1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Main driver of the Parallel HDF5 tests
*/
#include "hdf5.h"
#include "testphdf5.h"
#ifndef PATH_MAX
#define PATH_MAX 512
#endif /* !PATH_MAX */
/* global variables */
int dim0;
int dim1;
int chunkdim0;
int chunkdim1;
int nerrors = 0; /* errors count */
int ndatasets = 300; /* number of datasets to create*/
int ngroups = 512; /* number of groups to create in root
* group. */
int facc_type = FACC_MPIO; /*Test file access type */
int dxfer_coll_type = DXFER_COLLECTIVE_IO;
H5E_auto2_t old_func; /* previous error handler */
void *old_client_data; /* previous error handler arg.*/
/* other option flags */
/* FILENAME and filenames must have the same number of names.
* Use PARATESTFILE in general and use a separated filename only if the file
* created in one test is accessed by a different test.
* filenames[0] is reserved as the file name for PARATESTFILE.
*/
#define NFILENAME 2
/* #define PARATESTFILE filenames[0] */
const char *FILENAME[NFILENAME] = {"ParaTest.h5", NULL};
char filenames[NFILENAME][PATH_MAX];
hid_t fapl; /* file access property list */
#ifdef USE_PAUSE
/* pause the process for a moment to allow debugger to attach if desired. */
/* Will pause more if greenlight file is not present but will eventually */
/* continue. */
#include <sys/types.h>
#include <sys/stat.h>
void
pause_proc(void)
{
int pid;
h5_stat_t statbuf;
char greenlight[] = "go";
int maxloop = 10;
int loops = 0;
int time_int = 10;
/* mpi variables */
int mpi_size, mpi_rank;
int mpi_namelen;
char mpi_name[MPI_MAX_PROCESSOR_NAME];
pid = getpid();
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Get_processor_name(mpi_name, &mpi_namelen);
if (MAINPROCESS)
while ((HDstat(greenlight, &statbuf) == -1) && loops < maxloop) {
if (!loops++) {
printf("Proc %d (%*s, %d): to debug, attach %d\n", mpi_rank, mpi_namelen, mpi_name, pid, pid);
}
printf("waiting(%ds) for file %s ...\n", time_int, greenlight);
fflush(stdout);
HDsleep(time_int);
}
MPI_Barrier(MPI_COMM_WORLD);
}
/* Use the Profile feature of MPI to call the pause_proc() */
int
MPI_Init(int *argc, char ***argv)
{
int ret_code;
ret_code = PMPI_Init(argc, argv);
pause_proc();
return (ret_code);
}
#endif /* USE_PAUSE */
/*
* Show command usage
*/
static void
usage(void)
{
printf(" [-r] [-w] [-m<n_datasets>] [-n<n_groups>] "
"[-o] [-f <prefix>] [-d <dim0> <dim1>]\n");
printf("\t-m<n_datasets>"
"\tset number of datasets for the multiple dataset test\n");
printf("\t-n<n_groups>"
"\tset number of groups for the multiple group test\n");
#if 0
printf("\t-f <prefix>\tfilename prefix\n");
#endif
printf("\t-2\t\tuse Split-file together with MPIO\n");
printf("\t-d <factor0> <factor1>\tdataset dimensions factors. Defaults (%d,%d)\n", ROW_FACTOR,
COL_FACTOR);
printf("\t-c <dim0> <dim1>\tdataset chunk dimensions. Defaults (dim0/10,dim1/10)\n");
printf("\n");
}
/*
* parse the command line options
*/
static int
parse_options(int argc, char **argv)
{
int mpi_size, mpi_rank; /* mpi variables */
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
/* setup default chunk-size. Make sure sizes are > 0 */
chunkdim0 = (dim0 + 9) / 10;
chunkdim1 = (dim1 + 9) / 10;
while (--argc) {
if (**(++argv) != '-') {
break;
}
else {
switch (*(*argv + 1)) {
case 'm':
ndatasets = atoi((*argv + 1) + 1);
if (ndatasets < 0) {
nerrors++;
return (1);
}
break;
case 'n':
ngroups = atoi((*argv + 1) + 1);
if (ngroups < 0) {
nerrors++;
return (1);
}
break;
#if 0
case 'f': if (--argc < 1) {
nerrors++;
return(1);
}
if (**(++argv) == '-') {
nerrors++;
return(1);
}
paraprefix = *argv;
break;
#endif
case 'i': /* Collective MPI-IO access with independent IO */
dxfer_coll_type = DXFER_INDEPENDENT_IO;
break;
case '2': /* Use the split-file driver with MPIO access */
/* Can use $HDF5_METAPREFIX to define the */
/* meta-file-prefix. */
