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author | Larry Knox <lrknox@hdfgroup.org> | 2017-12-01 18:41:26 (GMT) |
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committer | Larry Knox <lrknox@hdfgroup.org> | 2017-12-01 18:41:26 (GMT) |
commit | b8c6b68c35fa2be23ef488a1d81097ff3ed55000 (patch) | |
tree | c3429ee577e454526c8704d66a84f0c45b7959a1 /tools/lib/h5diff_dset.c | |
parent | 23a702e7bad93fc4f14eab07678c75d276e2d0ad (diff) | |
parent | 60f76980aab92f0e0730170b99a2363acd3c97fa (diff) | |
download | hdf5-hdf5-1_8_20.zip hdf5-hdf5-1_8_20.tar.gz hdf5-hdf5-1_8_20.tar.bz2 |
Merge pull request #811 in HDFFV/hdf5 from hdf5_1_8_20 to 1.8/masterhdf5-1_8_20
* commit '60f76980aab92f0e0730170b99a2363acd3c97fa': (108 commits)
Update version numbers and remove empty sections in RELEASE.txt.
Restore line 1154: C2Cppfunction_map.mht to HTML_EXTRA_FILES.
Update version for 1.8.20 release.
Fixed documentation warnings
HDFFV-10329 Correct LINK INTERFACE and VS20013 compile
Switch default build mode from development to production. Increment version string to pre2.
Add RELEASE.txt note for HDFFV-10274. (cherry picked from commit f7a7d0a00613cba997212fa8032091629a678797)
Initialize hid_t variables in test_Attr_bug9. (cherry picked from commit 97bc393449f3fe02c5992872ab2842e12f611ef0)
Fix HDFFV-10274. When deleting all (or almost all) of the messages in an object header chunk, where the total amount deleted was greater than 64K, an error would occur due to an off by one error in the code that handled that case. Fixed this and added a test case. (cherry picked from commit 1b2c2ca9a6a7d7e1fcd5c3302e203f2e2dabf0af)
Fix linking of libs
Changed file path to relative.
iAdd NAG to supported compilers in RELEASE.txt.
Add description to RELEASE.txt for HDFFV-10323
Correct issue number
Set version to 1.8.20-pre1
Update supported and tested platforms in RELEASE.txt.
HDFFV-10321 Merge from 1.8
Incremented lib file .so numbers: revision for all except c++ for code change; current incremented, revision and age set to 0 for c++ due to symbols added and removed.
updated issues related to Fortran
Incremented lib file .so numbers: revision for all except c++ for dcode change; current incremented, revision and age set to 0 for c++ due to symbols added and removed.
...
Diffstat (limited to 'tools/lib/h5diff_dset.c')
-rw-r--r-- | tools/lib/h5diff_dset.c | 633 |
1 files changed, 298 insertions, 335 deletions
diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 1ac3d79..9d0462d 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -1,15 +1,15 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * -* Copyright by The HDF Group. * -* Copyright by the Board of Trustees of the University of Illinois. * -* All rights reserved. * -* * -* This file is part of HDF5. The full HDF5 copyright notice, including * -* terms governing use, modification, and redistribution, is contained in * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * -* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include "H5private.h" #include "h5tools.h" @@ -19,25 +19,22 @@ /*------------------------------------------------------------------------- -* Function: diff_dataset -* -* Purpose: check for comparable datasets and read into a compatible -* memory type -* -* Return: Number of differences found -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: May 9, 2003 -* -*------------------------------------------------------------------------- -*/ -hsize_t diff_dataset( hid_t file1_id, - hid_t file2_id, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *options) + * Function: diff_dataset + * + * Purpose: check for comparable datasets and read into a compatible + * memory type + * + * Return: Number of differences found + *------------------------------------------------------------------------- + */ +hsize_t diff_dataset(hid_t file1_id, + hid_t file2_id, + const char *obj1_name, + const char *obj2_name, + diff_opt_t *opts) { + int ret_value = opts->err_stat; + int status = -1; hid_t did1 = -1; hid_t did2 = -1; hid_t dcpl1 = -1; @@ -46,53 +43,45 @@ hsize_t