefile.in for the new file added.

* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)

Description:
    When a buffer overflow occurred because a name length was corrupted
    and became very large, h5dump produced a segfault on one file and a
    memcpy parameter overlap on another file.  This commit added checks
    that detect a read pass the end of the buffer to prevent these error
    conditions.
Platforms tested:
    Linux/64 (jelly)

* Fixed typo

* Check for header szlib.h only when libsz passes AC_CHECK_LIB, so that
H5_HAVE_SALIB_H is not defined when szip is not enabled, to prevent
compile failures for incompatible szlib.

* HDFFV-11127 - force RTLD_LOCAL in dlopen

* spelling

* Remove extra parens

* Remove unnecessary assignment freom configure.ac.

* Add hypen to subrelease regex

* Add special case when H5_VERS_SUBRELEASE is 0

* Revert H5_VERS_SUBRELEASE check

* The version string has a second use for packaging

* MinGW uses "MinGW Makefiles"

* Snapshot 1.8.22-snap10. Update version to 1.8.22-snap11.

* Merge clang-format changes from develop

* remove stray file

* Source formatted

* Add options to github actions.

* Add back file, remove py file

* HDFFV-11096 Correct h5dump usage text

* Update formating

* remove autogen for 1.8 branch

* Fix comment whitespace

* Change '==' to 'eq' in test script

* Merge from develop

github updates
bin scripts
parser updates

* Snapshot 1.8.22-snap11. Update version to 1.8.22-snap12.

* Merge from 1.10

Comments, whitespace
Simple init and if block brackets.
Minimal code changes limited to return value and spelling

* Update autotools files

* Update FD source

* More merges from 1.10 comments and inits

* Comment fixes

* Fix macro argument

* Remove autogen file and cache dir

* Revert autotools files to previous version

* Correct boolean value and missing define

* URL and options corrections

* revert autoconf files

* Fix compile issues with vfd drivers.

* Fix HDFS test

* Remove extra #endif

* Move init above execution

* Multiple changes to bring branch up-to-date (#87)

Correct TARGET variable and CMake config file location.
Add option to allow filter plugins to be built inline.
Update CMake tools macros.

* hdf5 1 8 release text (#113)

* Multiple changes to bring branch up-to-date

Correct TARGET variable and CMake config file location.
Add option to allow filter plugins to be built inline.
Update CMake tools macros.

* release text updates - mostly whitespace

* Fixed HDFFV-10480 and HDFFV-11159 (#145)

* Fixed HDFFV-10480 and HDFFV-11159

Description
    Checked against buffer size to prevent segfault, in case of data corruption.

    + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode
    + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and
        A user's patch was applied to this previously, but it is redone
        for a more correct fix, that is the check now accounted for the
        previous advance of the buffer pointer.

Platforms tested:
    Linux/64 (jelly)

* Fixed typo

* Update HDF5 1.8 copyright headers with updated copyright URL (#148)

* Update URL for COPYING file in copyright headers.

* Make fortran copyright headers uniformly spaced.

* Update url for Copyright file in c++/src/footer.html.

* OESS-98 Update plugin build option (#171)

* 1.8 has extra fortran CMake option (#176)

* 1.8 has extra fortran CMake option

* Update license URL

* OESS-98 fix tools test for plugins (#180)

* Hdf5 1 8 (#169)

* Fixed HDFFV-10480 and HDFFV-11159

Description
    Checked against buffer size to prevent segfault, in case of data corruption.

    + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode
    + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and
        A user's patch was applied to this previously, but it is redone
        for a more correct fix, that is the check now accounted for the
        previous advance of the buffer pointer.

Platforms tested:
    Linux/64 (jelly)

* Fixed typo

* Fixed HDFFV-11150

Description
    Replaced an HDassert with a check for null pointer in H5O_dec_rc() to
    catch null pointer in corrupted data situation.
    Reversed the fix in svn-r24463 in which a check for null pointer prior
    to calling H5O_dec_rc()
Platforms tested:
    Linux/64 (jelly)

* HDF5 1 8 fix fortran build on macs (#186)

* Correct fortran and shared libs option

* Fix for no shared fortran build

* OESS-98 fix hdf5 link target (#191)

* Partial changes to RELEASE.txt for release. (#185)

* Partial changes to RELEASE.txt for release.

* Update supported and tested platforms.

* Update version to 1.8.22-12.

* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Update directory for SZ filter in HDF5PluginMacros.cmake.
Updates for release:
    Switch configure default to production mode.
    Set HDF5_GENERATE_HEADERS to OFF.

