diff options
Diffstat (limited to 'tools/h5ls/h5ls.c')
| -rw-r--r-- | tools/h5ls/h5ls.c | 2784 |
1 files changed, 1581 insertions, 1203 deletions
diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c index 78a2cce..74b6967 100644 --- a/tools/h5ls/h5ls.c +++ b/tools/h5ls/h5ls.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -16,7 +16,6 @@ * Monday, March 23, 1998 */ - /* * We include the private header file so we can get to the uniform * programming environment it declares. Other than that, h5ls only calls @@ -31,111 +30,111 @@ /* Name of tool */ #define PROGRAMNAME "h5ls" -#define NAME_BUF_SIZE 2048 +#define NAME_BUF_SIZE 2048 /* * Alternative formating for data dumped by H5LS * * This table only affects H5LS output. */ -static h5tool_format_t ls_dataformat = { - 0, /*raw */ - - "", /*fmt_raw */ - "%d", /*fmt_int */ - "%u", /*fmt_uint */ - "%hhd", /*fmt_schar */ - "%u", /*fmt_uchar */ - "%d", /*fmt_short */ - "%u", /*fmt_ushort */ - "%ld", /*fmt_long */ - "%lu", /*fmt_ulong */ - NULL, /*fmt_llong */ - NULL, /*fmt_ullong */ - "%g", /*fmt_double */ - "%g", /*fmt_float */ - - 0, /*ascii */ - 0, /*str_locale */ - 0, /*str_repeat */ - - "[", /*arr_pre */ - ",", /*arr_sep */ - "]", /*arr_suf */ - 1, /*arr_linebreak */ - - "", /*cmpd_name */ - ",", /*cmpd_sep */ - "{", /*cmpd_pre */ - "}", /*cmpd_suf */ - "", /*cmpd_end */ - - ",", /*vlen_sep */ - "(", /*vlen_pre */ - ")", /*vlen_suf */ - "", /*vlen_end */ - - "%s", /*elmt_fmt */ - ",", /*elmt_suf1 */ - " ", /*elmt_suf2 */ - - HSIZE_T_FORMAT, /*idx_n_fmt */ - ",", /*idx_sep */ - "(%s)", /*idx_fmt */ - - 65535, /*line_ncols *//*standard default columns */ - 0, /*line_per_line */ - "", /*line_pre */ - "%s", /*line_1st */ - "%s", /*line_cont */ - "", /*line_suf */ - "", /*line_sep */ - 1, /*line_multi_new */ - "", /*line_indent */ - - 0, /*skip_first */ - - 0, /*obj_hidefileno */ - "-%lu:"H5_PRINTF_HADDR_FMT, /*obj_format */ - - 0, /*dset_hidefileno */ - "DSET-%s ", /*dset_format */ - "%sBlk%lu: ", /*dset_blockformat_pre */ - "%sPt%lu: ", /*dset_ptformat_pre */ - "%s", /*dset_ptformat */ - 1, /*array indices */ - 1 /*escape non printable characters */ +static h5tool_format_t ls_dataformat = { + 0, /*raw */ + + "", /*fmt_raw */ + "%d", /*fmt_int */ + "%u", /*fmt_uint */ + "%hhd", /*fmt_schar */ + "%u", /*fmt_uchar */ + "%d", /*fmt_short */ + "%u", /*fmt_ushort */ + "%ld", /*fmt_long */ + "%lu", /*fmt_ulong */ + NULL, /*fmt_llong */ + NULL, /*fmt_ullong */ + "%g", /*fmt_double */ + "%g", /*fmt_float */ + + 0, /*ascii */ + 0, /*str_locale */ + 0, /*str_repeat */ + + "[", /*arr_pre */ + ",", /*arr_sep */ + "]", /*arr_suf */ + 1, /*arr_linebreak */ + + "", /*cmpd_name */ + ",", /*cmpd_sep */ + "{", /*cmpd_pre */ + "}", /*cmpd_suf */ + "", /*cmpd_end */ + + ",", /*vlen_sep */ + "(", /*vlen_pre */ + ")", /*vlen_suf */ + "", /*vlen_end */ + + "%s", /*elmt_fmt */ + ",", /*elmt_suf1 */ + " ", /*elmt_suf2 */ + + HSIZE_T_FORMAT, /*idx_n_fmt */ + ",", /*idx_sep */ + "(%s)", /*idx_fmt */ + + 65535, + /*line_ncols */ /*standard default columns */ + 0, /*line_per_line */ + "", /*line_pre */ + "%s", /*line_1st */ + "%s", /*line_cont */ + "", /*line_suf */ + "", /*line_sep */ + 1, /*line_multi_new */ + " ", /*line_indent */ + + 0, /*skip_first */ + + 0, /*obj_hidefileno */ + "-%lu:" H5_PRINTF_HADDR_FMT, /*obj_format */ + + 0, /*dset_hidefileno */ + "DSET-%s ", /*dset_format */ + "%sBlk%lu: ", /*dset_blockformat_pre */ + "%sPt%lu: ", /*dset_ptformat_pre */ + "%s", /*dset_ptformat */ + 1, /*array indices */ + 1 /*escape non printable characters */ }; /* Struct to pass through to visitors */ typedef struct { - const char *fname; /* Filename */ - hid_t fid; /* File ID */ - hid_t gid; /* Group ID */ - hbool_t symlink_target; /* Whether this is the target of an symbolic link */ - symlink_trav_t *symlink_list; /* List of visited symbolic links */ - size_t base_len; /* Length of base path name, if not root */ - size_t name_start; /* # of leading characters to strip off path names on output */ -}iter_t; + const char * fname; /* Filename */ + hid_t fid; /* File ID */ + hid_t gid; /* Group ID */ + hbool_t symlink_target; /* Whether this is the target of an symbolic link */ + symlink_trav_t *symlink_list; /* List of visited symbolic links */ + size_t base_len; /* Length of base path name, if not root */ + size_t name_start; /* # of leading characters to strip off path names on output */ +} iter_t; /* Command-line switches */ -static int verbose_g = 0; /* lots of extra output */ -static int width_g = 80; /* output width in characters */ -static hbool_t address_g = FALSE; /* print raw data addresses */ -static hbool_t data_g = FALSE; /* display dataset values? */ -static hbool_t label_g = FALSE; /* label compound values? */ -static hbool_t string_g = FALSE; /* print 1-byte numbers as ASCII? */ -static hbool_t fullname_g = FALSE; /* print full path names */ -static hbool_t recursive_g = FALSE; /* recursive descent listing */ -static hbool_t follow_symlink_g = FALSE; /* follow symbolic links */ -static hbool_t no_dangling_link_g = FALSE; /* treat dangling link is error */ -static hbool_t follow_elink_g = FALSE; /* follow external links */ -static hbool_t grp_literal_g = FALSE; /* list group, not contents */ -static hbool_t hexdump_g = FALSE; /* show data as raw hexadecimal */ -static hbool_t show_errors_g = FALSE; /* print HDF5 error messages */ -static hbool_t simple_output_g = FALSE; /* make output more machine-readable */ -static hbool_t show_file_name_g = FALSE; /* show file name for full names */ -static hbool_t no_line_wrap_g = FALSE; /* show data content without line wrap */ -static hbool_t display_root_g = FALSE; /* show root group in output? */ +static int verbose_g = 0; /* lots of extra output */ +static int width_g = 80; /* output width in characters */ +static hbool_t address_g = FALSE; /* print raw data addresses */ +static hbool_t data_g = FALSE; /* display dataset values? */ +static hbool_t label_g = FALSE; /* label compound values? */ +static hbool_t string_g = FALSE; /* print 1-byte numbers as ASCII? */ +static hbool_t fullname_g = FALSE; /* print full path names */ +static hbool_t recursive_g = FALSE; /* recursive descent listing */ +static hbool_t follow_symlink_g = FALSE; /* follow symbolic links */ +static hbool_t no_dangling_link_g = FALSE; /* treat dangling link is error */ +static hbool_t follow_elink_g = FALSE; /* follow external links */ +static hbool_t grp_literal_g = FALSE; /* list group, not contents */ +static hbool_t hexdump_g = FALSE; /* show data as raw hexadecimal */ +static hbool_t simple_output_g = FALSE; /* make output more machine-readable */ +static hbool_t show_file_name_g = FALSE; /* show file name for full names */ +static hbool_t no_line_wrap_g = FALSE; /* show data content without line wrap */ +static hbool_t display_root_g = FALSE; /* show root group in output? */ /* Information about how to display each type of object */ static struct dispatch_t { @@ -146,63 +145,67 @@ static struct dispatch_t { herr_t (*list2)(hid_t obj, const char *name); } dispatch_g[H5O_TYPE_NTYPES]; -#define DISPATCH(TYPE, NAME, LIST1, LIST2) { \ - dispatch_g[TYPE].name = (NAME); \ - dispatch_g[TYPE].list1 = (LIST1); \ - dispatch_g[TYPE].list2 = (LIST2); \ -} +#define DISPATCH(TYPE, NAME, LIST1, LIST2) \ + { \ + dispatch_g[TYPE].name = (NAME); \ + dispatch_g[TYPE].list1 = (LIST1); \ + dispatch_g[TYPE].list2 = (LIST2); \ + } -static void print_type(h5tools_str_t *buffer, hid_t type, int ind); +static void print_type(h5tools_str_t *buffer, hid_t type, int ind); static hbool_t print_int_type(h5tools_str_t *buffer, hid_t type, int ind); static hbool_t print_float_type(h5tools_str_t *buffer, hid_t type, int ind); -static herr_t visit_obj(hid_t file, const char *oname, iter_t *iter); +static herr_t visit_obj(hid_t file, const char *oname, iter_t *iter); - /*------------------------------------------------------------------------- * Function: usage * * Purpose: Prints a usage message on stderr and then returns. * * Return: void - * - * Programmer: Robb Matzke - * Thursday, July 16, 1998 - * - * Modifications: - * *------------------------------------------------------------------------- */ static void -usage (void) +usage(void) { FLUSHSTREAM(rawoutstream); PRINTVALSTREAM(rawoutstream, "usage: h5ls [OPTIONS] file[/OBJECT] [file[/[OBJECT]...]\n"); PRINTVALSTREAM(rawoutstream, " OPTIONS\n"); PRINTVALSTREAM(rawoutstream, " -h, -?, --help Print a usage message and exit\n"); - PRINTVALSTREAM(rawoutstream, " -a, --address Print raw data address. If dataset is contiguous, address\n"); - PRINTVALSTREAM(rawoutstream, " is offset in file of beginning of raw data. If chunked,\n"); - PRINTVALSTREAM(rawoutstream, " returned list of addresses indicates offset of each chunk.\n"); + PRINTVALSTREAM(rawoutstream, + " -a, --address Print raw data address. If dataset is contiguous, address\n"); + PRINTVALSTREAM(rawoutstream, + " is offset in file of beginning of raw data. If chunked,\n"); + PRINTVALSTREAM(rawoutstream, + " returned list of addresses indicates offset of each chunk.\n"); PRINTVALSTREAM(rawoutstream, " Must be used with -v, --verbose option.\n"); PRINTVALSTREAM(rawoutstream, " Provides no information for non-dataset objects.\n"); PRINTVALSTREAM(rawoutstream, " -d, --data Print the values of datasets\n"); PRINTVALSTREAM(rawoutstream, " --enable-error-stack\n"); - PRINTVALSTREAM(rawoutstream, " Prints messages from the HDF5 error stack as they occur.\n"); + PRINTVALSTREAM(rawoutstream, + " Prints messages from the HDF5 error stack as they occur.\n"); PRINTVALSTREAM(rawoutstream, " --follow-symlinks\n"); - PRINTVALSTREAM(rawoutstream, " Follow symbolic links (soft links and external links)\n"); + PRINTVALSTREAM(rawoutstream, + " Follow symbolic links (soft links and external links)\n"); PRINTVALSTREAM(rawoutstream, " to display target object information.\n"); PRINTVALSTREAM(rawoutstream, " Without this option, h5ls identifies a symbolic link\n"); PRINTVALSTREAM(rawoutstream, " as a soft link or external link and prints the value\n"); - PRINTVALSTREAM(rawoutstream, " assigned to the symbolic link; it does not provide any\n"); + PRINTVALSTREAM(rawoutstream, + " assigned to the symbolic link; it does not provide any\n"); PRINTVALSTREAM(rawoutstream, " information regarding the target object or determine\n"); PRINTVALSTREAM(rawoutstream, " whether the link is a dangling link.\n"); PRINTVALSTREAM(rawoutstream, " --no-dangling-links\n"); PRINTVALSTREAM(rawoutstream, " Must be used with --follow-symlinks option;\n"); - PRINTVALSTREAM(rawoutstream, " otherwise, h5ls shows error message and returns an exit\n"); - PRINTVALSTREAM(rawoutstream, " code of 1. \n"); - PRINTVALSTREAM(rawoutstream, " Check for any symbolic links (soft links or external links)\n"); - PRINTVALSTREAM(rawoutstream, " that do not resolve to an existing object (dataset, group,\n"); + PRINTVALSTREAM(rawoutstream, + " otherwise, h5ls shows error message and returns an exit\n"); + PRINTVALSTREAM(rawoutstream, " code of 1.\n"); + PRINTVALSTREAM(rawoutstream, + " Check for any symbolic links (soft links or external links)\n"); + PRINTVALSTREAM(rawoutstream, + " that do not resolve to an existing object (dataset, group,\n"); PRINTVALSTREAM(rawoutstream, " or named datatype).\n"); - PRINTVALSTREAM(rawoutstream, " If any dangling link is found, this situation is treated\n"); + PRINTVALSTREAM(rawoutstream, + " If any dangling link is found, this situation is treated\n"); PRINTVALSTREAM(rawoutstream, " as an error and h5ls returns an exit code of 1.\n"); PRINTVALSTREAM(rawoutstream, " -f, --full Print full path names instead of base names\n"); PRINTVALSTREAM(rawoutstream, " -g, --group Show information about a group, not its contents\n"); @@ -215,6 +218,19 @@ usage (void) PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n"); PRINTVALSTREAM(rawoutstream, " --vfd=DRIVER Use the specified virtual file driver\n"); PRINTVALSTREAM(rawoutstream, " -x, --hexdump Show raw data in hexadecimal format\n"); + PRINTVALSTREAM(rawoutstream, + " --s3-cred=C Supply S3 authentication information to \"ros3\" vfd.\n"); + PRINTVALSTREAM(rawoutstream, + " Accepts tuple of \"(<aws-region>,<access-id>,<access-key>)\".\n"); + PRINTVALSTREAM(rawoutstream, + " If absent or C->\"(,,)\", defaults to no-authentication.\n"); + PRINTVALSTREAM(rawoutstream, " Has no effect if vfd flag not set to \"ros3\".\n"); + PRINTVALSTREAM(rawoutstream, " --hdfs-attrs=A Supply configuration information to Hadoop VFD.\n"); + PRINTVALSTREAM(rawoutstream, " Accepts tuple of (<namenode name>,<namenode port>,\n"); + PRINTVALSTREAM(rawoutstream, " ...<kerberos cache path>,<username>,<buffer size>)\n"); + PRINTVALSTREAM(rawoutstream, + " If absent or A == '(,,,,)', all default values are used.\n"); + PRINTVALSTREAM(rawoutstream, " Has no effect if vfd flag is not 'hdfs'.\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " file/OBJECT\n"); PRINTVALSTREAM(rawoutstream, " Each object consists of an HDF5 file name optionally followed by a\n"); @@ -224,10 +240,14 @@ usage (void) PRINTVALSTREAM(rawoutstream, " \"%%05d\" to open a file family.\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " Deprecated Options\n"); - PRINTVALSTREAM(rawoutstream, " The following options have been deprecated in HDF5. While they remain\n"); - PRINTVALSTREAM(rawoutstream, " available, they have been superseded as indicated and may be removed\n"); - PRINTVALSTREAM(rawoutstream, " from HDF5 in the future. Use the indicated replacement option in all\n"); - PRINTVALSTREAM(rawoutstream, " new work; where possible, existing scripts, et cetera, should also be\n"); + PRINTVALSTREAM(rawoutstream, + " The following options have been deprecated in HDF5. While they remain\n"); + PRINTVALSTREAM(rawoutstream, + " available, they have been superseded as indicated and may be removed\n"); + PRINTVALSTREAM(rawoutstream, + " from HDF5 in the future. Use the indicated replacement option in all\n"); + PRINTVALSTREAM(rawoutstream, + " new work; where possible, existing scripts, et cetera, should also be\n"); PRINTVALSTREAM(rawoutstream, " updated to use the replacement option.\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " -E or --external Follow external links.\n"); @@ -236,76 +256,78 @@ usage (void) PRINTVALSTREAM(rawoutstream, " Replaced by --enable-error-stack.