facc_type = FACC_MPIO | FACC_SPLIT;
break;
case 'd': /* dimensizes */
if (--argc < 2) {
nerrors++;
return (1);
}
dim0 = atoi(*(++argv)) * mpi_size;
argc--;
dim1 = atoi(*(++argv)) * mpi_size;
/* set default chunkdim sizes too */
chunkdim0 = (dim0 + 9) / 10;
chunkdim1 = (dim1 + 9) / 10;
break;
case 'c': /* chunk dimensions */
if (--argc < 2) {
nerrors++;
return (1);
}
chunkdim0 = atoi(*(++argv));
argc--;
chunkdim1 = atoi(*(++argv));
break;
case 'h': /* print help message--return with nerrors set */
return (1);
default:
printf("Illegal option(%s)\n", *argv);
nerrors++;
return (1);
}
}
} /*while*/
/* check validity of dimension and chunk sizes */
if (dim0 <= 0 || dim1 <= 0) {
printf("Illegal dim sizes (%d, %d)\n", dim0, dim1);
nerrors++;
return (1);
}
if (chunkdim0 <= 0 || chunkdim1 <= 0) {
printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1);
nerrors++;
return (1);
}
/* Make sure datasets can be divided into equal portions by the processes */
if ((dim0 % mpi_size) || (dim1 % mpi_size)) {
if (MAINPROCESS)
printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n", dim0, dim1, mpi_size);
nerrors++;
return (1);
}
/* compose the test filenames */
{
int i, n;
n = sizeof(FILENAME) / sizeof(FILENAME[0]) - 1; /* exclude the NULL */
for (i = 0; i < n; i++)
strncpy(filenames[i], FILENAME[i], PATH_MAX);
#if 0 /* no support for VFDs right now */
if (h5_fixname(FILENAME[i], fapl, filenames[i], PATH_MAX) == NULL) {
printf("h5_fixname failed\n");
nerrors++;
return (1);
}
#endif
if (MAINPROCESS) {
printf("Test filenames are:\n");
for (i = 0; i < n; i++)
printf(" %s\n", filenames[i]);
}
}
return (0);
}
/*
* Create the appropriate File access property list
*/
hid_t
create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
{
hid_t ret_pl = -1;
herr_t ret; /* generic return value */
int mpi_rank; /* mpi variables */
/* need the rank for error checking macros */
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
ret_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((ret_pl >= 0), "H5P_FILE_ACCESS");
if (l_facc_type == FACC_DEFAULT)
return (ret_pl);
if (l_facc_type == FACC_MPIO) {
/* set Parallel access with communicator */
ret = H5Pset_fapl_mpio(ret_pl, comm, info);
VRFY((ret >= 0), "");
ret = H5Pset_all_coll_metadata_ops(ret_pl, true);
VRFY((ret >= 0), "");
ret = H5Pset_coll_metadata_write(ret_pl, true);
VRFY((ret >= 0), "");
return (ret_pl);
}
if (l_facc_type == (FACC_MPIO | FACC_SPLIT)) {
hid_t mpio_pl;
mpio_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((mpio_pl >= 0), "");
/* set Parallel access with communicator */
ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
VRFY((ret >= 0), "");
/* setup file access template */
ret_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((ret_pl >= 0), "");
/* set Parallel access with communicator */
ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
H5Pclose(mpio_pl);
return (ret_pl);
}
/* unknown file access types */
return (ret_pl);
}
int
main(int argc, char **argv)
{
int mpi_size, mpi_rank; /* mpi variables */
herr_t ret;
#if 0
H5Ptest_param_t ndsets_params, ngroups_params;
H5Ptest_param_t collngroups_params;
H5Ptest_param_t io_mode_confusion_params;
H5Ptest_param_t rr_obj_flush_confusion_params;
#endif
#ifndef H5_HAVE_WIN32_API
/* Un-buffer the stdout and stderr */
HDsetbuf(stderr, NULL);
HDsetbuf(stdout, NULL);
#endif
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
dim0 = ROW_FACTOR * mpi_size;
dim1 = COL_FACTOR * mpi_size;
if (MAINPROCESS) {
printf("===================================\n");
printf("PHDF5 TESTS START\n");
printf("===================================\n");
}
/* Attempt to turn off atexit post processing so that in case errors
* happen during the test and the process is aborted, it will not get
* hung in the atexit post processing in which it may try to make MPI
* calls. By then, MPI calls may not work.