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Restores maintainer mode in the autotools (#200) (#203)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>

* Hdf5 1 8 22 (#212)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Brings ttsafe_attr_vlen.c changes from develop (#214)

Fixes exposed pthread problem on Windows.

* Update SO numbers for Hdf5 1 8 22 (#215)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Hdf5 1 8 22 (#224)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>

* Update CMake/HDF5Examples version in bin/release

* Update CMake/HDF5Examples version number in bin/release (#225)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>

* Fixed typo in an error message. (#228)

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* Bring 3 small changes from Hdf5 1.8 to 1.8.22 (#241)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Stat st blocks fix 1822 (#251)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* Fixes Autotools detection of the st_blocks field in stat (#246)

* Fixes Autotools detection of the st_blocks field in stat

The Autotools and CMake will now both correctly determine if the
stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS
appropriately.

* Fixes a typo in configure.ac

* Restore lines in RELEASE.txt.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Stat st blocks fix 1822 (#256)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* Fixes Autotools detection of the st_blocks field in stat (#246)

* Fixes Autotools detection of the st_blocks field in stat

The Autotools and CMake will now both correctly determine if the
stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS
appropriately.

* Fixes a typo in configure.ac

* Restore lines in RELEASE.txt.

* Updated configure with reconfigure.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* RELEASE.txt cleanup.

* Hdf5 1 8 22 (#261)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

* Hdf5 1 8 22 (#266)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Reverts lock/unlock callback signature to 1.8.21 version (#254)

* Reverts lock/unlock callback signature to 1.8.21 version

This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs
that have the lock callback implemented and that is just as no-op stubs.
These stubs were removed so the callbacks are now NULL pointers, like
the other VFDs in 1.8.

* Trivial whitespace fix

* Update version to 1.8.22-14.

* Hdf5 1 8 22 - Reverts lock/unlock callback signature to 1.8.21 version (#267)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

* Reverts lock/unlock callback signature to 1.8.21 version (#254)

* Reverts lock/unlock callback signature to 1.8.21 version

This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs
that have the lock callback implemented and that is just as no-op stubs.
These stubs were removed so the callbacks are now NULL pointers, like
the other VFDs in 1.8.

* Trivial whitespace fix

* Update version to 1.8.22-14.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Update version in H5public.h

* Hdf5 1 8 22 (#269)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

* Reverts lock/unlock callback signature to 1.8.21 version (#254)

* Reverts lock/unlock callback signature to 1.8.21 version

This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs
that have the lock callback implemented and that is just as no-op stubs.
These stubs were removed so the callbacks are now NULL pointers, like
the other VFDs in 1.8.

* Trivial whitespace fix

* Update version to 1.8.22-14.

* Update version in H5public.h

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Set version 1.8.22 for release.

* dd RELEASE.txt entry for HDFFV-10741.

* Hdf5 1 8 22 (#279)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

* Reverts lock/unlock callback signature to 1.8.21 version (#254)

* Reverts lock/unlock callback signature to 1.8.21 version

This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs
that have the lock callback implemented and that is just as no-op stubs.
These stubs were removed so the callbacks are now NULL pointers, like
the other VFDs in 1.8.

* Trivial whitespace fix

* Update version to 1.8.22-14.

* Update version in H5public.h

* Set version 1.8.22 for release.

* dd RELEASE.txt entry for HDFFV-10741.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) (#277)

* Cache the pointer to the next point to process after the last call to
H5S__get_select_elem_pointlist.  This allows the normal process of
iterating over the points in batches to be much more efficient, as the
library does not need to traverse the entirety of the preceding points
every time the funciton is re-entered.

* Update RELEASE.txt for point selection iteration performance fix.

* Hdf5 1 8 22 (#281)

* Restores maintainer mode in the autotools (#200)

Maintainer mode should be enabled in development branches.

Also adds helpful commenting.

Add bin/switch_maint_mode
Disable maintainer mode for release.
Fix incomplete merge for stub functions in H5Fdhdfs.c

* Update configure for Restores maintainer mode in the autotools (#200).

* Update MANIFEST for switch_maint_mode script.

* Update so numbers for 1.8.22 release.

* Add so numbers changes in Makefile.ins for 1.8.22 release.

* Update pkgconfig settings with version - #218 (#223)

* Add notice of final HDFF5 1.8 release.
Add solaris 64bit alignment issue to "Known Problems".

* Update 1.8 final release notice.