\n"); } - - /*------------------------------------------------------------------------- - * Function: print_string - * - * Purpose: Print a string value by escaping unusual characters. If - * STREAM is null then we only count how large the output would - * be. + * Function: print_string * - * Return: Number of characters printed. - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Print a string value by escaping unusual characters. If + * STREAM is null then we only count how large the output would be. * + * Return: Number of characters printed. *------------------------------------------------------------------------- */ static int print_string(h5tools_str_t *buffer, const char *s, hbool_t escape_spaces) { - int nprint=0; + int nprint = 0; for (/*void*/; s && *s; s++) { switch (*s) { case '"': - if (buffer) h5tools_str_append(buffer, "\\\""); + if (buffer) + h5tools_str_append(buffer, "\\\""); nprint += 2; break; case '\\': - if (buffer) h5tools_str_append(buffer, "\\\\"); + if (buffer) + h5tools_str_append(buffer, "\\\\"); nprint += 2; break; case '\b': - if (buffer) h5tools_str_append(buffer, "\\b"); + if (buffer) + h5tools_str_append(buffer, "\\b"); nprint += 2; break; case '\f': - if (buffer) h5tools_str_append(buffer, "\\f"); + if (buffer) + h5tools_str_append(buffer, "\\f"); nprint += 2; break; case '\n': - if (buffer) h5tools_str_append(buffer, "\\n"); + if (buffer) + h5tools_str_append(buffer, "\\n"); nprint += 2; break; case '\r': - if (buffer) h5tools_str_append(buffer, "\\r"); + if (buffer) + h5tools_str_append(buffer, "\\r"); nprint += 2; break; case '\t': - if (buffer) h5tools_str_append(buffer, "\\t"); + if (buffer) + h5tools_str_append(buffer, "\\t"); nprint += 2; break; case ' ': if (escape_spaces) { - if (buffer) h5tools_str_append(buffer, "\\ "); + if (buffer) + h5tools_str_append(buffer, "\\ "); nprint += 2; } else { - if (buffer) h5tools_str_append(buffer, " "); + if (buffer) + h5tools_str_append(buffer, " "); nprint++; } break; default: if (isprint((int)*s)) { - if (buffer) h5tools_str_append(buffer, "%c", *s); + if (buffer) + h5tools_str_append(buffer, "%c", *s); nprint++; } else { - if (buffer) h5tools_str_append(buffer, "\\%03o", *((const unsigned char*)s)); + if (buffer) + h5tools_str_append(buffer, "\\%03o", *((const unsigned char *)s)); nprint += 4; } break; @@ -314,44 +336,35 @@ print_string(h5tools_str_t *buffer, const char *s, hbool_t escape_spaces) return nprint; } - /*------------------------------------------------------------------------- - * Function: print_obj_name - * - * Purpose: Print an object name and another string. - * - * Return: Success: TRUE + * Function: print_obj_name * - * Failure: FALSE, nothing printed - * - * Programmer: Quincey Koziol - * Tuesday, November 6, 2007 - * - * Modifications: + * Purpose: Print an object name and another string. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static int -print_obj_name(h5tools_str_t *buffer, const iter_t *iter, const char *oname, - const char *s) +print_obj_name(h5tools_str_t *buffer, const iter_t *iter, const char *oname, const char *s) { - static char fullname[NAME_BUF_SIZE]; /* Buffer for file and/or object name */ - const char *name = fullname; /* Pointer to buffer for printing */ - int n; + static char fullname[NAME_BUF_SIZE]; /* Buffer for file and/or object name */ + const char *name = fullname; /* Pointer to buffer for printing */ + int n; - if(show_file_name_g) + if (show_file_name_g) HDsnprintf(fullname, sizeof(fullname), "%s/%s", iter->fname, oname + iter->name_start); else name = oname + iter->name_start; /* Print the object name, either full name or base name */ - if(fullname_g) + if (fullname_g) n = print_string(buffer, name, TRUE); else { - const char *last_sep; /* The location of the last group separator */ + const char *last_sep; /* The location of the last group separator */ /* Find the last component of the path name */ - if(NULL == (last_sep = HDstrrchr(name, '/'))) + if (NULL == (last_sep = HDstrrchr(name, '/'))) last_sep = name; else { last_sep++; @@ -363,161 +376,188 @@ print_obj_name(h5tools_str_t *buffer, const iter_t *iter, const char *oname, return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_native_type - * - * Purpose: Prints the name of a native C data type. - * - * Return: Success: TRUE + * Function: print_native_type * - * Failure: FALSE, nothing printed. - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: - * Robb Matzke, 1999-06-11 - * Added the C9x types, but we still prefer to display the types - * from the C language itself (like `int' vs. `int32_t'). + * Purpose: Prints the name of a native C data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed. *------------------------------------------------------------------------- */ static hbool_t -print_native_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) +print_native_type(h5tools_str_t *buffer, hid_t type, int ind) { - if(!simple_output_g) { - if (H5Tequal(type, H5T_NATIVE_SCHAR)==TRUE) { + if (!simple_output_g) { + if (H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) { h5tools_str_append(buffer, "native signed char"); - } else if (H5Tequal(type, H5T_NATIVE_UCHAR)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) { h5tools_str_append(buffer, "native unsigned char"); - } else if (H5Tequal(type, H5T_NATIVE_INT)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT) == TRUE) { h5tools_str_append(buffer, "native int"); - } else if (H5Tequal(type, H5T_NATIVE_UINT)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT) == TRUE) { h5tools_str_append(buffer, "native unsigned int"); - } else if (H5Tequal(type, H5T_NATIVE_SHORT)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) { h5tools_str_append(buffer, "native short"); - } else if (H5Tequal(type, H5T_NATIVE_USHORT)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) { h5tools_str_append(buffer, "native unsigned short"); - } else if (H5Tequal(type, H5T_NATIVE_LONG)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_LONG) == TRUE) { h5tools_str_append(buffer, "native long"); - } else if (H5Tequal(type, H5T_NATIVE_ULONG)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) { h5tools_str_append(buffer, "native unsigned long"); - } else if (H5Tequal(type, H5T_NATIVE_LLONG)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) { h5tools_str_append(buffer, "native long long"); - } else if (H5Tequal(type, H5T_NATIVE_ULLONG)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) { h5tools_str_append(buffer, "native unsigned long long"); - } else if (H5Tequal(type, H5T_NATIVE_FLOAT)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) { h5tools_str_append(buffer, "native float"); - } else if (H5Tequal(type, H5T_NATIVE_DOUBLE)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) { h5tools_str_append(buffer, "native double"); -#if H5_SIZEOF_LONG_DOUBLE !=0 - } else if (H5Tequal(type, H5T_NATIVE_LDOUBLE)==TRUE) { + } +#if H5_SIZEOF_LONG_DOUBLE != 0 + else if (H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) { h5tools_str_append(buffer, "native long double"); + } #endif - } else if (H5Tequal(type, H5T_NATIVE_INT8)==TRUE) { + else if (H5Tequal(type, H5T_NATIVE_INT8) == TRUE) { h5tools_str_append(buffer, "native int8_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT8) == TRUE) { h5tools_str_append(buffer, "native uint8_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT16) == TRUE) { h5tools_str_append(buffer, "native int16_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT16) == TRUE) { h5tools_str_append(buffer, "native uint16_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT32) == TRUE) { h5tools_str_append(buffer, "native int32_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT32) == TRUE) { h5tools_str_append(buffer, "native uint32_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT64) == TRUE) { h5tools_str_append(buffer, "native int64_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT64) == TRUE) { h5tools_str_append(buffer, "native uint64_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_LEAST8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_LEAST8) == TRUE) { h5tools_str_append(buffer, "native int_least8_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST8) == TRUE) { h5tools_str_append(buffer, "native uint_least8_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_LEAST16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_LEAST16) == TRUE) { h5tools_str_append(buffer, "native int_least16_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST16) == TRUE) { h5tools_str_append(buffer, "native uint_least16_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_LEAST32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_LEAST32) == TRUE) { h5tools_str_append(buffer, "native int_least32_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST32) == TRUE) { h5tools_str_append(buffer, "native uint_least32_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_LEAST64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_LEAST64) == TRUE) { h5tools_str_append(buffer, "native int_least64_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_LEAST64) == TRUE) { h5tools_str_append(buffer, "native uint_least64_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_FAST8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_FAST8) == TRUE) { h5tools_str_append(buffer, "native int_fast8_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_FAST8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_FAST8) == TRUE) { h5tools_str_append(buffer, "native uint_fast8_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_FAST16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_FAST16) == TRUE) { h5tools_str_append(buffer, "native int_fast16_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_FAST16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_FAST16) == TRUE) { h5tools_str_append(buffer, "native uint_fast16_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_FAST32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_FAST32) == TRUE) { h5tools_str_append(buffer, "native int_fast32_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_FAST32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_FAST32) == TRUE) { h5tools_str_append(buffer, "native uint_fast32_t"); - } else if (H5Tequal(type, H5T_NATIVE_INT_FAST64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_INT_FAST64) == TRUE) { h5tools_str_append(buffer, "native int_fast64_t"); - } else if (H5Tequal(type, H5T_NATIVE_UINT_FAST64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_UINT_FAST64) == TRUE) { h5tools_str_append(buffer, "native uint_fast64_t"); - } else if (H5Tequal(type, H5T_NATIVE_B8)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_B8) == TRUE) { h5tools_str_append(buffer, "native 8-bit field"); - } else if (H5Tequal(type, H5T_NATIVE_B16)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_B16) == TRUE) { h5tools_str_append(buffer, "native 16-bit field"); - } else if (H5Tequal(type, H5T_NATIVE_B32)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_B32) == TRUE) { h5tools_str_append(buffer, "native 32-bit field"); - } else if (H5Tequal(type, H5T_NATIVE_B64)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_B64) == TRUE) { h5tools_str_append(buffer, "native 64-bit field"); - } else if (H5Tequal(type, H5T_NATIVE_HSIZE)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_HSIZE) == TRUE) { h5tools_str_append(buffer, "native hsize_t"); - } else if (H5Tequal(type, H5T_NATIVE_HSSIZE)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_HSSIZE) == TRUE) { h5tools_str_append(buffer, "native hssize_t"); - } else if (H5Tequal(type, H5T_NATIVE_HERR)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_HERR) == TRUE) { h5tools_str_append(buffer, "native herr_t"); - } else if (H5Tequal(type, H5T_NATIVE_HBOOL)==TRUE) { + } + else if (H5Tequal(type, H5T_NATIVE_HBOOL) == TRUE) { h5tools_str_append(buffer, "native hbool_t"); - } else { + } + else { return print_int_type(buffer, type, ind); } - } else { + } + else { return print_int_type(buffer, type, ind); } return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_ieee_type - * - * Purpose: Print the name of an IEEE floating-point data type. + * Function: print_ieee_type * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Print the name of an IEEE floating-point data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t -print_ieee_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) +print_ieee_type(h5tools_str_t *buffer, hid_t type, int ind) { - if (H5Tequal(type, H5T_IEEE_F32BE)==TRUE) { + if (H5Tequal(type, H5T_IEEE_F32BE) == TRUE) { h5tools_str_append(buffer, "IEEE 32-bit big-endian float"); } - else if (H5Tequal(type, H5T_IEEE_F32LE)==TRUE) { + else if (H5Tequal(type, H5T_IEEE_F32LE) == TRUE) { h5tools_str_append(buffer, "IEEE 32-bit little-endian float"); } - else if (H5Tequal(type, H5T_IEEE_F64BE)==TRUE) { + else if (H5Tequal(type, H5T_IEEE_F64BE) == TRUE) { h5tools_str_append(buffer, "IEEE 64-bit big-endian float"); } - else if (H5Tequal(type, H5T_IEEE_F64LE)==TRUE) { + else if (H5Tequal(type, H5T_IEEE_F64LE) == TRUE) { h5tools_str_append(buffer, "IEEE 64-bit little-endian float"); } else { @@ -526,43 +566,35 @@ print_ieee_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_precision - * - * Purpose: Prints information on the next line about precision and - * padding if the precision is less than the total data type - * size. + * Function: print_precision * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Prints information on the next line about precision and + * padding if the precision is less than the total data type + * size. * + * Return: void *------------------------------------------------------------------------- */ static void print_precision(h5tools_str_t *buffer, hid_t type, int ind) { - size_t prec; /* precision */ - H5T_pad_t plsb, pmsb; /* lsb and msb padding */ - const char *plsb_s=NULL; /* lsb padding string */ - const char *pmsb_s=NULL; /* msb padding string */ - size_t nbits; /* number of bits */ + size_t prec; /* precision */ + H5T_pad_t plsb, pmsb; /* lsb and msb padding */ + const char *plsb_s = NULL; /* lsb padding string */ + const char *pmsb_s = NULL; /* msb padding string */ + size_t nbits; /* number of bits */ /* If the precision is less than the total size then show the precision * and offset on the following line. Also display the padding * information. */ - if(8 * H5Tget_size(type) != (prec = H5Tget_precision(type))) { - h5tools_str_append(buffer, "\n%*s(%lu bit%s of precision beginning at bit %lu)", - ind, "", (unsigned long)prec, 1 == prec ? "" : "s", - (unsigned long)H5Tget_offset(type)); + if (8 * H5Tget_size(type) != (prec = H5Tget_precision(type))) { + h5tools_str_append(buffer, "\n%*s(%lu bit%s of precision beginning at bit %lu)", ind, "", + (unsigned long)prec, 1 == prec ? "" : "s", (unsigned long)H5Tget_offset(type)); H5Tget_pad(type, &plsb, &pmsb); - if(H5Tget_offset(type) > 0) { - switch(plsb) { + if (H5Tget_offset(type) > 0) { + switch (plsb) { case H5T_PAD_ZERO: plsb_s = "zero"; break; @@ -580,8 +612,8 @@ print_precision(h5tools_str_t *buffer, hid_t type, int ind) break; } } - if((unsigned)H5Tget_offset(type) + prec < 8 * H5Tget_size(type)) { - switch(pmsb) { + if ((unsigned)H5Tget_offset(type) + prec < 8 * H5Tget_size(type)) { + switch (pmsb) { case H5T_PAD_ZERO: pmsb_s = "zero"; break; @@ -603,61 +635,54 @@ print_precision(h5tools_str_t *buffer, hid_t type, int ind) h5tools_str_append(buffer, "\n%*s(", ind, ""); if (plsb_s) { nbits = (unsigned)H5Tget_offset(type); - h5tools_str_append(buffer, "%lu %s bit%s at bit 0", - (unsigned long)nbits, plsb_s, 1 == nbits ? "" : "s"); + h5tools_str_append(buffer, "%lu %s bit%s at bit 0", (unsigned long)nbits, plsb_s, + 1 == nbits ? "" : "s"); } - if (plsb_s && pmsb_s) h5tools_str_append(buffer, ", "); + if (plsb_s && pmsb_s) + h5tools_str_append(buffer, ", "); if (pmsb_s) { nbits = (8 * H5Tget_size(type)) - ((unsigned)H5Tget_offset(type) + prec); - h5tools_str_append(buffer, "%lu %s bit%s at bit %lu", - (unsigned long)nbits, pmsb_s, 1 == nbits ? "" : "s", - (unsigned long)(8 * H5Tget_size(type) - nbits)); + h5tools_str_append(buffer, "%lu %s bit%s at bit %lu", (unsigned long)nbits, pmsb_s, + 1 == nbits ? "" : "s", (unsigned long)(8 * H5Tget_size(type) - nbits)); } h5tools_str_append(buffer, ")"); } } } - /*------------------------------------------------------------------------- - * Function: print_int_type - * - * Purpose: Print the name of an integer data type. Common information - * like number of bits, byte order, and sign scheme appear on - * the first line. Additional information might appear in - * parentheses on the following lines. + * Function: print_int_type * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Print the name of an integer data type. Common information + * like number of bits, byte order, and sign scheme appear on + * the first line. Additional information might appear in + * parentheses on the following lines. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_int_type(h5tools_str_t *buffer, hid_t type, int ind) { H5T_order_t order; /* byte order value */ - const char *order_s=NULL; /* byte order string */ + const char *order_s = NULL; /* byte order string */ H5T_sign_t sign; /* sign scheme value */ - const char *sign_s=NULL; /* sign scheme string */ + const char *sign_s = NULL; /* sign scheme string */ - if (H5T_INTEGER!=H5Tget_class(type)) return FALSE; + if (H5T_INTEGER != H5Tget_class(type)) + return FALSE; /* Byte order */ - if (H5Tget_size(type)>1) { + if (H5Tget_size(type) > 1) { order = H5Tget_order(type); - if (H5T_ORDER_LE==order) { + if (H5T_ORDER_LE == order) { order_s = " little-endian"; } - else if (H5T_ORDER_BE==order) { + else if (H5T_ORDER_BE == order) { order_s = " big-endian"; } - else if (H5T_ORDER_VAX==order) { + else if (H5T_ORDER_VAX == order) { order_s = " mixed-endian"; } else { @@ -669,11 +694,11 @@ print_int_type(h5tools_str_t *buffer, hid_t type, int ind) } /* Sign */ - if ((sign=H5Tget_sign(type))>=0) { - if (H5T_SGN_NONE==sign) { + if ((sign = H5Tget_sign(type)) >= 0) { + if (H5T_SGN_NONE == sign) { sign_s = " unsigned"; } - else if (H5T_SGN_2==sign) { + else if (H5T_SGN_2 == sign) { sign_s = ""; } else { @@ -686,55 +711,48 @@ print_int_type(h5tools_str_t *buffer, hid_t type, int ind) /* Print size, order, and sign on first line, precision and padding * information on the subsequent lines */ - h5tools_str_append(buffer, "%lu-bit%s%s integer", - (unsigned long)(8*H5Tget_size(type)), order_s, sign_s); + h5tools_str_append(buffer, "%lu-bit%s%s integer", (unsigned long)(8 * H5Tget_size(type)), order_s, + sign_s); print_precision(buffer, type, ind); return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_float_type + * Function: print_float_type * - * Purpose: Print info about a floating point data type. - * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Print info about a floating point data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_float_type(h5tools_str_t *buffer, hid_t type, int ind) { H5T_order_t order; /* byte order value */ - const char *order_s=NULL; /* byte order string */ + const char *order_s = NULL; /* byte order string */ size_t spos; /* sign bit position */ size_t esize, epos; /* exponent size and position */ size_t msize, mpos; /* significand size and position */ size_t ebias; /* exponent bias */ H5T_norm_t norm; /* significand normalization */ - const char *norm_s=NULL; /* normalization string */ + const char *norm_s = NULL; /* normalization string */ H5T_pad_t pad; /* internal padding value */ - const char *pad_s=NULL; /* internal padding string */ + const char *pad_s = NULL; /* internal padding string */ - if (H5T_FLOAT!=H5Tget_class(type)) return FALSE; + if (H5T_FLOAT != H5Tget_class(type)) + return FALSE; /* Byte order */ - if (H5Tget_size(type)>1) { + if (H5Tget_size(type) > 1) { order = H5Tget_order(type); - if (H5T_ORDER_LE==order) { + if (H5T_ORDER_LE == order) { order_s = " little-endian"; } - else if (H5T_ORDER_BE==order) { + else if (H5T_ORDER_BE == order) { order_s = " big-endian"; } - else if (H5T_ORDER_VAX==order) { + else if (H5T_ORDER_VAX == order) { order_s = " mixed-endian"; } else { @@ -747,14 +765,13 @@ print_float_type(h5tools_str_t *buffer, hid_t type, int ind) /* Print size and byte order on first line, precision and padding on * subsequent lines. */ - h5tools_str_append(buffer, "%lu-bit%s floating-point", - (unsigned long)(8*H5Tget_size(type)), order_s); + h5tools_str_append(buffer, "%lu-bit%s floating-point", (unsigned long)(8 * H5Tget_size(type)), order_s); print_precision(buffer, type, ind); /* Print sizes, locations, and other information about each field */ - H5Tget_fields (type, &spos, &epos, &esize, &mpos, &msize); + H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize); ebias = H5Tget_ebias(type); - norm = H5Tget_norm(type); + norm = H5Tget_norm(type); switch (norm) { case H5T_NORM_IMPLIED: norm_s = ", msb implied"; @@ -768,20 +785,18 @@ print_float_type(h5tools_str_t *buffer, hid_t type, int ind) case H5T_NORM_ERROR: norm_s = ", unknown normalization"; break; - default: - ; - break; + default:; + break; } - h5tools_str_append(buffer, "\n%*s(significant for %lu bit%s at bit %lu%s)", ind, "", - (unsigned long)msize, 1==msize?"":"s", (unsigned long)mpos, - norm_s); - h5tools_str_append(buffer, "\n%*s(exponent for %lu bit%s at bit %lu, bias is 0x%lx)", - ind, "", (unsigned long)esize, 1==esize?"":"s", - (unsigned long)epos, (unsigned long)ebias); + h5tools_str_append(buffer, "\n%*s(significant for %lu bit%s at bit %lu%s)", ind, "", (unsigned long)msize, + 1 == msize ? "" : "s", (unsigned long)mpos, norm_s); + h5tools_str_append(buffer, "\n%*s(exponent for %lu bit%s at bit %lu, bias is 0x%lx)", ind, "", + (unsigned long)esize, 1 == esize ? "" : "s", (unsigned long)epos, + (unsigned long)ebias); h5tools_str_append(buffer, "\n%*s(sign bit at %lu)", ind, "", (unsigned long)spos); /* Display internal padding */ - if (1+esize+msize<H5Tget_precision(type)) { + if ((1 + esize + msize) < H5Tget_precision(type)) { pad = H5Tget_inpad(type); switch (pad) { case H5T_PAD_ZERO: @@ -797,94 +812,77 @@ print_float_type(h5tools_str_t *buffer, hid_t type, int ind) case H5T_NPAD: pad_s = "unknown"; break; - default: - ; - break; + default:; + break; } h5tools_str_append(buffer, "\n%*s(internal padding bits are %s)", ind, "", pad_s); } return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_cmpd_type - * - * Purpose: Print info about a compound data type. - * - * Return: Success: TRUE + * Function: print_cmpd_type * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 + * Purpose: Print info about a compound data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_cmpd_type(h5tools_str_t *buffer, hid_t type, int ind) { - char *name=NULL; /* member name */ - size_t size; /* total size of type in bytes */ - hid_t subtype; /* member data type */ - int nmembs; /* number of members */ - int n; /* miscellaneous counters */ - unsigned i; /* miscellaneous counters */ - - if(H5T_COMPOUND != H5Tget_class(type)) + char * name = NULL; /* member name */ + size_t size; /* total size of type in bytes */ + hid_t subtype; /* member data type */ + int nmembs; /* number of members */ + int n; /* miscellaneous counters */ + unsigned i; /* miscellaneous counters */ + + if (H5T_COMPOUND != H5Tget_class(type)) return FALSE; - if((nmembs = H5Tget_nmembers(type)) < 0) + if ((nmembs = H5Tget_nmembers(type)) < 0) return FALSE; h5tools_str_append(buffer, "struct {"); - for(i = 0; i < (unsigned)nmembs; i++) { - + for (i = 0; i < (unsigned)nmembs; i++) { /* Name and offset */ name = H5Tget_member_name(type, i); - h5tools_str_append(buffer, "\n%*s\"", ind+4, ""); + h5tools_str_append(buffer, "\n%*s\"", ind + 4, ""); n = print_string(buffer, name, FALSE); - h5tools_str_append(buffer, "\"%*s +%-4lu ", MAX(0, 16-n), "", - (unsigned long)H5Tget_member_offset(type, i)); + h5tools_str_append(buffer, "\"%*s +%-4lu ", MAX(0, 16 - n), "", + (unsigned long)H5Tget_member_offset(type, i)); H5free_memory(name); /* Member's type */ subtype = H5Tget_member_type(type, i); - print_type(buffer, subtype, ind+4); + print_type(buffer, subtype, ind + 4); H5Tclose(subtype); } size = H5Tget_size(type); - h5tools_str_append(buffer, "\n%*s} %lu byte%s", - ind, "", (unsigned long)size, 1==size?"":"s"); + h5tools_str_append(buffer, "\n%*s} %lu byte%s", ind, "", (unsigned long)size, 1 == size ? "" : "s"); return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_enum_type - * - * Purpose: Print info about an enumeration data type. - * - * Return: Success: TRUE + * Function: print_enum_type * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Wednesday, December 23, 1998 - * - * Modifications: + * Purpose: Print info about an enumeration data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) { - int nmembs; /* number of members */ - hid_t super; /* enum base integer type */ + int nmembs; /* number of members */ + hid_t super; /* enum base integer type */ - if(H5T_ENUM != H5Tget_class(type)) + if (H5T_ENUM != H5Tget_class(type)) return FALSE; - if((nmembs = H5Tget_nmembers(type)) < 0) + if ((nmembs = H5Tget_nmembers(type)) < 0) return FALSE; super = H5Tget_super(type); @@ -892,21 +890,21 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) print_type(buffer, super, ind + 4); h5tools_str_append(buffer, " {"); - if(nmembs > 0) { - char **name; /* member names */ - unsigned char *value; /* value array */ - hid_t native = -1; /* native integer data type */ - size_t dst_size; /* destination value type size */ - unsigned i; /* miscellaneous counters */ + if (nmembs > 0) { + char ** name; /* member names */ + unsigned char *value; /* value array */ + hid_t native = H5I_INVALID_HID; /* native integer data type */ + size_t dst_size; /* destination value type size */ + unsigned i; /* miscellaneous counters */ /* Determine what data type to use for the native values. To simplify * things we entertain three possibilities: * 1. long long -- the largest native signed integer * 2. unsigned long long -- the largest native unsigned integer * 3. raw format */ - if(H5Tget_size(type) <= sizeof(long long)) { + if (H5Tget_size(type) <= sizeof(long long)) { dst_size = sizeof(long long); - if(H5T_SGN_NONE == H5Tget_sign(type)) + if (H5T_SGN_NONE == H5Tget_sign(type)) native = H5T_NATIVE_ULLONG; else native = H5T_NATIVE_LLONG; @@ -915,21 +913,22 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) dst_size = H5Tget_size(type); /* Get the names and raw values of all members */ - name = (char **)HDcalloc((size_t)nmembs, sizeof(char *)); + name = (char **)HDcalloc((size_t)nmembs, sizeof(char *)); value = (unsigned char *)HDcalloc((size_t)nmembs, MAX(H5Tget_size(type), dst_size)); - for(i = 0; i < (unsigned)nmembs; i++) { + for (i = 0; i < (unsigned)nmembs; i++) { name[i] = H5Tget_member_name(type, i); H5Tget_member_value(type, i, value + i * H5Tget_size(type)); } /* Convert values to native data type */ - if(native > 0) - if(H5Tconvert(super, native, (size_t)nmembs, value, NULL, H5P_DEFAULT) < 0) { + if (native > 0) + if (H5Tconvert(super, native, (size_t)nmembs, value, NULL, H5P_DEFAULT) < 0) { /* Release resources */ - for(i = 0; i < (unsigned)nmembs; i++) + for (i = 0; i < (unsigned)nmembs; i++) H5free_memory(name[i]); HDfree(name); HDfree(value); + H5Tclose(super); return FALSE; } @@ -938,44 +937,43 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) /*not implemented yet*/ /* Print members */ - for(i = 0; i < (unsigned)nmembs; i++) { - unsigned char *copy; /* a pointer to value array */ - int nchars; /* number of output characters */ + for (i = 0; i < (unsigned)nmembs; i++) { + unsigned char *copy; /* a pointer to value array */ + int nchars; /* number of output characters */ - h5tools_str_append(buffer, "\n%*s", ind+4, ""); + h5tools_str_append(buffer, "\n%*s", ind + 4, ""); nchars = print_string(buffer, name[i], TRUE); h5tools_str_append(buffer, "%*s = ", MAX(0, 16 - nchars), ""); - if(native < 0) { + if (native < 0) { size_t j; h5tools_str_append(buffer, "0x"); - for(j = 0; j < dst_size; j++) - h5tools_str_append(buffer, "%02x", value[i*dst_size+j]); + for (j = 0; j < dst_size; j++) + h5tools_str_append(buffer, "%02x", value[i * dst_size + j]); } - else if(H5T_SGN_NONE == H5Tget_sign(native)) { + else if (H5T_SGN_NONE == H5Tget_sign(native)) { /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size" *strangely, unless use another pointer "copy".*/ copy = value + i * dst_size; - h5tools_str_append(buffer, HSIZE_T_FORMAT, *((unsigned long long*)((void*)copy))); + h5tools_str_append(buffer, HSIZE_T_FORMAT, *((unsigned long long *)((void *)copy))); } else { /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size" *strangely, unless use another pointer "copy".*/ copy = value + i * dst_size; - h5tools_str_append(buffer, "%"H5_PRINTF_LL_WIDTH"d", - *((long long*)((void*)copy))); + h5tools_str_append(buffer, "%" H5_PRINTF_LL_WIDTH "d", *((long long *)((void *)copy))); } } /* Release resources */ - for(i = 0; i < (unsigned)nmembs; i++) + for (i = 0; i < (unsigned)nmembs; i++) H5free_memory(name[i]); HDfree(name); HDfree(value); } else - h5tools_str_append(buffer, "\n%*s <empty>", ind+4, ""); + h5tools_str_append(buffer, "\n%*s <empty>", ind + 4, ""); h5tools_str_append(buffer, "\n%*s}", ind, ""); @@ -984,32 +982,25 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_string_type - * - * Purpose: Print information about a string data type. - * - * Return: Success: TRUE + * Function: print_string_type * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: Print information about a string data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_string_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) { - H5T_str_t pad; - const char *pad_s=NULL; + H5T_str_t pad; + const char *pad_s = NULL; H5T_cset_t cset; - const char *cset_s=NULL; + const char *cset_s = NULL; - if (H5T_STRING!=H5Tget_class(type)) return FALSE; + if (H5T_STRING != H5Tget_class(type)) + return FALSE; /* Padding */ pad = H5Tget_strpad(type); @@ -1039,9 +1030,8 @@ print_string_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) case H5T_STR_ERROR: pad_s = "unknown-format"; break; - default: - ; - break; + default:; + break; } /* Character set */ @@ -1070,9 +1060,8 @@ print_string_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) case H5T_CSET_ERROR: cset_s = "unknown-character-set"; break; - default: - ; - break; + default:; + break; } if (H5Tis_variable_str(type)) { @@ -1085,72 +1074,55 @@ print_string_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_reference_type - * - * Purpose: Prints information about a reference data type. + * Function: print_reference_type * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: - * Robb Matzke, 1999-06-04 - * Knows about object and dataset region references. + * Purpose: Prints information about a reference data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_reference_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) { - if (H5T_REFERENCE!=H5Tget_class(type)) return FALSE; + if (H5T_REFERENCE != H5Tget_class(type)) + return FALSE; - if (H5Tequal(type, H5T_STD_REF_OBJ)==TRUE) { + if (H5Tequal(type, H5T_STD_REF_OBJ) == TRUE) { h5tools_str_append(buffer, "object reference"); } - else if (H5Tequal(type, H5T_STD_REF_DSETREG)==TRUE) { + else if (H5Tequal(type, H5T_STD_REF_DSETREG) == TRUE) { h5tools_str_append(buffer, "dataset region reference"); } else { - h5tools_str_append(buffer, "%lu-byte unknown reference", - (unsigned long)H5Tget_size(type)); + h5tools_str_append(buffer, "%lu-byte unknown reference", (unsigned long)H5Tget_size(type)); } return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_opaque_type + * Function: print_opaque_type * - * Purpose: Prints information about an opaque data type. - * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Robb Matzke - * Monday, June 7, 1999 - * - * Modifications: + * Purpose: Prints information about an opaque data type. * + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_opaque_type(h5tools_str_t *buffer, hid_t type, int ind) { - char *tag; + char * tag; size_t size; - if (H5T_OPAQUE!