diff_dataset( hid_t file1_id, h5difftrace("diff_dataset start\n"); /*------------------------------------------------------------------------- - * open the handles - *------------------------------------------------------------------------- - */ - /* disable error reporting */ - H5E_BEGIN_TRY - { - /* Open the datasets */ - if((did1 = H5Dopen2(file1_id, obj1_name, H5P_DEFAULT)) < 0) { - parallel_print("Cannot open dataset <%s>\n", obj1_name); - goto error; - } - if((did2 = H5Dopen2(file2_id, obj2_name, H5P_DEFAULT)) < 0) { - parallel_print("Cannot open dataset <%s>\n", obj2_name); - goto error; - } - /* enable error reporting */ - } H5E_END_TRY; - + * open the handles + *------------------------------------------------------------------------- + */ + /* Open the datasets */ + if((did1 = H5Dopen2(file1_id, obj1_name, H5P_DEFAULT)) < 0) { + parallel_print("Cannot open dataset <%s>\n", obj1_name); + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 first dataset failed"); + } + if((did2 = H5Dopen2(file2_id, obj2_name, H5P_DEFAULT)) < 0) { + parallel_print("Cannot open dataset <%s>\n", obj2_name); + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 second dataset failed"); + } if((dcpl1 = H5Dget_create_plist(did1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist first dataset failed"); if((dcpl2 = H5Dget_create_plist(did2)) < 0) - goto error; - - /*------------------------------------------------------------------------- - * check if the dataset creation property list has filters that - * are not registered in the current configuration - * 1) the external filters GZIP and SZIP might not be available - * 2) the internal filters might be turned off - *------------------------------------------------------------------------- - */ - if ((h5tools_canreadf((options->m_verbose ? obj1_name : NULL), dcpl1) == 1) && - (h5tools_canreadf((options->m_verbose ? obj2_name : NULL), dcpl2) == 1)) - nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, options); - else - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist second dataset failed"); /*------------------------------------------------------------------------- - * close - *------------------------------------------------------------------------- - */ - goto done; - -error: - options->err_stat = 1; + * check if the dataset creation property list has filters that + * are not registered in the current configuration + * 1) the external filters GZIP and SZIP might not be available + * 2) the internal filters might be turned off + *------------------------------------------------------------------------- + */ + if ((status = h5tools_canreadf((opts->m_verbose ? obj1_name : NULL), dcpl1) == 1) && + (status = h5tools_canreadf((opts->m_verbose ? obj2_name : NULL), dcpl2) == 1)) + nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, opts); + else if (status < 0) { + HGOTO_ERROR(1, H5E_tools_min_id_g, "h5tools_canreadf failed"); + } + else { + ret_value = 1; + opts->not_cmp = 1; + } done: + opts->err_stat = opts->err_stat | ret_value; + /* disable error reporting */ H5E_BEGIN_TRY { H5Pclose(dcpl1); @@ -102,81 +91,75 @@ done: /* enable error reporting */ } H5E_END_TRY; - h5difftrace("diff_dataset end\n"); + h5diffdebug3("diff_dataset finish:%d - errstat:%d\n", nfound, opts->err_stat); return nfound; } /*------------------------------------------------------------------------- -* Function: diff_datasetid -* -* Purpose: check for comparable datasets and read into a compatible -* memory type -* -* Return: Number of differences found -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: May 9, 2003 -* -* Modifications: -* -* -* October 2006: Read by hyperslabs for big datasets. -* -* A threshold of H5TOOLS_MALLOCSIZE (128 MB) is the limit upon which I/O hyperslab is done -* i.e., if the memory needed to read a dataset is greater than this limit, -* then hyperslab I/O is done instead of one operation I/O -* For each dataset, the memory needed is calculated according to -* -* memory needed = number of elements * size of each element -* -* if the memory needed is lower than