1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/* $Id$ */
/*
* This file contains macros & information for file access
*/
#ifndef _H5Fprivate_H
#define _H5Fprivate_H
#include "H5Fpublic.h"
/* This is a near top-level header! Try not to include much! */
#include "H5FDpublic.h" /*file drivers */
typedef struct H5F_t H5F_t;
/*
* Encode and decode macros for file meta-data.
* Currently, all file meta-data is little-endian.
*/
# define INT16ENCODE(p, i) { \
*(p) = (uint8_t)( (unsigned)(i) & 0xff); (p)++; \
*(p) = (uint8_t)(((unsigned)(i) >> 8) & 0xff); (p)++; \
}
# define UINT16ENCODE(p, i) { \
*(p) = (uint8_t)( (i) & 0xff); (p)++; \
*(p) = (uint8_t)(((unsigned)(i) >> 8) & 0xff); (p)++; \
}
# define INT32ENCODE(p, i) { \
*(p) = (uint8_t)( (uint32_t)(i) & 0xff); (p)++; \
*(p) = (uint8_t)(((uint32_t)(i) >> 8) & 0xff); (p)++; \
*(p) = (uint8_t)(((uint32_t)(i) >> 16) & 0xff); (p)++; \
*(p) = (uint8_t)(((uint32_t)(i) >> 24) & 0xff); (p)++; \
}
# define UINT32ENCODE(p, i) { \
*(p) = (uint8_t)( (i) & 0xff); (p)++; \
*(p) = (uint8_t)(((i) >> 8) & 0xff); (p)++; \
*(p) = (uint8_t)(((i) >> 16) & 0xff); (p)++; \
*(p) = (uint8_t)(((i) >> 24) & 0xff); (p)++; \
}
# define INT64ENCODE(p, n) { \
int64_t _n = (n); \
size_t _i; \
uint8_t *_p = (uint8_t*)(p); \
for (_i=0; _i<sizeof(int64_t); _i++, _n>>=8) { \
*_p++ = (uint8_t)(_n & 0xff); \
} \
for (/*void*/; _i<8; _i++) { \
*_p++ = (n)<0 ? 0xff : 0; \
} \
(p) = (uint8_t*)(p)+8; \
}
# define UINT64ENCODE(p, n) { \
uint64_t _n = (n); \
size_t _i; \
uint8_t *_p = (uint8_t*)(p); \
for (_i=0; _i<sizeof(uint64_t); _i++, _n>>=8) { \
*_p++ = (uint8_t)(_n & 0xff); \
} \
for (/*void*/; _i<8; _i++) { \
*_p++ = 0; \
} \
(p) = (uint8_t*)(p)+8; \
}
/* DECODE converts little endian bytes pointed by p to integer values and store
* it in i. For signed values, need to do sign-extension when converting
* the last byte which carries the sign bit.
* The macros does not require i be of a certain byte sizes. It just requires
* i be big enough to hold the intended value range. E.g. INT16DECODE works
* correctly even if i is actually a 64bit int like in a Cray.
*/
# define INT16DECODE(p, i) { \
(i) = (int16_t)((*(p) & 0xff)); (p)++; \
(i) |= (int16_t)(((*(p) & 0xff) << 8) | \
((*(p) & 0x80) ? ~0xffff : 0x0)); (p)++; \
}
# define UINT16DECODE(p, i) { \
(i) = (uint16_t) (*(p) & 0xff); (p)++; \
(i) |= (uint16_t)((*(p) & 0xff) << 8); (p)++; \
}
# define INT32DECODE(p, i) { \
(i) = ( *(p) & 0xff); (p)++; \
(i) |= ((int32_t)(*(p) & 0xff) << 8); (p)++; \
(i) |= ((int32_t)(*(p) & 0xff) << 16); (p)++; \
(i) |= ((int32_t)(((*(p) & 0xff) << 24) | \
((*(p) & 0x80) ? ~0xffffffff : 0x0))); (p)++; \
}
# define UINT32DECODE(p, i) { \
(i) = (uint32_t)(*(p) & 0xff); (p)++; \
(i) |= ((uint32_t)(*(p) & 0xff) << 8); (p)++; \
(i) |= ((uint32_t)(*(p) & 0xff) << 16); (p)++; \
(i) |= ((uint32_t)(*(p) & 0xff) << 24); (p)++; \
}
# define INT64DECODE(p, n) { \
/* WE DON'T CHECK FOR OVERFLOW! */ \
size_t _i; \
n = 0; \
(p) += 8; \
for (_i=0; _i<sizeof(int64_t); _i++) { \
n = (n<<8) | *(--p); \
} \
(p) += 8; \
}
# define UINT64DECODE(p, n) { \
/* WE DON'T CHECK FOR OVERFLOW! */ \
size_t _i; \
n = 0; \
(p) += 8; \
for (_i=0; _i<sizeof(uint64_t); _i++) { \
n = (n<<8) | *(--p); \
} \
(p) += 8; \
}
#define NBYTEENCODE(d, s, n) { HDmemcpy(d,s,n); p+=n }
/*
* Note: the NBYTEDECODE macro is backwards from the memcpy() routine, in
* the spirit of the other DECODE macros.