* Update CMake/HDF5Examples version in bin/release

* Fixed typo in an error message. (#227)

* Remove duplicate setting (#239)

* RELEASE.txt cleanup.

* Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14.

* )Update version.

* Reverts lock/unlock callback signature to 1.8.21 version (#254)

* Reverts lock/unlock callback signature to 1.8.21 version

This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs
that have the lock callback implemented and that is just as no-op stubs.
These stubs were removed so the callbacks are now NULL pointers, like
the other VFDs in 1.8.

* Trivial whitespace fix

* Update version to 1.8.22-14.

* Update version in H5public.h

* Set version 1.8.22 for release.

* dd RELEASE.txt entry for HDFFV-10741.

* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) (#277)

* Cache the pointer to the next point to process after the last call to
H5S__get_select_elem_pointlist.  This allows the normal process of
iterating over the points in batches to be much more efficient, as the
library does not need to traverse the entirety of the preceding points
every time the funciton is re-entered.

* Update RELEASE.txt for point selection iteration performance fix.

Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>

* Hdf5 1 8 22 (#284)

* Fixed typo in an error message.

* Updated for HDFFV-11150, HDFFV-10480, and HDFFV-11159

* Update "Support for New Platforms and Compilers" section in RELEASE.txt;
add check_version workaround for binary compatibility to "Known
Problems".

* Add SUSE Linux to tested platforms.

* Update numbers in config/lt_vers.am and run bin/reconfigure for so
numbers.

* Update version in 3 files missed by merge.

Co-authored-by: Allen Byrne <byrn@hdfgroup.org>
Co-authored-by: Vailin Choi <vchoi@hdfgroup.org>
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
Co-authored-by: hdftest <hdftest@hdfgroup.org>
Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <derobins@hdfgroup.org>
Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>

1 files changed, 116 insertions, 98 deletions

diff --git a/hl/src/H5LTanalyze.c b/hl/src/H5LTanalyze.c
index e49795a..e35f20b 100644
--- a/hl/src/H5LTanalyze.c
+++ b/hl/src/H5LTanalyze.c
@@ -1,25 +1,34 @@
-#if __GNUC__ >= 4 && __GNUC_MINOR__ >=2                           
+#if defined (__GNUC__)                                            
+#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 402                    
 #pragma GCC diagnostic ignored "-Wconversion"                     
 #pragma GCC diagnostic ignored "-Wimplicit-function-declaration"  
 #pragma GCC diagnostic ignored "-Wlarger-than="                   
 #pragma GCC diagnostic ignored "-Wmissing-prototypes"             
 #pragma GCC diagnostic ignored "-Wnested-externs"                 
 #pragma GCC diagnostic ignored "-Wold-style-definition"           
+#pragma GCC diagnostic ignored "-Wredundant-decls"                
 #pragma GCC diagnostic ignored "-Wsign-compare"                   
 #pragma GCC diagnostic ignored "-Wsign-conversion"                
+#pragma GCC diagnostic ignored "-Wstrict-overflow"                
 #pragma GCC diagnostic ignored "-Wstrict-prototypes"              
+#pragma GCC diagnostic ignored "-Wsuggest-attribute=const"        
+#pragma GCC diagnostic ignored "-Wsuggest-attribute=pure"         
 #pragma GCC diagnostic ignored "-Wswitch-default"                 
 #pragma GCC diagnostic ignored "-Wunused-function"                
 #pragma GCC diagnostic ignored "-Wunused-macros"                  
 #pragma GCC diagnostic ignored "-Wunused-parameter"               
+#endif                                                            
+#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 600                    
+#pragma GCC diagnostic ignored "-Wnull-dereference"               
+#endif                                                            
 #elif defined __SUNPRO_CC                                         
 #pragma disable_warn                                              
 #elif defined _MSC_VER                                            
 #pragma warning(push, 1)                                          
 #endif                                                            
-#line 2 "H5LTanalyze.c"
+#line 2 "hl/src/H5LTanalyze.c"
 
-#line 4 "H5LTanalyze.c"
+#line 4 "hl/src/H5LTanalyze.c"
 