*/
if (H5dont_atexit() < 0) {
printf("Failed to turn off atexit processing. Continue.\n");
};
H5open();
/* h5_show_hostname(); */
#if 0
memset(filenames, 0, sizeof(filenames));
for (int i = 0; i < NFILENAME; i++) {
if (NULL == (filenames[i] = malloc(PATH_MAX))) {
printf("couldn't allocate filename array\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
}
#endif
/* Set up file access property list with parallel I/O access */
fapl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((fapl >= 0), "H5Pcreate succeeded");
vol_cap_flags_g = H5VL_CAP_FLAG_NONE;
/* Get the capability flag of the VOL connector being used */
ret = H5Pget_vol_cap_flags(fapl, &vol_cap_flags_g);
VRFY((ret >= 0), "H5Pget_vol_cap_flags succeeded");
/* Initialize testing framework */
/* TestInit(argv[0], usage, parse_options); */
if (parse_options(argc, argv)) {
usage();
return 1;
}
/* Tests are generally arranged from least to most complexity... */
#if 0
AddTest("mpiodup", test_fapl_mpio_dup, NULL,
"fapl_mpio duplicate", NULL);
#endif
if (MAINPROCESS) {
printf("fapl_mpio duplicate\n");
fflush(stdout);
}
test_fapl_mpio_dup();
#if 0
AddTest("split", test_split_comm_access, NULL,
"dataset using split communicators", PARATESTFILE);
AddTest("props", test_file_properties, NULL,
"Coll Metadata file property settings", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("dataset using split communicators\n");
fflush(stdout);
}
test_split_comm_access();
if (MAINPROCESS) {
printf("Coll Metadata file property settings\n");
fflush(stdout);
}
test_file_properties();
#if 0
AddTest("idsetw", dataset_writeInd, NULL,
"dataset independent write", PARATESTFILE);
AddTest("idsetr", dataset_readInd, NULL,
"dataset independent read", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("dataset independent write\n");
fflush(stdout);
}
dataset_writeInd();
if (MAINPROCESS) {
printf("dataset independent read\n");
fflush(stdout);
}
dataset_readInd();
#if 0
AddTest("cdsetw", dataset_writeAll, NULL,
"dataset collective write", PARATESTFILE);
AddTest("cdsetr", dataset_readAll, NULL,
"dataset collective read", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("dataset collective write\n");
fflush(stdout);
}
dataset_writeAll();
if (MAINPROCESS) {
printf("dataset collective read\n");
fflush(stdout);
}
dataset_readAll();
#if 0
AddTest("eidsetw", extend_writeInd, NULL,
"extendible dataset independent write", PARATESTFILE);
AddTest("eidsetr", extend_readInd, NULL,
"extendible dataset independent read", PARATESTFILE);
AddTest("ecdsetw", extend_writeAll, NULL,
"extendible dataset collective write", PARATESTFILE);
AddTest("ecdsetr", extend_readAll, NULL,
"extendible dataset collective read", PARATESTFILE);
AddTest("eidsetw2", extend_writeInd2, NULL,
"extendible dataset independent write #2", PARATESTFILE);
AddTest("selnone", none_selection_chunk, NULL,
"chunked dataset with none-selection", PARATESTFILE);
AddTest("calloc", test_chunk_alloc, NULL,
"parallel extend Chunked allocation on serial file", PARATESTFILE);
AddTest("fltread", test_filter_read, NULL,
"parallel read of dataset written serially with filters", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("extendible dataset independent write\n");
fflush(stdout);
}
extend_writeInd();
if (MAINPROCESS) {
printf("extendible dataset independent read\n");
fflush(stdout);