H5TOOLS_MALLOCSIZE, then the following operations -* are done -* -* H5Dread( input_dataset1 ) -* H5Dread( input_dataset2 ) -* -* with all elements in the datasets selected. If the memory needed is greater than -* H5TOOLS_MALLOCSIZE, then the following operations are done instead: -* -* a strip mine is defined for each dimension k (a strip mine is defined as a -* hyperslab whose size is memory manageable) according to the formula -* -* (1) strip_mine_size[k ] = MIN(dimension[k ], H5TOOLS_BUFSIZE / size of memory type) -* -* where H5TOOLS_BUFSIZE is a constant currently defined as 1MB. This formula assures -* that for small datasets (small relative to the H5TOOLS_BUFSIZE constant), the strip -* mine size k is simply defined as its dimension k, but for larger datasets the -* hyperslab size is still memory manageable. -* a cycle is done until the number of elements in the dataset is reached. In each -* iteration, two parameters are defined for the function H5Sselect_hyperslab, -* the start and size of each hyperslab, according to -* -* (2) hyperslab_size [k] = MIN(dimension[k] - hyperslab_offset[k], strip_mine_size [k]) -* -* where hyperslab_offset [k] is initially set to zero, and later incremented in -* hyperslab_size[k] offsets. The reason for the operation -* -* dimension[k] - hyperslab_offset[k] -* -* in (2) is that, when using the strip mine size, it assures that the "remaining" part -* of the dataset that does not fill an entire strip mine is processed. -* -*------------------------------------------------------------------------- -*/ -hsize_t diff_datasetid( hid_t did1, - hid_t did2, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *options) + * Function: diff_datasetid + * + * Purpose: check for comparable datasets and read into a compatible + * memory type + * + * Return: Number of differences found + * + * October 2006: Read by hyperslabs for big datasets. + * + * A threshold of H5TOOLS_MALLOCSIZE (128 MB) is the limit upon which I/O hyperslab is done + * i.e., if the memory needed to read a dataset is greater than this limit, + * then hyperslab I/O is done instead of one operation I/O + * For each dataset, the memory needed is calculated according to + * + * memory needed = number of elements * size of each element + * + * if the memory needed is lower than H5TOOLS_MALLOCSIZE, then the following operations + * are done + * + * H5Dread( input_dataset1 ) + * H5Dread( input_dataset2 ) + * + * with all elements in the datasets selected. If the memory needed is greater than + * H5TOOLS_MALLOCSIZE, then the following operations are done instead: + * + * a strip mine is defined for each dimension k (a strip mine is defined as a + * hyperslab whose size is memory manageable) according to the formula + * + * (1) strip_mine_size[k ] = MIN(dimension[k ], H5TOOLS_BUFSIZE / size of memory type) + * + * where H5TOOLS_BUFSIZE is a constant currently defined as 1MB. This formula assures + * that for small datasets (small relative to the H5TOOLS_BUFSIZE constant), the strip + * mine size k is simply defined as its dimension k, but for larger datasets the + * hyperslab size is still memory manageable. + * a cycle is done until the number of elements in the dataset is reached. In each + * iteration, two parameters are defined for the function H5Sselect_hyperslab, + * the start and size of each hyperslab, according to + * + * (2) hyperslab_size [k] = MIN(dimension[k] - hyperslab_offset[k], strip_mine_size [k]) + * + * where hyperslab_offset [k] is initially set to zero, and later incremented in + * hyperslab_size[k] offsets. The reason for the operation + * + * dimension[k] - hyperslab_offset[k] + * + * in (2) is that, when using the strip mine size, it assures that the "remaining" part + * of the dataset that does not fill an entire strip mine is processed. + * + *------------------------------------------------------------------------- + */ +hsize_t diff_datasetid(hid_t did1, + hid_t did2, + const char *obj1_name, + const char *obj2_name, + diff_opt_t *opts) { - hid_t sid1=-1; - hid_t sid2=-1; - hid_t f_tid1=-1; - hid_t