 #define  YY_INT_ALIGNED short int
 
@@ -47,7 +56,7 @@
 #define FLEX_SCANNER
 #define YY_FLEX_MAJOR_VERSION 2
 #define YY_FLEX_MINOR_VERSION 5
-#define YY_FLEX_SUBMINOR_VERSION 37
+#define YY_FLEX_SUBMINOR_VERSION 35
 #if YY_FLEX_SUBMINOR_VERSION > 0
 #define FLEX_BETA
 #endif
@@ -85,6 +94,7 @@ typedef int16_t flex_int16_t;
 typedef uint16_t flex_uint16_t;
 typedef int32_t flex_int32_t;
 typedef uint32_t flex_uint32_t;
+typedef uint64_t flex_uint64_t;
 #else
 typedef signed char flex_int8_t;
 typedef short int flex_int16_t;
@@ -92,6 +102,7 @@ typedef int flex_int32_t;
 typedef unsigned char flex_uint8_t; 
 typedef unsigned short int flex_uint16_t;
 typedef unsigned int flex_uint32_t;
+#endif /* ! C99 */
 
 /* Limits of integral types. */
 #ifndef INT8_MIN
@@ -122,8 +133,6 @@ typedef unsigned int flex_uint32_t;
 #define UINT32_MAX             (4294967295U)
 #endif
 
-#endif /* ! C99 */
-
 #endif /* ! FLEXINT_H */
 
 #ifdef __cplusplus
@@ -394,7 +403,7 @@ static void yy_fatal_error (yyconst char msg[]  );
  */
 #define YY_DO_BEFORE_ACTION \
 	(yytext_ptr) = yy_bp; \
-	H5LTyyleng = (size_t) (yy_cp - yy_bp); \
+	H5LTyyleng = (yy_size_t) (yy_cp - yy_bp); \
 	(yy_hold_char) = *yy_cp; \
 	*yy_cp = '\0'; \
 	(yy_c_buf_p) = yy_cp;
@@ -863,7 +872,7 @@ goto find_rule; \
 #define YY_MORE_ADJ 0
 #define YY_RESTORE_YY_MORE_OFFSET
 char *H5LTyytext;
-#line 1 "H5LTanalyze.l"
+#line 1 "hl/src/H5LTanalyze.l"
 /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
  * Copyright by The HDF Group.                                               *
  * Copyright by the Board of Trustees of the University of Illinois.         *
@@ -872,11 +881,16 @@ char *H5LTyytext;
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#line 15 "H5LTanalyze.l"
+/* NOTE!
+ *
+ * If you make any changes to H5LTanalyze.l, please run bin/genparser to
+ * recreate the output files.
+ */
+#line 21 "hl/src/H5LTanalyze.l"
 #include <stdlib.h>
 #include <string.h>
 #include <hdf5.h>
@@ -930,7 +944,7 @@ extern hbool_t is_opq_tag;
 hbool_t        first_quote = 1;
 
 
-#line 915 "H5LTanalyze.c"
+#line 920 "hl/src/H5LTanalyze.c"
 
 #define INITIAL 0
 #define TAG_STRING 1
@@ -1012,7 +1026,7 @@ static int input (void );
 /* This used to be an fputs(), but since the string might contain NUL's,
  * we now use fwrite().
  */
-#define ECHO do { if (fwrite( H5LTyytext, H5LTyyleng, 1, H5LTyyout )) {} } while (0)
+#define ECHO fwrite( H5LTyytext, H5LTyyleng, 1, H5LTyyout )
 #endif
 
 /* Gets input and stuffs it into "buf".  number of characters read, or YY_NULL,
@@ -1023,7 +1037,7 @@ static int input (void );
 	if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \
 		{ \
 		int c = '*'; \
-		size_t n; \
+		yy_size_t n; \
 		for ( n = 0; n < max_size && \
 			     (c = getc( H5LTyyin )) != EOF && c != '\n'; ++n ) \
 			buf[n] = (char) c; \
@@ -1105,10 +1119,10 @@ YY_DECL
 	register char *yy_cp, *yy_bp;
 	register int yy_act;
     
-#line 71 "H5LTanalyze.l"
+#line 77 "hl/src/H5LTanalyze.l"
 