}
extend_readInd();
if (MAINPROCESS) {
printf("extendible dataset collective write\n");
fflush(stdout);
}
extend_writeAll();
if (MAINPROCESS) {
printf("extendible dataset collective read\n");
fflush(stdout);
}
extend_readAll();
if (MAINPROCESS) {
printf("extendible dataset independent write #2\n");
fflush(stdout);
}
extend_writeInd2();
if (MAINPROCESS) {
printf("chunked dataset with none-selection\n");
fflush(stdout);
}
none_selection_chunk();
if (MAINPROCESS) {
printf("parallel extend Chunked allocation on serial file\n");
fflush(stdout);
}
test_chunk_alloc();
if (MAINPROCESS) {
printf("parallel read of dataset written serially with filters\n");
fflush(stdout);
}
test_filter_read();
#ifdef H5_HAVE_FILTER_DEFLATE
#if 0
AddTest("cmpdsetr", compress_readAll, NULL,
"compressed dataset collective read", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("compressed dataset collective read\n");
fflush(stdout);
}
compress_readAll();
#endif /* H5_HAVE_FILTER_DEFLATE */
#if 0
AddTest("zerodsetr", zero_dim_dset, NULL,
"zero dim dset", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("zero dim dset\n");
fflush(stdout);
}
zero_dim_dset();
#if 0
ndsets_params.name = PARATESTFILE;
ndsets_params.count = ndatasets;
AddTest("ndsetw", multiple_dset_write, NULL,
"multiple datasets write", &ndsets_params);
#endif
if (MAINPROCESS) {
printf("multiple datasets write\n");
fflush(stdout);
}
multiple_dset_write();
#if 0
ngroups_params.name = PARATESTFILE;
ngroups_params.count = ngroups;
AddTest("ngrpw", multiple_group_write, NULL,
"multiple groups write", &ngroups_params);
AddTest("ngrpr", multiple_group_read, NULL,
"multiple groups read", &ngroups_params);
#endif
if (MAINPROCESS) {
printf("multiple groups write\n");
fflush(stdout);
}
multiple_group_write();
if (MAINPROCESS) {
printf("multiple groups read\n");
fflush(stdout);
}
multiple_group_read();
#if 0
AddTest("compact", compact_dataset, NULL,
"compact dataset test", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("compact dataset test\n");
fflush(stdout);
}
compact_dataset();
#if 0
collngroups_params.name = PARATESTFILE;
collngroups_params.count = ngroups;
/* combined cngrpw and ingrpr tests because ingrpr reads file created by cngrpw. */
AddTest("cngrpw-ingrpr", collective_group_write_independent_group_read, NULL,
"collective grp/dset write - independent grp/dset read",
&collngroups_params);
#ifndef H5_HAVE_WIN32_API
AddTest("bigdset", big_dataset, NULL,
"big dataset test", PARATESTFILE);
#else
printf("big dataset test will be skipped on Windows (JIRA HDDFV-8064)\n");
#endif
#endif
if (MAINPROCESS) {
printf("collective grp/dset write - independent grp/dset read\n");
fflush(stdout);
}
collective_group_write_independent_group_read();
if (MAINPROCESS) {
printf("big dataset test\n");
fflush(stdout);
}
big_dataset();
#if 0
AddTest("fill", dataset_fillvalue, NULL,
"dataset fill value", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("dataset fill value\n");
fflush(stdout);
}
dataset_fillvalue();
#if 0
AddTest("cchunk1",
coll_chunk1,NULL, "simple collective chunk io",PARATESTFILE);
AddTest("cchunk2",
coll_chunk2,NULL, "noncontiguous collective chunk io",PARATESTFILE);
AddTest("cchunk3",
coll_chunk3,NULL, "multi-chunk collective chunk io",PARATESTFILE);
AddTest("cchunk4",