*/
#define NBYTEDECODE(s, d, n) { HDmemcpy(d,s,n); p+=n }
/* Address-related macros */
#define H5F_addr_overflow(X,Z) (HADDR_UNDEF==(X) || \
HADDR_UNDEF==(X)+(haddr_t)(Z) || \
(X)+(haddr_t)(Z)<(X))
#define H5F_addr_hash(X,M) ((unsigned)((X)%(M)))
#define H5F_addr_defined(X) (X!=HADDR_UNDEF)
#define H5F_addr_eq(X,Y) ((X)!=HADDR_UNDEF && \
(Y)!=HADDR_UNDEF && \
(X)==(Y))
#define H5F_addr_ne(X,Y) (!H5F_addr_eq((X),(Y)))
#define H5F_addr_lt(X,Y) ((X)!=HADDR_UNDEF && \
(Y)!=HADDR_UNDEF && \
(X)<(Y))
#define H5F_addr_le(X,Y) ((X)!=HADDR_UNDEF && \
(Y)!=HADDR_UNDEF && \
(X)<=(Y))
#define H5F_addr_gt(X,Y) ((X)!=HADDR_UNDEF && \
(Y)!=HADDR_UNDEF && \
(X)>(Y))
#define H5F_addr_ge(X,Y) ((X)!=HADDR_UNDEF && \
(Y)!=HADDR_UNDEF && \
(X)>=(Y))
#define H5F_addr_cmp(X,Y) (H5F_addr_eq(X,Y)?0: \
(H5F_addr_lt(X, Y)?-1:1))
#define H5F_addr_pow2(N) ((haddr_t)1<<(N))
#define H5F_addr_overlap(O1,L1,O2,L2) ((O1<O2 && (O1+L1)>O2) || \
(O1>=O2 && O1<(O2+L2)))
/* size of size_t and off_t as they exist on disk */
#ifdef H5F_PACKAGE
#define H5F_SIZEOF_ADDR(F) ((F)->shared->fcpl->sizeof_addr)
#define H5F_SIZEOF_SIZE(F) ((F)->shared->fcpl->sizeof_size)
#else /* H5F_PACKAGE */
#define H5F_SIZEOF_ADDR(F) (H5F_sizeof_addr(F))
#define H5F_SIZEOF_SIZE(F) (H5F_sizeof_size(F))
#endif /* H5F_PACKAGE */
__DLL__ size_t H5F_sizeof_addr(H5F_t *f);
__DLL__ size_t H5F_sizeof_size(H5F_t *f);
/* Macros to encode/decode offset/length's for storing in the file */
#ifdef NOT_YET
#define H5F_ENCODE_OFFSET(f,p,o) (H5F_SIZEOF_ADDR(f)==4 ? UINT32ENCODE(p,o) \
: H5F_SIZEOF_ADDR(f)==8 ? UINT64ENCODE(p,o) \
: H5F_SIZEOF_ADDR(f)==2 ? UINT16ENCODE(p,o) \
: H5FPencode_unusual_offset(f,&(p),(uint8_t*)&(o)))
#else /* NOT_YET */
#define H5F_ENCODE_OFFSET(f,p,o) switch(H5F_SIZEOF_ADDR(f)) { \
case 4: UINT32ENCODE(p,o); break; \
case 8: UINT64ENCODE(p,o); break; \
case 2: UINT16ENCODE(p,o); break; \
}
#endif /* NOT_YET */
#define H5F_DECODE_OFFSET(f,p,o) switch (H5F_SIZEOF_ADDR (f)) { \
case 4: UINT32DECODE (p, o); break; \
case 8: UINT64DECODE (p, o); break; \
case 2: UINT16DECODE (p, o); break; \
}
#define H5F_ENCODE_LENGTH(f,p,l) switch(H5F_SIZEOF_SIZE(f)) { \
case 4: UINT32ENCODE(p,l); break; \
case 8: UINT64ENCODE(p,l); break; \
case 2: UINT16ENCODE(p,l); break; \
}
#define H5F_DECODE_LENGTH(f,p,l) switch(H5F_SIZEOF_SIZE(f)) { \
case 4: UINT32DECODE(p,l); break; \
case 8: UINT64DECODE(p,l); break; \
case 2: UINT16DECODE(p,l); break; \
}
/*
* File-creation property list.
*/
typedef struct H5F_create_t {
hsize_t userblock_size; /* Size of the file user block in bytes */
int sym_leaf_k; /* 1/2 rank for symbol table leaf nodes */
int btree_k[8]; /* 1/2 rank for btree internal nodes */
size_t sizeof_addr; /* Number of bytes in an address */
size_t sizeof_size; /* Number of bytes for obj sizes */
int bootblock_ver; /* Version # of the bootblock */
int freespace_ver; /* Version # of the free-space information*/
int objectdir_ver; /* Version # of the object directory format*/
int sharedheader_ver;/* Version # of the shared header format */
} H5F_create_t;
/*
* File-access property list.