 
-#line 1093 "H5LTanalyze.c"
+#line 1098 "hl/src/H5LTanalyze.c"
 
 	if ( !(yy_init) )
 		{
@@ -1178,6 +1192,7 @@ yy_match:
 yy_find_action:
 		yy_current_state = *--(yy_state_ptr);
 		(yy_lp) = yy_accept[yy_current_state];
+goto find_rule; /* Shut up GCC warning -Wall */
 find_rule: /* we branch to this label when backing up */
 		for ( ; ; ) /* until we find what rule we matched */
 			{
@@ -1202,293 +1217,293 @@ do_action:	/* This label is used only to access EOF actions. */
 	{ /* beginning of action switch */
 case 1:
 YY_RULE_SETUP
-#line 73 "H5LTanalyze.l"
+#line 79 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I8BE_TOKEN);}
 	YY_BREAK
 case 2:
 YY_RULE_SETUP
-#line 74 "H5LTanalyze.l"
+#line 80 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I8LE_TOKEN);}
 	YY_BREAK
 case 3:
 YY_RULE_SETUP
-#line 75 "H5LTanalyze.l"
+#line 81 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I16BE_TOKEN);}
 	YY_BREAK
 case 4:
 YY_RULE_SETUP
-#line 76 "H5LTanalyze.l"
+#line 82 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I16LE_TOKEN);}
 	YY_BREAK
 case 5:
 YY_RULE_SETUP
-#line 77 "H5LTanalyze.l"
+#line 83 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I32BE_TOKEN);}
 	YY_BREAK
 case 6:
 YY_RULE_SETUP
-#line 78 "H5LTanalyze.l"
+#line 84 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I32LE_TOKEN);}
 	YY_BREAK
 case 7:
 YY_RULE_SETUP
-#line 79 "H5LTanalyze.l"
+#line 85 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I64BE_TOKEN);}
 	YY_BREAK
 case 8:
 YY_RULE_SETUP
-#line 80 "H5LTanalyze.l"
+#line 86 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_I64LE_TOKEN);}
 	YY_BREAK
 case 9:
 YY_RULE_SETUP
-#line 82 "H5LTanalyze.l"
+#line 88 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U8BE_TOKEN);}
 	YY_BREAK
 case 10:
 YY_RULE_SETUP
-#line 83 "H5LTanalyze.l"
+#line 89 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U8LE_TOKEN);}
 	YY_BREAK
 case 11:
 YY_RULE_SETUP
-#line 84 "H5LTanalyze.l"
+#line 90 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U16BE_TOKEN);}
 	YY_BREAK
 case 12:
 YY_RULE_SETUP
-#line 85 "H5LTanalyze.l"
+#line 91 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U16LE_TOKEN);}
 	YY_BREAK
 case 13:
 YY_RULE_SETUP
-#line 86 "H5LTanalyze.l"
+#line 92 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U32BE_TOKEN);}
 	YY_BREAK
 case 14:
 YY_RULE_SETUP
-#line 87 "H5LTanalyze.l"
+#line 93 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U32LE_TOKEN);}
 	YY_BREAK
 case 15:
 YY_RULE_SETUP
-#line 88 "H5LTanalyze.l"
+#line 94 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U64BE_TOKEN);}
 	YY_BREAK
 case 16:
 YY_RULE_SETUP
-#line 89 "H5LTanalyze.l"
+#line 95 "hl/src/H5LTanalyze.l"
 {return hid(H5T_STD_U64LE_TOKEN);}
 	YY_BREAK
 case 17:
 YY_RULE_SETUP
-#line 91 "H5LTanalyze.l"
+#line 97 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_CHAR_TOKEN);}
 	YY_BREAK
 case 18:
 YY_RULE_SETUP
-#line 92 "H5LTanalyze.l"
+#line 98 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_SCHAR_TOKEN);}
 	YY_BREAK
 case 19:
 YY_RULE_SETUP
-#line 93 "H5LTanalyze.l"
+#line 99 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_UCHAR_TOKEN);}
 	YY_BREAK
 case 20:
 YY_RULE_SETUP
-#line 94 "H5LTanalyze.l"
+#line 100 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_SHORT_TOKEN);}
 	YY_BREAK
 case 21:
 YY_RULE_SETUP
-#line 95 "H5LTanalyze.l"
+#line 101 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_USHORT_TOKEN);}
 	YY_BREAK
 case 22:
 YY_RULE_SETUP
-#line 96 "H5LTanalyze.l"
+#line 102 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_INT_TOKEN);}
 	YY_BREAK
 case 23:
 YY_RULE_SETUP