coll_chunk4,NULL, "collective chunk io with partial non-selection ",PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("simple collective chunk io\n");
fflush(stdout);
}
coll_chunk1();
if (MAINPROCESS) {
printf("noncontiguous collective chunk io\n");
fflush(stdout);
}
coll_chunk2();
if (MAINPROCESS) {
printf("multi-chunk collective chunk io\n");
fflush(stdout);
}
coll_chunk3();
if (MAINPROCESS) {
printf("collective chunk io with partial non-selection\n");
fflush(stdout);
}
coll_chunk4();
if ((mpi_size < 3) && MAINPROCESS) {
printf("Collective chunk IO optimization APIs ");
printf("needs at least 3 processes to participate\n");
printf("Collective chunk IO API tests will be skipped \n");
}
#if 0
AddTest((mpi_size <3)? "-cchunk5":"cchunk5" ,
coll_chunk5,NULL,
"linked chunk collective IO without optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk6" : "cchunk6",
coll_chunk6,NULL,
"multi-chunk collective IO with direct request",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk7" : "cchunk7",
coll_chunk7,NULL,
"linked chunk collective IO with optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk8" : "cchunk8",
coll_chunk8,NULL,
"linked chunk collective IO transferring to multi-chunk",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk9" : "cchunk9",
coll_chunk9,NULL,
"multiple chunk collective IO with optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk10" : "cchunk10",
coll_chunk10,NULL,
"multiple chunk collective IO transferring to independent IO",PARATESTFILE);
#endif
if (mpi_size >= 3) {
if (MAINPROCESS) {
printf("linked chunk collective IO without optimization\n");
fflush(stdout);
}
coll_chunk5();
if (MAINPROCESS) {
printf("multi-chunk collective IO with direct request\n");
fflush(stdout);
}
coll_chunk6();
if (MAINPROCESS) {
printf("linked chunk collective IO with optimization\n");
fflush(stdout);
}
coll_chunk7();
if (MAINPROCESS) {
printf("linked chunk collective IO transferring to multi-chunk\n");
fflush(stdout);
}
coll_chunk8();
if (MAINPROCESS) {
printf("multiple chunk collective IO with optimization\n");
fflush(stdout);
}
coll_chunk9();
if (MAINPROCESS) {
printf("multiple chunk collective IO transferring to independent IO\n");
fflush(stdout);
}
coll_chunk10();
}
#if 0
/* irregular collective IO tests*/
AddTest("ccontw",
coll_irregular_cont_write,NULL,
"collective irregular contiguous write",PARATESTFILE);
AddTest("ccontr",
coll_irregular_cont_read,NULL,
"collective irregular contiguous read",PARATESTFILE);
AddTest("cschunkw",
coll_irregular_simple_chunk_write,NULL,
"collective irregular simple chunk write",PARATESTFILE);
AddTest("cschunkr",
coll_irregular_simple_chunk_read,NULL,
"collective irregular simple chunk read",PARATESTFILE);
AddTest("ccchunkw",
coll_irregular_complex_chunk_write,NULL,
"collective irregular complex chunk write",PARATESTFILE);
AddTest("ccchunkr",
coll_irregular_complex_chunk_read,NULL,
"collective irregular complex chunk read",PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("collective irregular contiguous write\n");
fflush(stdout);
}
coll_irregular_cont_write();
if (MAINPROCESS) {
printf("collective irregular contiguous read\n");
fflush(stdout);
}
coll_irregular_cont_read();
if (MAINPROCESS) {
printf("collective irregular simple chunk write\n");
fflush(stdout);
}
coll_irregular_simple_chunk_write();
if (MAINPROCESS) {