=H5Tget_class(type)) return FALSE; + if (H5T_OPAQUE != H5Tget_class(type)) + return FALSE; size = H5Tget_size(type); h5tools_str_append(buffer, "%lu-byte opaque type", (unsigned long)size); - if ((tag=H5Tget_tag(type))) { + if ((tag = H5Tget_tag(type))) { h5tools_str_append(buffer, "\n%*s(tag = \"", ind, ""); print_string(buffer, tag, FALSE); h5tools_str_append(buffer, "\")"); @@ -1159,58 +1131,45 @@ print_opaque_type(h5tools_str_t *buffer, hid_t type, int ind) return TRUE; } - /*------------------------------------------------------------------------- * Function: print_vlen_type * * Purpose: Print information about a variable-length type * * Return: Success: TRUE - * * Failure: FALSE - * - * Programmer: Robb Matzke - * Friday, December 1, 2000 - * - * Modifications: *------------------------------------------------------------------------- */ static hbool_t print_vlen_type(h5tools_str_t *buffer, hid_t type, int ind) { - hid_t super; + hid_t super; - if (H5T_VLEN!=H5Tget_class(type)) return FALSE; + if (H5T_VLEN != H5Tget_class(type)) + return FALSE; - h5tools_str_append(buffer, "variable length of\n%*s", ind+4, ""); + h5tools_str_append(buffer, "variable length of\n%*s", ind + 4, ""); super = H5Tget_super(type); - print_type(buffer, super, ind+4); + print_type(buffer, super, ind + 4); H5Tclose(super); return TRUE; } - /*--------------------------------------------------------------------------- * Purpose: Print information about an array type * * Return: Success: TRUE - * * Failure: FALSE - * - * Programmer: Robb Matzke - * Thursday, January 31, 2002 - * - * Modifications: *--------------------------------------------------------------------------- */ static hbool_t print_array_type(h5tools_str_t *buffer, hid_t type, int ind) { - hid_t super; - int ndims, i; - hsize_t *dims=NULL; + hid_t super; + int ndims, i; + hsize_t *dims = NULL; - if (H5T_ARRAY!=H5Tget_class(type)) + if (H5T_ARRAY != H5Tget_class(type)) return FALSE; ndims = H5Tget_array_ndims(type); if (ndims) { @@ -1218,8 +1177,8 @@ print_array_type(h5tools_str_t *buffer, hid_t type, int ind) H5Tget_array_dims2(type, dims); /* Print dimensions */ - for (i=0; i<ndims; i++) - h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT , i?",":"[", dims[i]); + for (i = 0; i < ndims; i++) + h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, i ? "," : "[", dims[i]); h5tools_str_append(buffer, "]"); HDfree(dims); @@ -1227,166 +1186,233 @@ print_array_type(h5tools_str_t *buffer, hid_t type, int ind) else h5tools_str_append(buffer, " [SCALAR]\n", rawoutstream); - /* Print parent type */ h5tools_str_append(buffer, " "); super = H5Tget_super(type); - print_type(buffer, super, ind+4); + print_type(buffer, super, ind + 4); H5Tclose(super); return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_bitfield_type + * Function: print_bitfield_type * - * Purpose: Print information about a bitfield type. + * Purpose: Print information about a bitfield type. * - * Return: Success: TRUE - * - * Failure: FALSE, nothing printed - * - * Programmer: Pedro Vicente - * Tuesday, May 20, 2003 - * - * Modifications: - * Robb Matzke, LLNL 2003-06-05 - * Generalized Pedro's original if/then/else. Also display - * precision/offset information. + * Return: Success: TRUE + * Failure: FALSE, nothing printed *------------------------------------------------------------------------- */ static hbool_t print_bitfield_type(h5tools_str_t *buffer, hid_t type, int ind) { H5T_order_t order; /* byte order value */ - const char *order_s=NULL; /* byte order string */ + const char *order_s = NULL; /* byte order string */ - if (H5T_BITFIELD!=H5Tget_class(type)) return FALSE; - if (H5Tget_size(type)>1) { + if (H5T_BITFIELD != H5Tget_class(type)) + return FALSE; + if (H5Tget_size(type) > 1) { order = H5Tget_order(type); - if (H5T_ORDER_LE==order) { + if (H5T_ORDER_LE == order) { order_s = " little-endian"; - } else if (H5T_ORDER_BE==order) { + } + else if (H5T_ORDER_BE == order) { order_s = " big-endian"; - } else if (H5T_ORDER_VAX==order) { + } + else if (H5T_ORDER_VAX == order) { order_s = " mixed-endian"; - } else { + } + else { order_s = "unknown-byte-order"; } - } else { + } + else { order_s = ""; } - h5tools_str_append(buffer, "%lu-bit%s bitfield", - (unsigned long)(8*H5Tget_size(type)), order_s); + h5tools_str_append(buffer, "%lu-bit%s bitfield", (unsigned long)(8 * H5Tget_size(type)), order_s); print_precision(buffer, type, ind); return TRUE; } - /*------------------------------------------------------------------------- - * Function: print_type - * - * Purpose: Prints a data type definition. The definition is printed - * without any leading space or trailing line-feed (although - * there might be line-feeds inside the type definition). The - * first line is assumed to have IND characters before it on - * the same line (printed by the caller). + * Function: print_type * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: - * Robb Matzke, 1999-06-11 - * Prints the OID of shared data types. + * Purpose: Prints a data type definition. The definition is printed + * without any leading space or trailing line-feed (although + * there might be line-feeds inside the type definition). The + * first line is assumed to have IND characters before it on + * the same line (printed by the caller). + * Prints the OID of shared data types. * + * Return: void *------------------------------------------------------------------------- */ static void print_type(h5tools_str_t *buffer, hid_t type, int ind) { - H5T_class_t data_class = H5Tget_class(type); + H5T_class_t data_class = H5Tget_class(type); /* Bad data type */ - if (type<0) { - h5tools_str_append(buffer,"<ERROR>"); + if (type < 0) { + h5tools_str_append(buffer, "<ERROR>"); return; } /* Shared? If so then print the type's OID */ - if(H5Tcommitted(type)) { - H5O_info_t oi; + if (H5Tcommitted(type)) { + H5O_info_t oi; - if(H5Oget_info(type, &oi) >= 0) - h5tools_str_append(buffer,"shared-%lu:"H5_PRINTF_HADDR_FMT" ", - oi.fileno, oi.addr); + if (H5Oget_info(type, &oi) >= 0) + h5tools_str_append(buffer, "shared-%lu:" H5_PRINTF_HADDR_FMT " ", oi.fileno, oi.addr); else - h5tools_str_append(buffer,"shared "); + h5tools_str_append(buffer, "shared "); } /* end if */ /* Print the type */ - if(print_native_type(buffer, type, ind) || - print_ieee_type(buffer, type, ind) || - print_cmpd_type(buffer, type, ind) || - print_enum_type(buffer, type, ind) || - print_string_type(buffer, type, ind) || - print_reference_type(buffer, type, ind) || - print_vlen_type(buffer, type, ind) || - print_array_type(buffer, type, ind) || - print_opaque_type(buffer, type, ind) || - print_bitfield_type(buffer, type, ind)) + if (print_native_type(buffer, type, ind) || print_ieee_type(buffer, type, ind) || + print_cmpd_type(buffer, type, ind) || print_enum_type(buffer, type, ind) || + print_string_type(buffer, type, ind) || print_reference_type(buffer, type, ind) || + print_vlen_type(buffer, type, ind) || print_array_type(buffer, type, ind) || + print_opaque_type(buffer, type, ind) || print_bitfield_type(buffer, type, ind)) return; /* Unknown type */ - h5tools_str_append(buffer,"%lu-byte class-%u unknown", - (unsigned long)H5Tget_size(type), (unsigned)data_class); + h5tools_str_append(buffer, "%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), + (unsigned)data_class); } - -/*------------------------------------------------------------------------- - * Function: dump_dataset_values - * - * Purpose: Prints all values of a dataset. +/* * - * Return: void + */ +static void +dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, + hid_t f_type, void *ref_buf, int ndims) +{ + hid_t region_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + size_t nsize; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ + size_t ncols = 80; /* available output width */ + int i; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t datactx; /* print context */ + unsigned char * mem = (unsigned char *)ref_buf; + + H5TOOLS_START_DEBUG(""); + + nsize = H5Tget_size(f_type); + datactx = *ctx; /* print context */ + /* Assume entire data space to be printed */ + if (datactx.ndims > 0) + for (i = 0; (unsigned)i < datactx.ndims; i++) + datactx.p_min_idx[i] = 0; + datactx.need_prefix = TRUE; + + HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + for (i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { + void *memref = mem + i * nsize; + + H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos); + + datactx.need_prefix = TRUE; + h5tools_str_reset(&buffer); + H5TOOLS_DEBUG("reference loop - h5tools_str_sprint"); + h5tools_str_sprint(&buffer, info, container, f_type, memref, &datactx); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, + (hsize_t)ndims); + + /* region data */ + if (!h5tools_is_zero(memref, H5Tget_size(f_type))) { + if ((region_id = H5Rdereference(container, H5R_DATASET_REGION, memref)) >= 0) { + if ((region_space = H5Rget_region(container, H5R_DATASET_REGION, memref)) >= 0) { + H5S_sel_type region_type; + + region_type = H5Sget_select_type(region_space); + if (region_type == H5S_SEL_POINTS) { + /* Print point information */ + H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION"); + h5tools_dump_region_data_points(region_space, region_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); + } + else if (region_type == H5S_SEL_HYPERSLABS) { + /* Print block information */ + H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION"); + h5tools_dump_region_data_blocks(region_space, region_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); + } + else + H5TOOLS_INFO("invalid region type"); + if (H5Sclose(region_space) < 0) + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION failed"); + } /* end if (region_space >= 0) */ + else + H5TOOLS_INFO("H5Rget_region H5R_DATASET_REGION failed"); + if (H5Dclose(region_id) < 0) + H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION failed"); + } /* if (region_id >= 0) */ + else { + /* if (region_id < 0) - could mean that no reference was written do not throw failure */ + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, + H5E_tools_min_id_g, "H5Rdereference failed"); + } + } /* end if (h5tools_is_zero(... */ + + H5TOOLS_DEBUG("finished reference loop:%d", i); + } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */ + + h5tools_str_close(&buffer); + + PRINTVALSTREAM(stream, "\n"); + + H5TOOLS_ENDDEBUG(""); +} + +/*------------------------------------------------------------------------- + * Function: dump_dataset_values * - * Programmer: Robb Matzke - * Tuesday, July 21, 1998 + * Purpose: Prints all values of a dataset. * - * Modifications: - * Robb Matzke, 1999-09-27 - * Understands the simple_output_g switch which causes data to - * be displayed in a more machine-readable format. + * Return: void *------------------------------------------------------------------------- */ static void dump_dataset_values(hid_t dset) { - char string_prefix[64]; - static char fmt_double[16]; - static char fmt_float[16]; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t outputformat; - h5tool_format_t *info = &ls_dataformat; - - hid_t f_type = H5Dget_type(dset); - size_t size = H5Tget_size(f_type); + hid_t f_type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; + int ndims; + size_t i; + size_t nsize; + char string_prefix[64]; + static char fmt_double[16]; + static char fmt_float[16]; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t outputformat; + h5tool_format_t * info = &ls_dataformat; + unsigned char * region_buf = NULL; + + H5TOOLS_START_DEBUG(""); + + f_type = H5Dget_type(dset); + space = H5Dget_space(dset); + nsize = H5Tget_size(f_type); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); - outputformat = *info; - outputformat.line_1st = NULL; + outputformat = *info; + outputformat.line_1st = NULL; + outputformat.idx_fmt = ""; if (simple_output_g) { - outputformat.idx_fmt = ""; - outputformat.line_per_line = 1; + outputformat.line_per_line = 1; outputformat.line_multi_new = 0; - outputformat.line_pre = " "; - outputformat.line_cont = " "; + outputformat.line_pre = " "; + outputformat.line_cont = " "; outputformat.arr_pre = ""; outputformat.arr_suf = ""; @@ -1398,11 +1424,11 @@ dump_dataset_values(hid_t dset) } outputformat.cmpd_sep = " "; - if (label_g) outputformat.cmpd_name = "%s="; + if (label_g) + outputformat.cmpd_name = "%s="; - outputformat.elmt_suf1 = " "; + outputformat.elmt_suf1 = " "; outputformat.str_locale = ESCAPE_HTML; - } else { if (no_line_wrap_g) { @@ -1411,9 +1437,10 @@ dump_dataset_values(hid_t dset) else { outputformat.line_ncols = (unsigned)width_g; } - if (label_g) outputformat.cmpd_name = "%s="; - outputformat.line_pre = " %s "; - outputformat.line_cont = " %s "; + if (label_g) + outputformat.cmpd_name = "%s="; + outputformat.line_pre = " %s "; + outputformat.line_cont = " %s "; outputformat.str_repeat = 8; outputformat.arr_pre = NULL; @@ -1441,10 +1468,10 @@ dump_dataset_values(hid_t dset) * command line switch was given. */ outputformat.raw = TRUE; } - else if (string_g && 1==size && H5T_INTEGER==H5Tget_class(f_type)) { + else if (string_g && H5Tget_size(f_type) == 1 && (H5Tget_class(f_type) == H5T_INTEGER)) { /* Print 1-byte integer data as an ASCI character string instead of * integers if the `-s' or `--string' command-line option was given. */ - outputformat.ascii = TRUE; + outputformat.ascii = TRUE; outputformat.elmt_suf1 = ""; outputformat.elmt_suf2 = ""; HDsnprintf(string_prefix, sizeof(string_prefix), "%s\"", outputformat.line_pre); @@ -1453,247 +1480,379 @@ dump_dataset_values(hid_t dset) } info = &outputformat; - ctx.indent_level = 2; - ctx.cur_column = (size_t)curr_pos; + ctx.indent_level = 1; + ctx.cur_column = (size_t)curr_pos; /* Print all the values. */ h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " Data:\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, + (hsize_t)0); + ctx.need_prefix = TRUE; - ctx.cur_column = (size_t)curr_pos; - if (h5tools_dump_dset(rawoutstream, info, &ctx, dset, NULL) < 0) { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Unable to print data."); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - } + ctx.cur_column = (size_t)curr_pos; + if (H5Tget_class(f_type) == H5T_REFERENCE) { + H5TOOLS_DEBUG("reference class type"); + if (!H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) { + H5TOOLS_GOTO_DONE_NO_RET(); + } + ndims = (int)H5Sget_simple_extent_npoints(space); + H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); + + /* Assume entire data space to be printed */ + if (ctx.ndims > 0) + for (i = 0; i < (size_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + + H5Sget_simple_extent_dims(space, total_size, NULL); + if (ctx.ndims > 0) + init_acc_pos(&ctx, total_size); + ctx.need_prefix = TRUE; + + if (NULL != (region_buf = (void *)HDcalloc(nsize, (size_t)ndims))) { + H5TOOLS_DEBUG("H5Dread reference read"); + if (H5Dread(dset, f_type, H5S_ALL, H5S_ALL, H5P_DEFAULT, region_buf) < 0) { + HDfree(region_buf); + H5TOOLS_INFO("H5Dread reference failed"); + H5TOOLS_GOTO_DONE_NO_RET(); + } + dump_reference(rawoutstream, info, &ctx, dset, f_type, region_buf, ndims); + HDfree(region_buf); + } + } + else { + if (h5tools_dump_dset(rawoutstream, info, &ctx, dset) < 0) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Unable to print data."); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); + } + } +done: + H5Sclose(space); H5Tclose(f_type); h5tools_str_close(&buffer); PRINTVALSTREAM(rawoutstream, "\n"); + + H5TOOLS_ENDDEBUG(""); } - /*------------------------------------------------------------------------- - * Function: list_attr + * Function: dump_attribute_values * - * Purpose: Prints information about attributes. - * - * Return: Success: 0 + * Purpose: Prints all values of a attribute. * - * Failure: -1 - * - * Programmer: Robb Matzke - * Friday, June 5, 1998 + * Return: void + *------------------------------------------------------------------------- + */ +static void +dump_attribute_values(hid_t attr) +{ + hid_t f_type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; + int ndims; + size_t i; + size_t nsize; + char string_prefix[64]; + static char fmt_double[16]; + static char fmt_float[16]; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t outputformat; + h5tool_format_t * info = &ls_dataformat; + unsigned char * region_buf = NULL; + + H5TOOLS_START_DEBUG(""); + + f_type = H5Aget_type(attr); + space = H5Aget_space(attr); + nsize = H5Tget_size(f_type); + + HDmemset(&ctx, 0, sizeof(ctx)); + HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + + outputformat = *info; + outputformat.line_1st = NULL; + outputformat.idx_fmt = ""; + if (simple_output_g) { + outputformat.line_per_line = 1; + outputformat.line_multi_new = 0; + outputformat.line_pre = " "; + outputformat.line_cont = " "; + + outputformat.arr_pre = ""; + outputformat.arr_suf = ""; + outputformat.arr_sep = " "; + + if (!label_g) { + outputformat.cmpd_pre = ""; + outputformat.cmpd_suf = ""; + } + outputformat.cmpd_sep = " "; + + if (label_g) + outputformat.cmpd_name = "%s="; + + outputformat.elmt_suf1 = " "; + outputformat.str_locale = ESCAPE_HTML; + } + else { + if (no_line_wrap_g) { + outputformat.line_per_line = 1; + } + else { + outputformat.line_ncols = (unsigned)width_g; + } + if (label_g) + outputformat.cmpd_name = "%s="; + outputformat.line_pre = " %s "; + outputformat.line_cont = " %s "; + outputformat.str_repeat = 8; + + outputformat.arr_pre = NULL; + outputformat.arr_suf = NULL; + outputformat.arr_sep = NULL; + + outputformat.cmpd_pre = NULL; + outputformat.cmpd_suf = NULL; + outputformat.cmpd_sep = NULL; + + outputformat.vlen_sep = NULL; + outputformat.vlen_pre = NULL; + outputformat.vlen_suf = NULL; + outputformat.vlen_end = NULL; + } + outputformat.arr_linebreak = 0; + /* Floating point types should display full precision */ + HDsnprintf(fmt_float, sizeof(fmt_float), "%%1.%dg", FLT_DIG); + outputformat.fmt_float = fmt_float; + HDsnprintf(fmt_double, sizeof(fmt_double), "%%1.%dg", DBL_DIG); + outputformat.fmt_double = fmt_double; + + if (hexdump_g) { + /* Print all data in hexadecimal format if the `-x' or `--hexdump' + * command line switch was given. */ + outputformat.raw = TRUE; + } + else if (string_g && H5Tget_size(f_type) == 1 && (H5Tget_class(f_type) == H5T_INTEGER)) { + /* Print 1-byte integer data as an ASCI character string instead of + * integers if the `-s' or `--string' command-line option was given. */ + outputformat.ascii = TRUE; + outputformat.elmt_suf1 = ""; + outputformat.elmt_suf2 = ""; + HDsnprintf(string_prefix, sizeof(string_prefix), "%s\"", outputformat.line_pre); + outputformat.line_pre = string_prefix; + outputformat.line_suf = "\""; + } + info = &outputformat; + + ctx.indent_level = 2; + ctx.cur_column = (size_t)curr_pos; + + /* Print all the values. */ + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Data:\n"); + + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, + (hsize_t)0); + + ctx.need_prefix = TRUE; + ctx.cur_column = (size_t)curr_pos; + if (H5Tget_class(f_type) == H5T_REFERENCE) { + H5TOOLS_DEBUG("reference class type"); + if (!H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) { + H5TOOLS_GOTO_DONE_NO_RET(); + } + + ndims = (int)H5Sget_simple_extent_npoints(space); + H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); + + /* Assume entire data space to be printed */ + if (ctx.ndims > 0) + for (i = 0; i < (size_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + + H5Sget_simple_extent_dims(space, total_size, NULL); + if (ctx.ndims > 0) + init_acc_pos(&ctx, total_size); + ctx.need_prefix = TRUE; + + if (NULL != (region_buf = (void *)HDcalloc(nsize, (size_t)ndims))) { + H5TOOLS_DEBUG("H5Aread reference read"); + if (H5Aread(attr, f_type, region_buf) < 0) { + HDfree(region_buf); + H5TOOLS_INFO("H5Aread reference failed"); + H5TOOLS_GOTO_DONE_NO_RET(); + } + ctx.indent_level++; + dump_reference(rawoutstream, info, &ctx, attr, f_type, region_buf, ndims); + ctx.indent_level--; + HDfree(region_buf); + } + } + else { + H5TOOLS_DEBUG("Attribute data read"); + ctx.indent_level++; + if (h5tools_dump_mem(rawoutstream, info, &ctx, attr) < 0) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Unable to print data."); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); + } + ctx.indent_level--; + H5TOOLS_DEBUG("Attribute data read complete"); + } +done: + H5Sclose(space); + H5Tclose(f_type); + + h5tools_str_close(&buffer); + + PRINTVALSTREAM(rawoutstream, "\n"); + + H5TOOLS_ENDDEBUG(""); +} + +/*------------------------------------------------------------------------- + * Function: list_attr * - * Modifications: + * Purpose: Prints information about attributes. * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, - void H5_ATTR_UNUSED *op_data) + void H5_ATTR_UNUSED *op_data) { - hid_t attr = -1; - hid_t space = -1; - hid_t type = -1; - hid_t p_type = -1; - hsize_t size[H5S_MAX_RANK]; - hsize_t nelmts = 1; - hsize_t temp_need; - size_t need; - int ndims; - int i; - void *buf; - H5S_class_t space_type; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; - h5tool_format_t outputformat; + hid_t attr = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hid_t type = H5I_INVALID_HID; + hsize_t size[H5S_MAX_RANK]; + hsize_t nelmts = 1; + int ndims; + int i; + H5S_class_t space_type; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; + + H5TOOLS_START_DEBUG(""); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + ctx.indent_level = 2; + ctx.cur_column = (size_t)curr_pos; + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " Attribute: "); print_string(&buffer, attr_name, TRUE); - if((attr = H5Aopen(obj, attr_name, H5P_DEFAULT))) { + H5TOOLS_DEBUG("Attribute name:%s", attr_name); + if ((attr = H5Aopen(obj, attr_name, H5P_DEFAULT)) >= 0) { space = H5Aget_space(attr); - type = H5Aget_type(attr); + type = H5Aget_type(attr); /* Data space */ - ndims = H5Sget_simple_extent_dims(space, size, NULL); + ndims = H5Sget_simple_extent_dims(space, size, NULL); space_type = H5Sget_simple_extent_type(space); - switch(space_type) { + H5TOOLS_DEBUG("Attribute ndims:%d", ndims); + switch (space_type) { case H5S_SCALAR: /* scalar dataspace */ h5tools_str_append(&buffer, " scalar\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); break; case H5S_SIMPLE: /* simple dataspace */ h5tools_str_append(&buffer, " {"); - for (i=0; i<ndims; i++) { - h5tools_str_append(&buffer, "%s" HSIZE_T_FORMAT, i?", ":"", size[i]); + for (i = 0; i < ndims; i++) { + h5tools_str_append(&buffer, "%s" HSIZE_T_FORMAT, i ? ", " : "", size[i]); nelmts *= size[i]; } h5tools_str_append(&buffer, "}\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); break; case H5S_NULL: /* null dataspace */ h5tools_str_append(&buffer, " null\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); break; case H5S_NO_CLASS: default: /* Unknown dataspace type */ h5tools_str_append(&buffer, " unknown\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); break; } /* end switch */ /* Data type */ h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Type: "); + h5tools_str_append(&buffer, " %-10s ", "Type:"); print_type(&buffer, type, 15); h5tools_str_append(&buffer, "\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - - /* Data */ - outputformat = *info; - - if(nelmts < 5) { - outputformat.idx_fmt = ""; - outputformat.line_1st = " Data: "; - outputformat.line_pre = " "; - outputformat.line_cont = " "; - outputformat.str_repeat = 8; - - } - else { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Data:\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - outputformat.line_1st = NULL; - outputformat.line_pre = " %s "; - outputformat.line_cont = " %s "; - outputformat.str_repeat = 8; - } - - outputformat.line_ncols = (unsigned)width_g; - if(label_g) - outputformat.cmpd_name = "%s="; - if(string_g && 1==H5Tget_size(type) && - H5T_INTEGER==H5Tget_class(type)) { - outputformat.ascii = TRUE; - outputformat.elmt_suf1 = ""; - outputformat.elmt_suf2 = ""; - outputformat.line_pre = " %s \""; - outputformat.line_suf = "\""; - } /* end if */ - - - outputformat.arr_pre = NULL; - outputformat.arr_suf = NULL; - outputformat.arr_sep = NULL; - - outputformat.cmpd_pre = NULL; - outputformat.cmpd_suf = NULL; - outputformat.cmpd_sep = NULL; - - outputformat.vlen_sep = NULL; - outputformat.vlen_pre = NULL; - outputformat.vlen_suf = NULL; - outputformat.vlen_end = NULL; - - info = &outputformat; - - if(space_type != H5S_NULL && space_type != H5S_NO_CLASS) { - if(hexdump_g) - p_type = H5Tcopy(type); - else - p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT); - - if(p_type >= 0) { - /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - - /* Check if we have VL data in the dataset's datatype */ - if (h5tools_detect_vlen(p_type) == TRUE) - vl_data = TRUE; - - temp_need = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type)); - need = (size_t)temp_need; - if((buf = HDmalloc(need)) != NULL) { - if(H5Aread(attr, p_type, buf) >= 0) { - ctx.need_prefix = TRUE; - ctx.indent_level = 2; - ctx.cur_column = (size_t)curr_pos; - h5tools_dump_mem(rawoutstream, info, &ctx, attr, p_type, space, buf); - } - - /* Reclaim any VL memory, if necessary */ - if (vl_data) - H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf); - - HDfree(buf); - } - H5Tclose(p_type); - } /* end if */ - } + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); H5Sclose(space); H5Tclose(type); + + h5tools_str_close(&buffer); + + if (data_g) + dump_attribute_values(attr); H5Aclose(attr); } - h5tools_str_close(&buffer); - - PRINTVALSTREAM(rawoutstream, "\n"); + else { + H5TOOLS_DEBUG("Attribute open failed"); + h5tools_str_close(&buffer); + } + H5TOOLS_ENDDEBUG(""); return 0; } - /*------------------------------------------------------------------------- - * Function: dataset_list1 - * - * Purpose: List information about a dataset which should appear on the - * same line as the dataset name. This information will precede - * information which is applicable to all objects which will be - * printed by the caller. - * - * Return: Success: 0 + * Function: dataset_list1 * - * Failure: -1 - * - * Programmer: Robb Matzke - * Thursday, August 27, 1998 - * - * Modifications: + * Purpose: List information about a dataset which should appear on the + * same line as the dataset name. This information will precede + * information which is applicable to all objects which will be + * printed by the caller. * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t dataset_list1(hid_t dset) { - hsize_t cur_size[H5S_MAX_RANK]; /* current dataset dimensions */ - hsize_t max_size[H5S_MAX_RANK]; /* maximum dataset dimensions */ - hid_t space; /* data space */ - int ndims; /* dimensionality */ - H5S_class_t space_type; /* type of dataspace */ - int i; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + hsize_t cur_size[H5S_MAX_RANK]; /* current dataset dimensions */ + hsize_t max_size[H5S_MAX_RANK]; /* maximum dataset dimensions */ + hid_t space; /* data space */ + int ndims; /* dimensionality */ + H5S_class_t space_type; /* type of dataspace */ + int i; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -1702,144 +1861,143 @@ dataset_list1(hid_t dset) /* Information that goes on the same row as the name. The name has * already been printed. */ - space = H5Dget_space(dset); + space = H5Dget_space(dset); space_type = H5Sget_simple_extent_type(space); - ndims = H5Sget_simple_extent_dims(space, cur_size, max_size); + ndims = H5Sget_simple_extent_dims(space, cur_size, max_size); h5tools_str_append(&buffer, " {"); - for (i=0; i<ndims; i++) { - h5tools_str_append(&buffer, "%s"HSIZE_T_FORMAT, i?", ":"", cur_size[i]); - if (max_size[i]==H5S_UNLIMITED) { + for (i = 0; i < ndims; i++) { + h5tools_str_append(&buffer, "%s" HSIZE_T_FORMAT, i ? ", " : "", cur_size[i]); + if (max_size[i] == H5S_UNLIMITED) { h5tools_str_append(&buffer, "/%s", "Inf"); } - else if (max_size[i]!=cur_size[i] || verbose_g>0) { - h5tools_str_append(&buffer, "/"HSIZE_T_FORMAT, max_size[i]); + else if (max_size[i] != cur_size[i] || verbose_g > 0) { + h5tools_str_append(&buffer, "/" HSIZE_T_FORMAT, max_size[i]); } } - if (space_type==H5S_SCALAR) h5tools_str_append(&buffer, "SCALAR"); - else if (space_type==H5S_NULL) h5tools_str_append(&buffer, "NULL"); + if (space_type == H5S_SCALAR) + h5tools_str_append(&buffer, "SCALAR"); + else if (space_type == H5S_NULL) + h5tools_str_append(&buffer, "NULL"); h5tools_str_append(&buffer, "}"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - H5Sclose (space); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, + (hsize_t)0); + H5Sclose(space); h5tools_str_close(&buffer); return 0; } - /*------------------------------------------------------------------------- - * Function: dataset_list2 - * - * Purpose: List information about a dataset which should appear after - * information which is general to all objects. - * - * Return: Success: 0 - * - * Failure: -1 + * Function: dataset_list2 * - * Programmer: Robb Matzke - * Thursday, August 27, 1998 - * - * Modifications: + * Purpose: List information about a dataset which should appear after + * information which is general to all objects. * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name) { - hid_t dcpl; /* dataset creation property list */ - hid_t type; /* data type of dataset */ - hid_t space; /* data space of dataset */ - int nf; /* number of filters */ - unsigned filt_flags; /* filter flags */ - H5Z_filter_t filt_id; /* filter identification number */ - unsigned cd_values[20]; /* filter client data values */ - size_t cd_nelmts; /* filter client number of values */ - size_t cd_num; /* filter client data counter */ - char f_name[256]; /* filter/file name */ - char s[64]; /* temporary string buffer */ - off_t f_offset; /* offset in external file */ - hsize_t f_size; /* bytes used in external file */ - hsize_t total, used; /* total size or offset */ - int ndims; /* dimensionality */ - int n, max_len; /* max extern file name length */ - double utilization; /* percent utilization of storage */ - H5T_class_t tclass; /* datatype class identifier */ - int i; - H5D_layout_t stl; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + hid_t dcpl; /* dataset creation property list */ + hid_t type; /* data type of dataset */ + hid_t