*/
typedef struct H5F_access_t {
int mdc_nelmts; /* Size of meta data cache (elements) */
int rdcc_nelmts; /* Size of raw data chunk cache (elmts) */
size_t rdcc_nbytes; /* Size of raw data chunk cache (bytes) */
double rdcc_w0; /* Preempt read chunks first? [0.0..1.0]*/
hsize_t threshold; /* Threshold for alignment */
hsize_t alignment; /* Alignment */
size_t meta_block_size; /* Minimum metadata allocation block size (when aggregating metadata allocations) */
size_t sdata_block_size; /* Minimum "small data" allocation block size (when aggregating "small data" allocations) */
hsize_t sieve_buf_size; /* Maximum sieve buffer size (when data sieving is allowed by file driver) */
unsigned gc_ref; /* Garbage-collect references? */
hid_t driver_id; /* File driver ID */
void *driver_info; /* File driver specific information */
} H5F_access_t;
/* Mount property list */
typedef struct H5F_mprop_t {
hbool_t local; /* Are absolute symlinks local to file? */
} H5F_mprop_t;
/* library variables */
__DLLVAR__ const H5F_create_t H5F_create_dflt;
__DLLVAR__ H5F_access_t H5F_access_dflt;
__DLLVAR__ const H5F_mprop_t H5F_mount_dflt;
/* Forward declarations for prototypes arguments */
struct H5O_layout_t;
struct H5O_efl_t;
struct H5O_pline_t;
struct H5O_fill_t;
struct H5G_entry_t;
struct H5S_t;
/* Private functions, not part of the publicly documented API */
__DLL__ herr_t H5F_init(void);
__DLL__ unsigned H5F_get_intent(H5F_t *f);
__DLL__ hid_t H5F_get_driver_id(H5F_t *f);
__DLL__ herr_t H5F_get_fileno(const H5F_t *f, unsigned long *filenum);
/* Functions that operate on array storage */
__DLL__ herr_t H5F_arr_create(H5F_t *f,
struct H5O_layout_t *layout /*in,out*/);
__DLL__ herr_t H5F_arr_read (H5F_t *f, hid_t dxpl_id,
const struct H5O_layout_t *layout,
const struct H5O_pline_t *pline,
const struct H5O_fill_t *fill,
const struct H5O_efl_t *efl,
const hsize_t _hslab_size[],
const hsize_t mem_size[],
const hssize_t mem_offset[],
const hssize_t file_offset[], void *_buf/*out*/);
__DLL__ herr_t H5F_arr_write (H5F_t *f, hid_t dxpl_id,
const struct H5O_layout_t *layout,
const struct H5O_pline_t *pline,
const struct H5O_fill_t *fill,
const struct H5O_efl_t *efl,
const hsize_t _hslab_size[],
const hsize_t mem_size[],
const hssize_t mem_offset[],
const hssize_t file_offset[], const void *_buf);
/* Functions that operate on blocks of bytes wrt boot block */
__DLL__ herr_t H5F_block_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, hsize_t size,
hid_t dxpl_id, void *buf/*out*/);
__DLL__ herr_t H5F_block_write(H5F_t *f, H5FD_mem_t type, haddr_t addr,
hsize_t size, hid_t dxpl_id, const void *buf);
/* Functions that operate on byte sequences */
__DLL__ herr_t H5F_seq_read(H5F_t *f, hid_t dxpl_id,
const struct H5O_layout_t *layout, const struct H5O_pline_t *pline,
const struct H5O_fill_t *fill, const struct H5O_efl_t *efl,
const struct H5S_t *file_space, size_t elmt_size, hsize_t seq_len,
hsize_t file_offset, void *_buf/*out*/);
__DLL__ herr_t H5F_seq_write (H5F_t *f, hid_t dxpl_id,
const struct H5O_layout_t *layout, const struct H5O_pline_t *pline,
const struct H5O_fill_t *fill, const struct H5O_efl_t *efl,
const struct H5S_t *file_space, size_t elmt_size, hsize_t seq_len,
hsize_t file_offset, const void *_buf);
/* Functions that operate on indexed storage */
#ifdef H5_HAVE_PARALLEL
__DLL__ herr_t H5F_istore_allocate (H5F_t *f, hid_t dxpl_id,
const struct H5O_layout_t *layout,
const hsize_t *space_dim,
const struct H5O_pline_t *pline,
const struct H5O_fill_t *fill);
#endif /* H5_HAVE_PARALLEL */
__DLL__ hsize_t H5F_istore_allocated(H5F_t *f, unsigned ndims, haddr_t addr);
__DLL__ herr_t H5F_istore_dump_btree(H5F_t *f, FILE *stream, unsigned ndims,
haddr_t addr);
/* Address-related functions */
__DLL__ void H5F_addr_encode(H5F_t *, uint8_t** /*in,out*/, haddr_t);
__DLL__ void H5F_addr_decode(H5F_t *, const uint8_t** /*in,out*/,
haddr_t* /*out*/);
__DLL__ herr_t H5F_addr_pack(H5F_t UNUSED *f, haddr_t *addr_p /*out*/,
const unsigned long objno[2]);
#endif
|