printf("collective irregular simple chunk read\n");
fflush(stdout);
}
coll_irregular_simple_chunk_read();
if (MAINPROCESS) {
printf("collective irregular complex chunk write\n");
fflush(stdout);
}
coll_irregular_complex_chunk_write();
if (MAINPROCESS) {
printf("collective irregular complex chunk read\n");
fflush(stdout);
}
coll_irregular_complex_chunk_read();
#if 0
AddTest("null", null_dataset, NULL,
"null dataset test", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("null dataset test\n");
fflush(stdout);
}
null_dataset();
#if 0
io_mode_confusion_params.name = PARATESTFILE;
io_mode_confusion_params.count = 0; /* value not used */
AddTest("I/Omodeconf", io_mode_confusion, NULL,
"I/O mode confusion test",
&io_mode_confusion_params);
#endif
if (MAINPROCESS) {
printf("I/O mode confusion test\n");
fflush(stdout);
}
io_mode_confusion();
if ((mpi_size < 3) && MAINPROCESS) {
printf("rr_obj_hdr_flush_confusion test needs at least 3 processes.\n");
printf("rr_obj_hdr_flush_confusion test will be skipped \n");
}
if (mpi_size > 2) {
#if 0
rr_obj_flush_confusion_params.name = PARATESTFILE;
rr_obj_flush_confusion_params.count = 0; /* value not used */
AddTest("rrobjflushconf", rr_obj_hdr_flush_confusion, NULL,
"round robin object header flush confusion test",
&rr_obj_flush_confusion_params);
#endif
if (MAINPROCESS) {
printf("round robin object header flush confusion test\n");
fflush(stdout);
}
rr_obj_hdr_flush_confusion();
}
#if 0
AddTest("alnbg1",
chunk_align_bug_1, NULL,
"Chunk allocation with alignment bug.",
PARATESTFILE);
AddTest("tldsc",
lower_dim_size_comp_test, NULL,
"test lower dim size comp in span tree to mpi derived type",
PARATESTFILE);
AddTest("lccio",
link_chunk_collective_io_test, NULL,
"test mpi derived type management",
PARATESTFILE);
AddTest("actualio", actual_io_mode_tests, NULL,
"test actual io mode proprerty",
PARATESTFILE);
AddTest("nocolcause", no_collective_cause_tests, NULL,
"test cause for broken collective io",
PARATESTFILE);
AddTest("edpl", test_plist_ed, NULL,
"encode/decode Property Lists", NULL);
#endif
if (MAINPROCESS) {
printf("Chunk allocation with alignment bug\n");
fflush(stdout);
}
chunk_align_bug_1();
if (MAINPROCESS) {
printf("test lower dim size comp in span tree to mpi derived type\n");
fflush(stdout);
}
lower_dim_size_comp_test();
if (MAINPROCESS) {
printf("test mpi derived type management\n");
fflush(stdout);
}
link_chunk_collective_io_test();
if (MAINPROCESS) {
printf("test actual io mode property - SKIPPED currently due to native-specific testing\n");
fflush(stdout);
}
/* actual_io_mode_tests(); */
if (MAINPROCESS) {
printf("test cause for broken collective io - SKIPPED currently due to native-specific testing\n");
fflush(stdout);
}
/* no_collective_cause_tests(); */
if (MAINPROCESS) {
printf("encode/decode Property Lists\n");
fflush(stdout);
}
test_plist_ed();
if ((mpi_size < 2) && MAINPROCESS) {
printf("File Image Ops daisy chain test needs at least 2 processes.\n");
printf("File Image Ops daisy chain test will be skipped \n");
}
#if 0
AddTest((mpi_size < 2)? "-fiodc" : "fiodc", file_image_daisy_chain_test, NULL,
"file image ops daisy chain", NULL);
#endif
if (mpi_size >= 2) {
if (MAINPROCESS) {
printf("file image ops daisy chain - SKIPPED currently due to native-specific testing\n");
fflush(stdout);
}
/* file_image_daisy_chain_test(); */