-#line 97 "H5LTanalyze.l"
+#line 103 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_UINT_TOKEN);}
 	YY_BREAK
 case 24:
 YY_RULE_SETUP
-#line 98 "H5LTanalyze.l"
+#line 104 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_LONG_TOKEN);}
 	YY_BREAK
 case 25:
 YY_RULE_SETUP
-#line 99 "H5LTanalyze.l"
+#line 105 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_ULONG_TOKEN);}
 	YY_BREAK
 case 26:
 YY_RULE_SETUP
-#line 100 "H5LTanalyze.l"
+#line 106 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_LLONG_TOKEN);}
 	YY_BREAK
 case 27:
 YY_RULE_SETUP
-#line 101 "H5LTanalyze.l"
+#line 107 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_ULLONG_TOKEN);}
 	YY_BREAK
 case 28:
 YY_RULE_SETUP
-#line 103 "H5LTanalyze.l"
+#line 109 "hl/src/H5LTanalyze.l"
 {return hid(H5T_IEEE_F32BE_TOKEN);}
 	YY_BREAK
 case 29:
 YY_RULE_SETUP
-#line 104 "H5LTanalyze.l"
+#line 110 "hl/src/H5LTanalyze.l"
 {return hid(H5T_IEEE_F32LE_TOKEN);}
 	YY_BREAK
 case 30:
 YY_RULE_SETUP
-#line 105 "H5LTanalyze.l"
+#line 111 "hl/src/H5LTanalyze.l"
 {return hid(H5T_IEEE_F64BE_TOKEN);}
 	YY_BREAK
 case 31:
 YY_RULE_SETUP
-#line 106 "H5LTanalyze.l"
+#line 112 "hl/src/H5LTanalyze.l"
 {return hid(H5T_IEEE_F64LE_TOKEN);}
 	YY_BREAK
 case 32:
 YY_RULE_SETUP
-#line 107 "H5LTanalyze.l"
+#line 113 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_FLOAT_TOKEN);}
 	YY_BREAK
 case 33:
 YY_RULE_SETUP
-#line 108 "H5LTanalyze.l"
+#line 114 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_DOUBLE_TOKEN);}
 	YY_BREAK
 case 34:
 YY_RULE_SETUP
-#line 109 "H5LTanalyze.l"
+#line 115 "hl/src/H5LTanalyze.l"
 {return hid(H5T_NATIVE_LDOUBLE_TOKEN);}
 	YY_BREAK
 case 35:
 YY_RULE_SETUP
-#line 111 "H5LTanalyze.l"
+#line 117 "hl/src/H5LTanalyze.l"
 {return token(H5T_STRING_TOKEN);}
 	YY_BREAK
 case 36:
 YY_RULE_SETUP
-#line 112 "H5LTanalyze.l"
+#line 118 "hl/src/H5LTanalyze.l"
 {return token(STRSIZE_TOKEN);}
 	YY_BREAK
 case 37:
 YY_RULE_SETUP
-#line 113 "H5LTanalyze.l"
+#line 119 "hl/src/H5LTanalyze.l"
 {return token(STRPAD_TOKEN);}
 	YY_BREAK
 case 38:
 YY_RULE_SETUP
-#line 114 "H5LTanalyze.l"
+#line 120 "hl/src/H5LTanalyze.l"
 {return token(CSET_TOKEN);}
 	YY_BREAK
 case 39:
 YY_RULE_SETUP
-#line 115 "H5LTanalyze.l"
+#line 121 "hl/src/H5LTanalyze.l"
 {return token(CTYPE_TOKEN);}
 	YY_BREAK
 case 40:
 YY_RULE_SETUP
-#line 116 "H5LTanalyze.l"
-{return token(H5T_STR_NULLTERM_TOKEN);} 
+#line 122 "hl/src/H5LTanalyze.l"
+{return token(H5T_STR_NULLTERM_TOKEN);}
 	YY_BREAK
 case 41:
 YY_RULE_SETUP
-#line 117 "H5LTanalyze.l"
-{return token(H5T_STR_NULLPAD_TOKEN);} 
+#line 123 "hl/src/H5LTanalyze.l"
+{return token(H5T_STR_NULLPAD_TOKEN);}
 	YY_BREAK
 case 42:
 YY_RULE_SETUP
-#line 118 "H5LTanalyze.l"
-{return token(H5T_STR_SPACEPAD_TOKEN);} 
+#line 124 "hl/src/H5LTanalyze.l"
+{return token(H5T_STR_SPACEPAD_TOKEN);}
 	YY_BREAK
 case 43:
 YY_RULE_SETUP
-#line 119 "H5LTanalyze.l"
+#line 125 "hl/src/H5LTanalyze.l"
 {return token(H5T_CSET_ASCII_TOKEN);}
 	YY_BREAK
 case 44:
 YY_RULE_SETUP
-#line 120 "H5LTanalyze.l"
+#line 126 "hl/src/H5LTanalyze.l"
 {return token(H5T_CSET_UTF8_TOKEN);}
 	YY_BREAK
 case 45:
 YY_RULE_SETUP
-#line 121 "H5LTanalyze.l"
+#line 127 "hl/src/H5LTanalyze.l"
 {return token(H5T_C_S1_TOKEN);}
 	YY_BREAK
 case 46:
 YY_RULE_SETUP
-#line 122 "H5LTanalyze.l"
+#line 128 "hl/src/H5LTanalyze.l"
 {return token(H5T_FORTRAN_S1_TOKEN);}
 	YY_BREAK
 case 47:
 YY_RULE_SETUP
-#line 123 "H5LTanalyze.l"
+#line 129 "hl/src/H5LTanalyze.l"
 {return token(H5T_VARIABLE_TOKEN);}
 	YY_BREAK
 case 48:
 YY_RULE_SETUP
-#line 125 "H5LTanalyze.l"
+#line 131 "hl/src/H5LTanalyze.l"
 {return token(H5T_COMPOUND_TOKEN);}