space; /* data space of dataset */ + int nf; /* number of filters */ + unsigned filt_flags; /* filter flags */ + H5Z_filter_t filt_id; /* filter identification number */ + unsigned cd_values[20]; /* filter client data values */ + size_t cd_nelmts; /* filter client number of values */ + size_t cd_num; /* filter client data counter */ + char f_name[256]; /* filter/file name */ + char s[64]; /* temporary string buffer */ + off_t f_offset; /* offset in external file */ + hsize_t f_size; /* bytes used in external file */ + hsize_t total, used; /* total size or offset */ + int ndims; /* dimensionality */ + int n, max_len; /* max extern file name length */ + double utilization; /* percent utilization of storage */ + H5T_class_t tclass; /* datatype class identifier */ + int i; + H5D_layout_t stl; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); h5tools_str_reset(&buffer); - if(verbose_g > 0) { - dcpl = H5Dget_create_plist(dset); + if (verbose_g > 0) { + dcpl = H5Dget_create_plist(dset); space = H5Dget_space(dset); - type = H5Dget_type(dset); + type = H5Dget_type(dset); stl = H5Pget_layout(dcpl); switch (stl) { - case H5D_CHUNKED: - { - hsize_t chsize[64]; /* chunk size in elements */ - - ndims = H5Pget_chunk(dcpl, (int)NELMTS(chsize), chsize/*out*/); - h5tools_str_append(&buffer, " %-10s {", "Chunks:"); - total = H5Tget_size(type); - for (i=0; i<ndims; i++) { - h5tools_str_append(&buffer, "%s"HSIZE_T_FORMAT, i?", ":"", chsize[i]); - total *= chsize[i]; - } - h5tools_str_append(&buffer, "} "HSIZE_T_FORMAT" bytes\n", total); + case H5D_CHUNKED: { + hsize_t chsize[64]; /* chunk size in elements */ + + ndims = H5Pget_chunk(dcpl, (int)NELMTS(chsize), chsize /*out*/); + h5tools_str_append(&buffer, " %-10s {", "Chunks:"); + total = H5Tget_size(type); + for (i = 0; i < ndims; i++) { + h5tools_str_append(&buffer, "%s" HSIZE_T_FORMAT, i ? ", " : "", chsize[i]); + total *= chsize[i]; } - break; + h5tools_str_append(&buffer, "} " HSIZE_T_FORMAT " bytes\n", total); + } break; case H5D_COMPACT: break; case H5D_CONTIGUOUS: /* Print information about external storage */ - if((nf = H5Pget_external_count(dcpl)) > 0) { - for(i = 0, max_len = 0; i < nf; i++) { - if(H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, NULL, NULL) < 0) + if ((nf = H5Pget_external_count(dcpl)) > 0) { + for (i = 0, max_len = 0; i < nf; i++) { + if (H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, NULL, NULL) < 0) continue; - n = print_string(NULL, f_name, TRUE); + n = print_string(NULL, f_name, TRUE); max_len = MAX(max_len, n); } /* end for */ - h5tools_str_append(&buffer, " %-10s %d external file%s\n", - "Extern:", nf, 1==nf?"":"s"); - h5tools_str_append(&buffer, " %4s %10s %10s %10s %s\n", - "ID", "DSet-Addr", "File-Addr", "Bytes", "File"); - h5tools_str_append(&buffer, " %4s %10s %10s %10s ", - "----", "----------", "----------", "----------"); - for (i=0; i<max_len; i++) h5tools_str_append(&buffer, "-"); + h5tools_str_append(&buffer, " %-10s %d external file%s\n", "Extern:", nf, + 1 == nf ? "" : "s"); + h5tools_str_append(&buffer, " %4s %10s %10s %10s %s\n", "ID", "DSet-Addr", + "File-Addr", "Bytes", "File"); + h5tools_str_append(&buffer, " %4s %10s %10s %10s ", "----", "----------", + "----------", "----------"); + for (i = 0; i < max_len; i++) + h5tools_str_append(&buffer, "-"); h5tools_str_append(&buffer, "\n"); - for (i=0, total=0; i<nf; i++) { - if (H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, &f_offset, &f_size)<0) { - h5tools_str_append(&buffer, - " #%03d %10"H5_PRINTF_LL_WIDTH"u %10s %10s ***ERROR*** %s\n", - i, total, "", "", - i+1<nf?"Following addresses are incorrect":""); + for (i = 0, total = 0; i < nf; i++) { + if (H5Pget_external(dcpl, (unsigned)i, sizeof(f_name), f_name, &f_offset, &f_size) < + 0) { + h5tools_str_append( + &buffer, + " #%03d %10" H5_PRINTF_LL_WIDTH "u %10s %10s ***ERROR*** %s\n", i, + total, "", "", i + 1 < nf ? "Following addresses are incorrect" : ""); } - else if (H5S_UNLIMITED==f_size) { - h5tools_str_append(&buffer, " #%03d %10"H5_PRINTF_LL_WIDTH"u %10"H5_PRINTF_LL_WIDTH"u %10s ", - i, total, (hsize_t)f_offset, "INF"); + else if (H5S_UNLIMITED == f_size) { + h5tools_str_append(&buffer, + " #%03d %10" H5_PRINTF_LL_WIDTH + "u %10" H5_PRINTF_LL_WIDTH "u %10s ", + i, total, (hsize_t)f_offset, "INF"); print_string(&buffer, f_name, TRUE); } else { - h5tools_str_append(&buffer, " #%03d %10"H5_PRINTF_LL_WIDTH"u %10"H5_PRINTF_LL_WIDTH"u %10"H5_PRINTF_LL_WIDTH"u ", - i, total, (hsize_t)f_offset, f_size); + h5tools_str_append(&buffer, + " #%03d %10" H5_PRINTF_LL_WIDTH + "u %10" H5_PRINTF_LL_WIDTH "u %10" H5_PRINTF_LL_WIDTH "u ", + i, total, (hsize_t)f_offset, f_size); print_string(&buffer, f_name, TRUE); } h5tools_str_append(&buffer, "\n"); total += f_size; } - h5tools_str_append(&buffer, " %4s %10s %10s %10s ", - "----", "----------", "----------", "----------"); - for (i=0; i<max_len; i++) + h5tools_str_append(&buffer, " %4s %10s %10s %10s ", "----", "----------", + "----------", "----------"); + for (i = 0; i < max_len; i++) h5tools_str_append(&buffer, "-"); h5tools_str_append(&buffer, "\n"); } /* end if */ @@ -1849,74 +2007,72 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name) break; } /* Print total raw storage size */ - total = (hsize_t)H5Sget_simple_extent_npoints(space) * H5Tget_size(type); - used = H5Dget_storage_size(dset); + total = (hsize_t)H5Sget_simple_extent_npoints(space) * H5Tget_size(type); + used = H5Dget_storage_size(dset); tclass = H5Tget_class(type); h5tools_str_append(&buffer, " %-10s ", "Storage:"); - switch (tclass) - { - - case H5T_VLEN: - h5tools_str_append(&buffer, "information not available"); - break; - - case H5T_REFERENCE: - if ( H5Tequal(type, H5T_STD_REF_DSETREG)) - { + switch (tclass) { + case H5T_VLEN: h5tools_str_append(&buffer, "information not available"); - } - break; + break; - case H5T_NO_CLASS: - case H5T_INTEGER: - case H5T_FLOAT: - case H5T_TIME: - case H5T_STRING: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_COMPOUND: - case H5T_ENUM: - case H5T_ARRAY: - case H5T_NCLASSES: - default: - h5tools_str_append(&buffer, HSIZE_T_FORMAT" logical byte%s, "HSIZE_T_FORMAT" allocated byte%s", - total, 1==total?"":"s", - used, 1==used?"":"s"); - if (used>0) - { - utilization = ((double)total * (double)100.0f) / (double)used; - h5tools_str_append(&buffer, ", %1.2f%% utilization", utilization); - } + case H5T_REFERENCE: + if (H5Tequal(dset, H5T_STD_REF_DSETREG)) { + h5tools_str_append(&buffer, "information not available"); + } + break; + + case H5T_NO_CLASS: + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_TIME: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_COMPOUND: + case H5T_ENUM: + case H5T_ARRAY: + case H5T_NCLASSES: + default: + h5tools_str_append(&buffer, + HSIZE_T_FORMAT " logical byte%s, " HSIZE_T_FORMAT " allocated byte%s", + total, 1 == total ? "" : "s", used, 1 == used ? "" : "s"); + if (used > 0) { + utilization = ((double)total * (double)100.0f) / (double)used; + h5tools_str_append(&buffer, ", %1.2f%% utilization", utilization); + } } h5tools_str_append(&buffer, "\n"); /* Print information about raw data filters */ - if((nf = H5Pget_nfilters(dcpl)) > 0) { - for(i = 0; i < nf; i++) { + if ((nf = H5Pget_nfilters(dcpl)) > 0) { + for (i = 0; i < nf; i++) { cd_nelmts = NELMTS(cd_values); - filt_id = H5Pget_filter2(dcpl, (unsigned)i, &filt_flags, &cd_nelmts, - cd_values, sizeof(f_name), f_name, NULL); + filt_id = H5Pget_filter2(dcpl, (unsigned)i, &filt_flags, &cd_nelmts, cd_values, + sizeof(f_name), f_name, NULL); f_name[sizeof(f_name) - 1] = '\0'; HDsnprintf(s, sizeof(s), "Filter-%d:", i); - h5tools_str_append(&buffer, " %-10s %s-%u %s {", s, - (f_name[0] ? f_name : "method"), - (unsigned)filt_id, - ((filt_flags & H5Z_FLAG_OPTIONAL) ? "OPT" : "")); - for(cd_num = 0; cd_num < cd_nelmts; cd_num++) + h5tools_str_append(&buffer, " %-10s %s-%u %s {", s, (f_name[0] ? f_name : "method"), + (unsigned)filt_id, ((filt_flags & H5Z_FLAG_OPTIONAL) ? "OPT" : "")); + for (cd_num = 0; cd_num < cd_nelmts; cd_num++) h5tools_str_append(&buffer, "%s%u", (cd_num ? ", " : ""), cd_values[cd_num]); h5tools_str_append(&buffer, "}\n"); } /* end for */ - } /* end if */ + } /* end if */ + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Print data type */ + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " %-10s ", "Type:"); print_type(&buffer, type, 15); h5tools_str_append(&buffer, "\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Print address information */ - if(address_g) + if (address_g) H5Ddebug(dset); /* Close stuff */ @@ -1927,38 +2083,30 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name) h5tools_str_close(&buffer); - if(data_g) + if (data_g) dump_dataset_values(dset); return 0; } /* end dataset_list2() */ - /*------------------------------------------------------------------------- - * Function: datatype_list2 - * - * Purpose: List information about a datatype which should appear after - * information which is general to all objects. - * - * Return: Success: 0 - * - * Failure: -1 + * Function: datatype_list2 * - * Programmer: Robb Matzke - * Thursday, November 5, 1998 - * - * Modifications: + * Purpose: List information about a datatype which should appear after + * information which is general to all objects. * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t datatype_list2(hid_t type, const char H5_ATTR_UNUSED *name) { - if (verbose_g>0) { - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + if (verbose_g > 0) { + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -1968,123 +2116,131 @@ datatype_list2(hid_t type, const char H5_ATTR_UNUSED *name) h5tools_str_append(&buffer, " %-10s ", "Type:"); print_type(&buffer, type, 15); h5tools_str_append(&buffer, "\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); h5tools_str_close(&buffer); } return 0; } - /*------------------------------------------------------------------------- - * Function: list_obj - * - * Purpose: Prints information about an object - * - * Return: Success: 0 + * Function: list_obj * - * Failure: -1 - * - * Programmer: Quincey Koziol - * Tuesday, November 6, 2007 + * Purpose: Prints information about an object * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void *_iter) { - H5O_type_t obj_type = oinfo->type; /* Type of the object */ - iter_t *iter = (iter_t*)_iter; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + H5O_type_t obj_type = oinfo->type; /* Type of the object */ + iter_t * iter = (iter_t *)_iter; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; + + H5TOOLS_START_DEBUG(""); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); h5tools_str_reset(&buffer); + H5TOOLS_DEBUG("Object name:%s", name); /* Print the link's name, either full name or base name */ - if(!iter->symlink_target) + if (!iter->symlink_target) print_obj_name(&buffer, iter, name, ""); /* Check object information */ - if(oinfo->type < 0 || oinfo->type >= H5O_TYPE_NTYPES) { + if (oinfo->type < 0 || oinfo->type >= H5O_TYPE_NTYPES) { h5tools_str_append(&buffer, "Unknown type(%d)", (int)oinfo->type); obj_type = H5O_TYPE_UNKNOWN; } - if(iter->symlink_target) + if (iter->symlink_target) h5tools_str_append(&buffer, "{"); - if(obj_type >= 0 && dispatch_g[obj_type].name) + if (obj_type >= 0 && dispatch_g[obj_type].name) h5tools_str_append(&buffer, "%s", dispatch_g[obj_type].name); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, + (hsize_t)0); /* Check if we've seen this object before */ - if(first_seen) { + if (first_seen) { h5tools_str_reset(&buffer); h5tools_str_append(&buffer, ", same as "); print_string(&buffer, first_seen, TRUE); - if(!iter->symlink_target) { + if (!iter->symlink_target) { h5tools_str_append(&buffer, "\n"); } - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); } /* end if */ else { - hid_t obj = (-1); /* ID of object opened */ + hid_t obj = H5I_INVALID_HID; /* ID of object opened */ /* Open the object. Not all objects can be opened. If this is the case * then return right away. */ - if(obj_type >= 0 && (obj = H5Oopen(iter->fid, name, H5P_DEFAULT)) < 0) { + H5TOOLS_DEBUG("Open object name=%s", name); + if (obj_type >= 0 && (obj = H5Oopen(iter->fid, name, H5P_DEFAULT)) < 0) { h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " *ERROR*\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); goto done; } /* end if */ /* List the first line of information for the object. */ - if(obj_type >= 0 && dispatch_g[obj_type].list1) + H5TOOLS_DEBUG("Object type:%d", obj_type); + if (obj_type >= 0 && dispatch_g[obj_type].list1) (dispatch_g[obj_type].list1)(obj); - if(!iter->symlink_target || (verbose_g > 0)) { + if (!iter->symlink_target || (verbose_g > 0)) { h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); } /* Show detailed information about the object, beginning with information * which is common to all objects. */ - if(verbose_g > 0) { - size_t buf_size = 0; - char* comment = NULL; + if (verbose_g > 0) { + size_t buf_size = 0; + char * comment = NULL; ssize_t cmt_bufsize = -1; /* Display attributes */ - if(obj_type >= 0) + H5TOOLS_DEBUG("Display attributes"); + if (obj_type >= 0) H5Aiterate2(obj, H5_INDEX_NAME, H5_ITER_INC, NULL, list_attr, NULL); /* Object location & reference count */ h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " %-10s %lu:"H5_PRINTF_HADDR_FMT"\n", "Location:", oinfo->fileno, oinfo->addr); + h5tools_str_append(&buffer, " %-10s %lu:" H5_PRINTF_HADDR_FMT "\n", "Location:", oinfo->fileno, + oinfo->addr); h5tools_str_append(&buffer, " %-10s %u\n", "Links:", (unsigned)oinfo->rc); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Modification time */ - if(oinfo->mtime > 0) { - char buf[256]; + if (oinfo->mtime > 0) { + char buf[256]; struct tm *tm; - if(simple_output_g) + if (simple_output_g) tm = HDgmtime(&(oinfo->mtime)); else tm = HDlocaltime(&(oinfo->mtime)); - if(tm) { + if (tm) { HDstrftime(buf, sizeof(buf), "%Y-%m-%d %H:%M:%S %Z", tm); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " %-10s %s\n", "Modified:", buf); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, + (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); } /* end if */ - } /* end if */ + } /* end if */ /* Object comment */ cmt_bufsize = H5Oget_comment(obj, comment, buf_size); @@ -2094,15 +2250,16 @@ list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void * If the call to H5Oget_comment returned an error, skip this block */ if (cmt_bufsize > 0) { comment = (char *)HDmalloc((size_t)cmt_bufsize + 1); /* new_size including null terminator */ - if(comment) { + if (comment) { cmt_bufsize = H5Oget_comment(obj, comment, (size_t)cmt_bufsize); - if(cmt_bufsize > 0) { + if (cmt_bufsize > 0) { comment[cmt_bufsize] = 0; h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " %-10s \"", "Comment:"); print_string(&buffer, comment, FALSE); h5tools_str_append(&buffer, "\"\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, + (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); } /* end if */ HDfree(comment); } @@ -2110,53 +2267,49 @@ list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void } /* end if */ /* Detailed list for object */ - if(obj_type >= 0 && dispatch_g[obj_type].list2) + if (obj_type >= 0 && dispatch_g[obj_type].list2) (dispatch_g[obj_type].list2)(obj, name); /* Close the object. */ - if(obj_type >= 0) + if (obj_type >= 0) H5Oclose(obj); } /* end else */ done: - if(iter->symlink_target) { + if (iter->symlink_target) { h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "}\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); iter->symlink_target = FALSE; } h5tools_str_close(&buffer); + H5TOOLS_ENDDEBUG(""); + return 0; } /* end list_obj() */ - - /*------------------------------------------------------------------------- * Function: list_lnk * * Purpose: Prints information about a link * * Return: Success: 0 - * - * Failure: -1 - * - * Programmer: Quincey Koziol - * Thursday, November 8, 2007 - * + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) { - char *buf=NULL; - iter_t *iter = (iter_t*)_iter; - int ret; - hsize_t curr_pos = 0; /* total data element position */ + char * buf = NULL; + iter_t * iter = (iter_t *)_iter; + int ret; + hsize_t curr_pos = 0; /* total data element position */ h5tool_link_info_t lnk_info; - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -2168,17 +2321,17 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) /* if verbose, make H5tools_get_symlink_info() display more */ if (verbose_g) - lnk_info.opt.msg_mode=1; + lnk_info.opt.msg_mode = 1; /* Print the link's name, either full name or base name */ print_obj_name(&buffer, iter, name, ""); - switch(linfo->type) { + switch (linfo->type) { case H5L_TYPE_SOFT: ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_symlink_g); /* lnk_info.trg_path is malloced in H5tools_get_symlink_info() * so it will be freed via buf later */ - buf = (char*)lnk_info.trg_path; + buf = (char *)lnk_info.trg_path; /* error */ if (ret < 0) goto done; @@ -2189,24 +2342,25 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) h5tools_str_append(&buffer, "Soft Link {"); h5tools_str_append(&buffer, buf); h5tools_str_append(&buffer, "}"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - if(follow_symlink_g) - { + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); + if (follow_symlink_g) { hbool_t orig_grp_literal = grp_literal_g; h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " "); /* Check if we have already seen this softlink */ - if(symlink_is_visited(iter->symlink_list, linfo->type, NULL, buf)) - { + if (symlink_is_visited(iter->symlink_list, linfo->type, NULL, buf)) { h5tools_str_append(&buffer, "{Already Visited}\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, + (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); goto done; } - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Add this link to the list of seen softlinks */ - if(symlink_visit_add(iter->symlink_list, linfo->type, NULL, buf) < 0) + if (symlink_visit_add(iter->symlink_list, linfo->type, NULL, buf) < 0) goto done; /* Adjust user data to specify that we are operating on the @@ -2215,11 +2369,10 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) /* Prevent recursive listing of soft link target if * recursive_g is off */ - if(!recursive_g) + if (!recursive_g) grp_literal_g = TRUE; /* Recurse through the soft link */ - if(visit_obj(iter->fid, name, iter) < 0) - { + if (visit_obj(iter->fid, name, iter) < 0) { grp_literal_g = orig_grp_literal; goto done; } @@ -2229,21 +2382,21 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) else { h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); } break; - case H5L_TYPE_EXTERNAL: - { + case H5L_TYPE_EXTERNAL: { const char *filename; const char *path; - hbool_t follow_link = follow_symlink_g || follow_elink_g; + hbool_t follow_link = follow_symlink_g || follow_elink_g; ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_link); /* lnk_info.trg_path is malloced in H5tools_get_symlink_info() * so it will be freed via buf later */ - buf = (char*)lnk_info.trg_path; + buf = (char *)lnk_info.trg_path; /* error */ if (ret < 0) goto done; @@ -2251,38 +2404,38 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) else if (no_dangling_link_g && ret == 0) iter->symlink_list->dangle_link = TRUE; - if(H5Lunpack_elink_val(buf, linfo->u.val_size, NULL, &filename, &path) < 0) + if (H5Lunpack_elink_val(buf, linfo->u.val_size, NULL, &filename, &path) < 0) goto done; h5tools_str_append(&buffer, "External Link {"); h5tools_str_append(&buffer, filename); h5tools_str_append(&buffer, "/"); - if(*path != '/') + if (*path != '/') h5tools_str_append(&buffer, "/"); - h5tools_str_append(&buffer, path); + h5tools_str_append(&buffer, path); h5tools_str_append(&buffer, "}"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Recurse through the external link */ /* keep the follow_elink_g for backward compatibility with -E */ - if(follow_link) - { + if (follow_link) { hbool_t orig_grp_literal = grp_literal_g; h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " "); /* Check if we have already seen this elink */ - if(symlink_is_visited(iter->symlink_list, linfo->type, filename, path)) - { + if (symlink_is_visited(iter->symlink_list, linfo->type, filename, path)) { h5tools_str_append(&buffer, "{Already Visited}\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, + (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); goto done; } - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); /* Add this link to the list of seen elinks */ - if(symlink_visit_add(iter->symlink_list, linfo->type, filename, path) < 0) - { + if (symlink_visit_add(iter->symlink_list, linfo->type, filename, path) < 0) { goto done; } @@ -2292,11 +2445,11 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) /* Prevent recursive listing of external link target if * recursive_g is off */ - if(!recursive_g) + if (!recursive_g) grp_literal_g = TRUE; /* Recurse through the external link */ - if(visit_obj(iter->fid, name, iter) < 0) { + if (visit_obj(iter->fid, name, iter) < 0) { grp_literal_g = orig_grp_literal; goto done; } @@ -2305,15 +2458,15 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) } else PRINTVALSTREAM(rawoutstream, "\n"); - } - break; + } break; case H5L_TYPE_ERROR: case H5L_TYPE_HARD: case H5L_TYPE_MAX: default: h5tools_str_append(&buffer, "UD Link {cannot follow UD links}\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); break; } /* end switch */ @@ -2325,31 +2478,24 @@ done: return 0; } /* end list_lnk() */ - /*------------------------------------------------------------------------- - * Function: visit_obj - * - * Purpose: Begins iteration on an object + * Function: visit_obj * - * Return: - * Success: 0 - * Failure: -1 - * - * Programmer: Neil Fortner - * Wednesday, August 21, 2008 - * Mostly copied from main() + * Purpose: Begins iteration on an object * + * Return: Success: 0 + * Failure: -1 *------------------------------------------------------------------------- */ static herr_t visit_obj(hid_t file, const char *oname, iter_t *iter) { - int retval = 0; - H5O_info_t oi; /* Information for object */ - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + int retval = 0; + H5O_info_t oi; /* Information for object */ + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -2357,38 +2503,41 @@ visit_obj(hid_t file, const char *oname, iter_t *iter) h5tools_str_reset(&buffer); /* Retrieve info for object to list */ - if(H5Oget_info_by_name(file, oname, &oi, H5P_DEFAULT) < 0) { - if(iter->symlink_target) { + if (H5Oget_info_by_name(file, oname, &oi, H5P_DEFAULT) < 0) { + if (iter->symlink_target) { h5tools_str_append(&buffer, "{**NOT FOUND**}\n"); iter->symlink_target = FALSE; } else print_obj_name(&buffer, iter, oname, "**NOT FOUND**"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); retval = -1; goto done; } /* end if */ /* Check for group iteration */ - if(H5O_TYPE_GROUP == oi.type && !grp_literal_g) { + if (H5O_TYPE_GROUP == oi.type && !grp_literal_g) { /* Get ID for group */ - if(!iter->symlink_target && (iter->gid = H5Gopen2(file, oname, H5P_DEFAULT)) < 0) { + if (!iter->symlink_target && (iter->gid = H5Gopen2(file, oname, H5P_DEFAULT)) < 0) { h5tools_str_append(&buffer, "%s: unable to open '%s' as group\n", iter->fname, oname); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - goto done; /* Previously "continue", when this code was in main(). - * We don't "continue" here in order to close the file - * and free the file name properly. */ - } /* end if */ + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); + goto done; /* Previously "continue", when this code was in main(). + * We don't "continue" here in order to close the file + * and free the file name properly. */ + } /* end if */ /* Delay specifying the name start point so the original object name is * displayed if it is a link or non-group object */ iter->name_start = iter->base_len; /* Specified name is a group. List the complete contents of the group. */ - h5trav_visit(file, oname, (hbool_t) (display_root_g || iter->symlink_target), recursive_g, list_obj, list_lnk, iter); + h5trav_visit(file, oname, (hbool_t)(display_root_g || iter->symlink_target), recursive_g, list_obj, + list_lnk, iter); /* Close group */ - if(!iter->symlink_target) + if (!iter->symlink_target) H5Gclose(iter->gid); } /* end if */ else { @@ -2405,35 +2554,27 @@ done: return retval; } - /*------------------------------------------------------------------------- - * Function: get_width - * - * Purpose: Figure out how wide the screen is. This is highly - * unportable, but the user can always override the width we - * detect by giving a command-line option. These code snippets - * were borrowed from the GNU less(1). - * - * Return: Success: Number of columns. + * Function: get_width * - * Failure: Some default number of columms. - * - * Programmer: Robb Matzke - * Friday, November 6, 1998 - * - * Modifications: + * Purpose: Figure out how wide the screen is. This is highly + * unportable, but the user can always override the width we + * detect by giving a command-line option. These code snippets + * were borrowed from the GNU less(1). * + * Return: Success: Number of columns. + * Failure: Some default number of columms. *------------------------------------------------------------------------- */ static int get_width(void) { - int width = 80; /*the default */ + int width = 80; /*the default */ char *s; /* Try to get it from the COLUMNS environment variable first since it's * value is sometimes wrong. */ - if ((s=HDgetenv("COLUMNS")) && *s && isdigit((int)*s)) + if ((s = HDgetenv("COLUMNS")) && *s && isdigit((int)*s)) width = (int)HDstrtol(s, NULL, 0); #if defined(H5_HAVE_STRUCT_VIDEOCONFIG) && defined(H5_HAVE__GETVIDEOCONFIG) @@ -2468,51 +2609,46 @@ get_width(void) { /* Unix with ioctl(TIOCGWINSZ) */ struct winsize w; - if (ioctl(2, (int)TIOCGWINSZ, &w)>=0 && w.ws_col>0) + if (ioctl(2, (int)TIOCGWINSZ, &w) >= 0 && w.ws_col > 0) width = w.ws_col; } #elif defined(H5_HAVE_TIOCGETD) && defined(H5_HAVE_IOCTL) { /* Unix with ioctl(TIOCGETD) */ struct uwdata w; - if (ioctl(2, WIOCGETD, &w)>=0 && w.uw_width>0) + if (ioctl(2, WIOCGETD, &w) >= 0 && w.uw_width > 0) width = w.uw_width / w.uw_hs; } #endif /* Set to at least 1 */ - if (width<1) width = 1; + if (width < 1) + width = 1; return width; } /*------------------------------------------------------------------------- - * Function: is_valid_args - * - * Purpose: check if command line arguments are valid - * - * Return: - * Success: TRUE (1) - * Failure: FALSE (0) + * Function: is_valid_args * - * Programmer: - * Jonathan Kim (06/15/2010) + * Purpose: check if command line arguments are valid * + * Return: Success: TRUE (1) + * Failure: FALSE (0) *-------------------------------------------------------------------------*/ static hbool_t is_valid_args(void) { hbool_t ret = TRUE; - if(recursive_g && grp_literal_g) - { + if (recursive_g && grp_literal_g) { HDfprintf(rawerrorstream, "Error: 'recursive' option not compatible with 'group info' option!\n\n"); ret = FALSE; goto out; } - if(no_dangling_link_g && !follow_symlink_g) - { - HDfprintf(rawerrorstream, "Error: --no-dangling-links must be used along with --follow-symlinks option!\n\n"); + if (no_dangling_link_g && !follow_symlink_g) { + HDfprintf(rawerrorstream, + "Error: --no-dangling-links must be used along with --follow-symlinks option!\n\n"); ret = FALSE; goto out; } @@ -2521,19 +2657,12 @@ out: return ret; } - /*------------------------------------------------------------------------- - * Function: leave - * - * Purpose: Close HDF5 and MPI and call exit() - * - * Return: Does not return + * Function: leave * - * Programmer: Quincey Koziol - * Saturday, January 31, 2004 - * - * Modifications: + * Purpose: Close HDF5 and MPI and call exit() * + * Return: Does not return *------------------------------------------------------------------------- */ static void @@ -2544,42 +2673,70 @@ leave(int ret) HDexit(ret); } - /*------------------------------------------------------------------------- - * Function: main - * - * Purpose: Opens a file and lists the specified group - * - * Return: Success: 0 + * Function: main * - * Failure: 1 - * - * Programmer: Robb Matzke - * Monday, March 23, 1998 - * - * Modifications: + * Purpose: Opens a file and lists the specified group * + * Return: Success: 0 + * Failure: 1 *------------------------------------------------------------------------- */ int main(int argc, const char *argv[]) { - hid_t file = -1; - char *fname = NULL, *oname = NULL, *x; + hid_t file_id = H5I_INVALID_HID; + char * fname = NULL, *oname = NULL, *x; const char *s = NULL; - char *rest; - int argno; + char * rest; + int argno; static char root_name[] = "/"; char drivername[50]; const char *preferred_driver = NULL; - int err_exit = 0; + int err_exit = 0; + hid_t fapl_id = H5P_DEFAULT; + H5E_auto2_t func; + H5E_auto2_t tools_func; + void * edata; + void * tools_edata; + +#ifdef H5_HAVE_ROS3_VFD + /* default "anonymous" s3 configuration */ + H5FD_ros3_fapl_t ros3_fa = { + 1, /* fapl version */ + FALSE, /* authenticate */ + "", /* aws region */ + "", /* access key id */ + "", /* secret access key */ + }; +#endif /* H5_HVAE_ROS3_VFD */ + +#ifdef H5_HAVE_LIBHDFS + /* "default" HDFS configuration */ + H5FD_hdfs_fapl_t hdfs_fa = { + 1, /* fapl version */ + "localhost", /* namenode name */ + 0, /* namenode port */ + "", /* kerberos ticket cache */ + "", /* user name */ + 2048, /* stream buffer size */ + }; +#endif /* H5_HAVE_LIBHDFS */ h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); + /* Disable error reporting */ + H5Eget_auto2(H5E_DEFAULT, &func, &edata); + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + /* Initialize h5tools lib */ h5tools_init(); + /* Disable tools error reporting */ + H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); + H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); + /* Build object display table */ DISPATCH(H5O_TYPE_GROUP, "Group", NULL, NULL); DISPATCH(H5O_TYPE_DATASET, "Dataset", dataset_list1, dataset_list2); @@ -2589,93 +2746,259 @@ main(int argc, const char *argv[]) width_g = get_width(); /* Switches come before non-switch arguments */ - for(argno = 1; argno < argc && '-' == argv[argno][0]; argno++) { - if(!HDstrcmp(argv[argno], "--")) { + for (argno = 1; argno < argc && '-' == argv[argno][0]; argno++) { + if (!HDstrcmp(argv[argno], "--")) { /* Last switch */ argno++; break; - } else if(!HDstrcmp(argv[argno], "--help")) { + } + else if (!HDstrcmp(argv[argno], "--help")) { usage(); leave(EXIT_SUCCESS); - } else if(!HDstrcmp(argv[argno], "--address")) { + } + else if (!HDstrcmp(argv[argno], "--address")) { address_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--data")) { + } + else