}
if ((mpi_size < 2) && MAINPROCESS) {
printf("Atomicity tests need at least 2 processes to participate\n");
printf("8 is more recommended.. Atomicity tests will be skipped \n");
}
else if (facc_type != FACC_MPIO && MAINPROCESS) {
printf("Atomicity tests will not work with a non MPIO VFD\n");
}
else if (mpi_size >= 2 && facc_type == FACC_MPIO) {
#if 0
AddTest("atomicity", dataset_atomicity, NULL,
"dataset atomic updates", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("dataset atomic updates - SKIPPED currently due to native-specific testing\n");
fflush(stdout);
}
/* dataset_atomicity(); */
}
#if 0
AddTest("denseattr", test_dense_attr, NULL,
"Store Dense Attributes", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("Store Dense Attributes\n");
fflush(stdout);
}
test_dense_attr();
#if 0
AddTest("noselcollmdread", test_partial_no_selection_coll_md_read, NULL,
"Collective Metadata read with some ranks having no selection", PARATESTFILE);
AddTest("MC_coll_MD_read", test_multi_chunk_io_addrmap_issue, NULL,
"Collective MD read with multi chunk I/O (H5D__chunk_addrmap)", PARATESTFILE);
AddTest("LC_coll_MD_read", test_link_chunk_io_sort_chunk_issue, NULL,
"Collective MD read with link chunk I/O (H5D__sort_chunk)", PARATESTFILE);
#endif
if (MAINPROCESS) {
printf("Collective Metadata read with some ranks having no selection\n");
fflush(stdout);
}
test_partial_no_selection_coll_md_read();
if (MAINPROCESS) {
printf("Collective MD read with multi chunk I/O\n");
fflush(stdout);
}
test_multi_chunk_io_addrmap_issue();
if (MAINPROCESS) {
printf("Collective MD read with link chunk I/O\n");
fflush(stdout);
}
test_link_chunk_io_sort_chunk_issue();
/* Display testing information */
/* TestInfo(argv[0]); */
/* setup file access property list */
H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL);
/* Parse command line arguments */
/* TestParseCmdLine(argc, argv); */
if (dxfer_coll_type == DXFER_INDEPENDENT_IO && MAINPROCESS) {
printf("===================================\n"
" Using Independent I/O with file set view to replace collective I/O \n"
"===================================\n");
}
/* Perform requested testing */
/* PerformTests(); */
/* make sure all processes are finished before final report, cleanup
* and exit.
*/
MPI_Barrier(MPI_COMM_WORLD);
/* Display test summary, if requested */
/* if (MAINPROCESS && GetTestSummary())
TestSummary(); */
/* Clean up test files */
/* h5_clean_files(FILENAME, fapl); */
H5Fdelete(FILENAME[0], fapl);
H5Pclose(fapl);
/* nerrors += GetTestNumErrs(); */
/* Gather errors from all processes */
{
int temp;
MPI_Allreduce(&nerrors, &temp, 1, MPI_INT, MPI_MAX, MPI_COMM_WORLD);
nerrors = temp;
}
if (MAINPROCESS) { /* only process 0 reports */
printf("===================================\n");
if (nerrors)
printf("***PHDF5 tests detected %d errors***\n", nerrors);
else
printf("PHDF5 tests finished successfully\n");
printf("===================================\n");
}
#if 0
for (int i = 0; i < NFILENAME; i++) {
free(filenames[i]);
filenames[i] = NULL;
}
#endif
/* close HDF5 library */
H5close();
/* Release test infrastructure */
/* TestShutdown(); */
/* MPI_Finalize must be called AFTER H5close which may use MPI calls */
MPI_Finalize();
/* cannot just return (nerrors) because exit code is limited to 1byte */
return (nerrors != 0);
}
|