 	YY_BREAK
 case 49:
 YY_RULE_SETUP
-#line 126 "H5LTanalyze.l"
+#line 132 "hl/src/H5LTanalyze.l"
 {return token(H5T_ENUM_TOKEN);}
 	YY_BREAK
 case 50:
 YY_RULE_SETUP
-#line 127 "H5LTanalyze.l"
+#line 133 "hl/src/H5LTanalyze.l"
 {return token(H5T_ARRAY_TOKEN);}
 	YY_BREAK
 case 51:
 YY_RULE_SETUP
-#line 128 "H5LTanalyze.l"
+#line 134 "hl/src/H5LTanalyze.l"
 {return token(H5T_VLEN_TOKEN);}
 	YY_BREAK
 case 52:
 YY_RULE_SETUP
-#line 130 "H5LTanalyze.l"
+#line 136 "hl/src/H5LTanalyze.l"
 {return token(H5T_OPAQUE_TOKEN);}
 	YY_BREAK
 case 53:
 YY_RULE_SETUP
-#line 131 "H5LTanalyze.l"
+#line 137 "hl/src/H5LTanalyze.l"
 {return token(OPQ_SIZE_TOKEN);}
 	YY_BREAK
 case 54:
 YY_RULE_SETUP
-#line 132 "H5LTanalyze.l"
+#line 138 "hl/src/H5LTanalyze.l"
 {return token(OPQ_TAG_TOKEN);}
 	YY_BREAK
 case 55:
 YY_RULE_SETUP
-#line 134 "H5LTanalyze.l"
-{    
-                        if( is_str_size || (is_enum && is_enum_memb) || 
+#line 140 "hl/src/H5LTanalyze.l"
+{
+                        if( is_str_size || (is_enum && is_enum_memb) ||
                             is_opq_size || (asindex>-1 && arr_stack[asindex].is_dim) ||
                             (csindex>-1 && cmpd_stack[csindex].is_field) ) {
                             H5LTyylval.ival = atoi(H5LTyytext);
-                            return NUMBER; 
+                            return NUMBER;
                         } else
                             REJECT;
                  }
 	YY_BREAK
 case 56:
 YY_RULE_SETUP
-#line 144 "H5LTanalyze.l"
+#line 150 "hl/src/H5LTanalyze.l"
 {
                     /*if it's first quote, and is a compound field name or an enum symbol*/
-                    if((is_opq_tag || is_enum || (csindex>-1 && cmpd_stack[csindex].is_field)) 
+                    if((is_opq_tag || is_enum || (csindex>-1 && cmpd_stack[csindex].is_field))
                         && first_quote) {
                         first_quote = 0;
                         BEGIN TAG_STRING;
@@ -1500,7 +1515,7 @@ YY_RULE_SETUP
 case 57:
 /* rule 57 can match eol */
 YY_RULE_SETUP
-#line 154 "H5LTanalyze.l"
+#line 160 "hl/src/H5LTanalyze.l"
 {
 #ifdef H5_HAVE_WIN32_API
                     H5LTyylval.sval = _strdup(H5LTyytext);
@@ -1513,52 +1528,52 @@ YY_RULE_SETUP
 	YY_BREAK
 case 58:
 YY_RULE_SETUP
-#line 164 "H5LTanalyze.l"
+#line 170 "hl/src/H5LTanalyze.l"
 {return token('{');}
 	YY_BREAK
 case 59:
 YY_RULE_SETUP
-#line 165 "H5LTanalyze.l"
+#line 171 "hl/src/H5LTanalyze.l"
 {return token('}');}
 	YY_BREAK
 case 60:
 YY_RULE_SETUP
-#line 166 "H5LTanalyze.l"
+#line 172 "hl/src/H5LTanalyze.l"
 {return token('[');}
 	YY_BREAK
 case 61:
 YY_RULE_SETUP
-#line 167 "H5LTanalyze.l"
+#line 173 "hl/src/H5LTanalyze.l"
 {return token(']');}
 	YY_BREAK
 case 62:
 YY_RULE_SETUP
-#line 168 "H5LTanalyze.l"
+#line 174 "hl/src/H5LTanalyze.l"
 {return token(':');}
 	YY_BREAK
 case 63:
 YY_RULE_SETUP
-#line 169 "H5LTanalyze.l"
+#line 175 "hl/src/H5LTanalyze.l"
 {return token(';');}
 	YY_BREAK
 case 64:
 /* rule 64 can match eol */
 YY_RULE_SETUP
-#line 170 "H5LTanalyze.l"
+#line 176 "hl/src/H5LTanalyze.l"
 ;
 	YY_BREAK
 case 65:
 /* rule 65 can match eol */
 YY_RULE_SETUP
-#line 171 "H5LTanalyze.l"
+#line 177 "hl/src/H5LTanalyze.l"
 { return 0; }
 	YY_BREAK
 case 66:
 YY_RULE_SETUP
-#line 173 "H5LTanalyze.l"
+#line 179 "hl/src/H5LTanalyze.l"
 ECHO;
 	YY_BREAK
-#line 1543 "H5LTanalyze.c"
+#line 1549 "hl/src/H5LTanalyze.c"
 			case YY_STATE_EOF(INITIAL):
 			case YY_STATE_EOF(TAG_STRING):
 				yyterminate();
@@ -1851,7 +1866,7 @@ static int yy_get_next_buffer (void)
 	if ( ! yy_is_jam )
 		*(yy_state_ptr)++ = yy_current_state;
 