if (!HDstrcmp(argv[argno], "--data")) { data_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--enable-error-stack")) { - show_errors_g = TRUE; - /* deprecated --errors */ - } else if(!HDstrcmp(argv[argno], "--errors")) { - show_errors_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--follow-symlinks")) { + } + else if (!HDstrcmp(argv[argno], "--enable-error-stack")) { + enable_error_stack = 1; + /* deprecated --errors */ + } + else if (!HDstrcmp(argv[argno], "--errors")) { + enable_error_stack = 1; + } + else if (!HDstrcmp(argv[argno], "--follow-symlinks")) { follow_symlink_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--no-dangling-links")) { + } + else if (!HDstrcmp(argv[argno], "--no-dangling-links")) { no_dangling_link_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--external")) { + } + else if (!HDstrcmp(argv[argno], "--external")) { follow_elink_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--full")) { + } + else if (!HDstrcmp(argv[argno], "--full")) { fullname_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--group")) { + } + else if (!HDstrcmp(argv[argno], "--group")) { grp_literal_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--label")) { + } + else if (!HDstrcmp(argv[argno], "--label")) { label_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--recursive")) { + } + else if (!HDstrcmp(argv[argno], "--recursive")) { recursive_g = TRUE; - fullname_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--simple")) { + fullname_g = TRUE; + } + else if (!HDstrcmp(argv[argno], "--simple")) { simple_output_g = TRUE; - } else if(!HDstrcmp(argv[argno], "--string")) { + } + else if (!HDstrcmp(argv[argno], "--string")) { string_g = TRUE; - } else if(!HDstrncmp(argv[argno], "--vfd=", (size_t)6)) { - preferred_driver = argv[argno]+6; - } else if(!HDstrncmp(argv[argno], "--width=", (size_t)8)) { - width_g = (int)HDstrtol(argv[argno]+8, &rest, 0); + } + else if (!HDstrncmp(argv[argno], "--vfd=", (size_t)6)) { + preferred_driver = argv[argno] + 6; + } + else if (!HDstrncmp(argv[argno], "--width=", (size_t)8)) { + width_g = (int)HDstrtol(argv[argno] + 8, &rest, 0); - if(0 == width_g) + if (0 == width_g) no_line_wrap_g = TRUE; - else if(width_g < 0 || *rest) { + else if (width_g < 0 || *rest) { usage(); leave(EXIT_FAILURE); } - } else if(!HDstrcmp(argv[argno], "--width")) { - if((argno + 1) >= argc) { + } + else if (!HDstrcmp(argv[argno], "--width")) { + if ((argno + 1) >= argc) { usage(); leave(EXIT_FAILURE); - } else { + } + else { s = argv[++argno]; } width_g = (int)HDstrtol(s, &rest, 0); - if(width_g <= 0 || *rest) { + if (width_g <= 0 || *rest) { usage(); leave(EXIT_FAILURE); } - } else if(!HDstrcmp(argv[argno], "--verbose")) { + } + else if (!HDstrcmp(argv[argno], "--verbose")) { verbose_g++; - } else if(!HDstrcmp(argv[argno], "--version")) { + } + else if (!HDstrcmp(argv[argno], "--version")) { print_version(h5tools_getprogname()); leave(EXIT_SUCCESS); - } else if(!HDstrcmp(argv[argno], "--hexdump")) { + } + else if (!HDstrcmp(argv[argno], "--hexdump")) { hexdump_g = TRUE; - } else if(!HDstrncmp(argv[argno], "-w", (size_t)2)) { - if(argv[argno][2]) { + } + else if (!HDstrncmp(argv[argno], "-w", (size_t)2)) { + if (argv[argno][2]) { s = argv[argno] + 2; - } else if((argno + 1) >= argc) { + } + else if ((argno + 1) >= argc) { usage(); leave(EXIT_FAILURE); - } else { + } + else { s = argv[++argno]; } width_g = (int)HDstrtol(s, &rest, 0); - if(0 == width_g) + if (0 == width_g) { no_line_wrap_g = TRUE; - else if(width_g < 0 || *rest) { + } + else if (width_g < 0 || *rest) { + usage(); + leave(EXIT_FAILURE); + } + } + else if (!HDstrncmp(argv[argno], "--s3-cred=", (size_t)10)) { +#ifndef H5_HAVE_ROS3_VFD + HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n"); + usage(); + leave(EXIT_FAILURE); +#else + unsigned nelems = 0; + char * start = NULL; + char * s3cred_src = NULL; + char ** s3cred = NULL; + char const *ccred[3]; + /* try to parse s3 credentials tuple + */ + start = strchr(argv[argno], '='); + if (start == NULL) { + HDfprintf(rawerrorstream, + "Error: Unable to parse null credentials tuple\n" + " For anonymous access, omit \"--s3-cred\" and use only \"--vfd=ros3\"\n\n"); usage(); leave(EXIT_FAILURE); } - } else if('-'!=argv[argno][1]) { + start++; + if (FAIL == parse_tuple((const char *)start, ',', &s3cred_src, &nelems, &s3cred)) { + HDfprintf(rawerrorstream, "Error: Unable to parse S3 credentials\n\n"); + usage(); + leave(EXIT_FAILURE); + } + /* sanity-check tuple count + */ + if (nelems != 3) { + HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n"); + usage(); + leave(EXIT_FAILURE); + } + ccred[0] = (const char *)s3cred[0]; + ccred[1] = (const char *)s3cred[1]; + ccred[2] = (const char *)s3cred[2]; + if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) { + HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n"); + usage(); + leave(EXIT_FAILURE); + } + HDfree(s3cred); + HDfree(s3cred_src); +#endif /* H5_HAVE_ROS3_VFD */ + } + else if (!HDstrncmp(argv[argno], "--hdfs-attrs=", (size_t)13)) { +#ifndef H5_HAVE_LIBHDFS + PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n"); + leave(EXIT_FAILURE); +#else + /* Parse received configuration data and set fapl config struct */ + + hbool_t _debug = FALSE; + unsigned nelems = 0; + char const * start = NULL; + char * props_src = NULL; + char ** props = NULL; + unsigned long k = 0; + + /* try to parse tuple + */ + if (_debug) { + HDfprintf(stderr, "configuring hdfs...\n"); + } + start = argv[argno] + 13; /* should never segfault: worst case of */ + if (*start != '(') { /* null-termintor after '='. */ + + if (_debug) { + HDfprintf(stderr, " no tuple.\n"); + } + usage(); + leave(EXIT_FAILURE); + } + if (FAIL == parse_tuple((const char *)start, ',', &props_src, &nelems, &props)) { + HDfprintf(stderr, " unable to parse tuple.\n"); + usage(); + leave(EXIT_FAILURE); + } + + /* sanity-check tuple count + */ + if (nelems != 5) { + HDfprintf(stderr, " expected 5-ple, got `%d`\n", nelems); + usage(); + leave(EXIT_FAILURE); + } + if (_debug) { + HDfprintf(stderr, " got hdfs-attrs tuple: `(%s,%s,%s,%s,%s)`\n", props[0], props[1], + props[2], props[3], props[4]); + } + + /* Populate fapl configuration structure with given properties. + * WARNING: No error-checking is done on length of input strings... + * Silent overflow is possible, albeit unlikely. + */ + if (HDstrncmp(props[0], "", 1)) { + if (_debug) { + HDfprintf(stderr, " setting namenode name: %s\n", props[0]); + } + HDstrncpy(hdfs_fa.namenode_name, (const char *)props[0], HDstrlen(props[0])); + } + if (HDstrncmp(props[1], "", 1)) { + k = strtoul((const char *)props[1], NULL, 0); + if (errno == ERANGE) { + HDfprintf(stderr, " supposed port number wasn't.\n"); + leave(EXIT_FAILURE); + } + if (_debug) { + HDfprintf(stderr, " setting namenode port: %lu\n", k); + } + hdfs_fa.namenode_port = (int32_t)k; + } + if (HDstrncmp(props[2], "", 1)) { + if (_debug) { + HDfprintf(stderr, " setting kerb cache path: %s\n", props[2]); + } + HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2])); + } + if (HDstrncmp(props[3], "", 1)) { + if (_debug) { + HDfprintf(stderr, " setting username: %s\n", props[3]); + } + HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3])); + } + if (HDstrncmp(props[4], "", 1)) { + k = HDstrtoul((const char *)props[4], NULL, 0); + if (errno == ERANGE) { + HDfprintf(stderr, " supposed buffersize number wasn't.\n"); + leave(EXIT_FAILURE); + } + if (_debug) { + HDfprintf(stderr, " setting stream buffer size: %lu\n", k); + } + hdfs_fa.stream_buffer_size = (int32_t)k; + } + HDfree(props); + HDfree(props_src); +#endif /* H5_HAVE_LIBHDFS */ + } + else if ('-' != argv[argno][1]) { /* Single-letter switches */ - for(s = argv[argno] + 1; *s; s++) { - switch(*s) { + for (s = argv[argno] + 1; *s; s++) { + switch (*s) { case '?': case 'h': /* --help */ usage(); @@ -2692,7 +3015,7 @@ main(int argc, const char *argv[]) /* deprecated -e */ case 'e': /* --errors */ - show_errors_g = TRUE; + enable_error_stack = 1; break; case 'E': /* --external */ @@ -2713,7 +3036,7 @@ main(int argc, const char *argv[]) case 'r': /* --recursive */ recursive_g = TRUE; - fullname_g = TRUE; + fullname_g = TRUE; break; case 'S': /* --simple */ @@ -2741,8 +3064,10 @@ main(int argc, const char *argv[]) usage(); leave(EXIT_FAILURE); } /* end switch */ - } /* end for */ - } else { + } /* end for */ + } + else { + HDfprintf(stderr, "Unknown argument: %s\n", argv[argno]); usage(); leave(EXIT_FAILURE); } @@ -2750,22 +3075,57 @@ main(int argc, const char *argv[]) /* If no arguments remain then print a usage message (instead of doing * absolutely nothing ;-) */ - if(argno >= argc) { + if (argno >= argc) { usage(); leave(EXIT_FAILURE); } /* end if */ /* Check for conflicting arguments */ - if (!is_valid_args()) - { + if (!is_valid_args()) { usage(); leave(EXIT_FAILURE); } - /* Turn off HDF5's automatic error printing unless you're debugging h5ls */ - if(!show_errors_g) - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + if (preferred_driver) { + void *conf_fa = NULL; + if (!HDstrcmp(preferred_driver, "ros3")) { +#ifndef H5_HAVE_ROS3_VFD + HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD not enabled.\n\n"); + usage(); + leave(EXIT_FAILURE); +#else + conf_fa = (void *)&ros3_fa; +#endif /* H5_HAVE_ROS3_VFD */ + } + else if (!HDstrcmp(preferred_driver, "hdfs")) { +#ifndef H5_HAVE_LIBHDFS + PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n"); + leave(EXIT_FAILURE); +#else + conf_fa = (void *)&hdfs_fa; +#endif /* H5_HAVE_LIBHDFS */ + } + + if (conf_fa != NULL) { + HDassert(fapl_id == H5P_DEFAULT); + fapl_id = H5Pcreate(H5P_FILE_ACCESS); + if (fapl_id < 0) { + HDfprintf(rawerrorstream, "Error: Unable to create fapl entry\n\n"); + leave(EXIT_FAILURE); + } + if (0 == h5tools_set_configured_fapl(fapl_id, preferred_driver, conf_fa)) { + HDfprintf(rawerrorstream, "Error: Unable to set fapl\n\n"); + usage(); + leave(EXIT_FAILURE); + } + } + } /* preferred_driver defined */ + + if (enable_error_stack > 0) { + H5Eset_auto2(H5E_DEFAULT, func, edata); + H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); + } /* Each remaining argument is an hdf5 file followed by an optional slash * and object name. @@ -2779,51 +3139,58 @@ main(int argc, const char *argv[]) * chops off the last component. If we reach the beginning of the name * then there must have been something wrong with the file (perhaps it * doesn't exist). */ - show_file_name_g = (argc-argno > 1); /*show file names if more than one*/ - while(argno < argc) { - H5L_info_t li; - iter_t iter; + show_file_name_g = (argc - argno > 1); /*show file names if more than one*/ + while (argno < argc) { + H5L_info_t li; + iter_t iter; symlink_trav_t symlink_list; - size_t u; + size_t u; - fname = HDstrdup(argv[argno++]); - oname = NULL; - file = -1; + fname = HDstrdup(argv[argno++]); + oname = NULL; + file_id = H5I_INVALID_HID; - while(fname && *fname) { - file = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, sizeof drivername); + while (fname && *fname) { + if (fapl_id != H5P_DEFAULT) { + file_id = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id); + } + else { + file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, + sizeof drivername); + } - if(file >= 0) { - if(verbose_g) + if (file_id >= 0) { + if (verbose_g) PRINTSTREAM(rawoutstream, "Opened \"%s\" with %s driver.\n", fname, drivername); break; /*success*/ - } /* end if */ + } /* end if */ /* Shorten the file name; lengthen the object name */ - x = oname; + x = oname; oname = HDstrrchr(fname, '/'); - if(x) + if (x) *x = '/'; - if(!oname) + if (!oname) break; *oname = '\0'; } /* end while */ - if(file < 0) { - HDfprintf(rawerrorstream, "%s: unable to open file\n", argv[argno-1]); + if (file_id < 0) { + HDfprintf(rawerrorstream, "%s: unable to open file\n", argv[argno - 1]); HDfree(fname); err_exit = 1; continue; } /* end if */ - if(oname) { + if (oname) { /* Always use absolute paths to avoid confusion, keep track of where * to begin path name output */ - *oname = '/'; + *oname = '/'; iter.base_len = HDstrlen(oname); - iter.base_len -= oname[iter.base_len-1] == '/'; + iter.base_len -= oname[iter.base_len - 1] == '/'; x = oname; - if(NULL == (oname = HDstrdup(oname))) { + if (NULL == (oname = HDstrdup(oname))) { HDfprintf(rawerrorstream, "memory allocation failed\n"); + H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } *x = '\0'; @@ -2831,67 +3198,70 @@ main(int argc, const char *argv[]) * is displayed if it is a link or non-group object */ iter.name_start = 1; } - if(!oname || !*oname) { + if (!oname || !*oname) { oname = root_name; - if(recursive_g) + if (recursive_g) display_root_g = TRUE; - iter.base_len = 0; + iter.base_len = 0; iter.name_start = 0; /* Use x to remember if we have allocated space in oname */ x = NULL; } /* end if */ /* Remember the file information for later */ - iter.fname = fname; - iter.fid = file; - iter.gid = -1; - iter.symlink_target = FALSE; - iter.symlink_list = &symlink_list; + iter.fname = fname; + iter.fid = file_id; + iter.gid = H5I_INVALID_HID; + iter.symlink_target = FALSE; + iter.symlink_list = &symlink_list; iter.symlink_list->dangle_link = FALSE; /* Initialize list of visited symbolic links */ symlink_list.nused = symlink_list.nalloc = 0; - symlink_list.objs = NULL; + symlink_list.objs = NULL; /* Check for root group as object name */ - if(HDstrcmp(oname, root_name)) { + if (HDstrcmp(oname, root_name)) { /* Check the type of link given */ - if(H5Lget_info(file, oname, &li, H5P_DEFAULT) < 0) { - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ - h5tool_format_t *info = &ls_dataformat; + if (H5Lget_info(file_id, oname, &li, H5P_DEFAULT) < 0) { + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t * info = &ls_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); h5tools_str_reset(&buffer); print_obj_name(&buffer, &iter, oname, "**NOT FOUND**"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, + (hsize_t)0, (hsize_t)0); + H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } /* end if */ - } /* end if */ + } /* end if */ else li.type = H5L_TYPE_HARD; /* Open the object and display it's information */ - if(li.type == H5L_TYPE_HARD) { - if(visit_obj(file, oname, &iter) < 0) + if (li.type == H5L_TYPE_HARD) { + if (visit_obj(file_id, oname, &iter) < 0) { + H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); + } } /* end if(li.type == H5L_TYPE_HARD) */ else { /* Specified name is not for object -- list that link */ - /* Use file ID for root group ID */ - iter.gid = file; + /* Use file_id ID for root group ID */ + iter.gid = file_id; list_lnk(oname, &li, &iter); } - H5Fclose(file); + H5Fclose(file_id); HDfree(fname); - if(x) + if (x) HDfree(oname); - for(u=0; u < symlink_list.nused; u++) - { + for (u = 0; u < symlink_list.nused; u++) { if (symlink_list.objs[u].type == H5L_TYPE_EXTERNAL) HDfree(symlink_list.objs[u].file); @@ -2904,9 +3274,17 @@ main(int argc, const char *argv[]) err_exit = 1; } /* end while */ + if (fapl_id != H5P_DEFAULT) { + if (0 < H5Pclose(fapl_id)) { + HDfprintf(rawerrorstream, "Error: Unable to set close fapl entry\n\n"); + H5Eset_auto2(H5E_DEFAULT, func, edata); + leave(EXIT_FAILURE); + } + } + + H5Eset_auto2(H5E_DEFAULT, func, edata); if (err_exit) leave(EXIT_FAILURE); else leave(EXIT_SUCCESS); } /* end main() */ - |