f_tid2=-1; - hid_t dam_tid=-1; /* m_tid for diff_array function */ - hid_t m_tid1=-1; - hid_t m_tid2=-1; + int ret_value = opts->err_stat; + hid_t sid1 = -1; + hid_t sid2 = -1; + hid_t f_tid1 = -1; + hid_t f_tid2 = -1; + hid_t dam_tid = -1; /* m_tid for diff_array function */ + hid_t m_tid1 = -1; + hid_t m_tid2 = -1; hid_t dcpl1 = -1; hid_t dcpl2 = -1; H5D_layout_t stl1 = -1; @@ -196,78 +179,78 @@ hsize_t diff_datasetid( hid_t did1, hsize_t dims2[H5S_MAX_RANK]; hsize_t maxdim1[H5S_MAX_RANK]; hsize_t maxdim2[H5S_MAX_RANK]; - const char *name1=NULL; /* relative names */ - const char *name2=NULL; + const char *name1 = NULL; /* relative names */ + const char *name2 = NULL; hsize_t storage_size1; hsize_t storage_size2; - hsize_t nfound=0; /* number of differences found */ - int can_compare=1; /* do diff or not */ - void *buf1=NULL; - void *buf2=NULL; - void *sm_buf1=NULL; - void *sm_buf2=NULL; - hid_t sm_space; /*stripmine data space */ - size_t need; /* bytes needed for malloc */ + hsize_t nfound = 0; /* number of differences found */ + int can_compare = 1; /* do diff or not */ + void *buf1 = NULL; + void *buf2 = NULL; + void *sm_buf1 = NULL; + void *sm_buf2 = NULL; + hid_t sm_space = -1; /*stripmine data space */ + size_t need; /* bytes needed for malloc */ int i; - unsigned int vl_data = 0; /*contains VL datatypes */ + unsigned int vl_data = 0; /*contains VL datatypes */ h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ if((sid1 = H5Dget_space(did1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); /* Get rank */ if((rank1 = H5Sget_simple_extent_ndims(sid1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); /* Get the dataspace handle */ if((sid2 = H5Dget_space(did2)) < 0 ) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); /* Get rank */ if((rank2 = H5Sget_simple_extent_ndims(sid2)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); /* Get dimensions */ if(H5Sget_simple_extent_dims(sid1, dims1, maxdim1) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); /* Get dimensions */ if(H5Sget_simple_extent_dims(sid2, dims2, maxdim2) < 0) - goto error; + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); h5diffdebug3("rank: %ld - %ld\n", rank1, rank2); /*------------------------------------------------------------------------- - * get the file data type - *------------------------------------------------------------------------- - */ + * get the file data type + *------------------------------------------------------------------------- + */ /* Get the data type */ if((f_tid1 = H5Dget_type(did1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); /* Get the data type */ if((f_tid2 = H5Dget_type(did2)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); /*------------------------------------------------------------------------- - * get the storage layout type - *------------------------------------------------------------------------- - */ + * get the storage layout type + *------------------------------------------------------------------------- + */ if((dcpl1 = H5Dget_create_plist(did1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((dcpl2 = H5Dget_create_plist(did2)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((stl1 = H5Pget_layout(dcpl1)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); if((stl2 = H5Pget_layout(dcpl2)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); /*------------------------------------------------------------------------- - * check for empty datasets - *------------------------------------------------------------------------- - */ + * check for empty datasets + *------------------------------------------------------------------------- + */ h5difftrace("check for empty datasets\n"); storage_size1 = H5Dget_storage_size(did1); @@ -275,66 +258,69 @@ hsize_t diff_datasetid( hid_t did1, h5diffdebug3("storage size: %ld - %ld\n", storage_size1, storage_size2); if(storage_size1 == 0 || storage_size2 == 0) { - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) - parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name); + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) + parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name); can_compare = 0; - options->not_cmp = 1; + opts->not_cmp = 1; } /*------------------------------------------------------------------------- - * check for comparable TYPE and SPACE - *------------------------------------------------------------------------- - */ + * check for comparable TYPE and SPACE + *------------------------------------------------------------------------- + */ if (diff_can_type(f_tid1, f_tid2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, obj1_name, obj2_name, - options, 0) != 1) + opts, 0) != 1) can_compare = 0; + h5diffdebug2("diff_can_type - errstat:%d\n", opts->err_stat); /*------------------------------------------------------------------------- - * memory type and sizes - *------------------------------------------------------------------------- - */ + * memory type and sizes + *------------------------------------------------------------------------- + */ h5difftrace("check for memory type and sizes\n"); if((m_tid1 = H5Tget_native_type(f_tid1, H5T_DIR_DEFAULT)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); if((m_tid2 = H5Tget_native_type(f_tid2, H5T_DIR_DEFAULT)) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); m_size1 = H5Tget_size(m_tid1); m_size2 = H5Tget_size(m_tid2); h5diffdebug3("type size: %ld - %ld\n", m_size1, m_size2); /*------------------------------------------------------------------------- - * check for different signed/unsigned types - *------------------------------------------------------------------------- - */ + * check for different signed/unsigned types + *------------------------------------------------------------------------- + */ if(can_compare) { h5difftrace("can_compare for sign\n"); sign1 = H5Tget_sign(m_tid1); sign2 = H5Tget_sign(m_tid2); if(sign1 != sign2) { h5difftrace("sign1 != sign2\n"); - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1)); parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2)); } can_compare = 0; - options->not_cmp = 1; + opts->not_cmp = 1; } } /* Check if type is either VLEN-data or VLEN-string to reclaim any - * VLEN memory buffer later */ + * VLEN memory buffer later + */ if(TRUE == h5tools_detect_vlen(m_tid1)) vl_data = TRUE; + h5diffdebug2("h5tools_detect_vlen - errstat:%d\n", opts->err_stat); /*------------------------------------------------------------------------ - * only attempt to compare if possible - *------------------------------------------------------------------------- - */ + * only attempt to compare if possible + *------------------------------------------------------------------------- + */ if(can_compare) { /* it is possible to compare */ H5T_class_t tclass = H5Tget_class(f_tid1); h5difftrace("can_compare attempt\n"); @@ -352,25 +338,24 @@ hsize_t diff_datasetid( hid_t did1, nelmts2 *= dims2[i]; h5diffdebug3("nelmts: %ld - %ld\n", nelmts1, nelmts2); - HDassert(nelmts1 == nelmts2); if(tclass != H5T_ARRAY) { /*----------------------------------------------------------------- - * "upgrade" the smaller memory size - *------------------------------------------------------------------ - */ + * "upgrade" the smaller memory size + *------------------------------------------------------------------ + */ h5difftrace("upgrade the smaller memory size?\n"); if (FAIL == match_up_memsize (f_tid1, f_tid2, &m_tid1, &m_tid2, &m_size1, &m_size2)) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "match_up_memsize failed"); h5diffdebug3("m_size: %ld - %ld\n", m_size1, m_size2); dadims = dims1; dam_size = m_size1; dam_tid = m_tid1; danelmts = nelmts1; need = (size_t)(nelmts1 * m_size1); /* bytes needed */ - } + } else { h5diffdebug3("Array dims: %d - %d\n", dims1[0], dims2[0]); /* Compare the smallest array, but create the largest buffer */ @@ -394,12 +379,13 @@ hsize_t diff_datasetid( hid_t did1, name1 = diff_basename(obj1_name); if(obj2_name) name2 = diff_basename(obj2_name); + h5diffdebug3("obj_names: %s - %s\n", name1, name2); /*---------------------------------------------------------------- - * read/compare - *----------------------------------------------------------------- - */ + * read/compare + *----------------------------------------------------------------- + */ if(need < H5TOOLS_MALLOCSIZE) { buf1 = HDmalloc(need); buf2 = HDmalloc(need); @@ -408,20 +394,30 @@ hsize_t diff_datasetid( hid_t did1, if(buf1 != NULL && buf2 != NULL) { h5difftrace("buf1 != NULL && buf2 != NULL\n"); if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); h5difftrace("H5Dread did2\n"); if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); /* array diff */ nfound = diff_array(buf1, buf2, danelmts, (hsize_t)0, rank1, dadims, - options, name1, name2, dam_tid, did1, did2); + opts, name1, name2, dam_tid, did1, did2); + h5diffdebug2("diff_array nfound:%d\n", nfound); /* reclaim any VL memory, if necessary */ if(vl_data) { + h5difftrace("check vl_data\n"); H5Dvlen_reclaim(m_tid1, sid1, H5P_DEFAULT, buf1); H5Dvlen_reclaim(m_tid2, sid2, H5P_DEFAULT, buf2); } /* end if */ + if(buf1 != NULL) { + HDfree(buf1); + buf1 = NULL; + } + if(buf2 != NULL) { + HDfree(buf2); + buf2 = NULL; + } } /* end if */ else { /* possibly not enough memory, read/compare by hyperslabs */ size_t p_type_nbytes = dam_size; /*size of memory type */ @@ -453,7 +449,7 @@ hsize_t diff_datasetid( hid_t did1, size = 1; sm_size[i - 1] = MIN(dadims[i - 1], size); sm_nbytes *= sm_size[i - 1]; - HDassert(sm_nbytes > 0); + h5diffdebug2("sm_nbytes: %ld\n", sm_nbytes); } /* end for */ /* malloc return code should be verified. @@ -463,10 +459,10 @@ hsize_t diff_datasetid( hid_t did1, * that fails to address freeing other objects created here. * E.g., sm_space. */ - sm_buf1 = HDmalloc((size_t)sm_nbytes); - HDassert(sm_buf1); - sm_buf2 = HDmalloc((size_t)sm_nbytes); - HDassert(sm_buf2); + if((sm_buf1 = HDmalloc((size_t)sm_nbytes)) == NULL) + HGOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); + if((sm_buf2 = HDmalloc((size_t)sm_nbytes)) == NULL) + HGOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); sm_nelmts = sm_nbytes / p_type_nbytes; sm_space = H5Screate_simple(1, &sm_nelmts, NULL); @@ -483,24 +479,24 @@ hsize_t diff_datasetid( hid_t did1, hs_nelmts *= hs_size[i]; } /* end for */ if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); } /* end if */ else hs_nelmts = 1; if(H5Dread(did1, m_tid1, sm_space, sid1, H5P_DEFAULT, sm_buf1) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); if(H5Dread(did2, m_tid2, sm_space, sid2, H5P_DEFAULT, sm_buf2) < 0) - goto error; + HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); /* get array differences. in the case of hyperslab read, increment the number of differences found in each hyperslab and pass the position at the beginning for printing */ nfound += diff_array(sm_buf1, sm_buf2, hs_nelmts, elmtno, rank1, - dadims, options, name1, name2, dam_tid, did1, did2); + dadims, opts, name1, name2, dam_tid, did1, did2); /* reclaim any VL memory, if necessary */ if(vl_data) { @@ -517,6 +513,14 @@ hsize_t diff_datasetid( hid_t did1, carry = 0; } /* i */ } /* elmtno */ + if(sm_buf1 != NULL) { + HDfree(sm_buf1); + sm_buf1 = NULL; + } + if(sm_buf2 != NULL) { + HDfree(sm_buf2); + sm_buf2 = NULL; + } H5Sclose(sm_space); } /* hyperslab read */ @@ -527,40 +531,10 @@ hsize_t diff_datasetid( hid_t did1, * close *------------------------------------------------------------------------- */ - h5difftrace("compare attributes?\n"); - - /* free */ - if(buf1 != NULL) { - HDfree(buf1); - buf1 = NULL; - } /* end if */ - if(buf2 != NULL) { - HDfree(buf2); - buf2 = NULL; - } /* end if */ - if(sm_buf1 != NULL) { - HDfree(sm_buf1); - sm_buf1 = NULL; - } /* end if */ - if(sm_buf2 != NULL) { - HDfree(sm_buf2); - sm_buf2 = NULL; - } /* end if */ - - H5E_BEGIN_TRY { - H5Sclose(sid1); - H5Sclose(sid2); - H5Tclose(f_tid1); - H5Tclose(f_tid2); - H5Tclose(m_tid1); - H5Tclose(m_tid2); - } H5E_END_TRY; - h5difftrace("diff_datasetid finish\n"); - - return nfound; + h5diffdebug2("reclaim any VL memory - errstat:%d\n", opts->err_stat); -error: - options->err_stat=1; +done: + opts->err_stat = opts->err_stat | ret_value; /* free */ if(buf1 != NULL) { @@ -602,60 +576,55 @@ error: H5Tclose(m_tid2); /* enable error reporting */ } H5E_END_TRY; - h5difftrace("diff_datasetid errored\n"); + h5diffdebug3("diff_datasetid return:%d with nfound:%d\n", ret_value, nfound); return nfound; } /*------------------------------------------------------------------------- -* Function: diff_can_type -* -* Purpose: check for comparable TYPE and SPACE -* -* Return: -* 1, can compare -* 0, cannot compare -* -1, error -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 3, 2003 -* -*------------------------------------------------------------------------- -*/ - -int diff_can_type( hid_t f_tid1, /* file data type */ - hid_t f_tid2, /* file data type */ - int rank1, - int rank2, - hsize_t *dims1, - hsize_t *dims2, - hsize_t *maxdim1, - hsize_t *maxdim2, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *options, - int is_compound) + * Function: diff_can_type + * + * Purpose: check for comparable TYPE and SPACE + * + * Return: + * 1, can compare + * 0, cannot compare + * -1, error + *------------------------------------------------------------------------- + */ + +int diff_can_type(hid_t f_tid1, /* file data type */ + hid_t f_tid2, /* file data type */ + int rank1, + int rank2, + hsize_t *dims1, + hsize_t *dims2, + hsize_t *maxdim1, + hsize_t *maxdim2, + const char *obj1_name, + const char *obj2_name, + diff_opt_t *opts, + int is_compound) { + int ret_value = 1; /* can_compare value */ H5T_class_t tclass1; H5T_class_t tclass2; int maxdim_diff = 0; /* maximum dimensions are different */ int dim_diff = 0; /* current dimensions are different */ int i; - int can_compare = 1; /* return value */ h5difftrace("diff_can_type start\n"); /*------------------------------------------------------------------------- - * check for the same class - *------------------------------------------------------------------------- - */ + * check for the same class + *------------------------------------------------------------------------- + */ if((tclass1 = H5Tget_class(f_tid1)) < 0) - return -1; + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class first object failed"); if((tclass2 = H5Tget_class(f_tid2)) < 0) - return -1; + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class second object failed"); if(tclass1 != tclass2) { - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { if(is_compound) { parallel_print("Not comparable: <%s> has a class %s and <%s> has a class %s\n", obj1_name, get_class(tclass1), @@ -667,25 +636,22 @@ int diff_can_type( hid_t f_tid1, /* file data type */ obj2_name, get_class(tclass2)); } } - can_compare = 0; - options->not_cmp = 1; - goto done; + opts->not_cmp = 1; + HGOTO_DONE(0); } /*------------------------------------------------------------------------- - * check for non supported classes - *------------------------------------------------------------------------- - */ - HDassert(tclass1 == tclass2); + * check for non supported classes + *------------------------------------------------------------------------- + */ switch (tclass1) { case H5T_TIME: - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> and <%s> are of class %s\n", obj1_name, obj2_name, get_class(tclass2)); } /* end if */ - can_compare = 0; - options->not_cmp = 1; - goto done; + opts->not_cmp = 1; + HGOTO_DONE(0); case H5T_INTEGER: case H5T_FLOAT: @@ -705,10 +671,10 @@ int diff_can_type( hid_t f_tid1, /* file data type */ } /* end switch */ /*------------------------------------------------------------------------- - * check for equal file datatype; warning only - *------------------------------------------------------------------------- - */ - if((H5Tequal(f_tid1, f_tid2) == 0) && (options->m_verbose) && obj1_name && obj2_name) { + * check for equal file datatype; warning only + *------------------------------------------------------------------------- + */ + if((H5Tequal(f_tid1, f_tid2) == 0) && (opts->m_verbose) && obj1_name && obj2_name) { H5T_class_t cl = H5Tget_class(f_tid1); parallel_print("Warning: different storage datatype\n"); @@ -723,11 +689,11 @@ int diff_can_type( hid_t f_tid1, /* file data type */ } /*------------------------------------------------------------------------- - * check for the same rank - *------------------------------------------------------------------------- - */ + * check for the same rank + *------------------------------------------------------------------------- + */ if(rank1 != rank2) { - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1); print_dimensions(rank1, dims1); parallel_print(", max dimensions "); @@ -739,16 +705,14 @@ int diff_can_type( hid_t f_tid1, /* file data type */ print_dimensions(rank2, maxdim2); parallel_print("\n"); } - can_compare = 0; - options->not_cmp = 1; - goto done; + opts->not_cmp = 1; + HGOTO_DONE(0); } /*------------------------------------------------------------------------- - * check for different dimensions - *------------------------------------------------------------------------- - */ - HDassert(rank1 == rank2); + * check for different dimensions + *------------------------------------------------------------------------- + */ for(i = 0; i<rank1; i++) { if(maxdim1 && maxdim2) { if(maxdim1[i] != maxdim2[i]) @@ -759,11 +723,11 @@ int diff_can_type( hid_t f_tid1, /* file data type */ } /*------------------------------------------------------------------------- - * current dimensions - *------------------------------------------------------------------------- - */ + * current dimensions + *------------------------------------------------------------------------- + */ if(dim_diff == 1) { - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1); print_dimensions(rank1, dims1); if(maxdim1 && maxdim2) { @@ -777,17 +741,16 @@ int diff_can_type( hid_t f_tid1, /* file data type */ parallel_print("\n"); } } - can_compare = 0; - options->not_cmp = 1; - goto done; + opts->not_cmp = 1; + HGOTO_DONE(0); } /*------------------------------------------------------------------------- - * maximum dimensions; just give a warning - *------------------------------------------------------------------------- - */ + * maximum dimensions; just give a warning + *------------------------------------------------------------------------- + */ if(maxdim1 && maxdim2 && maxdim_diff == 1 && obj1_name) { - if(options->m_verbose) { + if(opts->m_verbose) { parallel_print( "Warning: different maximum dimensions\n"); parallel_print("<%s> has max dimensions ", obj1_name); print_dimensions(rank1, maxdim1); @@ -802,21 +765,20 @@ int diff_can_type( hid_t f_tid1, /* file data type */ int nmembs1; int nmembs2; int j; - hid_t memb_type1; - hid_t memb_type2; + hid_t memb_type1 = -1; + hid_t memb_type2 = -1; nmembs1 = H5Tget_nmembers(f_tid1); nmembs2 = H5Tget_nmembers(f_tid2); if(nmembs1 != nmembs2) { - if((options->m_verbose || options->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has %d members ", obj1_name, nmembs1); parallel_print("<%s> has %d members ", obj2_name, nmembs2); parallel_print("\n"); } - can_compare = 0; - options->not_cmp = 1; - goto done; + opts->not_cmp = 1; + HGOTO_DONE(0); } for (j = 0; j < nmembs1; j++) { @@ -825,30 +787,31 @@ int diff_can_type( hid_t f_tid1, /* file data type */ if (diff_can_type(memb_type1, memb_type2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, obj1_name, obj2_name, - options, 1) != 1) { - can_compare = 0; - options->not_cmp = 1; + opts, 1) != 1) { + opts->not_cmp = 1; H5Tclose(memb_type1); H5Tclose(memb_type2); - goto done; + HGOTO_DONE(0); } H5Tclose(memb_type1); H5Tclose(memb_type2); } } done: - h5diffdebug2("diff_can_type end - %d\n", can_compare); - return can_compare; + if (ret_value < 0) + opts->err_stat = 1; + + h5diffdebug2("diff_can_type end - %d\n", ret_value); + return ret_value; } /*------------------------------------------------------------------------- -* Function: print_sizes -* -* Purpose: Print datatype sizes -* -*------------------------------------------------------------------------- -*/ + * Function: print_sizes + * + * Purpose: Print datatype sizes + *------------------------------------------------------------------------- + */ #if defined (H5DIFF_DEBUG) void print_sizes( const char *obj1, const char *obj2, |