-		return yy_is_jam ? 0 : yy_current_state;
+	return yy_is_jam ? 0 : yy_current_state;
 }
 
     static void yyunput (int c, register char * yy_bp )
@@ -1939,7 +1954,7 @@ static int yy_get_next_buffer (void)
 				case EOB_ACT_END_OF_FILE:
 					{
 					if ( H5LTyywrap( ) )
-						return EOF;
+						return 0;
 
 					if ( ! (yy_did_buffer_switch_on_eof) )
 						YY_NEW_FILE;
@@ -2075,6 +2090,10 @@ static void H5LTyy_load_buffer_state  (void)
 	H5LTyyfree((void *) b  );
 }
 
+#ifndef __cplusplus
+extern int isatty (int );
+#endif /* __cplusplus */
+    
 /* Initializes or reinitializes a buffer.
  * This function is sometimes called more than once on the same buffer,
  * such as during a H5LTyyrestart() or at EOF.
@@ -2279,8 +2298,8 @@ YY_BUFFER_STATE H5LTyy_scan_string (yyconst char * yystr )
 
 /** Setup the input buffer state to scan the given bytes. The next call to H5LTyylex() will
  * scan from a @e copy of @a bytes.
- * @param yybytes the byte buffer to scan
- * @param _yybytes_len the number of bytes in the buffer pointed to by @a bytes.
+ * @param bytes the byte buffer to scan
+ * @param len the number of bytes in the buffer pointed to by @a bytes.
  * 
  * @return the newly allocated buffer state object.
  */
@@ -2288,8 +2307,7 @@ YY_BUFFER_STATE H5LTyy_scan_bytes  (yyconst char * yybytes, yy_size_t  _yybytes_
 {
 	YY_BUFFER_STATE b;
 	char *buf;
-	yy_size_t n;
-	int i;
+	yy_size_t n, i;
     
 	/* Get memory for full buffer, including space for trailing EOB's. */
 	n = _yybytes_len + 2;
@@ -2527,14 +2545,14 @@ void H5LTyyfree (void * ptr )
 
 #define YYTABLES_NAME "yytables"
 
-#line 173 "H5LTanalyze.l"
+#line 179 "hl/src/H5LTanalyze.l"
 
 
 int my_yyinput(char *buf, int max_size)
 {
    int ret;
-    
-   memcpy(buf, myinput, input_len); 
+
+   memcpy(buf, myinput, input_len);
    ret = (int)input_len;
    return ret;
 }